Citrus Sinensis ID: 003946
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 784 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SA60 | 793 | Pentatricopeptide repeat- | yes | no | 0.901 | 0.891 | 0.699 | 0.0 | |
| B3H672 | 674 | Pentatricopeptide repeat- | no | no | 0.783 | 0.910 | 0.259 | 6e-65 | |
| P0C7R4 | 658 | Pentatricopeptide repeat- | no | no | 0.413 | 0.492 | 0.360 | 3e-54 | |
| Q9CAA5 | 619 | Pentatricopeptide repeat- | no | no | 0.406 | 0.515 | 0.316 | 4e-47 | |
| Q9SF38 | 778 | Pentatricopeptide repeat- | no | no | 0.829 | 0.835 | 0.238 | 2e-44 | |
| Q9ASZ8 | 621 | Pentatricopeptide repeat- | no | no | 0.364 | 0.460 | 0.257 | 7e-14 | |
| Q0WMY5 | 952 | Pentatricopeptide repeat- | no | no | 0.216 | 0.178 | 0.287 | 3e-13 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.355 | 0.433 | 0.261 | 3e-13 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.375 | 0.461 | 0.240 | 2e-12 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.359 | 0.455 | 0.248 | 2e-12 |
| >sp|Q9SA60|PPR6_ARATH Pentatricopeptide repeat-containing protein At1g03100, mitochondrial OS=Arabidopsis thaliana GN=At1g03100 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1032 bits (2669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/713 (69%), Positives = 593/713 (83%), Gaps = 6/713 (0%)
Query: 76 FSSMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSF 135
SS+ G+IL+QARDPAKL+ EI+ A++EHR +AW+L+EQHMQM+GFPRK++VN ++ F
Sbjct: 81 ISSISGSILLQARDPAKLNEEIQIAVDEHRCDEAWRLFEQHMQMEGFPRKSVVNNVVVCF 140
Query: 136 VESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATE 195
ESLDS WL+K Y LVEQA+EEGKQ LLEKEPL+YLSL L+K G+ VPASTILRKLV TE
Sbjct: 141 AESLDSNWLQKGYSLVEQAYEEGKQNLLEKEPLLYLSLALAKSGMAVPASTILRKLVETE 200
Query: 196 QYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNT 255
+YP V+AWSA+LAHMSL G+YL+AEL+LEIGYLF + RVDPRKK NAPL+AMKPNT
Sbjct: 201 EYPHVSAWSAVLAHMSLAGSGSYLSAELVLEIGYLFHNNRVDPRKKSNAPLLAMKPNTQV 260
Query: 256 FNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHID 315
N+ALAGCLLF TTRKAEQLLD++P+IGVKAD+NLL+IMAHIYERNGRREELRKLQRHID
Sbjct: 261 LNVALAGCLLFGTTRKAEQLLDMIPKIGVKADANLLVIMAHIYERNGRREELRKLQRHID 320
Query: 316 EAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGV 375
EA NL++ QF QFYNCLL CHLKFGDL SASKMVLEML+R K ARNSL AA+L F+
Sbjct: 321 EACNLNESQFWQFYNCLLMCHLKFGDLESASKMVLEMLRRGKVARNSLGAAILEFDTAD- 379
Query: 376 NNRTPSEQNVNCTNSV---DLENSGIIENH-ILSYEDFTKDRKFVALEAEVKRVLQTLLG 431
+ R +++ + V D + ++ H ++ Y++F++DRKF+ LEAE K VL LL
Sbjct: 380 DGRLYTKRVSGKGSEVKEHDNPETRVVSIHSMIPYDEFSRDRKFLKLEAEAKDVLGALLA 439
Query: 432 MLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAAL 491
L QVELIT+E G+LQPTE+IY+KL KAFLE+GK KEL FL+KAE E+ VS D++ L
Sbjct: 440 KLHVQVELITSERGVLQPTEEIYVKLAKAFLESGKMKELAKFLLKAEHEDSPVSSDNSML 499
Query: 492 GHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARS 551
+VI CISLG LDQAHDLLDEM +AGVR SSVY+SLLKAY N+ REVT+LLRDA+
Sbjct: 500 INVINACISLGMLDQAHDLLDEMRMAGVRTGSSVYSSLLKAYCNTNQTREVTSLLRDAQK 559
Query: 552 AGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611
AGIQLD+SCYEAL+QS+++Q DT GAL++FKEMKE+KI R G+Q+FE L+KGC N EAG
Sbjct: 560 AGIQLDSSCYEALIQSQVIQNDTHGALNVFKEMKEAKILRGGNQKFEKLLKGCEGNAEAG 619
Query: 612 LMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSM 671
LM+KLL+E++E Q +D GVHDWNNVIHFF KK LMQDAEKALKRMRSLGH PNAQTFHSM
Sbjct: 620 LMSKLLREIREVQSLDAGVHDWNNVIHFFSKKGLMQDAEKALKRMRSLGHSPNAQTFHSM 679
Query: 672 VTGYAAIGGKYTEVTELWGEMKSFASST-SMNFDEELLDSVLYTFVRGGFFARANEVVAM 730
VTGYAAIG KYTEVTELWGEMKS A++T SM FD+ELLD+VLYTFVRGGFF+RANEVV M
Sbjct: 680 VTGYAAIGSKYTEVTELWGEMKSIAAATSSMKFDQELLDAVLYTFVRGGFFSRANEVVEM 739
Query: 731 MEEGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQTEAQLKKREAALGFKKWLGL 783
ME+ MF+DKYKYR LFLKYHKT YKGK PK Q+E+QLKKREA L FKKWLGL
Sbjct: 740 MEKKNMFVDKYKYRMLFLKYHKTAYKGKAPKVQSESQLKKREAGLVFKKWLGL 792
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Arabidopsis thaliana (taxid: 3702) |
| >sp|B3H672|PP317_ARATH Pentatricopeptide repeat-containing protein At4g17616 OS=Arabidopsis thaliana GN=At4g17616 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (636), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 180/694 (25%), Positives = 328/694 (47%), Gaps = 80/694 (11%)
Query: 93 LSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVE 152
L ++E A+ +HR DAW +++ ++ GFP ++N+ +T S D+ WL KA L
Sbjct: 57 LKKKLETALKDHRVDDAWDVFKDFKRLYGFPESVIMNRFVTVLSYSSDAGWLCKASDLTR 116
Query: 153 QAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSL 212
A ++ +L + L LSL L++ + A +ILR ++ ++ HM
Sbjct: 117 LALKQNPG-MLSGDVLTKLSLSLARAQMVESACSILRIMLEKGYVLTSDVLRLVVMHMVK 175
Query: 213 TAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKA 272
T G LA+ ++++ F + V R ++P +KP+T FN+ L C+ F + K
Sbjct: 176 TEIGTCLASNYLVQVCDRFVEFNVGKRN--SSPGNVVKPDTVLFNLVLGSCVRFGFSLKG 233
Query: 273 EQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCL 332
++L+++M ++ V AD+ ++IM+ IYE NG R+ELRK + HI + ++ F++ L
Sbjct: 234 QELIELMAKVDVVADAYSIVIMSCIYEMNGMRDELRKFKEHIGQVPPQLLGHYQHFFDNL 293
Query: 333 LSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVD 392
LS KF D+ SA ++ L+M + + ++ +G ++ P V
Sbjct: 294 LSLEFKFDDIGSAGRLALDMCK---------SKVLVSVENLGFDSEKPRVLPVG------ 338
Query: 393 LENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEK 452
+HI S K + ++ LG + + + + L T K
Sbjct: 339 -------SHHIRSGLKIHISPKLLQRDSS--------LG-VDTEATFVNYSNSKLGITNK 382
Query: 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLD 512
KLV + EL+ L L VI C+++GWL+ AHD+LD
Sbjct: 383 TLAKLVYGYKRHDNLPELSKLLFSLGGSRL--------CADVIDACVAIGWLEAAHDILD 434
Query: 513 EMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQK 572
+M+ AG + Y +L Y ++ R LL+ AG+ D S E ++ + +K
Sbjct: 435 DMNSAGYPMELATYRMVLSGYYKSKMLRNAEVLLKQMTKAGLITDPS-NEIVVSPETEEK 493
Query: 573 DTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG--V 630
D+ +N E L L+QE+ G+++ +
Sbjct: 494 DS-------------------------------ENTE--LRDLLVQEINAGKQMKAPSML 520
Query: 631 HDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWG 690
++ N+ +++FCK ++ DA +++ + P Q+F ++ Y+++ G Y E+T +WG
Sbjct: 521 YELNSSLYYFCKAKMQGDALITYRKIPKMKIPPTVQSFWILIDMYSSL-GMYREITIVWG 579
Query: 691 EMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKY 750
++K +S ++ ++LL+ ++ F+RGG+F R E+++ M+E M+ D Y+ +LK
Sbjct: 580 DIKRNIASKNLKTTQDLLEKLVVNFLRGGYFERVMELISYMKENDMYNDLTMYKNEYLKL 639
Query: 751 HKTLYKG-KTPKFQTEAQLKKREAALGFKKWLGL 783
HK LY+ K TEAQ ++ E F+K +G+
Sbjct: 640 HKNLYRTLKASDAVTEAQAQRLEHVKTFRKLVGI 673
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7R4|PP110_ARATH Pentatricopeptide repeat-containing protein At1g69290 OS=Arabidopsis thaliana GN=At1g69290 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (544), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 189/336 (56%), Gaps = 12/336 (3%)
Query: 454 YIKLVKAFLEAGKTKELTHFLIKAEK-ENLQVSHDDAALGHVITLCISLGWLDQAHDLLD 512
Y +LVK F+E+ K L +++A+K E+ V D + +I C++LG+ D+AH +L+
Sbjct: 327 YCELVKGFIESKSVKSLAKVILEAQKLESSYVGVDSSVGFGIINACVNLGFSDKAHSILE 386
Query: 513 EM-HLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQ 571
EM G VY +LKAY + R E T L+ + S+G+QLD AL+++ +
Sbjct: 387 EMIAQGGGSVGIGVYVPILKAYCKEYRTAEATQLVTEISSSGLQLDVEISNALIEASMTN 446
Query: 572 KDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVH 631
+D A LF++M+E+++ + ++ G +N LMA L EV E R++ H
Sbjct: 447 QDFISAFTLFRDMRENRVV-DLKGSYLTIMTGLLENQRPELMAAFLDEVVEDPRVEVNSH 505
Query: 632 DWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGE 691
DWN++IH FCK ++DA + +RM L + PN QT+ S++ GY + G KY V LW E
Sbjct: 506 DWNSIIHAFCKSGRLEDARRTFRRMVFLRYEPNNQTYLSLINGYVS-GEKYFNVLLLWNE 564
Query: 692 MKSFASSTSM----NFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747
+K SS D L+D+ LY V+GGFF A +VV +E K+F+DK++Y+ F
Sbjct: 565 IKGKISSVEAEKRSRLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKWRYKQAF 624
Query: 748 LKYHKTLYKGKTPKFQTEAQLKKREAALGFKKWLGL 783
++ HK L + PK + + KK E+ + FK W GL
Sbjct: 625 METHKKL---RLPKLR-KRNYKKMESLVAFKNWAGL 656
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA5|PP109_ARATH Pentatricopeptide repeat-containing protein At1g68980, mitochondrial OS=Arabidopsis thaliana GN=At1g68980 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 190 bits (483), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/332 (31%), Positives = 182/332 (54%), Gaps = 13/332 (3%)
Query: 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGH-VITLCISLGWLDQAH 508
+E+ Y +LV+ F+E+ + L +I+A+K + ++G ++ C+ LG+
Sbjct: 295 SEETYCELVRGFIESKSVESLAKLIIEAQKLESMSTDVGGSVGFGIVNACVKLGF--SGK 352
Query: 509 DLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSK 568
+LDE++ G VY +LKAY + R E T L+ + S+G+QLD Y ++++
Sbjct: 353 SILDELNAQGGSGGIGVYVPILKAYCKEGRTSEATQLVTEISSSGLQLDVETYNTMIEAS 412
Query: 569 IVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC 628
+ + D AL LF++M+E+++ + + ++ G +N LMA+ ++EV E R++
Sbjct: 413 MTKHDFLSALTLFRDMRETRVA-DLKRCYLTIMTGLLENQRPELMAEFVEEVMEDPRVEV 471
Query: 629 GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTEL 688
HDWN++IH FCK + DA+ +RM L + PN QT+ S++ GY + KY EV +
Sbjct: 472 KSHDWNSIIHAFCKSGRLGDAKSTFRRMTFLQYEPNNQTYLSLINGYVSC-EKYFEVVVI 530
Query: 689 WGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFL 748
W E K + L D+ L V+GGFF A +V+ +E K+F+DK++Y+ F+
Sbjct: 531 WKEFK----DKKAKLEHALADAFLNALVKGGFFGTALQVIEKCQEMKIFVDKWRYKATFM 586
Query: 749 KYHKTLYKGKTPKFQTEAQLKKREAALGFKKW 780
+ K L + PK + + ++KK E FK W
Sbjct: 587 ETQKNL---RLPKLR-KRKMKKIEFLDAFKNW 614
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SF38|PP222_ARATH Pentatricopeptide repeat-containing protein At3g09650, chloroplastic OS=Arabidopsis thaliana GN=HCF152 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 168/704 (23%), Positives = 315/704 (44%), Gaps = 54/704 (7%)
Query: 101 INEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQ 160
+ + +AW Y Q + G T ++++++ + L +A ++ + E +
Sbjct: 92 LRNRKTDEAWAKYVQSTHLPG---PTCLSRLVSQLSYQSKPESLTRAQSILTRLRNERQL 148
Query: 161 ILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAP-GAYL 219
L+ L L++ +K G + A ++++ ++ + P V AW+A +A +S + G
Sbjct: 149 HRLDANSLGLLAMAAAKSGQTLYAVSVIKSMIRSGYLPHVKAWTAAVASLSASGDDGPEE 208
Query: 220 AAELILEIGYLFQDGRVDPRKKCNAPLIAM-KPNTNTFNIALAGCLLFETTRKAEQLLDI 278
+ +L + I RV ++ + L+ +P+T FN L C T K +L +
Sbjct: 209 SIKLFIAITR-----RV--KRFGDQSLVGQSRPDTAAFNAVLNACANLGDTDKYWKLFEE 261
Query: 279 MPRIGVKADSNLLIIMAHIYERNGRREELR-KLQRHIDEAVNLSDIQFRQFYNCLLSCHL 337
M + D +M + R GR+E + L+R ID+ + + + L++ ++
Sbjct: 262 MSEWDCEPDVLTYNVMIKLCARVGRKELIVFVLERIIDKGIKVCMTTM----HSLVAAYV 317
Query: 338 KFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSG 397
FGDL +A ++V M +E R L + NA + + E + D E+SG
Sbjct: 318 GFGDLRTAERIVQAM----REKRRDLCKVLRECNAEDLKEKEEEEAEDDEDAFEDDEDSG 373
Query: 398 IIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKL 457
+S E V V + LL + P +IY L
Sbjct: 374 YSARDEVS-------------EEGVVDVFKKLLPNSVDPSGEPPLLPKVFAPDSRIYTTL 420
Query: 458 VKAFLEAGKTKELTHFLIKAEKENLQVSH-DDAALGHVITLCISLGWLDQAHDLLDEMHL 516
+K +++ G+ + L +++ + SH D+ V++ ++ G +D+A +L EM
Sbjct: 421 MKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEMAR 480
Query: 517 AGVRASSSVYASLLKAYIEANRPREVTALLRD-ARSAGIQLDASCYEALLQSKIVQKDTP 575
GV A+ Y LLK Y + + LLR+ AGI+ D Y ++ I+ D+
Sbjct: 481 MGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILIDDSA 540
Query: 576 GALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNN 635
GAL F EM+ I + + L+K A + + L ++ E+ R+ + WN
Sbjct: 541 GALAFFNEMRTRGIAPT-KISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNM 599
Query: 636 VIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMK-- 693
++ +C+ L++DA++ + RM+ G PN T+ S+ G + K + LW E+K
Sbjct: 600 LVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQ-ARKPGDALLLWKEIKER 658
Query: 694 -------------SFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDK 740
S + + DE LLD++ VR FF +A E++A MEE + +K
Sbjct: 659 CAVKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPNK 718
Query: 741 YKYRTLFLKYHKTLYKGK-TPKFQTEAQLKKREAALGFKKWLGL 783
KY+ ++++ H ++ K + + + +++++ AA FK WLGL
Sbjct: 719 TKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGL 762
|
Involved in the processing of polycistronic chloroplast psbB-psbT-psbH-petB-petD transcript. Could bind RNA. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 138/307 (44%), Gaps = 21/307 (6%)
Query: 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVIT--LCISLGWL 504
QP E Y ++K ++G+T L K E+ +++ DA +I LC G L
Sbjct: 208 FQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKL---DAVKYSIIIDGLCKD-GSL 263
Query: 505 DQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEAL 564
D A +L +EM + G +A +Y +L++ + A R + LLRD I D + AL
Sbjct: 264 DNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSAL 323
Query: 565 LQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH--EAGLMAKLLQEVKE 622
+ + + A L KEM + I ++ C +N +A M L+ V +
Sbjct: 324 IDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM--VSK 381
Query: 623 GQRIDCG--VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGG 680
G CG + +N +I+ +CK L+ D + ++M G + + T+++++ G+ + G
Sbjct: 382 G----CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL-G 436
Query: 681 KYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDK 740
K EL+ EM S + + LLD + G +A E+ +E+ KM +D
Sbjct: 437 KLEVAKELFQEMVSRRVRPDIVSYKILLDGL----CDNGEPEKALEIFEKIEKSKMELDI 492
Query: 741 YKYRTLF 747
Y +
Sbjct: 493 GIYNIII 499
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 4/174 (2%)
Query: 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563
+++A ++LDEM LAGV A+ Y +++ Y + ++ G+ +D YEA
Sbjct: 640 MEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEA 699
Query: 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEV-KE 622
LL++ AL + KEM IPR+ + +L+ G A+ + A L+Q++ KE
Sbjct: 700 LLKACCKSGRMQSALAVTKEMSARNIPRNSFV-YNILIDGWARRGDVWEAADLIQQMKKE 758
Query: 623 GQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYA 676
G + D +H + + I K M A + ++ M +LG PN +T+ +++ G+A
Sbjct: 759 GVKPD--IHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWA 810
|
May play a role in the plastid ribosome biogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 132/298 (44%), Gaps = 19/298 (6%)
Query: 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVIT--LCISLGWL 504
QP E Y ++ ++G+T L K E+ N+++ DA +I LC G L
Sbjct: 224 FQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL---DAVKYSIIIDGLCKD-GSL 279
Query: 505 DQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEAL 564
D A +L +EM + G +A Y +L+ + A R + LLRD I + + L
Sbjct: 280 DNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVL 339
Query: 565 LQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG-CAQNH--EAGLMAKLLQEVK 621
+ S + + A L KEM + I + L+ G C +N EA M L+ +
Sbjct: 340 IDSFVKEGKLREADQLLKEMMQRGIA-PNTITYNSLIDGFCKENRLEEAIQMVDLM--IS 396
Query: 622 EGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGK 681
+G D + +N +I+ +CK + D + + M G + N T++++V G+ GK
Sbjct: 397 KG--CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQ-SGK 453
Query: 682 YTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFID 739
+L+ EM S + + LLD + G +A E+ +E+ KM +D
Sbjct: 454 LEVAKKLFQEMVSRRVRPDIVSYKILLDGL----CDNGELEKALEIFGKIEKSKMELD 507
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 133/308 (43%), Gaps = 14/308 (4%)
Query: 442 TEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISL 501
E+G QP Y ++ ++G+T L K E+ N+++ D +I
Sbjct: 220 VEYGC-QPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL--DAVKYSIIIDGLCKH 276
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G LD A +L +EM + G+ + Y L+ + A R + LLRD I + +
Sbjct: 277 GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTF 336
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH--EAGLMAKLLQE 619
L+ S + + A L KEM I ++ C +NH +A M L+
Sbjct: 337 SVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM-- 394
Query: 620 VKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679
V +G D + +N +I+ +CK + D + ++M G + + T+++++ G+ +
Sbjct: 395 VSKG--CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL- 451
Query: 680 GKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFID 739
GK EL+ EM S ++ + LLD + G +A E+ +E+ KM +D
Sbjct: 452 GKLNVAKELFQEMVSRKVPPNIVTYKILLDGL----CDNGESEKALEIFEKIEKSKMELD 507
Query: 740 KYKYRTLF 747
Y +
Sbjct: 508 IGIYNIII 515
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 16/298 (5%)
Query: 442 TEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISL 501
E+G QP E Y ++ ++G + K E+ N++ S ++ + +LC
Sbjct: 202 VEYG-FQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSI-VIDSLCKD- 258
Query: 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561
G D A L +EM + G++A Y+SL+ + + +LR+ I D +
Sbjct: 259 GSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTF 318
Query: 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG-CAQN--HEAGLMAKLLQ 618
AL+ + + A L+ EM I + L+ G C +N HEA M L+
Sbjct: 319 SALIDVFVKEGKLLEAKELYNEMITRGIAPD-TITYNSLIDGFCKENCLHEANQMFDLM- 376
Query: 619 EVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAI 678
V +G D + ++ +I+ +CK + + D + + + S G +PN T++++V G+
Sbjct: 377 -VSKGCEPD--IVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ- 432
Query: 679 GGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKM 736
GK EL+ EM S S+ LLD + G +A E+ M++ +M
Sbjct: 433 SGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL----CDNGELNKALEIFEKMQKSRM 486
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 784 | ||||||
| 359479705 | 784 | PREDICTED: pentatricopeptide repeat-cont | 0.934 | 0.934 | 0.752 | 0.0 | |
| 296085227 | 1361 | unnamed protein product [Vitis vinifera] | 0.934 | 0.538 | 0.752 | 0.0 | |
| 224082666 | 750 | predicted protein [Populus trichocarpa] | 0.932 | 0.974 | 0.758 | 0.0 | |
| 255567544 | 787 | pentatricopeptide repeat-containing prot | 0.983 | 0.979 | 0.687 | 0.0 | |
| 449458514 | 796 | PREDICTED: pentatricopeptide repeat-cont | 0.924 | 0.910 | 0.707 | 0.0 | |
| 15218705 | 793 | pentatricopeptide repeat-containing prot | 0.901 | 0.891 | 0.699 | 0.0 | |
| 242039671 | 768 | hypothetical protein SORBIDRAFT_01g02171 | 0.889 | 0.907 | 0.598 | 0.0 | |
| 413934189 | 768 | hypothetical protein ZEAMMB73_971808 [Ze | 0.889 | 0.907 | 0.591 | 0.0 | |
| 297727589 | 788 | Os10g0422566 [Oryza sativa Japonica Grou | 0.950 | 0.945 | 0.561 | 0.0 | |
| 326516602 | 775 | predicted protein [Hordeum vulgare subsp | 0.900 | 0.910 | 0.582 | 0.0 |
| >gi|359479705|ref|XP_003632339.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1156 bits (2991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/740 (75%), Positives = 632/740 (85%), Gaps = 7/740 (0%)
Query: 48 LVRCYLTYLNMQTGVLPNLNEFTYPTHPFSSMGGTILVQARDPAKLSAEIENAINEHRYG 107
+ YLT LNM VL + + FSSMGGTILVQARDPAKL E+ENAI+ HRY
Sbjct: 47 FISPYLTNLNMGNAVL---DSRSGSIQSFSSMGGTILVQARDPAKLCEELENAIDGHRYS 103
Query: 108 DAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEP 167
DAWKL+EQHM M+GFPRK++VN +LTSF ESLD +WLEKAYGLVE+AF E KQ LLEKE
Sbjct: 104 DAWKLFEQHMGMEGFPRKSIVNTVLTSFSESLDVQWLEKAYGLVERAFAESKQNLLEKET 163
Query: 168 LIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEI 227
LIY+S GL+ CGLPVPAST+LRKLV E++PPV+AWSAILAHMS TA GAYLAAELILEI
Sbjct: 164 LIYISFGLASCGLPVPASTVLRKLVEMEEFPPVSAWSAILAHMSQTASGAYLAAELILEI 223
Query: 228 GYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKAD 287
GYLFQDGRVDPRKK N PL+AMKPNT FNIALAGCLLF TTRKAE+LLD+MPR+GVK D
Sbjct: 224 GYLFQDGRVDPRKKSNRPLLAMKPNTTAFNIALAGCLLFGTTRKAEKLLDMMPRVGVKPD 283
Query: 288 SNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASK 347
NLLIIMAHIYERNGRRE+LRKL+RHIDEA NLSDIQFRQFYNCLL+CHLKFGDL+SAS
Sbjct: 284 VNLLIIMAHIYERNGRREDLRKLKRHIDEAHNLSDIQFRQFYNCLLTCHLKFGDLDSASH 343
Query: 348 MVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTP----SEQNVNCTNSVDLENSGIIENHI 403
MVLEML++A+EARNSL+AA L F AVG N + SE++++ S LEN+ +
Sbjct: 344 MVLEMLRKAREARNSLSAATLMFEAVGSGNTSTQEQVSEKSLSHRKSDGLENARPNTSLS 403
Query: 404 LSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLE 463
+SYE+F++DR F+ LEAE K +L LL LQ QVE ITTE GILQPTE+IY+KLVKAFLE
Sbjct: 404 ISYEEFSRDRNFLKLEAEAKEILDRLLAKLQMQVEFITTERGILQPTERIYVKLVKAFLE 463
Query: 464 AGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASS 523
AGKTK+L FLIKAEKE+ VS D++AL HVI CI LGWLDQAHDLLDEM LAGVR S
Sbjct: 464 AGKTKQLAEFLIKAEKEDSPVSTDNSALVHVINSCILLGWLDQAHDLLDEMRLAGVRTGS 523
Query: 524 SVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKE 583
SVY+SLLKAY +ANR E+T+LLRDAR AG+QLD+SCYEAL+QS+++QKDT GALH+FKE
Sbjct: 524 SVYSSLLKAYCKANRAGEITSLLRDARKAGVQLDSSCYEALIQSRVLQKDTEGALHVFKE 583
Query: 584 MKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK 643
MKE+KIPRSGH+EFEMLVKGCA++ EAGLMAKLL E+KE QR+DCGVHDWNNVIHFFC+K
Sbjct: 584 MKEAKIPRSGHREFEMLVKGCAESGEAGLMAKLLHEIKEEQRVDCGVHDWNNVIHFFCRK 643
Query: 644 RLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF 703
RLMQDAEKALK+MRSLGH PNAQTFHSMVTGYAAIGGKY EVTELWGEMKSFASS+SM F
Sbjct: 644 RLMQDAEKALKKMRSLGHAPNAQTFHSMVTGYAAIGGKYVEVTELWGEMKSFASSSSMKF 703
Query: 704 DEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQ 763
D+ELLD+VLYTFVRGGFF RANEVV MME GKMFIDKYKYRTLFLKYHKTLYK K PK Q
Sbjct: 704 DQELLDAVLYTFVRGGFFVRANEVVEMMERGKMFIDKYKYRTLFLKYHKTLYKSKPPKVQ 763
Query: 764 TEAQLKKREAALGFKKWLGL 783
TEAQ ++R+AAL FKKW+GL
Sbjct: 764 TEAQFRRRDAALTFKKWVGL 783
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085227|emb|CBI28722.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1147 bits (2968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/740 (75%), Positives = 632/740 (85%), Gaps = 7/740 (0%)
Query: 48 LVRCYLTYLNMQTGVLPNLNEFTYPTHPFSSMGGTILVQARDPAKLSAEIENAINEHRYG 107
+ YLT LNM VL + + FSSMGGTILVQARDPAKL E+ENAI+ HRY
Sbjct: 624 FISPYLTNLNMGNAVL---DSRSGSIQSFSSMGGTILVQARDPAKLCEELENAIDGHRYS 680
Query: 108 DAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEP 167
DAWKL+EQHM M+GFPRK++VN +LTSF ESLD +WLEKAYGLVE+AF E KQ LLEKE
Sbjct: 681 DAWKLFEQHMGMEGFPRKSIVNTVLTSFSESLDVQWLEKAYGLVERAFAESKQNLLEKET 740
Query: 168 LIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEI 227
LIY+S GL+ CGLPVPAST+LRKLV E++PPV+AWSAILAHMS TA GAYLAAELILEI
Sbjct: 741 LIYISFGLASCGLPVPASTVLRKLVEMEEFPPVSAWSAILAHMSQTASGAYLAAELILEI 800
Query: 228 GYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKAD 287
GYLFQDGRVDPRKK N PL+AMKPNT FNIALAGCLLF TTRKAE+LLD+MPR+GVK D
Sbjct: 801 GYLFQDGRVDPRKKSNRPLLAMKPNTTAFNIALAGCLLFGTTRKAEKLLDMMPRVGVKPD 860
Query: 288 SNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASK 347
NLLIIMAHIYERNGRRE+LRKL+RHIDEA NLSDIQFRQFYNCLL+CHLKFGDL+SAS
Sbjct: 861 VNLLIIMAHIYERNGRREDLRKLKRHIDEAHNLSDIQFRQFYNCLLTCHLKFGDLDSASH 920
Query: 348 MVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTP----SEQNVNCTNSVDLENSGIIENHI 403
MVLEML++A+EARNSL+AA L F AVG N + SE++++ S LEN+ +
Sbjct: 921 MVLEMLRKAREARNSLSAATLMFEAVGSGNTSTQEQVSEKSLSHRKSDGLENARPNTSLS 980
Query: 404 LSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLE 463
+SYE+F++DR F+ LEAE K +L LL LQ QVE ITTE GILQPTE+IY+KLVKAFLE
Sbjct: 981 ISYEEFSRDRNFLKLEAEAKEILDRLLAKLQMQVEFITTERGILQPTERIYVKLVKAFLE 1040
Query: 464 AGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASS 523
AGKTK+L FLIKAEKE+ VS D++AL HVI CI LGWLDQAHDLLDEM LAGVR S
Sbjct: 1041 AGKTKQLAEFLIKAEKEDSPVSTDNSALVHVINSCILLGWLDQAHDLLDEMRLAGVRTGS 1100
Query: 524 SVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKE 583
SVY+SLLKAY +ANR E+T+LLRDAR AG+QLD+SCYEAL+QS+++QKDT GALH+FKE
Sbjct: 1101 SVYSSLLKAYCKANRAGEITSLLRDARKAGVQLDSSCYEALIQSRVLQKDTEGALHVFKE 1160
Query: 584 MKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK 643
MKE+KIPRSGH+EFEMLVKGCA++ EAGLMAKLL E+KE QR+DCGVHDWNNVIHFFC+K
Sbjct: 1161 MKEAKIPRSGHREFEMLVKGCAESGEAGLMAKLLHEIKEEQRVDCGVHDWNNVIHFFCRK 1220
Query: 644 RLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF 703
RLMQDAEKALK+MRSLGH PNAQTFHSMVTGYAAIGGKY EVTELWGEMKSFASS+SM F
Sbjct: 1221 RLMQDAEKALKKMRSLGHAPNAQTFHSMVTGYAAIGGKYVEVTELWGEMKSFASSSSMKF 1280
Query: 704 DEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQ 763
D+ELLD+VLYTFVRGGFF RANEVV MME GKMFIDKYKYRTLFLKYHKTLYK K PK Q
Sbjct: 1281 DQELLDAVLYTFVRGGFFVRANEVVEMMERGKMFIDKYKYRTLFLKYHKTLYKSKPPKVQ 1340
Query: 764 TEAQLKKREAALGFKKWLGL 783
TEAQ ++R+AAL FKKW+GL
Sbjct: 1341 TEAQFRRRDAALTFKKWVGL 1360
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082666|ref|XP_002306785.1| predicted protein [Populus trichocarpa] gi|222856234|gb|EEE93781.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1140 bits (2948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/732 (75%), Positives = 626/732 (85%), Gaps = 1/732 (0%)
Query: 53 LTYLNMQTGVLPNLNEFTYPTHPFSSMGGTILVQARDPAKLSAEIENAINEHRYGDAWKL 112
LT LN T V+ F + +H FS++ GTILVQARDPAKL EIENAI+EHR+ DAWKL
Sbjct: 18 LTNLNGPTVVVGIQGGFNHQSHSFSTLAGTILVQARDPAKLCMEIENAIDEHRFNDAWKL 77
Query: 113 YEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLS 172
+EQH+ MDGFPRK++VNK+LTS+ SLD WLEKAYGLVEQ EE KQ LLEKEPLIYLS
Sbjct: 78 FEQHLHMDGFPRKSIVNKLLTSYSASLDVPWLEKAYGLVEQTIEESKQNLLEKEPLIYLS 137
Query: 173 LGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQ 232
L+KCGLPVPAST+LRKL+ EQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQ
Sbjct: 138 FVLAKCGLPVPASTVLRKLIQMEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQ 197
Query: 233 DGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLI 292
DGRVDPRKK NAPLIAMKPNT NIAL GCLLF TTRKAEQLLD+MPRIG++AD+NLLI
Sbjct: 198 DGRVDPRKKINAPLIAMKPNTIAMNIALTGCLLFGTTRKAEQLLDMMPRIGIRADTNLLI 257
Query: 293 IMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEM 352
IMAHIYERNGRREELRKLQRHID++ +L+D QFRQFYNCLL+CHLKFGDL++AS MVL M
Sbjct: 258 IMAHIYERNGRREELRKLQRHIDDSQSLTDTQFRQFYNCLLTCHLKFGDLDAASNMVLIM 317
Query: 353 LQRAKEARNSLAAAMLPFNAVGVNNRTP-SEQNVNCTNSVDLENSGIIENHILSYEDFTK 411
L++A+EARNS A A L F ++ P SE++++ S L N+ ++ +SYE+F +
Sbjct: 318 LRKAREARNSFATAALLFPIDKKSSPGPVSEESLSHKESGGLGNNRSNKDLTISYEEFYR 377
Query: 412 DRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELT 471
DR F+ L+ E K VL TLL LQ QVELITTE GILQPTEKIY+KLVKAFLE+GKTKEL
Sbjct: 378 DRNFLKLDTEAKEVLSTLLVELQMQVELITTERGILQPTEKIYVKLVKAFLESGKTKELA 437
Query: 472 HFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLK 531
FLIKAEKE+ S+DD+AL HVI CISLGWLDQAHDLLDEM LAG+R SSSVYASLLK
Sbjct: 438 AFLIKAEKEDSPASNDDSALVHVINSCISLGWLDQAHDLLDEMCLAGIRTSSSVYASLLK 497
Query: 532 AYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPR 591
AY +AN+ EVTALLRDAR AGIQLD+S Y AL++ +++QKDT ALH+FKEMKE+KIPR
Sbjct: 498 AYCKANQTGEVTALLRDARRAGIQLDSSSYNALIEFRVIQKDTKEALHIFKEMKEAKIPR 557
Query: 592 SGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEK 651
+GHQEFEMLVKGCA+ EAGLMAKLLQE+KE Q D GVHDWNNVIHFFCKKRLMQDAEK
Sbjct: 558 TGHQEFEMLVKGCAEGGEAGLMAKLLQEIKEEQAADSGVHDWNNVIHFFCKKRLMQDAEK 617
Query: 652 ALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSV 711
ALK+MRSLGH PNAQTFHSMVTGYAAIGGKY EVTELWGEMKS AS+TSM FD+ELLDSV
Sbjct: 618 ALKKMRSLGHAPNAQTFHSMVTGYAAIGGKYIEVTELWGEMKSIASATSMKFDQELLDSV 677
Query: 712 LYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQTEAQLKKR 771
LYTFVRGGFF+RANEVV MME+GKMFIDKYKYRTL+LKYHKTLYKGKTPK QTE+ +KKR
Sbjct: 678 LYTFVRGGFFSRANEVVDMMEKGKMFIDKYKYRTLYLKYHKTLYKGKTPKIQTESLVKKR 737
Query: 772 EAALGFKKWLGL 783
EAAL FKKWLGL
Sbjct: 738 EAALTFKKWLGL 749
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567544|ref|XP_002524751.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535935|gb|EEF37594.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1091 bits (2822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/786 (68%), Positives = 636/786 (80%), Gaps = 15/786 (1%)
Query: 6 RHFSA--SSSAILGLFNDSCQNAAWVSRHQIQSARSQWLGFEPILVRCYLTYLN--MQTG 61
RH S S + +L L +S + +S H +Q + S P+ ++ N +
Sbjct: 8 RHESTLISPAVLLSLLVNSGYDVTRISGHHVQVSSSH----RPVYAFATSSFTNSLLPLD 63
Query: 62 VLPNLNEFTYPTHPFSSMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDG 121
L N Y + S++ GTILVQARDPA+LSA +E+AINE R DAWKL+E+HMQM+G
Sbjct: 64 GLGMWNGLNYQVNSLSTLAGTILVQARDPARLSAGVEHAINELRLSDAWKLFEKHMQMEG 123
Query: 122 FPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLP 181
FP+K++VNK+L S ES D WLEKAYGLVEQA +E KQ LLEK+ LI+LS L+KCGL
Sbjct: 124 FPQKSVVNKLLASIAESNDVPWLEKAYGLVEQAIKESKQNLLEKDTLIFLSFNLAKCGLA 183
Query: 182 VPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKK 241
V AST+LRKL+ EQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDG+VDPRKK
Sbjct: 184 VLASTVLRKLIEMEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGKVDPRKK 243
Query: 242 CNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERN 301
CNA LIAMKPNT + NIALAGCL+F TTRKAEQLLD++PR+G+K ++ LLI MAHIYERN
Sbjct: 244 CNATLIAMKPNTTSVNIALAGCLVFGTTRKAEQLLDLIPRVGIKVNATLLITMAHIYERN 303
Query: 302 GRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARN 361
GRR+EL KLQRHIDEA ++SDIQ+RQFYNCLLSCHLKFGDL+SAS MVL+ML +AKEARN
Sbjct: 304 GRRQELMKLQRHIDEAHSISDIQYRQFYNCLLSCHLKFGDLDSASDMVLKMLWKAKEARN 363
Query: 362 SLAAAMLPFNAVGVNNRTPSEQ----NVNCTNSVDLENSGIIENHILSYEDFTKDRKFVA 417
SLAAA + A ++++ EQ +VN L S ++S+ +F KDR F+
Sbjct: 364 SLAAAKFVYQA---DSKSSHEQISPDSVNHREPDGLNKSRPNRTPMISHGEFLKDRDFLK 420
Query: 418 LEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKA 477
L+AE K +L +LL LQ QVELITT+ GILQPTEK+Y+KLVKAFLE+GKTKEL FL KA
Sbjct: 421 LDAEAKGLLDSLLAKLQTQVELITTDRGILQPTEKVYVKLVKAFLESGKTKELAAFLYKA 480
Query: 478 EKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN 537
EKE+ S+DD+ L HVI CISL WLDQAHDLLDEM +AGVR SSSVYASLLKAY +AN
Sbjct: 481 EKEDSPSSNDDSPLVHVINSCISLDWLDQAHDLLDEMRVAGVRMSSSVYASLLKAYCKAN 540
Query: 538 RPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEF 597
R EV ALLRDAR AGIQLD+SCY AL++S+++++DT GALHLFKEMK++KIPR+G+QEF
Sbjct: 541 RAGEVKALLRDARKAGIQLDSSCYGALIKSRVLEEDTQGALHLFKEMKDAKIPRAGNQEF 600
Query: 598 EMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMR 657
EMLVKGCA + EAGL+AKLL+E++EGQ +D GVHDWN VIHFFCKKRLMQDAEKALK+MR
Sbjct: 601 EMLVKGCADDGEAGLLAKLLREIREGQTVDSGVHDWNYVIHFFCKKRLMQDAEKALKKMR 660
Query: 658 SLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVR 717
SLGH PNAQTFHSMVTGYAAIGGKY EVTELWGEMKS AS+TSM FD+ELLDSVLYTFVR
Sbjct: 661 SLGHAPNAQTFHSMVTGYAAIGGKYVEVTELWGEMKSIASATSMKFDQELLDSVLYTFVR 720
Query: 718 GGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQTEAQLKKREAALGF 777
GGFF+RANEVVAMME+ +MFIDKYKYRTLFLKYHKTLYKGK+PK QTEAQ +KREAAL F
Sbjct: 721 GGFFSRANEVVAMMEKVEMFIDKYKYRTLFLKYHKTLYKGKSPKIQTEAQARKREAALSF 780
Query: 778 KKWLGL 783
KKW+GL
Sbjct: 781 KKWVGL 786
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458514|ref|XP_004146992.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like [Cucumis sativus] gi|449503826|ref|XP_004162196.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1070 bits (2767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/731 (70%), Positives = 598/731 (81%), Gaps = 6/731 (0%)
Query: 57 NMQTGVLPNLNEFTYPTHPFSSMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQH 116
N++ VL N+ S++ ILVQARDPAKLS +I+ AI E R D WKLY+QH
Sbjct: 67 NVEPIVLGLKNKCIIDIKLLSTLSERILVQARDPAKLSMDIQTAIEEQRLNDTWKLYQQH 126
Query: 117 MQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLS 176
MQM+GFPRK++VNK+LT F E+L+ +WLEKAY LVEQAF EGKQ LLEK+PLIYLS L+
Sbjct: 127 MQMEGFPRKSVVNKLLTCFAETLEIQWLEKAYDLVEQAFAEGKQNLLEKDPLIYLSYSLA 186
Query: 177 KCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRV 236
K GLP+PASTILR L+ E PV AWSAILAHMS T PGA+LAAELILEIGYLFQDGRV
Sbjct: 187 KLGLPIPASTILRNLIKMEHLLPVAAWSAILAHMSQTGPGAFLAAELILEIGYLFQDGRV 246
Query: 237 DPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAH 296
DPRKKCNAPLIAMKPN+ FNIAL+GC+LF TTRKAE+LLD+MPRIGVK D+NLL++M H
Sbjct: 247 DPRKKCNAPLIAMKPNSTAFNIALSGCVLFGTTRKAEELLDMMPRIGVKVDTNLLMVMVH 306
Query: 297 IYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRA 356
IYERNGRREEL+KLQRHIDEA NLSD+QFRQFY+CLL+CHLKFGDL SAS MVL ML++A
Sbjct: 307 IYERNGRREELKKLQRHIDEAHNLSDVQFRQFYSCLLTCHLKFGDLESASNMVLGMLRKA 366
Query: 357 KEARNSLAAAMLPFNA----VGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKD 412
K A+NS+A A L N + ++ SE+N C N D I + ++DF D
Sbjct: 367 KIAKNSVATATLACNTAENHIKPSSGKDSEKNFICQN--DGLKDKISNGKSIFFDDFVLD 424
Query: 413 RKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTH 472
+ F+ L+ E K +L+TLL LQ QVEL+TTE GILQPTE I +KLV+AFLEAGKTK+L
Sbjct: 425 KNFLKLDIEAKEILRTLLTKLQLQVELVTTERGILQPTEAILVKLVRAFLEAGKTKDLAQ 484
Query: 473 FLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKA 532
FLIKAE+E VS+DD+ L HVI CISLGWLDQAHDLLDEMHLAGVR SSVY SLLKA
Sbjct: 485 FLIKAEREESPVSNDDSVLVHVINACISLGWLDQAHDLLDEMHLAGVRTGSSVYGSLLKA 544
Query: 533 YIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRS 592
Y +ANR REV +LLRDAR AGIQLD+SCY+AL+ S+++Q D GAL F+EMKE+KIPRS
Sbjct: 545 YCKANRTREVASLLRDARKAGIQLDSSCYDALINSRVLQNDNKGALKFFQEMKEAKIPRS 604
Query: 593 GHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKA 652
GHQEF LV+ A+N EAGLMAKLLQE+K+GQR+D G+HDWNNVIHFFCKKRLMQDAEKA
Sbjct: 605 GHQEFRRLVEKSAENDEAGLMAKLLQEIKDGQRVDYGLHDWNNVIHFFCKKRLMQDAEKA 664
Query: 653 LKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVL 712
LK+MRSLGH PNAQTFHSMVTGYAAIGGKY EVTELWGEMKS AS++ + FD+ELLDSVL
Sbjct: 665 LKKMRSLGHCPNAQTFHSMVTGYAAIGGKYVEVTELWGEMKSIASASFLKFDQELLDSVL 724
Query: 713 YTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQTEAQLKKRE 772
YTFVRGGFFARANEVV +ME+ KMFIDKYKYRTLFLKYH+TLYKGK PKFQTEAQL+KRE
Sbjct: 725 YTFVRGGFFARANEVVEVMEKDKMFIDKYKYRTLFLKYHRTLYKGKAPKFQTEAQLRKRE 784
Query: 773 AALGFKKWLGL 783
L FKKW+GL
Sbjct: 785 TTLAFKKWVGL 795
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15218705|ref|NP_171809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75200246|sp|Q9SA60.1|PPR6_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03100, mitochondrial; Flags: Precursor gi|4587568|gb|AAD25799.1|AC006550_7 Contains PF|00637 Clathrin 7-fold repeat. EST gb|AA721862 comes from this gene [Arabidopsis thaliana] gi|44917465|gb|AAS49057.1| At1g03100 [Arabidopsis thaliana] gi|332189408|gb|AEE27529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1032 bits (2669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/713 (69%), Positives = 593/713 (83%), Gaps = 6/713 (0%)
Query: 76 FSSMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSF 135
SS+ G+IL+QARDPAKL+ EI+ A++EHR +AW+L+EQHMQM+GFPRK++VN ++ F
Sbjct: 81 ISSISGSILLQARDPAKLNEEIQIAVDEHRCDEAWRLFEQHMQMEGFPRKSVVNNVVVCF 140
Query: 136 VESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATE 195
ESLDS WL+K Y LVEQA+EEGKQ LLEKEPL+YLSL L+K G+ VPASTILRKLV TE
Sbjct: 141 AESLDSNWLQKGYSLVEQAYEEGKQNLLEKEPLLYLSLALAKSGMAVPASTILRKLVETE 200
Query: 196 QYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNT 255
+YP V+AWSA+LAHMSL G+YL+AEL+LEIGYLF + RVDPRKK NAPL+AMKPNT
Sbjct: 201 EYPHVSAWSAVLAHMSLAGSGSYLSAELVLEIGYLFHNNRVDPRKKSNAPLLAMKPNTQV 260
Query: 256 FNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHID 315
N+ALAGCLLF TTRKAEQLLD++P+IGVKAD+NLL+IMAHIYERNGRREELRKLQRHID
Sbjct: 261 LNVALAGCLLFGTTRKAEQLLDMIPKIGVKADANLLVIMAHIYERNGRREELRKLQRHID 320
Query: 316 EAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGV 375
EA NL++ QF QFYNCLL CHLKFGDL SASKMVLEML+R K ARNSL AA+L F+
Sbjct: 321 EACNLNESQFWQFYNCLLMCHLKFGDLESASKMVLEMLRRGKVARNSLGAAILEFDTAD- 379
Query: 376 NNRTPSEQNVNCTNSV---DLENSGIIENH-ILSYEDFTKDRKFVALEAEVKRVLQTLLG 431
+ R +++ + V D + ++ H ++ Y++F++DRKF+ LEAE K VL LL
Sbjct: 380 DGRLYTKRVSGKGSEVKEHDNPETRVVSIHSMIPYDEFSRDRKFLKLEAEAKDVLGALLA 439
Query: 432 MLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAAL 491
L QVELIT+E G+LQPTE+IY+KL KAFLE+GK KEL FL+KAE E+ VS D++ L
Sbjct: 440 KLHVQVELITSERGVLQPTEEIYVKLAKAFLESGKMKELAKFLLKAEHEDSPVSSDNSML 499
Query: 492 GHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARS 551
+VI CISLG LDQAHDLLDEM +AGVR SSVY+SLLKAY N+ REVT+LLRDA+
Sbjct: 500 INVINACISLGMLDQAHDLLDEMRMAGVRTGSSVYSSLLKAYCNTNQTREVTSLLRDAQK 559
Query: 552 AGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611
AGIQLD+SCYEAL+QS+++Q DT GAL++FKEMKE+KI R G+Q+FE L+KGC N EAG
Sbjct: 560 AGIQLDSSCYEALIQSQVIQNDTHGALNVFKEMKEAKILRGGNQKFEKLLKGCEGNAEAG 619
Query: 612 LMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSM 671
LM+KLL+E++E Q +D GVHDWNNVIHFF KK LMQDAEKALKRMRSLGH PNAQTFHSM
Sbjct: 620 LMSKLLREIREVQSLDAGVHDWNNVIHFFSKKGLMQDAEKALKRMRSLGHSPNAQTFHSM 679
Query: 672 VTGYAAIGGKYTEVTELWGEMKSFASST-SMNFDEELLDSVLYTFVRGGFFARANEVVAM 730
VTGYAAIG KYTEVTELWGEMKS A++T SM FD+ELLD+VLYTFVRGGFF+RANEVV M
Sbjct: 680 VTGYAAIGSKYTEVTELWGEMKSIAAATSSMKFDQELLDAVLYTFVRGGFFSRANEVVEM 739
Query: 731 MEEGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQTEAQLKKREAALGFKKWLGL 783
ME+ MF+DKYKYR LFLKYHKT YKGK PK Q+E+QLKKREA L FKKWLGL
Sbjct: 740 MEKKNMFVDKYKYRMLFLKYHKTAYKGKAPKVQSESQLKKREAGLVFKKWLGL 792
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242039671|ref|XP_002467230.1| hypothetical protein SORBIDRAFT_01g021710 [Sorghum bicolor] gi|241921084|gb|EER94228.1| hypothetical protein SORBIDRAFT_01g021710 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/712 (59%), Positives = 539/712 (75%), Gaps = 15/712 (2%)
Query: 76 FSSMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSF 135
FS++ GTILVQA DP++L+ EIENAI+E R+ DAW+ Y++H+ MDG PRK++++K++T
Sbjct: 67 FSTVAGTILVQAHDPSQLALEIENAIDEQRFDDAWRAYDKHVHMDGLPRKSVLSKLITGL 126
Query: 136 VESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATE 195
ES D L+++Y +V AFEE KQ LL+KEPLIYLSL L++C LP A ++RKLV E
Sbjct: 127 AESCDPHRLKQSYNVVSHAFEE-KQELLDKEPLIYLSLVLARCDLPNLAINVVRKLVKME 185
Query: 196 QYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNT 255
YPPV AWSAILAHM T GA+L A+L++E+GYLFQ+ RVDPRKK N PL++MKPN+ T
Sbjct: 186 AYPPVAAWSAILAHMCQTNTGAFLGADLVMELGYLFQNNRVDPRKKSNRPLLSMKPNSFT 245
Query: 256 FNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHID 315
FNI L L+F TTRKAEQLL++MPRIGVK + NLLI+MAHIYERNGRR+E++KL+RH+D
Sbjct: 246 FNIVLTASLVFGTTRKAEQLLELMPRIGVKPEVNLLIVMAHIYERNGRRDEIQKLKRHVD 305
Query: 316 EAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGV 375
EA LS+ +FRQFY+CLLSCHLKFGDL+ A MVL+ML++ K A+ SL AA A V
Sbjct: 306 EACGLSESEFRQFYDCLLSCHLKFGDLDHAVDMVLDMLRKGKNAKRSLEAAKAVLEA--V 363
Query: 376 NNRT---PSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGM 432
NR P E+ D EN + +LSY F KD F E + +++ L
Sbjct: 364 ENRKVYFPYEK-------TDAENPCSSNSQMLSYASFLKDNSFARFELHARELVRLLTDK 416
Query: 433 LQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALG 492
LQ+QV L+ +EHGIL PTE +Y KLVKAFLEA K L FL+KA KE+ VS + + +
Sbjct: 417 LQEQVGLVKSEHGILHPTETMYAKLVKAFLEADKISALVSFLVKASKEDSPVSVESSFVV 476
Query: 493 HVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYI-EANRPREVTALLRDARS 551
VI CISLG L+QAHDLLDEM +G+R SS+Y+SLLKAY E ++TALL+DA+
Sbjct: 477 QVINACISLGLLEQAHDLLDEMRFSGIRVGSSIYSSLLKAYCKEGQHEDDITALLKDAQQ 536
Query: 552 AGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611
AGIQLDASCYE L+QS+ +T GALHLFKE+K + ++GH+EF+ LV+G N EA
Sbjct: 537 AGIQLDASCYEDLIQSRANHSNTTGALHLFKELKNLNVLKAGHKEFQRLVQGSDDN-EAA 595
Query: 612 LMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSM 671
LM KL++EV+ G +D VH+WNNVIHFFCKKRLM DA +AL +MR+ GH+PNAQTFHS+
Sbjct: 596 LMTKLVEEVRSGDIVDHAVHEWNNVIHFFCKKRLMHDAHRALNKMRASGHVPNAQTFHSL 655
Query: 672 VTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMM 731
+T YAAIGGKY EVT+LWGEMK ASS+SM FD+ELLDS+LY FVRGGFF RA EV+ MM
Sbjct: 656 ITAYAAIGGKYVEVTDLWGEMKLLASSSSMKFDQELLDSLLYCFVRGGFFLRAMEVIDMM 715
Query: 732 EEGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQTEAQLKKREAALGFKKWLGL 783
E+ +MFIDKYKY++L+LKYH+TLYKGK PK QTEAQLK+REAA+ FKKW+GL
Sbjct: 716 EKREMFIDKYKYKSLWLKYHRTLYKGKAPKVQTEAQLKRREAAIHFKKWIGL 767
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413934189|gb|AFW68740.1| hypothetical protein ZEAMMB73_971808 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/712 (59%), Positives = 536/712 (75%), Gaps = 15/712 (2%)
Query: 76 FSSMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSF 135
FS++ GTILVQA DP++L+ EIENAI++ R+ DAW+ YE+H+ MDG PRK++++K++T
Sbjct: 67 FSTVTGTILVQAHDPSQLAMEIENAIDQQRFDDAWRAYEKHVHMDGLPRKSVLSKLITGL 126
Query: 136 VESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATE 195
ES D WL+++Y +V AFEE KQ LL+KEPLIYLSL L+ C LP A ++RKLV E
Sbjct: 127 AESCDHHWLKQSYNVVSHAFEE-KQELLDKEPLIYLSLILAHCALPNLALNVVRKLVKME 185
Query: 196 QYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNT 255
YPPV AWSAILAHM T GA+L A+L++E+GYLFQ+ RVDPRKK N PL++MKPN+ T
Sbjct: 186 AYPPVAAWSAILAHMCQTNTGAFLGADLVMELGYLFQNNRVDPRKKSNRPLLSMKPNSFT 245
Query: 256 FNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHID 315
FNI L L+F TTRKAEQLL++MPRIGVK + NLLI+MAHIYERNGRR+E+RKL+RH+D
Sbjct: 246 FNIVLTASLVFGTTRKAEQLLELMPRIGVKPEVNLLIVMAHIYERNGRRDEIRKLKRHVD 305
Query: 316 EAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGV 375
EA LS+ + RQFY+CLLSCHLKFGD + A MVL+M+++ K A+ SL AA A V
Sbjct: 306 EAYGLSESEVRQFYDCLLSCHLKFGDFDYAVDMVLDMIRKGKNAKRSLEAAKAVLEA--V 363
Query: 376 NNRT---PSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGM 432
NR P E+ D EN + +LS+ F KD F LE + + ++ L
Sbjct: 364 ENRKFYFPYEK-------ADAENPRSCSSQMLSHASFFKDNSFGRLELDARESVRLLTDK 416
Query: 433 LQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALG 492
LQ+QV L+ +EHGIL PTE +Y KLVKAFLEA K L FL+KA KE+ VS + + +
Sbjct: 417 LQEQVGLVKSEHGILHPTETMYAKLVKAFLEADKISALASFLVKASKEDSPVSVESSFVV 476
Query: 493 HVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYI-EANRPREVTALLRDARS 551
VI CISLG L+QAHDLLDEM +G+R SS+Y+SLLKAY E ++TALL+DA+
Sbjct: 477 QVINACISLGLLEQAHDLLDEMRFSGIRVGSSIYSSLLKAYCKEGQHEDDITALLKDAQQ 536
Query: 552 AGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611
AGIQLD+SCYE L+QS++ +T GALHLFKE+K + ++GH EF+ +V+G N EA
Sbjct: 537 AGIQLDSSCYEDLIQSRVNHSNTTGALHLFKELKNLNVLKAGHMEFQRIVQGSDDN-EAA 595
Query: 612 LMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSM 671
LM KL++EV+ +D VH+WNNVIHFFCKKRLM DA +AL +MR+ GH+PNAQTFHS+
Sbjct: 596 LMTKLVEEVRSDHTVDHAVHEWNNVIHFFCKKRLMHDAHRALNKMRASGHVPNAQTFHSL 655
Query: 672 VTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMM 731
+T YAAIGGKY EVT+LWGEMK AS +SM FD+ELLDS+LY FVRGGFF RA EV+ MM
Sbjct: 656 ITAYAAIGGKYVEVTDLWGEMKLLASLSSMKFDQELLDSLLYCFVRGGFFLRAMEVIEMM 715
Query: 732 EEGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQTEAQLKKREAALGFKKWLGL 783
E+ +MFIDKYKY++L+LKYH+TLYKGK PK QTEAQLK+REAA+ FKKW+GL
Sbjct: 716 EKREMFIDKYKYKSLWLKYHRTLYKGKAPKVQTEAQLKRREAAIRFKKWIGL 767
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297727589|ref|NP_001176158.1| Os10g0422566 [Oryza sativa Japonica Group] gi|255679411|dbj|BAH94886.1| Os10g0422566, partial [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/755 (56%), Positives = 551/755 (72%), Gaps = 10/755 (1%)
Query: 31 RHQIQSARSQWLGFEPILVRCYLTYLNMQTGVL-PNLNEFTYPTHPFSSMGGTILVQARD 89
RH I +LG +C T G L LN +Y S++ TILVQA D
Sbjct: 41 RHLIGHESPHFLG-----SKCCWTNRTGAIGFLNTKLNIGSYGP-CLSTLTETILVQAHD 94
Query: 90 PAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYG 149
P+ L+ EIENAI++ R+ DAW+ YE+H+ MDG PRK++++K++T F E+ D+ WL ++Y
Sbjct: 95 PSLLALEIENAIDQQRFDDAWRAYEKHIHMDGVPRKSVLSKLITGFAETCDAHWLNQSYN 154
Query: 150 LVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAH 209
+V AFEE K LLEKEPLI+LSL L++ LP + ++RKL+ E YPPV AWSAI+AH
Sbjct: 155 VVNHAFEE-KSKLLEKEPLIFLSLALARSSLPNLSINVVRKLIKMEAYPPVAAWSAIVAH 213
Query: 210 MSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETT 269
M TA GA+LAA++++EIGYLFQ+ RVDPRKK N PL+ MKPN+ TFNI L LLF TT
Sbjct: 214 MCQTATGAFLAADMVMEIGYLFQNNRVDPRKKSNRPLLLMKPNSLTFNIILTASLLFGTT 273
Query: 270 RKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFY 329
+KAEQLL++MPRIG+K D + LI+MA IYE+NG R+E++KL+RH++EA LS+ + RQFY
Sbjct: 274 KKAEQLLELMPRIGLKPDVSSLIVMARIYEQNGHRDEIQKLRRHVNEACGLSESELRQFY 333
Query: 330 NCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTN 389
+CLLSCHLKFGDL+SA M+L+ML++ K + SL AA AV N + N
Sbjct: 334 DCLLSCHLKFGDLDSAVDMILDMLKKGKNTKRSLEAAKAVLEAVENNKIYLPYEKTKPVN 393
Query: 390 SVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP 449
S S ++ +L+Y F KD+ F LE + + +L+ L LQ+QV L+ +E+GIL P
Sbjct: 394 SGSSNKSVCTDSQMLNYISFFKDKSFARLELDARELLKLLSDKLQEQVGLVKSEYGILYP 453
Query: 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHD 509
TE +Y KLVKAFLEA K L FL+KA KE+ VS + + + VI CISLGWL+QAHD
Sbjct: 454 TETMYAKLVKAFLEANKISALASFLVKASKEDSPVSVESSFVVQVINACISLGWLEQAHD 513
Query: 510 LLDEMHLAGVRASSSVYASLLKAYI-EANRPREVTALLRDARSAGIQLDASCYEALLQSK 568
LLDEM +G+R S++Y+SLLKAY E + ++ ALL+DA+ AGIQLD SCYE L+QS+
Sbjct: 514 LLDEMRFSGIRVGSTIYSSLLKAYCKEGHHEDDIAALLKDAQQAGIQLDPSCYEDLIQSR 573
Query: 569 IVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC 628
+T GAL+LFKE+K I ++G EFEMLV+GC N+ A L KL++EV+ G ++
Sbjct: 574 AHHNNTTGALNLFKELKSLNILKAGQNEFEMLVQGC-NNNGAALTTKLVEEVRSGHPVNH 632
Query: 629 GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTEL 688
+HDWNNVIHFFCKKRLM DA KAL +M++LGH PNAQTFHS+VTGYAA+GGKY EVT+L
Sbjct: 633 AIHDWNNVIHFFCKKRLMHDAHKALGKMKALGHTPNAQTFHSLVTGYAAVGGKYVEVTDL 692
Query: 689 WGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFL 748
WGEMK A+S+SMNFD+ELLDS+LY FVRGGFF RA EV+ MME+GKMFIDKYKY++L+L
Sbjct: 693 WGEMKVLATSSSMNFDQELLDSLLYCFVRGGFFLRAMEVIEMMEKGKMFIDKYKYKSLWL 752
Query: 749 KYHKTLYKGKTPKFQTEAQLKKREAALGFKKWLGL 783
KYH+TLYKGK PK QTEAQLK+REAAL FK+W+GL
Sbjct: 753 KYHRTLYKGKAPKVQTEAQLKRREAALHFKRWIGL 787
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326516602|dbj|BAJ92456.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/709 (58%), Positives = 530/709 (74%), Gaps = 3/709 (0%)
Query: 76 FSSMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSF 135
FS+ T+LVQARDP+ L++EIE AI++ R+ DAW+ YE+H+ MDG PRK++++K++T F
Sbjct: 68 FSTATETVLVQARDPSLLASEIEAAIDQQRFDDAWRAYEKHLHMDGLPRKSVLSKLITGF 127
Query: 136 VESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATE 195
+ D+ L ++Y +V F E + LLEKE LIYLSL L++ LP A ++RKLV E
Sbjct: 128 AATCDAHRLNQSYSVVNHTFRERPE-LLEKEALIYLSLVLARYALPDLAVNVVRKLVKIE 186
Query: 196 QYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNT 255
YPPV AWSA++AHM TA G++LAA++++EIGYLFQ+ RVDPRKK N PL+AMKPN+ T
Sbjct: 187 AYPPVAAWSAVIAHMCQTATGSFLAADMVMEIGYLFQNNRVDPRKKSNRPLLAMKPNSFT 246
Query: 256 FNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHID 315
FNI L LLF TT+KAEQLL++MPRIGVK +++LL++MA IYE+NG ++E+ KL+RH+D
Sbjct: 247 FNIVLTASLLFGTTKKAEQLLELMPRIGVKPEASLLVVMARIYEKNGHKDEIHKLKRHVD 306
Query: 316 EAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGV 375
EA LS+ +FRQ+Y+CLLSCHLKFGDL+SA MVL+ML++ A+ SL AA AV
Sbjct: 307 EACGLSESEFRQYYDCLLSCHLKFGDLDSAVDMVLDMLKKGNNAKRSLEAAKAVLEAVES 366
Query: 376 NNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQK 435
N Q + NS L ++ +L+Y F KD+ F LE E + +L+ L LQ
Sbjct: 367 NKIYLPCQKADPENSGFLNKPVSTDHQMLNYASFFKDKSFARLELEARELLKLLSDKLQG 426
Query: 436 QVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVI 495
QV L+ +EHG+L PTE Y KLVK FLEA K L FL+KA KE+ VS + + + VI
Sbjct: 427 QVGLVKSEHGVLHPTETTYAKLVKTFLEADKISALASFLVKASKEDSPVSVESSFVVQVI 486
Query: 496 TLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYI-EANRPREVTALLRDARSAGI 554
CISLG L+QAHDLLDEM +GVR SS+Y+SLLKAY E N ++TALL+DA+ AGI
Sbjct: 487 NACISLGLLEQAHDLLDEMRFSGVRVGSSIYSSLLKAYCKEGNHEDDITALLKDAQQAGI 546
Query: 555 QLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMA 614
QLD+SCYE L++S+ +T GALHLFKEMK S I +S ++EFEMLV+ C N+EA L A
Sbjct: 547 QLDSSCYEDLIKSRAHHNNTTGALHLFKEMKSSNIKKSVNREFEMLVQSC-DNNEAALTA 605
Query: 615 KLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTG 674
KL++EVK G ++ +HDWNNVIHFFCKKRLM DA KAL +MR LGH PNAQTFHS+VT
Sbjct: 606 KLVEEVKSGHTVNHAIHDWNNVIHFFCKKRLMHDAHKALSKMRVLGHTPNAQTFHSLVTA 665
Query: 675 YAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEG 734
YAA+GGKY EVT+LWGEMK A+S SM FD+ELLDS+LY FVRGGFF RA EV+ +ME
Sbjct: 666 YAAVGGKYVEVTDLWGEMKVLANSNSMKFDQELLDSLLYCFVRGGFFLRAMEVIELMESS 725
Query: 735 KMFIDKYKYRTLFLKYHKTLYKGKTPKFQTEAQLKKREAALGFKKWLGL 783
K+FIDKYKY++L+LKYH+TLYKGK PK QTEAQL +REAAL FKKW+GL
Sbjct: 726 KLFIDKYKYKSLWLKYHRTLYKGKAPKVQTEAQLIRREAALRFKKWIGL 774
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 784 | ||||||
| TAIR|locus:2007549 | 793 | AT1G03100 "AT1G03100" [Arabido | 0.973 | 0.962 | 0.660 | 1.1e-266 | |
| TAIR|locus:2026454 | 658 | AT1G69290 "AT1G69290" [Arabido | 0.411 | 0.490 | 0.362 | 1.8e-75 | |
| TAIR|locus:2205440 | 619 | AT1G68980 "AT1G68980" [Arabido | 0.406 | 0.515 | 0.316 | 2.6e-65 | |
| TAIR|locus:4515103412 | 674 | AT4G17616 "AT4G17616" [Arabido | 0.327 | 0.381 | 0.307 | 9.7e-55 | |
| TAIR|locus:2074924 | 778 | HCF152 "HIGH CHLOROPHYLL FLUOR | 0.552 | 0.556 | 0.259 | 4.7e-32 | |
| TAIR|locus:2195047 | 621 | AT1G12620 [Arabidopsis thalian | 0.375 | 0.473 | 0.271 | 9.8e-14 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.376 | 0.458 | 0.269 | 6e-13 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.375 | 0.389 | 0.25 | 7.6e-13 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.359 | 0.442 | 0.258 | 2.6e-12 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.376 | 0.476 | 0.249 | 4.5e-11 |
| TAIR|locus:2007549 AT1G03100 "AT1G03100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2565 (908.0 bits), Expect = 1.1e-266, P = 1.1e-266
Identities = 511/774 (66%), Positives = 615/774 (79%)
Query: 18 LFNDSCQNAAWVSRHQIQSARSQWLGFEPILVRCYLTYLNMQTGVLPNLNEFTYPTH--- 74
LF +A V+ Q Q++ L + +L YL++ T + + H
Sbjct: 22 LFRGVLIHAIEVTGTQSQASLQHGLAGKAVLSNA--KYLSVLTRFRTSTRFDVWSIHRRE 79
Query: 75 PFSSMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTS 134
SS+ G+IL+QARDPAKL+ EI+ A++EHR +AW+L+EQHMQM+GFPRK++VN ++
Sbjct: 80 AISSISGSILLQARDPAKLNEEIQIAVDEHRCDEAWRLFEQHMQMEGFPRKSVVNNVVVC 139
Query: 135 FVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVAT 194
F ESLDS WL+K Y LVEQA+EEGKQ LLEKEPL+YLSL L+K G+ VPASTILRKLV T
Sbjct: 140 FAESLDSNWLQKGYSLVEQAYEEGKQNLLEKEPLLYLSLALAKSGMAVPASTILRKLVET 199
Query: 195 EQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTN 254
E+YP V+AWSA+LAHMSL G+YL+AEL+LEIGYLF + RVDPRKK NAPL+AMKPNT
Sbjct: 200 EEYPHVSAWSAVLAHMSLAGSGSYLSAELVLEIGYLFHNNRVDPRKKSNAPLLAMKPNTQ 259
Query: 255 TFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHI 314
N+ALAGCLLF TTRKAEQLLD++P+IGVKAD+NLL+IMAHIYERNGRREELRKLQRHI
Sbjct: 260 VLNVALAGCLLFGTTRKAEQLLDMIPKIGVKADANLLVIMAHIYERNGRREELRKLQRHI 319
Query: 315 DEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVG 374
DEA NL++ QF QFYNCLL CHLKFGDL SASKMVLEML+R K ARNSL AA+L F+
Sbjct: 320 DEACNLNESQFWQFYNCLLMCHLKFGDLESASKMVLEMLRRGKVARNSLGAAILEFDTAD 379
Query: 375 VNNRTPSEQNVNCTNSV---DLENSGIIENH-ILSYEDFTKDRKFVALEAEVKRVLQTLL 430
+ R +++ + V D + ++ H ++ Y++F++DRKF+ LEAE K VL LL
Sbjct: 380 -DGRLYTKRVSGKGSEVKEHDNPETRVVSIHSMIPYDEFSRDRKFLKLEAEAKDVLGALL 438
Query: 431 GMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAA 490
L QVELIT+E G+LQPTE+IY+KL KAFLE+GK KEL FL+KAE E+ VS D++
Sbjct: 439 AKLHVQVELITSERGVLQPTEEIYVKLAKAFLESGKMKELAKFLLKAEHEDSPVSSDNSM 498
Query: 491 LGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDAR 550
L +VI CISLG LDQAHDLLDEM +AGVR SSVY+SLLKAY N+ REVT+LLRDA+
Sbjct: 499 LINVINACISLGMLDQAHDLLDEMRMAGVRTGSSVYSSLLKAYCNTNQTREVTSLLRDAQ 558
Query: 551 SAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEA 610
AGIQLD+SCYEAL+QS+++Q DT GAL++FKEMKE+KI R G+Q+FE L+KGC N EA
Sbjct: 559 KAGIQLDSSCYEALIQSQVIQNDTHGALNVFKEMKEAKILRGGNQKFEKLLKGCEGNAEA 618
Query: 611 GLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHS 670
GLM+KLL+E++E Q +D GVHDWNNVIHFF KK LMQDAEKALKRMRSLGH PNAQTFHS
Sbjct: 619 GLMSKLLREIREVQSLDAGVHDWNNVIHFFSKKGLMQDAEKALKRMRSLGHSPNAQTFHS 678
Query: 671 MVTGYAAIGGKYTEVTELWGEMKSFASSTS-MNFDEELLDSVLYTFVRGGFFARANEVVA 729
MVTGYAAIG KYTEVTELWGEMKS A++TS M FD+ELLD+VLYTFVRGGFF+RANEVV
Sbjct: 679 MVTGYAAIGSKYTEVTELWGEMKSIAAATSSMKFDQELLDAVLYTFVRGGFFSRANEVVE 738
Query: 730 MMEEGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQTEAQLKKREAALGFKKWLGL 783
MME+ MF+DKYKYR LFLKYHKT YKGK PK Q+E+QLKKREA L FKKWLGL
Sbjct: 739 MMEKKNMFVDKYKYRMLFLKYHKTAYKGKAPKVQSESQLKKREAGLVFKKWLGL 792
|
|
| TAIR|locus:2026454 AT1G69290 "AT1G69290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 558 (201.5 bits), Expect = 1.8e-75, Sum P(3) = 1.8e-75
Identities = 122/337 (36%), Positives = 190/337 (56%)
Query: 454 YIKLVKAFLEAGKTKELTHFLIKAEK-ENLQVSHDDAALGHVITLCISLGWLDQAHDLLD 512
Y +LVK F+E+ K L +++A+K E+ V D + +I C++LG+ D+AH +L+
Sbjct: 327 YCELVKGFIESKSVKSLAKVILEAQKLESSYVGVDSSVGFGIINACVNLGFSDKAHSILE 386
Query: 513 EMHL-AGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQ 571
EM G VY +LKAY + R E T L+ + S+G+QLD AL+++ +
Sbjct: 387 EMIAQGGGSVGIGVYVPILKAYCKEYRTAEATQLVTEISSSGLQLDVEISNALIEASMTN 446
Query: 572 KDTPGALHLFKEMKESKI-PRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGV 630
+D A LF++M+E+++ G + ++ G +N LMA L EV E R++
Sbjct: 447 QDFISAFTLFRDMRENRVVDLKG--SYLTIMTGLLENQRPELMAAFLDEVVEDPRVEVNS 504
Query: 631 HDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWG 690
HDWN++IH FCK ++DA + +RM L + PN QT+ S++ GY + G KY V LW
Sbjct: 505 HDWNSIIHAFCKSGRLEDARRTFRRMVFLRYEPNNQTYLSLINGYVS-GEKYFNVLLLWN 563
Query: 691 EMKSFASSTSMN----FDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTL 746
E+K SS D L+D+ LY V+GGFF A +VV +E K+F+DK++Y+
Sbjct: 564 EIKGKISSVEAEKRSRLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKWRYKQA 623
Query: 747 FLKYHKTLYKGKTPKFQTEAQLKKREAALGFKKWLGL 783
F++ HK L + PK + + KK E+ + FK W GL
Sbjct: 624 FMETHKKL---RLPKLR-KRNYKKMESLVAFKNWAGL 656
|
|
| TAIR|locus:2205440 AT1G68980 "AT1G68980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 105/332 (31%), Positives = 184/332 (55%)
Query: 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGH-VITLCISLGWLDQAH 508
+E+ Y +LV+ F+E+ + L +I+A+K + ++G ++ C+ LG+ ++
Sbjct: 295 SEETYCELVRGFIESKSVESLAKLIIEAQKLESMSTDVGGSVGFGIVNACVKLGFSGKS- 353
Query: 509 DLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSK 568
+LDE++ G VY +LKAY + R E T L+ + S+G+QLD Y ++++
Sbjct: 354 -ILDELNAQGGSGGIGVYVPILKAYCKEGRTSEATQLVTEISSSGLQLDVETYNTMIEAS 412
Query: 569 IVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC 628
+ + D AL LF++M+E+++ + + ++ G +N LMA+ ++EV E R++
Sbjct: 413 MTKHDFLSALTLFRDMRETRVADL-KRCYLTIMTGLLENQRPELMAEFVEEVMEDPRVEV 471
Query: 629 GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTEL 688
HDWN++IH FCK + DA+ +RM L + PN QT+ S++ GY + KY EV +
Sbjct: 472 KSHDWNSIIHAFCKSGRLGDAKSTFRRMTFLQYEPNNQTYLSLINGYVSCE-KYFEVVVI 530
Query: 689 WGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFL 748
W E K + L D+ L V+GGFF A +V+ +E K+F+DK++Y+ F+
Sbjct: 531 WKEFKD----KKAKLEHALADAFLNALVKGGFFGTALQVIEKCQEMKIFVDKWRYKATFM 586
Query: 749 KYHKTLYKGKTPKFQTEAQLKKREAALGFKKW 780
+ K L + PK + + ++KK E FK W
Sbjct: 587 ETQKNL---RLPKLR-KRKMKKIEFLDAFKNW 614
|
|
| TAIR|locus:4515103412 AT4G17616 "AT4G17616" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 352 (129.0 bits), Expect = 9.7e-55, Sum P(2) = 9.7e-55
Identities = 80/260 (30%), Positives = 141/260 (54%)
Query: 93 LSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVE 152
L ++E A+ +HR DAW +++ ++ GFP ++N+ +T S D+ WL KA L
Sbjct: 57 LKKKLETALKDHRVDDAWDVFKDFKRLYGFPESVIMNRFVTVLSYSSDAGWLCKASDLTR 116
Query: 153 QAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSL 212
A ++ +L + L LSL L++ + A +ILR ++ ++ HM
Sbjct: 117 LALKQNPG-MLSGDVLTKLSLSLARAQMVESACSILRIMLEKGYVLTSDVLRLVVMHMVK 175
Query: 213 TAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKA 272
T G LA+ ++++ F + V R ++P +KP+T FN+ L C+ F + K
Sbjct: 176 TEIGTCLASNYLVQVCDRFVEFNVGKRN--SSPGNVVKPDTVLFNLVLGSCVRFGFSLKG 233
Query: 273 EQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCL 332
++L+++M ++ V AD+ ++IM+ IYE NG R+ELRK + HI + ++ F++ L
Sbjct: 234 QELIELMAKVDVVADAYSIVIMSCIYEMNGMRDELRKFKEHIGQVPPQLLGHYQHFFDNL 293
Query: 333 LSCHLKFGDLNSASKMVLEM 352
LS KF D+ SA ++ L+M
Sbjct: 294 LSLEFKFDDIGSAGRLALDM 313
|
|
| TAIR|locus:2074924 HCF152 "HIGH CHLOROPHYLL FLUORESCENCE 152" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 385 (140.6 bits), Expect = 4.7e-32, Sum P(2) = 4.7e-32
Identities = 122/470 (25%), Positives = 221/470 (47%)
Query: 332 LLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSV 391
L++ ++ FGDL +A ++V Q +E R L + NA + + E +
Sbjct: 312 LVAAYVGFGDLRTAERIV----QAMREKRRDLCKVLRECNAEDLKEKEEEEAEDDEDAFE 367
Query: 392 DLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTE 451
D E+SG S D + V + K++L + + L+ + P
Sbjct: 368 DDEDSGY------SARDEVSEEGVVDV---FKKLLPNSVDP-SGEPPLLPK---VFAPDS 414
Query: 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSH-DDAALGHVITLCISLGWLDQAHDL 510
+IY L+K +++ G+ + L +++ + SH D+ V++ ++ G +D+A +
Sbjct: 415 RIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQV 474
Query: 511 LDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRD-ARSAGIQLDASCYEALLQSKI 569
L EM GV A+ Y LLK Y + + LLR+ AGI+ D Y ++ I
Sbjct: 475 LAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCI 534
Query: 570 VQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG 629
+ D+ GAL F EM+ I + + L+K A + + L ++ E+ R+
Sbjct: 535 LIDDSAGALAFFNEMRTRGIAPT-KISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVD 593
Query: 630 VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELW 689
+ WN ++ +C+ L++DA++ + RM+ G PN T+ S+ G + K + LW
Sbjct: 594 LIAWNMLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQ-ARKPGDALLLW 652
Query: 690 GEMK-----------SFASSTS----MNFDEELLDSVLYTFVRGGFFARANEVVAMMEEG 734
E+K S +SS + DE LLD++ VR FF +A E++A MEE
Sbjct: 653 KEIKERCAVKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEEN 712
Query: 735 KMFIDKYKYRTLFLKYHKTLYKGK-TPKFQTEAQLKKREAALGFKKWLGL 783
+ +K KY+ ++++ H ++ K + + + +++++ AA FK WLGL
Sbjct: 713 GIPPNKTKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGL 762
|
|
| TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 213 (80.0 bits), Expect = 9.8e-14, P = 9.8e-14
Identities = 87/320 (27%), Positives = 146/320 (45%)
Query: 429 LLGMLQKQVELIT--TEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSH 486
L G + V LI E G QP E Y ++K ++G+T L K E+ +++
Sbjct: 189 LNGKVSDAVLLIDRMVETGF-QPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKL-- 245
Query: 487 DDAALGHVIT--LCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTA 544
DA +I LC G LD A +L +EM + G +A +Y +L++ + A R +
Sbjct: 246 -DAVKYSIIIDGLCKD-GSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAK 303
Query: 545 LLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG- 603
LLRD I D + AL+ + + A L KEM + I + L+ G
Sbjct: 304 LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDT-VTYTSLIDGF 362
Query: 604 CAQNH--EAGLMAKLLQEVKEGQRIDCG--VHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659
C +N +A M L+ V +G CG + +N +I+ +CK L+ D + ++M
Sbjct: 363 CKENQLDKANHMLDLM--VSKG----CGPNIRTFNILINGYCKANLIDDGLELFRKMSLR 416
Query: 660 GHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGG 719
G + + T+++++ G+ +G K EL+ EM S + + LLD + G
Sbjct: 417 GVVADTVTYNTLIQGFCELG-KLEVAKELFQEMVSRRVRPDIVSYKILLDGLC----DNG 471
Query: 720 FFARANEVVAMMEEGKMFID 739
+A E+ +E+ KM +D
Sbjct: 472 EPEKALEIFEKIEKSKMELD 491
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 206 (77.6 bits), Expect = 6.0e-13, P = 6.0e-13
Identities = 86/319 (26%), Positives = 142/319 (44%)
Query: 429 LLGMLQKQVELIT--TEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSH 486
L G + V LI E G QP E Y ++ ++G+T L K E+ N+++
Sbjct: 205 LNGKVSDAVVLIDRMVETGF-QPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL-- 261
Query: 487 DDAALGHVIT--LCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTA 544
DA +I LC G LD A +L +EM + G +A Y +L+ + A R +
Sbjct: 262 -DAVKYSIIIDGLCKD-GSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAK 319
Query: 545 LLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKI-PRSGHQEFEMLVKG 603
LLRD I + + L+ S + + A L KEM + I P + + L+ G
Sbjct: 320 LLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNT--ITYNSLIDG 377
Query: 604 -CAQNH--EAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLG 660
C +N EA M L+ + +G D + +N +I+ +CK + D + + M G
Sbjct: 378 FCKENRLEEAIQMVDLM--ISKG--CDPDIMTFNILINGYCKANRIDDGLELFREMSLRG 433
Query: 661 HLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGF 720
+ N T++++V G+ GK +L+ EM S + + LLD + G
Sbjct: 434 VIANTVTYNTLVQGFCQ-SGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLC----DNGE 488
Query: 721 FARANEVVAMMEEGKMFID 739
+A E+ +E+ KM +D
Sbjct: 489 LEKALEIFGKIEKSKMELD 507
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 191 (72.3 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
Identities = 79/316 (25%), Positives = 140/316 (44%)
Query: 437 VELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD-DA-ALGHV 494
++ ++ + G P + + LV +AG K H I+ LQ +D D V
Sbjct: 282 IQEMSNQDGFF-PDQYTFNTLVNGLCKAGHVK---H-AIEIMDVMLQEGYDPDVYTYNSV 336
Query: 495 IT-LCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAG 553
I+ LC LG + +A ++LD+M ++ Y +L+ + N+ E T L R S G
Sbjct: 337 ISGLC-KLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 395
Query: 554 IQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG-CAQNHEAGL 612
I D + +L+Q + ++ A+ LF+EM+ SK + ML+ C++ G
Sbjct: 396 ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMR-SKGCEPDEFTYNMLIDSLCSK----GK 450
Query: 613 MAKLLQEVKEGQRIDCG--VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHS 670
+ + L +K+ + C V +N +I FCK ++AE+ M G N+ T+++
Sbjct: 451 LDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510
Query: 671 MVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAM 730
++ G + + +L +M D+ +S+L F RGG +A ++V
Sbjct: 511 LIDGLCK-SRRVEDAAQLMDQMIMEGQKP----DKYTYNSLLTHFCRGGDIKKAADIVQA 565
Query: 731 MEEGKMFIDKYKYRTL 746
M D Y TL
Sbjct: 566 MTSNGCEPDIVTYGTL 581
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 200 (75.5 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 78/302 (25%), Positives = 136/302 (45%)
Query: 443 EHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVIT--LCIS 500
E+G QP Y ++ ++G+T L K E+ N+++ DA +I LC
Sbjct: 221 EYGC-QPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL---DAVKYSIIIDGLC-K 275
Query: 501 LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASC 560
G LD A +L +EM + G+ + Y L+ + A R + LLRD I +
Sbjct: 276 HGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT 335
Query: 561 YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG-CAQNH--EAGLMAKLL 617
+ L+ S + + A L KEM I + L+ G C +NH +A M L+
Sbjct: 336 FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTIT-YTSLIDGFCKENHLDKANQMVDLM 394
Query: 618 QEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA 677
V +G D + +N +I+ +CK + D + ++M G + + T+++++ G+
Sbjct: 395 --VSKG--CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 450
Query: 678 IGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMF 737
+G K EL+ EM S ++ + LLD + G +A E+ +E+ KM
Sbjct: 451 LG-KLNVAKELFQEMVSRKVPPNIVTYKILLDGLC----DNGESEKALEIFEKIEKSKME 505
Query: 738 ID 739
+D
Sbjct: 506 LD 507
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 195 (73.7 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 78/313 (24%), Positives = 139/313 (44%)
Query: 429 LLGMLQKQVELIT--TEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSH 486
L G + + + LI E+G QP E Y ++ ++G + K E+ N++ S
Sbjct: 187 LKGRVSEALVLIDRMVEYGF-QPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASV 245
Query: 487 DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALL 546
++ + +LC G D A L +EM + G++A Y+SL+ + + +L
Sbjct: 246 VQYSIV-IDSLCKD-GSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKML 303
Query: 547 RDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG-CA 605
R+ I D + AL+ + + A L+ EM I + L+ G C
Sbjct: 304 REMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTIT-YNSLIDGFCK 362
Query: 606 QN--HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP 663
+N HEA M L+ V +G D + ++ +I+ +CK + + D + + + S G +P
Sbjct: 363 ENCLHEANQMFDLM--VSKGCEPD--IVTYSILINSYCKAKRVDDGMRLFREISSKGLIP 418
Query: 664 NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFAR 723
N T++++V G+ GK EL+ EM S S+ LLD + G +
Sbjct: 419 NTITYNTLVLGFCQ-SGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC----DNGELNK 473
Query: 724 ANEVVAMMEEGKM 736
A E+ M++ +M
Sbjct: 474 ALEIFEKMQKSRM 486
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SA60 | PPR6_ARATH | No assigned EC number | 0.6998 | 0.9017 | 0.8915 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 784 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 1e-07
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 633 WNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYA 676
+N +I +CKK +++A K M+ G PN T+ ++ G
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 633 WNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA 665
+N +I CK +++A + K M+ G P+
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 784 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.83 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.77 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.71 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.54 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.5 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.48 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.45 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.45 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.43 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.42 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.42 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.41 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.41 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.41 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.41 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.4 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.38 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.34 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.34 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.33 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.31 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.3 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.27 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.26 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.26 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.23 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.23 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.21 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.18 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.16 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.16 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.15 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.12 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.12 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.1 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.09 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.08 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.99 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.95 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.94 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.94 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.92 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.9 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.88 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.87 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.85 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.79 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.79 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.77 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.76 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.74 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.73 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.72 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.7 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.64 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.64 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.63 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.58 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.56 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.54 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.53 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.52 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.51 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.5 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.49 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.45 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.43 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.38 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.37 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.27 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.27 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.27 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.26 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.25 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.25 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.23 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.22 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.22 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.21 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.18 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.13 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.12 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.12 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.06 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.05 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.04 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.02 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.01 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.01 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.01 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.95 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.91 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.91 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.89 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.88 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.88 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.86 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.81 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.79 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.77 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.7 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.69 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.66 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.66 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.63 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.63 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.62 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.6 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.53 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.5 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.46 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.45 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.42 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.36 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.26 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.17 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.16 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.16 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.15 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.12 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.1 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.08 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.06 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.03 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.01 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.0 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.95 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.94 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.86 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.86 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.78 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.76 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.76 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.75 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.7 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.61 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.59 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.55 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.48 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.47 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.43 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.41 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.4 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.39 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.34 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.32 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.31 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.27 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.23 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.14 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.1 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.09 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.02 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.98 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.98 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.96 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.78 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.74 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.69 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.6 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.54 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.5 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.49 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 95.46 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.45 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.34 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.27 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.24 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.23 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.21 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.18 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.14 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.06 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.05 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.03 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.93 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.81 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.8 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.7 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.51 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.22 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.2 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.11 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 93.93 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.91 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.73 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 93.63 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 93.53 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.37 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.35 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.34 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.31 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.25 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.19 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.08 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.84 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.57 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 92.49 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.3 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.06 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.97 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 91.79 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.73 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.67 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.52 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.5 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.48 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.48 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.34 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.11 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.09 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.08 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.05 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.94 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 90.93 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 90.68 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 90.54 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 89.91 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 89.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.81 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 89.8 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.17 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.8 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 88.75 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.71 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.67 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.61 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 88.27 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.87 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.85 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 87.32 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.1 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 86.0 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 85.09 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 84.79 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.94 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 83.8 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.71 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 83.69 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 83.21 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 82.66 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.65 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 82.47 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 82.13 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 82.1 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.79 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 81.15 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 81.07 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 81.01 | |
| PF14669 | 233 | Asp_Glu_race_2: Putative aspartate racemase | 80.99 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 80.63 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-74 Score=675.95 Aligned_cols=580 Identities=13% Similarity=0.100 Sum_probs=451.4
Q ss_pred CChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccch
Q 003946 88 RDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEP 167 (784)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 167 (784)
+++.++|.+|..|++.|+++.|+++|++|.+ ||.++|+.++.+|++.|+ .++|++++.+|... +..|+..+
T Consensus 119 ~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~---~~~A~~~f~~M~~~--g~~Pd~~t 189 (857)
T PLN03077 119 LGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGY---FDEALCLYHRMLWA--GVRPDVYT 189 (857)
T ss_pred CCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCC---HHHHHHHHHHHHHc--CCCCChhH
Confidence 4555666666666666666666666666654 566666666666665433 34455566665543 23344555
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccccccc
Q 003946 168 LIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLI 247 (784)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~ 247 (784)
|+.++.+|++.++++.+.+++..|.+.|+.||+.+||+||.+|++. |++++|..+|+ +|.
T Consensus 190 ~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~--------g~~~~A~~lf~--~m~---------- 249 (857)
T PLN03077 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC--------GDVVSARLVFD--RMP---------- 249 (857)
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC--------CCHHHHHHHHh--cCC----------
Confidence 5556666666666666666666666666666666666666666665 55666666666 552
Q ss_pred CCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHH
Q 003946 248 AMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQ 327 (784)
Q Consensus 248 ~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~ 327 (784)
.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.+++..|.+.+...+..
T Consensus 250 --~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~--- 324 (857)
T PLN03077 250 --RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS--- 324 (857)
T ss_pred --CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH---
Confidence 456666666666666666666666666666666666666666666666666666666666666666653332222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchh
Q 003946 328 FYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYE 407 (784)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (784)
+||+||.+|+++|++++|.++|++|..+++++||.++.++...+..
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~---------------------------------- 370 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLP---------------------------------- 370 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCH----------------------------------
Confidence 5666666666666666666666666666666666666555444331
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Q 003946 408 DFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD 487 (784)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~ 487 (784)
.++..++..|. ..++.||..||++++.+|++.|++++|.+++..|.+.| +.|+
T Consensus 371 ------------~~A~~lf~~M~-------------~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g--~~~~ 423 (857)
T PLN03077 371 ------------DKALETYALME-------------QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG--LISY 423 (857)
T ss_pred ------------HHHHHHHHHHH-------------HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC--CCcc
Confidence 12222222221 12379999999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 488 DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS 567 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 567 (784)
..+|++||.+|++.|++++|.++|++|.+ +|..+||++|.+|++.|+.++|..+|++|.+ ++.||..||+.+|.+
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a 498 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSA 498 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHH
Confidence 99999999999999999999999999975 5889999999999999999999999999986 589999999999999
Q ss_pred HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003946 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
|++.|+++.+.+++..+.+.|+.+ +..++++|+.+|++.|++++|.++|+.+ .||..+||+||.+|++.|+.+
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~g~~~-~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRTGIGF-DGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HhhhchHHHhHHHHHHHHHhCCCc-cceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHH
Confidence 999999999999999999999854 5779999999999999999999999987 369999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003946 648 DAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEV 727 (784)
Q Consensus 648 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 727 (784)
+|+++|++|.+.|+.||..||+.+|.+|.+.| ++++|.++|++|.+ +.++.|+..+|++|+++|+++|++++|.++
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~v~ea~~~f~~M~~---~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~ 647 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSG-MVTQGLEYFHSMEE---KYSITPNLKHYACVVDLLGRAGKLTEAYNF 647 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC-hHHHHHHHHHHHHH---HhCCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999 99999999999984 279999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHH--HHHhcccccC-CchhhHHH----------------HHHHHHHHHHhhHhhh
Q 003946 728 VAMMEEGKMFIDKYKYRTLF--LKYHKTLYKG-KTPKFQTE----------------AQLKKREAALGFKKWL 781 (784)
Q Consensus 728 ~~~m~~~g~~pd~~~~~~li--~~~~~~~~~~-~a~~~~~~----------------~~~~~~e~~~~~~~~~ 781 (784)
+++|. ++||..+|++|+ |..+++.+.+ .+++.+.+ ...++|+++.++|+.|
T Consensus 648 ~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 648 INKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred HHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 99995 789999999999 7778888877 66665554 5678999999999887
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-69 Score=618.81 Aligned_cols=524 Identities=15% Similarity=0.167 Sum_probs=481.4
Q ss_pred cCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCC-CCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCc
Q 003946 86 QARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGF-PRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLE 164 (784)
Q Consensus 86 ~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 164 (784)
..++...|..++..|++.|++++|+++|++|.+.+.. |+..+++.++..|.+.|. ..+|+.++..|.. ++
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~---~~eAl~lf~~M~~------pd 436 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRA---VKEAFRFAKLIRN------PT 436 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCC---HHHHHHHHHHcCC------CC
Confidence 3456788999999999999999999999999998865 667778899999988654 4567777776532 67
Q ss_pred cchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccc
Q 003946 165 KEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNA 244 (784)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~ 244 (784)
..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+||+||.+|++. |++++|.++|+ +|..
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~--------G~vd~A~~vf~--eM~~------ 500 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS--------GKVDAMFEVFH--EMVN------ 500 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC--------cCHHHHHHHHH--HHHH------
Confidence 8889999999999999999999999999999999999999999999997 89999999999 9976
Q ss_pred cccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh---cCCC
Q 003946 245 PLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEA---VNLS 321 (784)
Q Consensus 245 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---~~~~ 321 (784)
.|+.||.+|||++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+. ..|+
T Consensus 501 --~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 501 --AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred --cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999863 2344
Q ss_pred hhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccc
Q 003946 322 DIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIEN 401 (784)
Q Consensus 322 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (784)
.. +|++||.+|+++|++++|.++|++|.+.|
T Consensus 579 ~v----TynaLI~ay~k~G~ldeA~elf~~M~e~g--------------------------------------------- 609 (1060)
T PLN03218 579 HI----TVGALMKACANAGQVDRAKEVYQMIHEYN--------------------------------------------- 609 (1060)
T ss_pred HH----HHHHHHHHHHHCCCHHHHHHHHHHHHHcC---------------------------------------------
Confidence 33 79999999999999999999999999866
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003946 402 HILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKEN 481 (784)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 481 (784)
+.|+..+||++|.+|++.|++++|.++|++|.+.|
T Consensus 610 ---------------------------------------------i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 610 ---------------------------------------------IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred ---------------------------------------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 58999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003946 482 LQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561 (784)
Q Consensus 482 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 561 (784)
+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|+++|++++|.++|++|.+.|+.||..+|
T Consensus 645 --v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvty 722 (1060)
T PLN03218 645 --VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722 (1060)
T ss_pred --CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 003946 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFC 641 (784)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~ 641 (784)
|.||.+|++.|++++|+++|++|.+.|+.| +..+|+.++.+|++.|+++.|.++|+.|.+.+ +.||..+|++|+..|.
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIglc~ 800 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999854 58899999999999999999999999998765 8999999999997643
Q ss_pred h----c-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC
Q 003946 642 K----K-------------------RLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS 698 (784)
Q Consensus 642 ~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~ 698 (784)
+ + +..++|..+|++|.+.|+.||..||+.++.+++..+ ..+.+..+++.|..
T Consensus 801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~-~~~~~~~m~~~m~~---- 875 (1060)
T PLN03218 801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPH-DATLRNRLIENLGI---- 875 (1060)
T ss_pred HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccc-cHHHHHHHHHHhcc----
Confidence 2 2 234689999999999999999999999997777777 88888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003946 699 TSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKY 741 (784)
Q Consensus 699 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 741 (784)
.+..|+..+|++||+++.+. .++|..++++|.+.|+.|+..
T Consensus 876 ~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 876 SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 67889999999999998542 478999999999999999996
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-71 Score=645.58 Aligned_cols=595 Identities=14% Similarity=0.160 Sum_probs=518.4
Q ss_pred CCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccc
Q 003946 87 ARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKE 166 (784)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 166 (784)
.+++..+|.+|++|++.|++++|+.+|++|.+.|..|+..+|..++.+|.+.+. ...+..++..+...+ ..++..
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~--~~~~~~ 122 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRA---VEEGSRVCSRALSSH--PSLGVR 122 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCC---HHHHHHHHHHHHHcC--CCCCch
Confidence 567888999999999999999999999999999999999999999999987654 455667777776652 235677
Q ss_pred hHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccc
Q 003946 167 PLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPL 246 (784)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~ 246 (784)
.++.|+.+|+++|+++.|.++|++|.+ ||+++||++|.+|++. |.+++|+++|+ +|..
T Consensus 123 ~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~--------g~~~~A~~~f~--~M~~-------- 180 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKA--------GYFDEALCLYH--RMLW-------- 180 (857)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhC--------CCHHHHHHHHH--HHHH--------
Confidence 889999999999999999999999974 7999999999999997 89999999999 8865
Q ss_pred cCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHH
Q 003946 247 IAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFR 326 (784)
Q Consensus 247 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~ 326 (784)
.|+.||.+||+++|++|++.++++.+.+++..|.+.|+.||..++++||++|+++|++++|.++|++|...+. .
T Consensus 181 ~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~---~--- 254 (857)
T PLN03077 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC---I--- 254 (857)
T ss_pred cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCc---c---
Confidence 7899999999999999999999999999999999999999999999999999999999999999999976432 2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHH----HHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccccc
Q 003946 327 QFYNCLLSCHLKFGDLNSASKMVLEMLQRAK----EARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENH 402 (784)
Q Consensus 327 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (784)
+||+||.+|++.|+.++|+++|++|...|+ ++++.++.++...+ .......++..
T Consensus 255 -s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g--------------------~~~~a~~l~~~ 313 (857)
T PLN03077 255 -SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG--------------------DERLGREMHGY 313 (857)
T ss_pred -hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--------------------ChHHHHHHHHH
Confidence 699999999999999999999999999765 34555555544332 22222222222
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhc----CCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 403 ILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEH----GILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAE 478 (784)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 478 (784)
+...+ ..++..+...+..++.+++.++.+. ....||.++||++|.+|++.|++++|.++|++|.
T Consensus 314 ~~~~g------------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 314 VVKTG------------FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred HHHhC------------CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 11110 0111122222222222222222111 1147899999999999999999999999999999
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 003946 479 KENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDA 558 (784)
Q Consensus 479 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 558 (784)
+.| +.||..||+++|.+|++.|+++.|.++++.|.+.|+.|+..+||+||++|+++|++++|.++|++|. .+|.
T Consensus 382 ~~g--~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~ 455 (857)
T PLN03077 382 QDN--VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDV 455 (857)
T ss_pred HhC--CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCe
Confidence 999 8999999999999999999999999999999999999999999999999999999999999999997 5799
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIH 638 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 638 (784)
.+|+++|.+|++.|+.++|+.+|++|.. ++ +|+..||+.++.+|++.|+++.+.+++..+.+.+ +.||..++|+||+
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~-~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g-~~~~~~~~naLi~ 532 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TL-KPNSVTLIAALSACARIGALMCGKEIHAHVLRTG-IGFDGFLPNALLD 532 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC-CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC-CCccceechHHHH
Confidence 9999999999999999999999999986 44 6678999999999999999999999999998765 8899999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhc
Q 003946 639 FFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRG 718 (784)
Q Consensus 639 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~ 718 (784)
+|+++|++++|.++|++| .||..+|+++|.+|++.| +.++|.++|++|.+ .|+.||..||+.++.+|++.
T Consensus 533 ~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G-~~~~A~~lf~~M~~----~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHG-KGSMAVELFNRMVE----SGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred HHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHH----cCCCCCcccHHHHHHHHhhc
Confidence 999999999999999987 589999999999999999 99999999999998 79999999999999999999
Q ss_pred CChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhcccccCCchhhHHHH
Q 003946 719 GFFARANEVVAMME-EGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQTEA 766 (784)
Q Consensus 719 g~~~~A~~l~~~m~-~~g~~pd~~~~~~li~~~~~~~~~~~a~~~~~~~ 766 (784)
|++++|.++|++|. +.|+.||..+|+.++..+.+.+..++|.+.+.++
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 99999999999999 6799999999999999999999888888877764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=587.23 Aligned_cols=521 Identities=15% Similarity=0.131 Sum_probs=466.8
Q ss_pred CCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCCh
Q 003946 121 GFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPV 200 (784)
Q Consensus 121 ~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 200 (784)
..++...|..++..|++.|+ +++|++++++|... ....++...++.++.+|++.|.+++|..+|+.|.. ||.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~---l~eAl~Lfd~M~~~-gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~ 437 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGR---IKDCIDLLEDMEKR-GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTL 437 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcC---HHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCH
Confidence 34677888899999987654 45688889888765 22223444566789999999999999999999975 899
Q ss_pred HHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhh
Q 003946 201 TAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMP 280 (784)
Q Consensus 201 ~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 280 (784)
.+||.+|.+|++. |++++|.++|+ +|.. .|+.||..+||++|.+|++.|++++|.++|++|.
T Consensus 438 ~Tyn~LL~a~~k~--------g~~e~A~~lf~--~M~~--------~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~ 499 (1060)
T PLN03218 438 STFNMLMSVCASS--------QDIDGALRVLR--LVQE--------AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499 (1060)
T ss_pred HHHHHHHHHHHhC--------cCHHHHHHHHH--HHHH--------cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 9999999999997 88999999999 8876 7899999999999999999999999999999999
Q ss_pred hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 003946 281 RIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVN-LSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEA 359 (784)
Q Consensus 281 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 359 (784)
+.|+.||..||+++|.+|++.|++++|.++|++|.+.+. |+.. +||+||.+|++.|++++|.++|++|...+
T Consensus 500 ~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v----TYnsLI~a~~k~G~~deA~~lf~eM~~~~--- 572 (1060)
T PLN03218 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV----VFNALISACGQSGAVDRAFDVLAEMKAET--- 572 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhc---
Confidence 999999999999999999999999999999999988744 4433 79999999999999999999999998742
Q ss_pred HHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 003946 360 RNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVEL 439 (784)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (784)
T Consensus 573 -------------------------------------------------------------------------------- 572 (1060)
T PLN03218 573 -------------------------------------------------------------------------------- 572 (1060)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003946 440 ITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGV 519 (784)
Q Consensus 440 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 519 (784)
.++.||.++|+++|.+|++.|++++|.++|++|.+.+ +.|+..+|+++|.+|++.|++++|.++|++|.+.|+
T Consensus 573 -----~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv 645 (1060)
T PLN03218 573 -----HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645 (1060)
T ss_pred -----CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 1268999999999999999999999999999999999 799999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHH
Q 003946 520 RASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEM 599 (784)
Q Consensus 520 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 599 (784)
.||..+|++||++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.| +..+|++
T Consensus 646 ~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~ 724 (1060)
T PLN03218 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNA 724 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998754 5889999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--
Q 003946 600 LVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA-- 677 (784)
Q Consensus 600 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~-- 677 (784)
++.+|++.|++++|.++|++|...+ +.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+
T Consensus 725 LI~gy~k~G~~eeAlelf~eM~~~G-i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y 803 (1060)
T PLN03218 725 LITALCEGNQLPKALEVLSEMKRLG-LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRF 803 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765 8899999999999999999999999999999999999999999999876542
Q ss_pred --cC------------------CCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003946 678 --IG------------------GKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMF 737 (784)
Q Consensus 678 --~g------------------~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 737 (784)
.+ ...++|..+|++|.+ .|+.||..||+.++..+++.+..+.+.+++++|...+..
T Consensus 804 ~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~----~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~ 879 (1060)
T PLN03218 804 EKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS----AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADS 879 (1060)
T ss_pred HHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCC
Confidence 11 034679999999998 899999999999999888999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcccccCCchhhHHHHHHH
Q 003946 738 IDKYKYRTLFLKYHKTLYKGKTPKFQTEAQLK 769 (784)
Q Consensus 738 pd~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 769 (784)
|+..+|++||.++.+. ..+|...+.++...
T Consensus 880 ~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 880 QKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred cchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 9999999999776321 12677766665543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-65 Score=582.28 Aligned_cols=474 Identities=14% Similarity=0.165 Sum_probs=432.0
Q ss_pred ChHHHHHHHHHHHhccchhhHHHHHHHhcccC-CCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccch
Q 003946 89 DPAKLSAEIENAINEHRYGDAWKLYEQHMQMD-GFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEP 167 (784)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 167 (784)
+...|+.+|.+|.+.|++++|+++|++|...+ ..||..+|+.++.+|++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~------------------------------ 135 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIA------------------------------ 135 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh------------------------------
Confidence 45578888888888888888888888877644 34666666666666654
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccccccc
Q 003946 168 LIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLI 247 (784)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~ 247 (784)
.++++.|.+++..|.+.|+.||..+||.||.+|++. |++++|.++|+ +|.
T Consensus 136 ----------~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~--------g~~~~A~~lf~--~m~---------- 185 (697)
T PLN03081 136 ----------LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC--------GMLIDARRLFD--EMP---------- 185 (697)
T ss_pred ----------CCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC--------CCHHHHHHHHh--cCC----------
Confidence 455567788889999999999999999999999997 88999999999 883
Q ss_pred CCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHH
Q 003946 248 AMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQ 327 (784)
Q Consensus 248 ~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~ 327 (784)
.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.+++..+.+.+...+..
T Consensus 186 --~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~--- 260 (697)
T PLN03081 186 --ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF--- 260 (697)
T ss_pred --CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce---
Confidence 689999999999999999999999999999999999999999999999999999999999999999875444443
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchh
Q 003946 328 FYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYE 407 (784)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (784)
+||+||++|+++|++++|.++|++|.
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~------------------------------------------------------ 286 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMP------------------------------------------------------ 286 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCC------------------------------------------------------
Confidence 79999999999999999999999875
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Q 003946 408 DFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD 487 (784)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~ 487 (784)
.+|.++||+||.+|++.|++++|.++|++|.+.| +.||
T Consensus 287 ----------------------------------------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g--~~pd 324 (697)
T PLN03081 287 ----------------------------------------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG--VSID 324 (697)
T ss_pred ----------------------------------------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCC
Confidence 4566899999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 488 DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS 567 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 567 (784)
..||++++.+|++.|++++|.+++.+|.+.|+.||..+||+||++|+++|++++|.++|++|. .||..+||+||.+
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~ 400 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAG 400 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997 6899999999999
Q ss_pred HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003946 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
|++.|+.++|+++|++|.+.|+.| +..||++++.+|++.|.+++|.++|+.|.+..++.|+..+|++||++|++.|+++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 999999999999999999999855 5889999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 003946 648 DAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DEELLDSVLYTFVRGGFFARANE 726 (784)
Q Consensus 648 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 726 (784)
+|.+++++|. +.||..+|++|+.+|...| +++.|..+++++.+ +.| +..+|+.|+++|++.|++++|.+
T Consensus 480 eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g-~~~~a~~~~~~l~~------~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 480 EAYAMIRRAP---FKPTVNMWAALLTACRIHK-NLELGRLAAEKLYG------MGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHHHHHHHCC---CCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHhC------CCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 9999998774 7899999999999999999 99999999999875 445 46799999999999999999999
Q ss_pred HHHHHHhCCCCC
Q 003946 727 VVAMMEEGKMFI 738 (784)
Q Consensus 727 l~~~m~~~g~~p 738 (784)
++++|+++|+++
T Consensus 550 v~~~m~~~g~~k 561 (697)
T PLN03081 550 VVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHcCCcc
Confidence 999999999864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-59 Score=534.69 Aligned_cols=453 Identities=14% Similarity=0.160 Sum_probs=401.8
Q ss_pred CCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHH
Q 003946 196 QYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQL 275 (784)
Q Consensus 196 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l 275 (784)
..++..+|+++|.+|++. |++++|+++|+ .|... .+..||..+|+.++.+|++.++++.|.++
T Consensus 83 ~~~~~~~~~~~i~~l~~~--------g~~~~Al~~f~--~m~~~-------~~~~~~~~t~~~ll~a~~~~~~~~~a~~l 145 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVAC--------GRHREALELFE--ILEAG-------CPFTLPASTYDALVEACIALKSIRCVKAV 145 (697)
T ss_pred CCCCceeHHHHHHHHHcC--------CCHHHHHHHHH--HHHhc-------CCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 345778999999999987 88999999999 88530 23689999999999999999999999999
Q ss_pred HHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003946 276 LDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQR 355 (784)
Q Consensus 276 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (784)
+..|.+.|+.||..+|+.++++|++.|++++|.++|++|.+. +.. +||+||.+|++.|++++|.++|++|.+.
T Consensus 146 ~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~---~~~----t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 146 YWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER---NLA----SWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCC---Cee----eHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999763 333 6999999999999999999999999986
Q ss_pred HHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHH
Q 003946 356 AKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQK 435 (784)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (784)
|
T Consensus 219 g------------------------------------------------------------------------------- 219 (697)
T PLN03081 219 G------------------------------------------------------------------------------- 219 (697)
T ss_pred C-------------------------------------------------------------------------------
Confidence 5
Q ss_pred HHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003946 436 QVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMH 515 (784)
Q Consensus 436 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 515 (784)
+.||..+|+.++.+|+..|..+.+.+++..+.+.| +.||..+|++||++|++.|++++|.++|++|.
T Consensus 220 -----------~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 286 (697)
T PLN03081 220 -----------SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG--VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286 (697)
T ss_pred -----------CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC--CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 58899999999999999999999999999999988 78999999999999999999999999999986
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHH
Q 003946 516 LAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQ 595 (784)
Q Consensus 516 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 595 (784)
+ +|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++++|.+.|+. ++..
T Consensus 287 ~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~-~d~~ 361 (697)
T PLN03081 287 E----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP-LDIV 361 (697)
T ss_pred C----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC-CCee
Confidence 4 5889999999999999999999999999999999999999999999999999999999999999999874 4577
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGY 675 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 675 (784)
+|++|+.+|++.|++++|.++|+.|.+ ||+.+||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPR-----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999864 688899999999999999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHhcc
Q 003946 676 AAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF--LKYHKT 753 (784)
Q Consensus 676 ~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li--~~~~~~ 753 (784)
++.| ++++|.++|+.|.+ +.++.|+..+|++|+++|+++|++++|.+++++| ++.||..+|++|+ |..+++
T Consensus 437 ~~~g-~~~~a~~~f~~m~~---~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 437 RYSG-LSEQGWEIFQSMSE---NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKN 509 (697)
T ss_pred hcCC-cHHHHHHHHHHHHH---hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 9999 99999999999976 2689999999999999999999999999998877 4789999999999 455555
Q ss_pred cccC-CchhhHHH----------------HHHHHHHHHHhhHhhh
Q 003946 754 LYKG-KTPKFQTE----------------AQLKKREAALGFKKWL 781 (784)
Q Consensus 754 ~~~~-~a~~~~~~----------------~~~~~~e~~~~~~~~~ 781 (784)
.+.+ .+.+.+.+ ...++|+++.++++.|
T Consensus 510 ~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 510 LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5544 33333322 5566888888887665
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-27 Score=288.11 Aligned_cols=573 Identities=13% Similarity=0.025 Sum_probs=452.1
Q ss_pred ccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCc
Q 003946 85 VQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLE 164 (784)
Q Consensus 85 ~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 164 (784)
..+.++..+..+...+...|++++|+..++++.+... .+...+..+...+.+.|+ .++|...+.++... .+ .+
T Consensus 324 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~~--~~ 396 (899)
T TIGR02917 324 YAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGD---FEKAAEYLAKATEL-DP--EN 396 (899)
T ss_pred hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc-CC--CC
Confidence 3456778888899999999999999999999987542 345666777777777654 45677788877665 21 24
Q ss_pred cchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccc
Q 003946 165 KEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNA 244 (784)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~ 244 (784)
+..+..+...|...|++++|.+.|+.+.+.... +...+..++..+.+. |++++|..+++ ++.
T Consensus 397 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~--------~~~~~A~~~~~--~~~------- 458 (899)
T TIGR02917 397 AAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRS--------GQFDKALAAAK--KLE------- 458 (899)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhc--------CCHHHHHHHHH--HHH-------
Confidence 556677888899999999999999999876533 334555666677775 88999999998 663
Q ss_pred cccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhh
Q 003946 245 PLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQ 324 (784)
Q Consensus 245 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 324 (784)
...+++..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+....+.+..
T Consensus 459 --~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 534 (899)
T TIGR02917 459 --KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR- 534 (899)
T ss_pred --HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH-
Confidence 2335567789999999999999999999999998754 334567788889999999999999999999886555444
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccccccc
Q 003946 325 FRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHIL 404 (784)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (784)
++..+...|.+.|+.++|...|+++...+.... ..+ .
T Consensus 535 ---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------------------------~~~---~ 571 (899)
T TIGR02917 535 ---AILALAGLYLRTGNEEEAVAWLEKAAELNPQEI-------------------------------------EPA---L 571 (899)
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-------------------------------------hHH---H
Confidence 599999999999999999999999877432000 000 0
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003946 405 SYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQV 484 (784)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 484 (784)
..+.. ....+....+...+..+. ...+.+...|..+..++...|++++|...|.++.+..
T Consensus 572 ~l~~~---~~~~~~~~~A~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 631 (899)
T TIGR02917 572 ALAQY---YLGKGQLKKALAILNEAA--------------DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--- 631 (899)
T ss_pred HHHHH---HHHCCCHHHHHHHHHHHH--------------HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 00000 000011112222222221 1135577899999999999999999999999998776
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 485 SHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEAL 564 (784)
Q Consensus 485 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 564 (784)
+.+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+...+...|++++|..+++.+.+.+ ..+...+..+
T Consensus 632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 709 (899)
T TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELE 709 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHH
Confidence 5567778889999999999999999999998864 3468899999999999999999999999998875 4577888889
Q ss_pred HHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 003946 565 LQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKR 644 (784)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g 644 (784)
...+...|++++|+..|+++...+ |.+ .++..+...+.+.|++++|.+.++.+.+..+ .+...+..+...|...|
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRA--PSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHP--NDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--CCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCc
Confidence 999999999999999999998865 443 5777889999999999999999999988653 46788999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003946 645 LMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARA 724 (784)
Q Consensus 645 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 724 (784)
+.++|.++|+++.+.. +++..+++.+...+...| + .+|...++++.+.. +-++..+..+...|...|++++|
T Consensus 785 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~-~-~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~A 856 (899)
T TIGR02917 785 DYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELK-D-PRALEYAEKALKLA-----PNIPAILDTLGWLLVEKGEADRA 856 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC-c-HHHHHHHHHHHhhC-----CCCcHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999863 457888999999999999 8 88999999988732 23567788899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcccccCCchhhHHH
Q 003946 725 NEVVAMMEEGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQTE 765 (784)
Q Consensus 725 ~~l~~~m~~~g~~pd~~~~~~li~~~~~~~~~~~a~~~~~~ 765 (784)
.++++++.+.+. .|..++..+...+.+.+...+|.+.+.+
T Consensus 857 ~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 857 LPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred HHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998764 3888888888888877776666665544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-27 Score=280.69 Aligned_cols=569 Identities=13% Similarity=0.022 Sum_probs=442.0
Q ss_pred cCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCcc
Q 003946 86 QARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEK 165 (784)
Q Consensus 86 ~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 165 (784)
.+.+...+..+...+...|++++|...|++..+..+ .+...+..+...+.+.|+ ..+|...+..+... .+.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~---~~~~~ 363 (899)
T TIGR02917 291 APEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGR---VDEAIATLSPALGL---DPDDP 363 (899)
T ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc---CCCCH
Confidence 344455566667788899999999999999887542 233445566666666554 45677778777665 22356
Q ss_pred chHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccccc
Q 003946 166 EPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAP 245 (784)
Q Consensus 166 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~ 245 (784)
..+..+...|.+.|++++|.++|+++.+... .+...|..+...+... |++++|.+.|+ +...
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~--------~~~~~A~~~~~--~a~~------- 425 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQ--------GDPSEAIADLE--TAAQ------- 425 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhC--------CChHHHHHHHH--HHHh-------
Confidence 7788899999999999999999999987642 2455666666666665 78888988888 5532
Q ss_pred ccCCCC-chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhh
Q 003946 246 LIAMKP-NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQ 324 (784)
Q Consensus 246 ~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 324 (784)
..| +...+..++..+.+.|++++|..+++.+.+.. +++..++..+...|.+.|++++|.+.|+++.+..+.+..
T Consensus 426 ---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~- 500 (899)
T TIGR02917 426 ---LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFP- 500 (899)
T ss_pred ---hCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH-
Confidence 233 34456677888999999999999999998753 557789999999999999999999999999886544443
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH---HHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccc
Q 003946 325 FRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAK---EARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIEN 401 (784)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (784)
.+..+...+.+.|++++|.+.|+++.+.+. ..+..+...+..
T Consensus 501 ---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------------------- 545 (899)
T TIGR02917 501 ---AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR-------------------------------- 545 (899)
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH--------------------------------
Confidence 588899999999999999999999987532 001111000000
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003946 402 HILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKEN 481 (784)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 481 (784)
.+...++...+..+... ...+...+..+...+.+.|++++|..+++++....
T Consensus 546 --------------~~~~~~A~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 546 --------------TGNEEEAVAWLEKAAEL--------------NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred --------------cCCHHHHHHHHHHHHHh--------------CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 01112222222222111 23466788889999999999999999999998765
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003946 482 LQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561 (784)
Q Consensus 482 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 561 (784)
+.+..+|..+...+.+.|++++|...|+.+.+.. +.+...+..+...|.+.|++++|..+|+++.+.. +.+..++
T Consensus 598 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 598 ---PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 6778889999999999999999999999998764 3467889999999999999999999999998764 3467899
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 003946 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFC 641 (784)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~ 641 (784)
..+...+...|++++|.++++.+.+.. |++...+..+...+...|++++|.+.|+.+.... |+..++..+...|.
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA---PSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHH
Confidence 999999999999999999999998876 6677889999999999999999999999998854 55577888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCh
Q 003946 642 KKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFF 721 (784)
Q Consensus 642 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 721 (784)
+.|++++|.+.++++.+. .+.+...+..+...|...| ++++|...++++.+. .++++..++.+...+...|+
T Consensus 748 ~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQK-DYDKAIKHYRTVVKK-----APDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCc-
Confidence 999999999999999886 3446788888899999999 999999999999873 24578889999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcccccCCchhhHHHHH
Q 003946 722 ARANEVVAMMEEGKMFID-KYKYRTLFLKYHKTLYKGKTPKFQTEAQ 767 (784)
Q Consensus 722 ~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 767 (784)
++|.++++++.+. .|+ ..++..+-..+...++..+|.+.+.++.
T Consensus 820 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 820 PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8899999999875 344 3444444455556565556666655543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-18 Score=204.66 Aligned_cols=519 Identities=11% Similarity=0.003 Sum_probs=365.3
Q ss_pred ccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCC----------------CchhHHHHHHHHHhccChhhHHHHH
Q 003946 85 VQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFP----------------RKTLVNKILTSFVESLDSKWLEKAY 148 (784)
Q Consensus 85 ~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p----------------~~~~~~~ll~~~~~~~~~~~~~~a~ 148 (784)
..|.++..+..+...+...|++++|+..++++.+..... +......+-.......+.....++.
T Consensus 176 ~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 176 DYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred hCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 345566777777888888888888888888875532100 0000000111111111112223333
Q ss_pred HHHHHHHHhcccccCccchHH-HHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHh
Q 003946 149 GLVEQAFEEGKQILLEKEPLI-YLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEI 227 (784)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a 227 (784)
..+...... ..+|.... .+...+...|++++|...|++..+.... +...+..+-..|.+. |++++|
T Consensus 256 ~~L~~~~~~----~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~--------g~~~eA 322 (1157)
T PRK11447 256 SQLAEQQKQ----LADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQ--------GDRARA 322 (1157)
T ss_pred HHHHHHHHh----ccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--------CCHHHH
Confidence 444333222 12333322 2355677899999999999999886322 667777777777776 889999
Q ss_pred hhhhccCCcCccccccccccCCCCch---hhHHHH------------HHHhhhcCChhHHHHHHHhhhhCCCCCChhHHH
Q 003946 228 GYLFQDGRVDPRKKCNAPLIAMKPNT---NTFNIA------------LAGCLLFETTRKAEQLLDIMPRIGVKADSNLLI 292 (784)
Q Consensus 228 ~~~~~~~~m~~~~~~~~~~~~~~p~~---~~~~~l------------l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 292 (784)
+..|+ +... ..|+. ..|..+ -..+.+.|++++|+..|++..+.. +.+...+.
T Consensus 323 ~~~l~--~Al~----------~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~ 389 (1157)
T PRK11447 323 VAQFE--KALA----------LDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVL 389 (1157)
T ss_pred HHHHH--HHHH----------hCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 99988 5532 22321 122222 235668999999999999999864 33556777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 003946 293 IMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNA 372 (784)
Q Consensus 293 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 372 (784)
.+...+...|++++|.+.|+++.+..+.+.. .+..+...|. .++.++|..+++.+......
T Consensus 390 ~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~----a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~-------------- 450 (1157)
T PRK11447 390 GLGDVAMARKDYAAAERYYQQALRMDPGNTN----AVRGLANLYR-QQSPEKALAFIASLSASQRR-------------- 450 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHH--------------
Confidence 8899999999999999999999987555443 4777777774 56789999888766543210
Q ss_pred hccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHH
Q 003946 373 VGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEK 452 (784)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 452 (784)
....... .....
T Consensus 451 ------------------------------------------------~~~~~~~--------------------~l~~~ 462 (1157)
T PRK11447 451 ------------------------------------------------SIDDIER--------------------SLQND 462 (1157)
T ss_pred ------------------------------------------------HHHHHHH--------------------Hhhhh
Confidence 0000000 00112
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKA 532 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 532 (784)
.+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++.+.+.. +.+...+..+...
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~ 538 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLY 538 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 46667788899999999999999999876 4456677788899999999999999999998754 2345555555566
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHH
Q 003946 533 YIEANRPREVTALLRDARSAGIQLDAS---------CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG 603 (784)
Q Consensus 533 ~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~ 603 (784)
+...++.++|...++.+......++.. .+..+...+...|+.++|+.+++. .|++...+..+...
T Consensus 539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~ 612 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADW 612 (1157)
T ss_pred HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHH
Confidence 788999999999998875432222221 233456678899999999999872 36667788889999
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCH
Q 003946 604 CAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKY 682 (784)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~ 682 (784)
+.+.|++++|.+.|+...+..+- +...+..++..|...|+.++|++.++...+. .| +..++..+..++...| ++
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~P~--~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g-~~ 687 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTREPG--NADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALG-DT 687 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCC-CH
Confidence 99999999999999999986542 5677999999999999999999999988764 45 4556677788888999 99
Q ss_pred HHHHHHHHHHHhcccCCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 683 TEVTELWGEMKSFASSTSMNF---DEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 683 ~~a~~~~~~m~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
++|..+++++....++ -.| +...+..+...+...|++++|.+.+++...
T Consensus 688 ~eA~~~~~~al~~~~~--~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 688 AAAQRTFNRLIPQAKS--QPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHhhhCcc--CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999998873211 122 335677778999999999999999998863
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-18 Score=205.24 Aligned_cols=570 Identities=11% Similarity=0.016 Sum_probs=339.3
Q ss_pred ccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHH-----------------HHHHHHhccChhhHH
Q 003946 83 ILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNK-----------------ILTSFVESLDSKWLE 145 (784)
Q Consensus 83 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~-----------------ll~~~~~~~~~~~~~ 145 (784)
....+.||..+..+++.+.+.|+.++|.+.+++..+.. |+...+.. +...+.+. ++.+
T Consensus 55 ~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~---g~~~ 129 (1157)
T PRK11447 55 ELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATT---GRTE 129 (1157)
T ss_pred HccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhC---CCHH
Confidence 45567789999999999999999999999999999866 55543321 11123333 4566
Q ss_pred HHHHHHHHHHHhcccccCccch-HHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHH
Q 003946 146 KAYGLVEQAFEEGKQILLEKEP-LIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELI 224 (784)
Q Consensus 146 ~a~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 224 (784)
+|...+..++.. . ++++.. ..+........|+.++|.+.++++.+.... +...+..+-..+... |+.
T Consensus 130 eA~~~~~~~l~~-~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~--------g~~ 197 (1157)
T PRK11447 130 EALASYDKLFNG-A--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSS--------GRR 197 (1157)
T ss_pred HHHHHHHHHccC-C--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHcc--------CCH
Confidence 788888887664 1 112221 112222233469999999999999987322 445555666666554 788
Q ss_pred HHhhhhhccCCcCcccccc--------ccc--cCCCC-chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHH
Q 003946 225 LEIGYLFQDGRVDPRKKCN--------APL--IAMKP-NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLII 293 (784)
Q Consensus 225 ~~a~~~~~~~~m~~~~~~~--------~~~--~~~~p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 293 (784)
++|+..++ ++....... +.+ .+..| ....+...+..+-.....+.|...+..+.+..-.|+... ..
T Consensus 198 ~eAl~~l~--~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~ 274 (1157)
T PRK11447 198 DEGFAVLE--QMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RA 274 (1157)
T ss_pred HHHHHHHH--HHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HH
Confidence 88988888 653200000 000 00011 111233333333333345566666766554432343322 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q 003946 294 MAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAV 373 (784)
Q Consensus 294 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 373 (784)
....+...|++++|...|++..+..+.+.. ++..|...|.+.|++++|+..|++..+.+.
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~----a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p---------------- 334 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSE----ALGALGQAYSQQGDRARAVAQFEKALALDP---------------- 334 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------
Confidence 456678899999999999999886554444 689999999999999999999999887431
Q ss_pred ccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHH
Q 003946 374 GVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKI 453 (784)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 453 (784)
+. .....|..++....+ ........... ...........+.......+.+...
T Consensus 335 --~~-----------------~~~~~~~~ll~~~~~------~~~~~~g~~~~--~~g~~~eA~~~~~~Al~~~P~~~~a 387 (1157)
T PRK11447 335 --HS-----------------SNRDKWESLLKVNRY------WLLIQQGDAAL--KANNLAQAERLYQQARQVDNTDSYA 387 (1157)
T ss_pred --Cc-----------------cchhHHHHHHHhhhH------HHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 00 000000000000000 00000000000 0001111111122222212235667
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------CCHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR--------ASSSV 525 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--------~~~~~ 525 (784)
+..+...+...|++++|.+.|++..+.. +.+...+..+...+. .++.++|..+++.+....-. .....
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~---p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~ 463 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMD---PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDR 463 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhH
Confidence 7788888888899999999998888765 444555655655553 34566666666544322100 01123
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA 605 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 605 (784)
+..+...+...|++++|...|++..+... -+...+..+...|.+.|++++|+..++++.+.. |.+...+..+...+.
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 34455666677777777777777766531 134556666677777777777777777766543 444433333333333
Q ss_pred hcCcHHHHHHHHHHHHhcC--------------------------------------CCCCCHHHHHHHHHHHHhcCCHH
Q 003946 606 QNHEAGLMAKLLQEVKEGQ--------------------------------------RIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~--------------------------------------~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
..++.++|...++.+.... ...++...+..+...|.+.|+++
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 4444444444433221100 01123445677888888899999
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003946 648 DAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANE 726 (784)
Q Consensus 648 ~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 726 (784)
+|++.|++..+. .| +...+..+...+...| ++++|...++.+.+. -+.+...+..+..++...|++++|.+
T Consensus 621 ~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g-~~~eA~~~l~~ll~~-----~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 621 AARAAYQRVLTR--EPGNADARLGLIEVDIAQG-DLAAARAQLAKLPAT-----ANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcc-----CCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 999999988875 45 5778888888888888 999999999877652 11245567778888888999999999
Q ss_pred HHHHHHhC
Q 003946 727 VVAMMEEG 734 (784)
Q Consensus 727 l~~~m~~~ 734 (784)
+++++...
T Consensus 693 ~~~~al~~ 700 (1157)
T PRK11447 693 TFNRLIPQ 700 (1157)
T ss_pred HHHHHhhh
Confidence 99988764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-19 Score=187.92 Aligned_cols=306 Identities=14% Similarity=0.124 Sum_probs=228.3
Q ss_pred HHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcC
Q 003946 261 AGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFG 340 (784)
Q Consensus 261 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 340 (784)
..+...|++++|+..|.++.+.+ +.+..++..+...+.+.|++++|..+++.+.............++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34567799999999999999864 23446788888999999999999999998877532222111125888899999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHH
Q 003946 341 DLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEA 420 (784)
Q Consensus 341 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (784)
++++|..+|+++.+.+
T Consensus 122 ~~~~A~~~~~~~l~~~---------------------------------------------------------------- 137 (389)
T PRK11788 122 LLDRAEELFLQLVDEG---------------------------------------------------------------- 137 (389)
T ss_pred CHHHHHHHHHHHHcCC----------------------------------------------------------------
Confidence 9999999999887621
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC---HHHHHHHHHH
Q 003946 421 EVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD---DAALGHVITL 497 (784)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~---~~~~~~li~~ 497 (784)
.++..+++.++..+.+.|++++|.+.+..+.+.+. ..+. ...+..+...
T Consensus 138 ---------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 138 ---------------------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-DSLRVEIAHFYCELAQQ 189 (389)
T ss_pred ---------------------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHH
Confidence 33557888899999999999999999999887652 1111 1234566677
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 003946 498 CISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGA 577 (784)
Q Consensus 498 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 577 (784)
+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.+..+|...|++++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 788899999999999988764 3346677788888899999999999999987653222245678888888888889988
Q ss_pred HHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 003946 578 LHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCK---KRLMQDAEKALK 654 (784)
Q Consensus 578 ~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~---~g~~~~A~~~~~ 654 (784)
...++++.+.. |+. ..+..+...+.+.|++++|..+++.+.+. .|+...++.++..+.. .|+.+++..+++
T Consensus 269 ~~~l~~~~~~~--p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 269 LEFLRRALEEY--PGA-DLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHhC--CCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 88888887754 433 34467777777778888888888777664 3677777777776664 457777888888
Q ss_pred HHHhCCCCCCHH
Q 003946 655 RMRSLGHLPNAQ 666 (784)
Q Consensus 655 ~m~~~g~~p~~~ 666 (784)
+|.+.+++|++.
T Consensus 343 ~~~~~~~~~~p~ 354 (389)
T PRK11788 343 DLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCCCC
Confidence 777776666655
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-18 Score=184.17 Aligned_cols=277 Identities=13% Similarity=0.059 Sum_probs=233.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD---DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVY 526 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 526 (784)
+..+|..+...+...|++++|..+++.+...+. .++ ..++..+...|.+.|++++|..+|+++.+.. +++..++
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 144 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD--LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGAL 144 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHH
Confidence 456888999999999999999999999987541 222 2467888999999999999999999998763 3578899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHH
Q 003946 527 ASLLKAYIEANRPREVTALLRDARSAGIQLDA----SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVK 602 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~ 602 (784)
+.++..|.+.|++++|.+.++.+.+.+..++. ..|..+...+.+.|++++|...|+++.+.. |.....+..+..
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~ 222 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGD 222 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHH
Confidence 99999999999999999999999876533322 245667778889999999999999998764 666778888999
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCH
Q 003946 603 GCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKY 682 (784)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~ 682 (784)
.+.+.|++++|.++|+.+.+..+ .....+++.++.+|.+.|++++|...++++.+. .|+...+..+...+.+.| ++
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g-~~ 298 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQDP-EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQE-GP 298 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhC-CH
Confidence 99999999999999999987542 112456889999999999999999999999885 577777788899999999 99
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHH
Q 003946 683 TEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVR---GGFFARANEVVAMMEEGKMFIDKY 741 (784)
Q Consensus 683 ~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~ 741 (784)
++|..+++++.+ ..|+...+..++..+.. .|+.+++..++++|.+++++|++.
T Consensus 299 ~~A~~~l~~~l~------~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 299 EAAQALLREQLR------RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHH------hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 999999999876 36888899988888775 568999999999999988888776
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.7e-16 Score=176.55 Aligned_cols=200 Identities=12% Similarity=0.005 Sum_probs=131.8
Q ss_pred cccccccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHh
Q 003946 78 SMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEE 157 (784)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 157 (784)
.+...+...|.++.++..+.+.|...|++++|+..+++..+.. |+...|..++..+ +...+|...++++...
T Consensus 66 ~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i------~~~~kA~~~ye~l~~~ 137 (987)
T PRK09782 66 EFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI------PVEVKSVTTVEELLAQ 137 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh------ccChhHHHHHHHHHHh
Confidence 3344456677788999999999999999999999999998865 6666666666444 3445677888888776
Q ss_pred cccccCccchHHHHHHH--------HhhCCCCccHHHHHHHHhhcCCCCChHHHHHH-HHHHhhcCCCchhhHHHHHHhh
Q 003946 158 GKQILLEKEPLIYLSLG--------LSKCGLPVPASTILRKLVATEQYPPVTAWSAI-LAHMSLTAPGAYLAAELILEIG 228 (784)
Q Consensus 158 ~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~~~~~~~~~a~ 228 (784)
.+. +++++..+... |.+. +.|.+.++ .......|+..+.... ...|.+. +++++|+
T Consensus 138 -~P~--n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l--------~dw~~Ai 202 (987)
T PRK09782 138 -QKA--CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYL--------KQWSQAD 202 (987)
T ss_pred -CCC--ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHH--------hCHHHHH
Confidence 332 45555555554 5555 55555555 3333344455554544 6666665 7888888
Q ss_pred hhhccCCcCccccccccccCCCCchhh-HHHHHHHhhh-cCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHH
Q 003946 229 YLFQDGRVDPRKKCNAPLIAMKPNTNT-FNIALAGCLL-FETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREE 306 (784)
Q Consensus 229 ~~~~~~~m~~~~~~~~~~~~~~p~~~~-~~~ll~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 306 (784)
+++. ++.+ ..|.... +..+-.+|.+ .++ +++..+++. .++-|......+.+.|.+.|+.++
T Consensus 203 ~lL~--~L~k----------~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 203 TLYN--EARQ----------QNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKAR 265 (987)
T ss_pred HHHH--HHHh----------cCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHH
Confidence 8888 7643 2333333 4445456666 355 777777553 233567778888888888888888
Q ss_pred HHHHHHHHHhh
Q 003946 307 LRKLQRHIDEA 317 (784)
Q Consensus 307 A~~l~~~~~~~ 317 (784)
|.++++++...
T Consensus 266 A~~~L~~~~~~ 276 (987)
T PRK09782 266 LQHYLIENKPL 276 (987)
T ss_pred HHHHHHhCccc
Confidence 88888776543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-14 Score=167.17 Aligned_cols=594 Identities=13% Similarity=0.057 Sum_probs=340.0
Q ss_pred HHHHHHHHH--hccchhhHHHHHHHhcccCCCCCc-hhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHH
Q 003946 93 LSAEIENAI--NEHRYGDAWKLYEQHMQMDGFPRK-TLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLI 169 (784)
Q Consensus 93 ~~~li~~~~--~~~~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 169 (784)
+..++.++. ..|++++|+..|++..+.. |+. ..+..+...+.+.|+ .++|...+++..+. .|+...|.
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~---~~~A~~~~~kAv~l----dP~n~~~~ 115 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGH---DDRARLLLEDQLKR----HPGDARLE 115 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc----CcccHHHH
Confidence 333444443 4599999999999999866 544 555677777777654 45677788887776 22212222
Q ss_pred HHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHH--------HhhcCCCchhhHHHHHHhhhhhccCCcCcccc
Q 003946 170 YLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAH--------MSLTAPGAYLAAELILEIGYLFQDGRVDPRKK 241 (784)
Q Consensus 170 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--------~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~ 241 (784)
.++ ...++.++|..+++++.+.... +..++..+... |.+. +...++++ . +.
T Consensus 116 ~~L---a~i~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~--------eqAl~AL~-l---r~----- 174 (987)
T PRK09782 116 RSL---AAIPVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL--------PVARAQLN-D---AT----- 174 (987)
T ss_pred HHH---HHhccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH--------HHHHHHHH-H---hh-----
Confidence 222 3339999999999999986432 23333333332 4443 66666666 3 33
Q ss_pred ccccccCCCCchhhHHHH-HHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHHHhhcC
Q 003946 242 CNAPLIAMKPNTNTFNIA-LAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYER-NGRREELRKLQRHIDEAVN 319 (784)
Q Consensus 242 ~~~~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~~ 319 (784)
....|+..+.... ...|.+.+++++|+.++..+.+.+ ..+..-...|..+|.. .++ +.+..++....+
T Consensus 175 -----~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk--- 244 (987)
T PRK09782 175 -----FAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF--- 244 (987)
T ss_pred -----hCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---
Confidence 2234455545544 899999999999999999999986 3345556777778888 477 888888653222
Q ss_pred CChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH-----HHHHHHHhchhhhhhccCCCCCCCccccCCCCcccc
Q 003946 320 LSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKE-----ARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLE 394 (784)
Q Consensus 320 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (784)
.... ++..+.+.|.+.|+.++|.++++++.....- +|--.+.=+.......... ++..+ ..+..
T Consensus 245 -~d~~---l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~--~~~~~-----~~~~~ 313 (987)
T PRK09782 245 -TDPQ---SRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALAN--YTVQF-----ADNRQ 313 (987)
T ss_pred -cCHH---HHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccc--hhhhh-----HHHHH
Confidence 2222 6999999999999999999999998764221 1100000000000000000 00000 00000
Q ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHHHHHh--hhHHHH-HHHHh---------hhc--CCcCC-CHHHHHHHHH
Q 003946 395 NSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLL--GMLQKQ-VELIT---------TEH--GILQP-TEKIYIKLVK 459 (784)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~---------~~~--~~~~p-~~~~~~~li~ 459 (784)
++... +..-..++... .-+..+..... .+.... ..... ... --..| +....--+-.
T Consensus 314 ~~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~ 384 (987)
T PRK09782 314 YVVGA-----TLPVLLKEGQY----DAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTW 384 (987)
T ss_pred HHHHH-----HHHHHHhccHH----HHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 00000 00000000000 00000000000 000000 00000 000 00012 3333333444
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC---HHHHHHH----------------------HHHH
Q 003946 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW---LDQAHDL----------------------LDEM 514 (784)
Q Consensus 460 ~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~----------------------~~~m 514 (784)
...+.|+.++|.++|+..........++.....-++..|.+.+. ..++..+ ++..
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 56788999999999999876211124455556577777777655 2233222 1111
Q ss_pred HHc-CC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCC
Q 003946 515 HLA-GV-RA--SSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIP 590 (784)
Q Consensus 515 ~~~-g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 590 (784)
... +. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|+..|+++....
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~-- 539 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD-- 539 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--
Confidence 111 11 23 56677777777766 7777888877776654 4665544444555567888888888888765432
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003946 591 RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHS 670 (784)
Q Consensus 591 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 670 (784)
|. ...+..+...+.+.|+.++|...++......+ ++...+..+...+.+.|++++|...+++..+. .|+...|..
T Consensus 540 p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P--~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~ 614 (987)
T PRK09782 540 MS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGL--GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVA 614 (987)
T ss_pred CC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 22 33455666777888888888888888776532 12222333333444558888888888888763 577777777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHH
Q 003946 671 MVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYK-YRTLFLK 749 (784)
Q Consensus 671 ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~-~~~li~~ 749 (784)
+..++.+.| ++++|...+++..+.. +.+...++.+..++...|++++|.+.+++..+. .|+... +..+-..
T Consensus 615 LA~~l~~lG-~~deA~~~l~~AL~l~-----Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~a 686 (987)
T PRK09782 615 RATIYRQRH-NVPAAVSDLRAALELE-----PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYV 686 (987)
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 778888888 8888888888877621 224567777788888888888888888888764 455433 3333344
Q ss_pred HhcccccCCchhhHH
Q 003946 750 YHKTLYKGKTPKFQT 764 (784)
Q Consensus 750 ~~~~~~~~~a~~~~~ 764 (784)
+...++.+.|...+.
T Consensus 687 l~~lGd~~eA~~~l~ 701 (987)
T PRK09782 687 NQRLDDMAATQHYAR 701 (987)
T ss_pred HHHCCCHHHHHHHHH
Confidence 444444444444443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-17 Score=166.09 Aligned_cols=445 Identities=13% Similarity=0.024 Sum_probs=337.1
Q ss_pred HHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHH
Q 003946 94 SAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSL 173 (784)
Q Consensus 94 ~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 173 (784)
..+..-..+.|++++|++.-...-+.+ |...--..++.+.--.+ .+.+....-.....+ ....-.+.|..+.+
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~--~r~d~s~a~~~~a~r---~~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQG--SRLDKSSAGSLLAIR---KNPQGAEAYSNLAN 124 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcc--cchhhhhhhhhhhhh---ccchHHHHHHHHHH
Confidence 344555667899999999888665544 22222222333322211 111122111111111 12334667888999
Q ss_pred HHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCch
Q 003946 174 GLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNT 253 (784)
Q Consensus 174 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~ 253 (784)
.+-..|++++|+.+++.+++...+ .+..|..+-.++... |+.+.|...|. +- -.+.|+.
T Consensus 125 ~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~--------~~~~~a~~~~~--~a----------lqlnP~l 183 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQ--------GDLELAVQCFF--EA----------LQLNPDL 183 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhc--------CCCcccHHHHH--HH----------HhcCcch
Confidence 999999999999999999986322 456777777777765 66677777766 33 2357777
Q ss_pred hhHHHHHHHhhh-cCChhHHHHHHHhhhhCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 003946 254 NTFNIALAGCLL-FETTRKAEQLLDIMPRIGVKADS-NLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNC 331 (784)
Q Consensus 254 ~~~~~ll~~~~~-~g~~~~A~~l~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 331 (784)
+...+-+..+.+ .|+.++|...|-+.++. .|.- ..|+.|...+-..|++..|..-|++..+.++...+ .|-.
T Consensus 184 ~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~d----AYiN 257 (966)
T KOG4626|consen 184 YCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLD----AYIN 257 (966)
T ss_pred hhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchH----HHhh
Confidence 766665555554 68999999998887764 4554 67888888899999999999999998887655555 4899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhh
Q 003946 332 LLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTK 411 (784)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (784)
|-..|...+.+++|...+.+...
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~--------------------------------------------------------- 280 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALN--------------------------------------------------------- 280 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHh---------------------------------------------------------
Confidence 99999999999999998887665
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHH
Q 003946 412 DRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAA 490 (784)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~ 490 (784)
..| ..+.+..|...|-..|.++.|+..+++..... +--...
T Consensus 281 -----------------------------------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~---P~F~~A 322 (966)
T KOG4626|consen 281 -----------------------------------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ---PNFPDA 322 (966)
T ss_pred -----------------------------------cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC---CCchHH
Confidence 344 34677778888889999999999999998775 333456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003946 491 LGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLD-ASCYEALLQSKI 569 (784)
Q Consensus 491 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~ 569 (784)
|+.|..++-..|++.+|...|++...... --....+.|...|...|.+++|..+|....+- .|. ....+.|...|-
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYK 399 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHH
Confidence 99999999999999999999999988642 24678889999999999999999999998764 454 356899999999
Q ss_pred HcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 003946 570 VQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRLMQD 648 (784)
Q Consensus 570 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~ 648 (784)
+.|++++|+..+++..+ +.|.-..+|+.+...|-..|+++.|.+.+.....-+ |. ...++.|...|-..|++.+
T Consensus 400 qqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n---Pt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN---PTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred hcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC---cHHHHHHhhHHHHhhccCCcHH
Confidence 99999999999999876 558888899999999999999999999999988744 44 4578999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHH
Q 003946 649 AEKALKRMRSLGHLPN-AQTFHSMVTGYAA 677 (784)
Q Consensus 649 A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~ 677 (784)
|+.-+++.++ ++|| ...|..++.+..-
T Consensus 475 AI~sY~~aLk--lkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 475 AIQSYRTALK--LKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHHHHHHc--cCCCCchhhhHHHHHHHH
Confidence 9999999987 6787 4566666655443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-16 Score=162.36 Aligned_cols=441 Identities=15% Similarity=0.075 Sum_probs=320.2
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccccccc
Q 003946 168 LIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLI 247 (784)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~ 247 (784)
.-.+-..|....+.+....--....+. ...-..+|..+-..+-.+ |++++|+.+++ .+.
T Consensus 85 llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker--------g~~~~al~~y~--~ai---------- 143 (966)
T KOG4626|consen 85 LLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER--------GQLQDALALYR--AAI---------- 143 (966)
T ss_pred eeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh--------chHHHHHHHHH--HHH----------
Confidence 333444566666666655433333322 122455777777777665 88888988888 663
Q ss_pred CCCCc-hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhH
Q 003946 248 AMKPN-TNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLL-IIMAHIYERNGRREELRKLQRHIDEAVNLSDIQF 325 (784)
Q Consensus 248 ~~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~-~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~ 325 (784)
...|+ +-.|..+-.++...|+.+.|.+.|.+.++ +.|+..-. +.+....-..|++++|...+-+..+..+-...
T Consensus 144 el~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAi-- 219 (966)
T KOG4626|consen 144 ELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAI-- 219 (966)
T ss_pred hcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceee--
Confidence 24554 55788888888888999999998888876 35766443 34445555678888988888887775433222
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccc
Q 003946 326 RQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILS 405 (784)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (784)
.|+.|-..+-..|+...|+.-|++...
T Consensus 220 --awsnLg~~f~~~Gei~~aiq~y~eAvk--------------------------------------------------- 246 (966)
T KOG4626|consen 220 --AWSNLGCVFNAQGEIWLAIQHYEEAVK--------------------------------------------------- 246 (966)
T ss_pred --eehhcchHHhhcchHHHHHHHHHHhhc---------------------------------------------------
Confidence 588888888889999999888887665
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003946 406 YEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPT-EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQV 484 (784)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 484 (784)
+.|+ ...|-.|-..|-..+.+++|...+.+.....
T Consensus 247 -----------------------------------------ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--- 282 (966)
T KOG4626|consen 247 -----------------------------------------LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR--- 282 (966)
T ss_pred -----------------------------------------CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC---
Confidence 3443 2567778888899999999999998887664
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 485 SHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS-SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563 (784)
Q Consensus 485 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 563 (784)
+...+.+..+...|-..|.++.|+..|++..+. .|+ ...|+.|..++-..|++.+|.+.+++..... .--..+.+.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 455667777888888899999999999988875 355 5789999999999999999999999887653 224567888
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHh
Q 003946 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCK 642 (784)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~ 642 (784)
|-..|...|.+++|..+|....+-. |.-...++.|...|-+.|++++|...+++... +.|+ ...|+.|...|-.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHH
Confidence 9999999999999999998877643 66677889999999999999999999998887 5565 4578999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhcC-
Q 003946 643 KRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD-EELLDSVLYTFVRGG- 719 (784)
Q Consensus 643 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~li~~~~~~g- 719 (784)
.|+++.|.+.+.+.+. +.|. ...++.|...|...| ++.+|+.-++...+ ++|| +..|..++..+---.
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsG-ni~~AI~sY~~aLk------lkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSG-NIPEAIQSYRTALK------LKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccC-CcHHHHHHHHHHHc------cCCCCchhhhHHHHHHHHHhc
Confidence 9999999999988887 4565 567788888888888 99999999988876 4554 334444444333222
Q ss_pred ------ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 720 ------FFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 720 ------~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
++++..++.++-.++..-|...-..+++
T Consensus 506 w~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ 539 (966)
T KOG4626|consen 506 WTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSML 539 (966)
T ss_pred ccchHHHHHHHHHHHHHHHhhhcCCccCcccccc
Confidence 2344555555444444445544444444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-15 Score=171.97 Aligned_cols=382 Identities=9% Similarity=-0.022 Sum_probs=291.2
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 003946 255 TFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLS 334 (784)
Q Consensus 255 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~ 334 (784)
-.-.++..+.+.|+++.|..+++......-. +...+..++.++...|+++.|...++.+.+..+.+.. .|..+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~----a~~~la~ 118 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE----DVLLVAS 118 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH----HHHHHHH
Confidence 3445677888999999999999999876422 3345555666777899999999999999987655544 5899999
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhh
Q 003946 335 CHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRK 414 (784)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (784)
.+.+.|++++|...|++..+.
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l----------------------------------------------------------- 139 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLA----------------------------------------------------------- 139 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-----------------------------------------------------------
Confidence 999999999999999988872
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 003946 415 FVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGH 493 (784)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~ 493 (784)
.| +...+..+...+...|++++|...++.+.... +.+...+..
T Consensus 140 ---------------------------------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~---P~~~~a~~~ 183 (656)
T PRK15174 140 ---------------------------------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV---PPRGDMIAT 183 (656)
T ss_pred ---------------------------------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---CCCHHHHHH
Confidence 34 56788889999999999999999999887665 333333433
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 494 VITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKD 573 (784)
Q Consensus 494 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 573 (784)
+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|...+++..+.. ..+...+..+...+...|+
T Consensus 184 ~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 184 C-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGR 261 (656)
T ss_pred H-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 3 3478899999999999998877544455566667788999999999999999998764 3367788889999999999
Q ss_pred hhH----HHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003946 574 TPG----ALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDA 649 (784)
Q Consensus 574 ~~~----A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A 649 (784)
.++ |+..|++..+.. |++...+..+...+.+.|++++|...++......+. +...+..+..+|.+.|++++|
T Consensus 262 ~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~--~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 262 SREAKLQAAEHWRHALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD--LPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred chhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHH
Confidence 986 899999988764 888899999999999999999999999999986532 345677889999999999999
Q ss_pred HHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003946 650 EKALKRMRSLGHLPNAQT-FHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVV 728 (784)
Q Consensus 650 ~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 728 (784)
.+.++++... .|+... +..+..++...| +.++|...+++..+..++....+-......+-.++...+..++...+.
T Consensus 338 ~~~l~~al~~--~P~~~~~~~~~a~al~~~G-~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~ 414 (656)
T PRK15174 338 SDEFVQLARE--KGVTSKWNRYAAAALLQAG-KTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWA 414 (656)
T ss_pred HHHHHHHHHh--CccchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHH
Confidence 9999999875 566444 334566788889 999999999998774322211111223334444444555555544555
Q ss_pred HHHHhCCCCCCHHHHHH
Q 003946 729 AMMEEGKMFIDKYKYRT 745 (784)
Q Consensus 729 ~~m~~~g~~pd~~~~~~ 745 (784)
.+..-..-..|..+|+.
T Consensus 415 ~~~~~~~~~~~~~~~~~ 431 (656)
T PRK15174 415 WEVAGRQSGIERDEWER 431 (656)
T ss_pred HHHhcccccCChHHHHH
Confidence 55553322344455543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-14 Score=162.11 Aligned_cols=414 Identities=11% Similarity=-0.022 Sum_probs=292.4
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 003946 255 TFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLS 334 (784)
Q Consensus 255 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~ 334 (784)
.+...-..+.+.|++++|+..|++.++ +.|+...|..+..+|.+.|++++|.+.+....+.++.... .|..+-.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~----a~~~~a~ 202 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK----ALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHH----HHHHHHH
Confidence 355666778889999999999999887 4688889999999999999999999999999886554444 5889999
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhh
Q 003946 335 CHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRK 414 (784)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (784)
+|...|++++|+..|......+.........+... ...
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~l~--- 240 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQSAQAVER---------------------------------------LLK--- 240 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHH---------------------------------------HHH---
Confidence 99999999999998876544221000000000000 000
Q ss_pred hHHHHHHHHH-------------HHHHHhhhHHHHH--HHHhhhcCCcCCCH-HHHHHHHHH---HHHcCChHHHHHHHH
Q 003946 415 FVALEAEVKR-------------VLQTLLGMLQKQV--ELITTEHGILQPTE-KIYIKLVKA---FLEAGKTKELTHFLI 475 (784)
Q Consensus 415 ~~~~~~~~~~-------------~~~~~~~~~~~~~--~~~~~~~~~~~p~~-~~~~~li~~---~~~~g~~~~a~~~~~ 475 (784)
......... .+........... ..... .....|+. ..+..+... ....+++++|.+.|+
T Consensus 241 -~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~ 318 (615)
T TIGR00990 241 -KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED-SNELDEETGNGQLQLGLKSPESKADESYEEAARAFE 318 (615)
T ss_pred -HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc-ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 000000000 0000000000000 00000 00001100 011111111 123468899999999
Q ss_pred HHHHcCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 003946 476 KAEKENLQVSH-DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGI 554 (784)
Q Consensus 476 ~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 554 (784)
+....+. ..| +...+..+...+...|++++|...|+...+.. +-+...|..+...+...|++++|...|++..+..
T Consensus 319 ~al~~~~-~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 395 (615)
T TIGR00990 319 KALDLGK-LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN- 395 (615)
T ss_pred HHHhcCC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 9887642 233 44567778888889999999999999998864 2246688889999999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHH
Q 003946 555 QLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWN 634 (784)
Q Consensus 555 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~ 634 (784)
..+...|..+...+...|++++|+..|++..+.. |++...+..+...+.+.|++++|...|+......+. +...|+
T Consensus 396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~--~~~~~~ 471 (615)
T TIGR00990 396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE--APDVYN 471 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHH
Confidence 3367889999999999999999999999998865 777888889999999999999999999999876532 456789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CH
Q 003946 635 NVIHFFCKKRLMQDAEKALKRMRSLGHLPNA-Q-------TFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DE 705 (784)
Q Consensus 635 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~-------~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~ 705 (784)
.+...|...|++++|++.|++..+. .|+. . .++..+..+...| ++++|..++++.... .| +.
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~-~~~eA~~~~~kAl~l------~p~~~ 542 (615)
T TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQ-DFIEAENLCEKALII------DPECD 542 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhc------CCCcH
Confidence 9999999999999999999998875 3321 1 1122222333458 999999999998762 23 44
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 706 ELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 706 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
..+..+...+...|++++|.+.|++..+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 57889999999999999999999998764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-14 Score=163.79 Aligned_cols=332 Identities=10% Similarity=-0.012 Sum_probs=270.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchh
Q 003946 290 LLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLP 369 (784)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 369 (784)
-...++..+.+.|+.++|..+++......+.... .+..+..+....|++++|...|+++...+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~----~l~~l~~~~l~~g~~~~A~~~l~~~l~~~------------- 106 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD----LLRRWVISPLASSQPDAVLQVVNKLLAVN------------- 106 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh----HHHHHhhhHhhcCCHHHHHHHHHHHHHhC-------------
Confidence 3445667788999999999999999887555444 36666677788999999999999998732
Q ss_pred hhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC
Q 003946 370 FNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP 449 (784)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 449 (784)
+.
T Consensus 107 ------------------------------------------------------------------------------P~ 108 (656)
T PRK15174 107 ------------------------------------------------------------------------------VC 108 (656)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 22
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|...++.+...... +...+..+
T Consensus 109 ~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~---P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~ 184 (656)
T PRK15174 109 QPEDVLLVASVLLKSKQYATVADLAEQAWLAF---SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC 184 (656)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 45678888899999999999999999998865 556677888999999999999999999988776433 33344333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
..+...|++++|...++.+.+....++...+..+..++...|+.++|+..+++..+.. |.+...+..+...+...|+
T Consensus 185 -~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 185 -LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGR 261 (656)
T ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCC
Confidence 3478899999999999998776433455566666788899999999999999998865 7778899999999999999
Q ss_pred HHH----HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHH
Q 003946 610 AGL----MAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYTE 684 (784)
Q Consensus 610 ~~~----a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~~ 684 (784)
+++ |...|+...+..+ .+...+..+...+.+.|++++|+..+++..+. .|+ ...+..+..++...| ++++
T Consensus 262 ~~eA~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G-~~~e 336 (656)
T PRK15174 262 SREAKLQAAEHWRHALQFNS--DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVG-QYTA 336 (656)
T ss_pred chhhHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC-CHHH
Confidence 986 8999999988653 25678999999999999999999999999985 564 566777888999999 9999
Q ss_pred HHHHHHHHHhcccCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 685 VTELWGEMKSFASSTSMNFDE-ELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 685 a~~~~~~m~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
|...++.+.+. .|+. ..+..+..++...|++++|.+.+++..+.
T Consensus 337 A~~~l~~al~~------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 337 ASDEFVQLARE------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHh------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999998862 3443 33444677899999999999999998865
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-14 Score=161.44 Aligned_cols=431 Identities=13% Similarity=0.013 Sum_probs=287.2
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHH
Q 003946 92 KLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYL 171 (784)
Q Consensus 92 ~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 171 (784)
.+......|...|++++|+..|++.++.. |+...|..+-.++.+.| +.++|+..+...++. .+ ..+..+..+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~---~~~~Ai~~~~~al~l-~p--~~~~a~~~~ 200 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALG---DWEKVVEDTTAALEL-DP--DYSKALNRR 200 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhC---CHHHHHHHHHHHHHc-CC--CCHHHHHHH
Confidence 35566778889999999999999988754 77777777777777654 556688888887765 21 245567778
Q ss_pred HHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCC
Q 003946 172 SLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKP 251 (784)
Q Consensus 172 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p 251 (784)
..+|...|++++|...|......+...+... ..++..+... ....++...++ .- ++
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~--------~a~~~~~~~l~--~~-------------~~ 256 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKK--------FAESKAKEILE--TK-------------PE 256 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHH--------HHHHHHHHHHh--cC-------------CC
Confidence 8899999999999998877655422212211 1111111110 11222333333 11 22
Q ss_pred chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCCh-hHHHHHHHH---HHhcCCHHHHHHHHHHHHhhc--CCChhhH
Q 003946 252 NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADS-NLLIIMAHI---YERNGRREELRKLQRHIDEAV--NLSDIQF 325 (784)
Q Consensus 252 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~li~~---~~~~g~~~~A~~l~~~~~~~~--~~~~~~~ 325 (784)
+..++..+ ..+........+..-+..-.+ ..++. ..+..+... ....+++++|.+.|+.....+ .+....
T Consensus 257 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~- 332 (615)
T TIGR00990 257 NLPSVTFV-GNYLQSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAI- 332 (615)
T ss_pred CCCCHHHH-HHHHHHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHH-
Confidence 22222222 222222222222222222111 11211 111111111 123467889999998887653 232222
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccc
Q 003946 326 RQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILS 405 (784)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (784)
.|+.+...+...|++++|+..|++..+
T Consensus 333 --a~~~lg~~~~~~g~~~eA~~~~~kal~--------------------------------------------------- 359 (615)
T TIGR00990 333 --ALNLRGTFKCLKGKHLEALADLSKSIE--------------------------------------------------- 359 (615)
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------------------------------
Confidence 588888888899999999999988776
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003946 406 YEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQV 484 (784)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 484 (784)
..| +...|..+...+...|++++|...|++..+..
T Consensus 360 -----------------------------------------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--- 395 (615)
T TIGR00990 360 -----------------------------------------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--- 395 (615)
T ss_pred -----------------------------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 234 34577788888889999999999999988765
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 485 SHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEAL 564 (784)
Q Consensus 485 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 564 (784)
+.+..+|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++..+.. ..+...|+.+
T Consensus 396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~l 473 (615)
T TIGR00990 396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYY 473 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 5567778888888999999999999999988764 3357778888888999999999999999887653 2356788888
Q ss_pred HHHHHHcCChhHHHHHHHHhHhcCCCCCc-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 003946 565 LQSKIVQKDTPGALHLFKEMKESKIPRSG-----HQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHF 639 (784)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~ 639 (784)
...+...|++++|+..|++.....-.... ...++..+..+...|++++|.++++.....++ .+...+..+...
T Consensus 474 g~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p--~~~~a~~~la~~ 551 (615)
T TIGR00990 474 GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP--ECDIAVATMAQL 551 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHH
Confidence 88999999999999999988765421110 11223333344456899999999998877542 234578899999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 003946 640 FCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 640 ~~~~g~~~~A~~~~~~m~~~ 659 (784)
|...|++++|++.|++..+.
T Consensus 552 ~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 552 LLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 99999999999999998875
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-13 Score=148.12 Aligned_cols=321 Identities=13% Similarity=0.110 Sum_probs=230.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENL-QVSHDDA-------ALGHVITLCISLGWLDQAHDLLDEMHLAGV 519 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~p~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 519 (784)
.+.+...|.+...+...|++.+|...|......-. ...+|.. -|| +-...-..++.+.|.+.|..+.+..
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkeh- 526 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEH- 526 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHC-
Confidence 46778899999999999999999999999875510 0133331 233 4444556789999999999999863
Q ss_pred CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHH
Q 003946 520 RAS-SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFE 598 (784)
Q Consensus 520 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 598 (784)
|+ +..|--+..+.-..+...+|...++...... ..+...++.+-..+.....+..|.+-|....+.-...++..+..
T Consensus 527 -p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli 604 (1018)
T KOG2002|consen 527 -PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI 604 (1018)
T ss_pred -chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence 43 3344444444444578889999999987653 34556666666678888888889887777766554455666666
Q ss_pred HHHHHHHhc------------CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003946 599 MLVKGCAQN------------HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ 666 (784)
Q Consensus 599 ~ll~~~~~~------------~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 666 (784)
.|.+.|... +..+.|.++|..+...++ .|...-|-+.-.++..|++.+|..+|.+..+... -+..
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp--kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~d 681 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP--KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFED 681 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc--chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCc
Confidence 666655432 247888999998887654 3777778899999999999999999999998742 3456
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003946 667 TFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTL 746 (784)
Q Consensus 667 ~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 746 (784)
+|-.+...|...| +|-.|++.|+...+. ..-.-+..+...|..++.++|++.+|.+.+.........-..+-||..
T Consensus 682 v~lNlah~~~e~~-qy~~AIqmYe~~lkk---f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQG-QYRLAIQMYENCLKK---FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred eeeeHHHHHHHHH-HHHHHHHHHHHHHHH---hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 7888899999999 999999999987662 344557889999999999999999999999888876444445566655
Q ss_pred H--HHHhcccccC--CchhhHHHHHHHHHHHHHhhHh
Q 003946 747 F--LKYHKTLYKG--KTPKFQTEAQLKKREAALGFKK 779 (784)
Q Consensus 747 i--~~~~~~~~~~--~a~~~~~~~~~~~~e~~~~~~~ 779 (784)
+ ........+. .-.+.+.++.....+....|..
T Consensus 758 ~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ 794 (1018)
T KOG2002|consen 758 LVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTE 794 (1018)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5 2222222222 4455555555555555555543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-13 Score=156.39 Aligned_cols=410 Identities=10% Similarity=0.003 Sum_probs=257.3
Q ss_pred HHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHH
Q 003946 257 NIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCH 336 (784)
Q Consensus 257 ~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~ 336 (784)
.-.+......|+.++|++++....... +.+...+..+..++.+.|++++|.++++...+..+.+.. .+..+...+
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~la~~l 93 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD----YQRGLILTL 93 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHH
Confidence 344555667899999999998887622 344456888888899999999999999998876555544 477888888
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhH
Q 003946 337 LKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFV 416 (784)
Q Consensus 337 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (784)
.+.|++++|+..+++..+... .... ....+... ...
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P---------------------------------------~~~~--~~~la~~l---~~~ 129 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAP---------------------------------------DKAN--LLALAYVY---KRA 129 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCC---------------------------------------CCHH--HHHHHHHH---HHC
Confidence 999999999999988877431 0000 00000000 000
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCH------H
Q 003946 417 ALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDD------A 489 (784)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~------~ 489 (784)
+...++...+..+.. ..| +...+..+..++...+..++|++.++.... .|+. .
T Consensus 130 g~~~~Al~~l~~al~---------------~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-----~p~~~~~l~~~ 189 (765)
T PRK10049 130 GRHWDELRAMTQALP---------------RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-----TPAEKRDLEAD 189 (765)
T ss_pred CCHHHHHHHHHHHHH---------------hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-----CHHHHHHHHHH
Confidence 001112222221111 234 445556666677777777777777765442 1221 0
Q ss_pred HHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003946 490 ALGHVITLCI-----SLGWL---DQAHDLLDEMHLA-GVRASSS-VY----ASLLKAYIEANRPREVTALLRDARSAGIQ 555 (784)
Q Consensus 490 ~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 555 (784)
....++.... ..+++ ++|...++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+..
T Consensus 190 ~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~ 269 (765)
T PRK10049 190 AAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI 269 (765)
T ss_pred HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Confidence 1111222221 11223 6677777777754 1222221 11 11133455678888888888888776522
Q ss_pred -CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCC--CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC------
Q 003946 556 -LDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPR--SGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRI------ 626 (784)
Q Consensus 556 -p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------ 626 (784)
|+. .-..+..+|...|++++|+..|+++....-.. ........+..++...|++++|.++++.+....+.
T Consensus 270 ~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~ 348 (765)
T PRK10049 270 IPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYG 348 (765)
T ss_pred CCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecC
Confidence 332 12224667888888888888888877543111 11345566666788888888888888888775421
Q ss_pred ----CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC
Q 003946 627 ----DCG---VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS 698 (784)
Q Consensus 627 ----~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~ 698 (784)
.|+ ...+..+...+...|++++|+++++++... .| +...+..+...+...| ++++|+..+++...
T Consensus 349 ~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g-~~~~A~~~l~~al~---- 421 (765)
T PRK10049 349 SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARG-WPRAAENELKKAEV---- 421 (765)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh----
Confidence 122 234556777888888888888888888775 34 5667777777888888 88888888888876
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 699 TSMNFD-EELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 699 ~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
+.|+ ...+..+...+.+.|++++|.++++++.+. .|+......|=
T Consensus 422 --l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~ 467 (765)
T PRK10049 422 --LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLA 467 (765)
T ss_pred --hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 2343 566677777888888888888888888874 66666555443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-14 Score=137.18 Aligned_cols=293 Identities=12% Similarity=0.199 Sum_probs=231.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
+.+..+|.+||.++|+--..+.|.+++.+-.... .+.+..+||.+|.+-+- ....+++.+|....++||..|+|
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k--~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAK--GKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh--heeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHH
Confidence 4466899999999999999999999999998766 58999999999987653 33388999999999999999999
Q ss_pred HHHHHHHHcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH-HHHHHHHhHhc-------CCCCCcHH
Q 003946 528 SLLKAYIEANRPRE----VTALLRDARSAGIQLDASCYEALLQSKIVQKDTPG-ALHLFKEMKES-------KIPRSGHQ 595 (784)
Q Consensus 528 ~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-A~~~~~~m~~~-------~~~~~~~~ 595 (784)
+++++.++.|+++. |.+++.+|++.|+.|...+|..+|.-+++.++..+ |.....++... .+.|.+..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999998765 46778899999999999999999999999888755 44555554432 23467777
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCC---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQR---IDCG---VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFH 669 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 669 (784)
.|...+..|.+..+.+.|.++..-+..+.. +.|+ ..-|..+..+.|.....+.-+..++.|.-.-+-|+..+-.
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 899999999999999999999887775543 2233 2346778888899999999999999998887888999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcc---------------cCCCCCC-------------------------------
Q 003946 670 SMVTGYAAIGGKYTEVTELWGEMKSFA---------------SSTSMNF------------------------------- 703 (784)
Q Consensus 670 ~ll~a~~~~g~~~~~a~~~~~~m~~~~---------------~~~~~~p------------------------------- 703 (784)
.+++|....+ .++-..++|..++..+ ......|
T Consensus 438 ~~lrA~~v~~-~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 438 HLLRALDVAN-RLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHhhcC-cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999988 9988888887776632 0111122
Q ss_pred ----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHH
Q 003946 704 ----DEELLDSVLYTFVRGGFFARANEVVAMMEEGK-MFIDKYKYRTLF 747 (784)
Q Consensus 704 ----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~~~~li 747 (784)
.....+.+.-.+.|.|+.++|.+++.-....| --|-....+.|+
T Consensus 517 ~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~ 565 (625)
T KOG4422|consen 517 AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA 565 (625)
T ss_pred hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence 23344567778889999999999999985443 335555555444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-12 Score=146.82 Aligned_cols=462 Identities=11% Similarity=-0.009 Sum_probs=287.2
Q ss_pred ChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCc--hhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccc
Q 003946 89 DPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRK--TLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKE 166 (784)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 166 (784)
.+.+-..-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...| ...+|...+++.... .+..
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G---~~~~A~~~~eka~~p-----~n~~ 101 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAG---RDQEVIDVYERYQSS-----MNIS 101 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcC---CcHHHHHHHHHhccC-----CCCC
Confidence 34443334445778999999999999988855 543 233 6666666544 445577777776521 1222
Q ss_pred hHHHH--HHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccc
Q 003946 167 PLIYL--SLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNA 244 (784)
Q Consensus 167 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~ 244 (784)
.+..+ ...|...|++++|.++++++.+.... +...+..++..|... ++.++|++.++ ++.
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~--------~q~~eAl~~l~--~l~------- 163 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADA--------GRGGVVLKQAT--ELA------- 163 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhc--------CCHHHHHHHHH--Hhc-------
Confidence 23333 55788889999999999999876433 344444554555543 67777777777 652
Q ss_pred cccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhh
Q 003946 245 PLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQ 324 (784)
Q Consensus 245 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 324 (784)
...|+...+-.++..+...++..+|++.++++.+.. +-+...+..+..+..+.|-...|.++..+-+....+.+..
T Consensus 164 ---~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~ 239 (822)
T PRK14574 164 ---ERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYR 239 (822)
T ss_pred ---ccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHH
Confidence 245555555333333333455555888888887753 2244556667777777787777776665543321111110
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccccccc
Q 003946 325 FRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHIL 404 (784)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (784)
..-...+.-.++.+.... ..+.
T Consensus 240 --~l~~~~~a~~vr~a~~~~-----~~~~--------------------------------------------------- 261 (822)
T PRK14574 240 --QLERDAAAEQVRMAVLPT-----RSET--------------------------------------------------- 261 (822)
T ss_pred --HHHHHHHHHHHhhccccc-----ccch---------------------------------------------------
Confidence 000000000111110000 0000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003946 405 SYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPT-----EKIYIKLVKAFLEAGKTKELTHFLIKAEK 479 (784)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 479 (784)
..-...+.++..+...... .+ ..|. ....--.+.++...|+..++++.|+.+..
T Consensus 262 ------------~r~~~~d~ala~~~~l~~~--------~~-~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 262 ------------ERFDIADKALADYQNLLTR--------WG-KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred ------------hhHHHHHHHHHHHHHHHhh--------cc-CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 0000111111111111000 00 1121 12333566788899999999999999998
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 003946 480 ENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAG-----VRASSSVYASLLKAYIEANRPREVTALLRDARSAGI 554 (784)
Q Consensus 480 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 554 (784)
.+. +.-..+-..+.++|...+++++|..+|..+.... ..++......|..+|...+++++|..+++.+.+.-.
T Consensus 321 ~~~--~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 321 EGY--KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred cCC--CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 883 3334457889999999999999999999997643 233455567899999999999999999999987311
Q ss_pred -------------CCCHHH-HHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 003946 555 -------------QLDASC-YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEV 620 (784)
Q Consensus 555 -------------~p~~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 620 (784)
.||-.. +..++..+...|++.+|++.++++.... |.+......+...+...|.+.+|++.++..
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 122222 3445666778899999999999987765 888888888888888889999999888777
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003946 621 KEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHS 670 (784)
Q Consensus 621 ~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 670 (784)
....+ -+..+.-.....+...|++++|..+.+...+. .|+....-.
T Consensus 477 ~~l~P--~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~ 522 (822)
T PRK14574 477 ESLAP--RSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQE 522 (822)
T ss_pred hhhCC--ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHH
Confidence 66432 24556667777788888899998888888774 565543333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-13 Score=155.58 Aligned_cols=416 Identities=10% Similarity=0.035 Sum_probs=275.3
Q ss_pred cCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccc
Q 003946 162 LLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKK 241 (784)
Q Consensus 162 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~ 241 (784)
..++....-.+......|+.++|++++.+..... ..+...+..+-..+... |++++|..+++ +..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~--------g~~~~A~~~~~--~al---- 76 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNL--------KQWQNSLTLWQ--KAL---- 76 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc--------CCHHHHHHHHH--HHH----
Confidence 3455566667777888999999999999887522 22344567776666665 78889999888 642
Q ss_pred ccccccCCCC-chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 003946 242 CNAPLIAMKP-NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNL 320 (784)
Q Consensus 242 ~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 320 (784)
...| +...+..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+..+.
T Consensus 77 ------~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 77 ------SLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ 148 (765)
T ss_pred ------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 2334 45566777788899999999999999998763 33445 888888999999999999999999997555
Q ss_pred ChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccc
Q 003946 321 SDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIE 400 (784)
Q Consensus 321 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (784)
+.. ++..+...+.+.|..++|++.++......- +
T Consensus 149 ~~~----~~~~la~~l~~~~~~e~Al~~l~~~~~~p~--~---------------------------------------- 182 (765)
T PRK10049 149 TQQ----YPTEYVQALRNNRLSAPALGAIDDANLTPA--E---------------------------------------- 182 (765)
T ss_pred CHH----HHHHHHHHHHHCCChHHHHHHHHhCCCCHH--H----------------------------------------
Confidence 544 477788889999999999998875554100 0
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCH-HHHHHHHHHHHHcCCh---HHHHHHHHH
Q 003946 401 NHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTE-KIYIKLVKAFLEAGKT---KELTHFLIK 476 (784)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~---~~a~~~~~~ 476 (784)
.... .. .|.. .....+.......+++ ++|++.++.
T Consensus 183 ------------~~~l----~~-------------------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 183 ------------KRDL----EA-------------------------DAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred ------------HHHH----HH-------------------------HHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 0000 00 0000 0000011111222233 667777777
Q ss_pred HHHcCCCCCCCHH-HHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 477 AEKENLQVSHDDA-ALG----HVITLCISLGWLDQAHDLLDEMHLAGVR-ASSSVYASLLKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 477 m~~~~~~~~p~~~-~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 550 (784)
+.+... ..|+.. .+. ..+.++...|++++|...|+.+.+.+.+ |+. .-..+...|...|++++|+..|+++.
T Consensus 222 ll~~~~-~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 222 LEALWH-DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHhhcc-cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 765411 122221 111 1133445667888888888888776532 322 11224667888888888888888876
Q ss_pred HcCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC-----------CCCc--HHHHHHHHHHHHhcCcHHHHH
Q 003946 551 SAGIQL---DASCYEALLQSKIVQKDTPGALHLFKEMKESKI-----------PRSG--HQEFEMLVKGCAQNHEAGLMA 614 (784)
Q Consensus 551 ~~g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~~~~--~~~~~~ll~~~~~~~~~~~a~ 614 (784)
+..... ....+..+..++.+.|++++|...++++....- .|.+ ...+..+...+...|++++|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 542111 123455666677788888888888888776430 0121 224556677788888888888
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003946 615 KLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMK 693 (784)
Q Consensus 615 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~ 693 (784)
+.++++....+- +...+..+...+...|++++|++.+++.... .|+ ...+......+...| ++++|..+++++.
T Consensus 380 ~~l~~al~~~P~--n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~-~~~~A~~~~~~ll 454 (765)
T PRK10049 380 MRARELAYNAPG--NQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQ-EWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHH
Confidence 888888776542 4567888888888889999999999888874 575 455556666777778 8999999998887
Q ss_pred h
Q 003946 694 S 694 (784)
Q Consensus 694 ~ 694 (784)
+
T Consensus 455 ~ 455 (765)
T PRK10049 455 A 455 (765)
T ss_pred H
Confidence 7
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-12 Score=147.88 Aligned_cols=435 Identities=10% Similarity=0.027 Sum_probs=298.7
Q ss_pred HHHHHhhhhhccCCcCccccccccccCCCCchh-hHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHh
Q 003946 222 ELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTN-TFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYER 300 (784)
Q Consensus 222 ~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 300 (784)
|+++.|+..|+ +.. ...|+.. ....++..+...|+.++|+..++..... -.........+...|..
T Consensus 48 Gd~~~Al~~L~--qaL----------~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 48 GDTAPVLDYLQ--EES----------KAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRN 114 (822)
T ss_pred CCHHHHHHHHH--HHH----------hhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHH
Confidence 88889999998 663 2456642 2238888888999999999999998721 11222334444668889
Q ss_pred cCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCC
Q 003946 301 NGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTP 380 (784)
Q Consensus 301 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (784)
.|++++|.++|+++.+..+.+.. ++..++..|.+.++.++|++.+++....+..
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~----~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~---------------------- 168 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPD----LISGMIMTQADAGRGGVVLKQATELAERDPT---------------------- 168 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHhhcCCHHHHHHHHHHhcccCcc----------------------
Confidence 99999999999999998666644 5778899999999999999999998875420
Q ss_pred CCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHH
Q 003946 381 SEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVK 459 (784)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~ 459 (784)
..+...+ ..+ ........++...++.+.. ..| +...+..++.
T Consensus 169 -----------------~~~~l~l---ayL--~~~~~~~~~AL~~~ekll~---------------~~P~n~e~~~~~~~ 211 (822)
T PRK14574 169 -----------------VQNYMTL---SYL--NRATDRNYDALQASSEAVR---------------LAPTSEEVLKNHLE 211 (822)
T ss_pred -----------------hHHHHHH---HHH--HHhcchHHHHHHHHHHHHH---------------hCCCCHHHHHHHHH
Confidence 0000000 000 0000001112222222211 245 6777888889
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCHHHH------HHHHHHH-----HHcCC---HHHHHHHHHHHHHc-CCCCC--
Q 003946 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDAAL------GHVITLC-----ISLGW---LDQAHDLLDEMHLA-GVRAS-- 522 (784)
Q Consensus 460 ~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~------~~li~~~-----~~~g~---~~~a~~~~~~m~~~-g~~~~-- 522 (784)
++.+.|-...|.++..+-..- +.+...-+ ...++.- ....+ .+.|..-++.+... +-.|.
T Consensus 212 ~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~ 288 (822)
T PRK14574 212 ILQRNRIVEPALRLAKENPNL---VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQ 288 (822)
T ss_pred HHHHcCCcHHHHHHHHhCccc---cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccc
Confidence 999999999888776653311 12222111 1111110 01112 34455555555542 11132
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC----CCCcHH
Q 003946 523 ---SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKI----PRSGHQ 595 (784)
Q Consensus 523 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~ 595 (784)
....--.+-++...|++.++++.|+.|...|......+--.+..+|...+++++|+.+++++..... .+++..
T Consensus 289 ~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~ 368 (822)
T PRK14574 289 ADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLL 368 (822)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchH
Confidence 2222345677888999999999999999888665667889999999999999999999999866431 233444
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCC------------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQR------------IDCG-VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHL 662 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 662 (784)
....|.-++...+++++|..+++.+.+..+ ..|| ...+..++..+...|++.+|++.++++... .
T Consensus 369 ~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--a 446 (822)
T PRK14574 369 DADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--A 446 (822)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 467899999999999999999999987433 1122 233455677889999999999999999875 4
Q ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003946 663 P-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDK 740 (784)
Q Consensus 663 p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 740 (784)
| |......+...+...| ...+|+..++.... +.| +..+.......+...|+|++|.++.+...+. .|+.
T Consensus 447 P~n~~l~~~~A~v~~~Rg-~p~~A~~~~k~a~~------l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~ 517 (822)
T PRK14574 447 PANQNLRIALASIYLARD-LPRKAEQELKAVES------LAPRSLILERAQAETAMALQEWHQMELLTDDVISR--SPED 517 (822)
T ss_pred CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhh------hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCc
Confidence 5 7788888888999999 99999999977765 334 4667778888999999999999999988874 6776
Q ss_pred HHHHHH
Q 003946 741 YKYRTL 746 (784)
Q Consensus 741 ~~~~~l 746 (784)
.....|
T Consensus 518 ~~~~~l 523 (822)
T PRK14574 518 IPSQEL 523 (822)
T ss_pred hhHHHH
Confidence 655543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-11 Score=133.99 Aligned_cols=552 Identities=13% Similarity=0.068 Sum_probs=367.1
Q ss_pred hhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCccHH
Q 003946 106 YGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPAS 185 (784)
Q Consensus 106 ~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 185 (784)
.+.|.+.|....+.. |+.. ...+.+++...+ -+++..++.++..+...... ..+++....-.++.++|+.+.|+
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Ni-l~LlGkA~i~yn-kkdY~~al~yyk~al~inp~--~~aD~rIgig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNI-LALLGKARIAYN-KKDYRGALKYYKKALRINPA--CKADVRIGIGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhhC--Ccch-HHHHHHHHHHhc-cccHHHHHHHHHHHHhcCcc--cCCCccchhhhHHHhccchhhHH
Confidence 588999999888754 4443 355667776643 56778899999997765222 34555555567788999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHHHH--HHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHh
Q 003946 186 TILRKLVATEQYPPVTAWSAILA--HMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGC 263 (784)
Q Consensus 186 ~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~ 263 (784)
..|.+..+. .| ...++++. .+... +..+..+..+..++. +.- .--.-|++..|.|-..|
T Consensus 220 ~a~~ralqL--dp--~~v~alv~L~~~~l~----~~d~~s~~~~~~ll~--~ay---------~~n~~nP~~l~~LAn~f 280 (1018)
T KOG2002|consen 220 LAFERALQL--DP--TCVSALVALGEVDLN----FNDSDSYKKGVQLLQ--RAY---------KENNENPVALNHLANHF 280 (1018)
T ss_pred HHHHHHHhc--Ch--hhHHHHHHHHHHHHH----ccchHHHHHHHHHHH--HHH---------hhcCCCcHHHHHHHHHH
Confidence 999999885 34 33333332 22211 112245556666555 321 11245677788899999
Q ss_pred hhcCChhHHHHHHHhhhhCCCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-hhhHHHHHHHHHHHHHhcC
Q 003946 264 LLFETTRKAEQLLDIMPRIGVK--ADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLS-DIQFRQFYNCLLSCHLKFG 340 (784)
Q Consensus 264 ~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g 340 (784)
.-.|+++.++.+...+...-.. .-...|-.+..+|-..|+++.|...|-+..+.+..+ .- .+--|..+|.+.|
T Consensus 281 yfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l----~~~GlgQm~i~~~ 356 (1018)
T KOG2002|consen 281 YFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL----PLVGLGQMYIKRG 356 (1018)
T ss_pred hhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc----cccchhHHHHHhc
Confidence 9999999999999999875421 112457778899999999999999998887764444 22 3677899999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhh-hhhhhhHHHH
Q 003946 341 DLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDF-TKDRKFVALE 419 (784)
Q Consensus 341 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 419 (784)
+++.+...|+....... +.. ..|...|.+ ..........
T Consensus 357 dle~s~~~fEkv~k~~p--------------------------------------~~~--etm~iLG~Lya~~~~~~~~~ 396 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQLP--------------------------------------NNY--ETMKILGCLYAHSAKKQEKR 396 (1018)
T ss_pred hHHHHHHHHHHHHHhCc--------------------------------------chH--HHHHHHHhHHHhhhhhhHHH
Confidence 99999999999887531 000 000000000 0000000111
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----HHcCCCCCCCHHHHHHHH
Q 003946 420 AEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKA----EKENLQVSHDDAALGHVI 495 (784)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~~~p~~~~~~~li 495 (784)
..+..++...+ .....|...|-.+-..+.... ...++..|... ...+. .+-....|.+.
T Consensus 397 d~a~~~l~K~~--------------~~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~--~ip~E~LNNva 459 (1018)
T KOG2002|consen 397 DKASNVLGKVL--------------EQTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGK--QIPPEVLNNVA 459 (1018)
T ss_pred HHHHHHHHHHH--------------hcccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCC--CCCHHHHHhHH
Confidence 12222222221 112336667766666665544 33336665543 34553 35566699999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HHHHH
Q 003946 496 TLCISLGWLDQAHDLLDEMHLA---GVRASS------SVYASLLKAYIEANRPREVTALLRDARSAGIQLDASC-YEALL 565 (784)
Q Consensus 496 ~~~~~~g~~~~a~~~~~~m~~~---g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~li 565 (784)
..+...|+++.|...|...... ...++. .+--.+...+-..++.+.|..+|..+.+. .|+-+. |--+.
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~ 537 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhh
Confidence 9999999999999999988755 122333 22223555566678899999999999876 566554 33333
Q ss_pred HHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH----
Q 003946 566 QSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFC---- 641 (784)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~---- 641 (784)
......+...+|...+++..... ..++..++.+...+.+...+..|.+-|..+.......+|+++.-+|...|.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 23334578889999999988765 455667888887888888888999877777666555567766655555443
Q ss_pred --------hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 003946 642 --------KKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVL 712 (784)
Q Consensus 642 --------~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li 712 (784)
..+..++|+++|.+.++. .| |...-+.+.-.++..| ++++|..+|.++.+.. .-...+|-.+.
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg-~~~~A~dIFsqVrEa~-----~~~~dv~lNla 687 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKG-RFSEARDIFSQVREAT-----SDFEDVWLNLA 687 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhhhhhcc-CchHHHHHHHHHHHHH-----hhCCceeeeHH
Confidence 234568899999998875 34 6677777777788888 9999999999998832 22456788899
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHhcccc
Q 003946 713 YTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF-LKYHKTLY 755 (784)
Q Consensus 713 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li-~~~~~~~~ 755 (784)
+.|...|++-.|.++|+...+.-.+-|....-..+ ..+...+.
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999888764555555444444 34444333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-12 Score=125.48 Aligned_cols=436 Identities=12% Similarity=0.053 Sum_probs=276.6
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhc-------------
Q 003946 92 KLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEG------------- 158 (784)
Q Consensus 92 ~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~------------- 158 (784)
+=|.+++ ...+|..+++.-+|+.|.+.|..-+...-..|+.-.+-.++..-.-.-.+.|..|...+
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 3444443 34678999999999999998876555555555544432221110000011111111110
Q ss_pred ----ccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccC
Q 003946 159 ----KQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDG 234 (784)
Q Consensus 159 ----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~ 234 (784)
+-.+-.+.++..+|.++||--..+.|.+++.+-.+...+.+..+||.+|.+-. +...-++..
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S------------~~~~K~Lv~-- 262 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS------------YSVGKKLVA-- 262 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH------------hhccHHHHH--
Confidence 01123677889999999999999999999999998888889999999997532 222234455
Q ss_pred CcCccccccccccCCCCchhhHHHHHHHhhhcCChhH----HHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHH-HHH
Q 003946 235 RVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRK----AEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREE-LRK 309 (784)
Q Consensus 235 ~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~----A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~-A~~ 309 (784)
+|.. ..+.||..|+|++++..++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..
T Consensus 263 EMis--------qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 263 EMIS--------QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred HHHH--------hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 5544 4569999999999999999998875 46789999999999999999999999999887644 444
Q ss_pred HHHHHHhh-----cCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCcc
Q 003946 310 LQRHIDEA-----VNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQN 384 (784)
Q Consensus 310 l~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (784)
+..++... ..|..+.....+-+.++.|.+..+.+-|.++-.-+...+-
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N--------------------------- 387 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN--------------------------- 387 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc---------------------------
Confidence 44444332 2222222222577778888888888888886554443210
Q ss_pred ccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC---CHHHHHHHHHHH
Q 003946 385 VNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP---TEKIYIKLVKAF 461 (784)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~~li~~~ 461 (784)
... +.| ..+-|..+....
T Consensus 388 ------------------------------~~~-----------------------------ig~~~~~~fYyr~~~~li 408 (625)
T KOG4422|consen 388 ------------------------------WKF-----------------------------IGPDQHRNFYYRKFFDLI 408 (625)
T ss_pred ------------------------------hhh-----------------------------cChHHHHHHHHHHHHHHH
Confidence 000 122 124566778888
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPRE 541 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 541 (784)
|+....+.....|+.|...- .-|+..+...++.+..-.|.++-..+++.++...|...+...-.
T Consensus 409 cq~es~~~~~~~Y~~lVP~~--y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e-------------- 472 (625)
T KOG4422|consen 409 CQMESIDVTLKWYEDLVPSA--YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE-------------- 472 (625)
T ss_pred HHHHHHHHHHHHHHHhccce--ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH--------------
Confidence 89999999999999998776 68899999999999999999999999999999887433332222
Q ss_pred HHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCChhHH-HHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHH
Q 003946 542 VTALLRDARSAGIQLDAS---CYEALLQSKIVQKDTPGA-LHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLL 617 (784)
Q Consensus 542 A~~~~~~m~~~g~~p~~~---t~~~li~~~~~~g~~~~A-~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 617 (784)
.+...|......|+.- -+.....-|+ -++.++ ...-.+|.+.... ....+.++-.+.+.|+.++|.++|
T Consensus 473 --eil~~L~~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~~~---~t~l~~ia~Ll~R~G~~qkA~e~l 545 (625)
T KOG4422|consen 473 --EILMLLARDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQDWP---ATSLNCIAILLLRAGRTQKAWEML 545 (625)
T ss_pred --HHHHHHhcCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhccCC---hhHHHHHHHHHHHcchHHHHHHHH
Confidence 2333333333334322 1222222221 122222 2233344444442 235566666667777777777777
Q ss_pred HHHHhcCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 618 QEVKEGQRIDCGVHDWN---NVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 618 ~~~~~~~~~~p~~~~y~---~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
..+.....-.|.....| -+++.-.+.+....|...++-|...
T Consensus 546 ~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 546 GLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 77744333233333334 4445555666677777777666544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7e-11 Score=125.97 Aligned_cols=618 Identities=10% Similarity=0.018 Sum_probs=330.8
Q ss_pred CCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccc
Q 003946 87 ARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKE 166 (784)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 166 (784)
.||-.+|.++|..||..|+.+.|- +|.-|.-....-+...++.++.+-...++.+..+ .|.++
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------------ep~aD 84 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------------EPLAD 84 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------------CCchh
Confidence 455688888888888888888877 7777766555555667777777766655544422 47889
Q ss_pred hHHHHHHHHhhCCCCcc---HHHHHHHHh----hcCCCCChHHHHHH-HHHHhhcCCC------chhhHHHHHHhhhhhc
Q 003946 167 PLIYLSLGLSKCGLPVP---ASTILRKLV----ATEQYPPVTAWSAI-LAHMSLTAPG------AYLAAELILEIGYLFQ 232 (784)
Q Consensus 167 ~~~~li~~~~~~g~~~~---A~~~~~~m~----~~g~~p~~~~~~~l-l~~~~~~~~~------~~~~~~~~~~a~~~~~ 232 (784)
+|+.|..+|...|++.. ..+.++.+. ..|+. ....|-.+ |+++-..-.. .....|.++.++++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998655 222222221 11221 11111111 1111000000 0122366666776665
Q ss_pred cCCcCccccccccccCCCCchhhHHHHHHHhhhcC-ChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 003946 233 DGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFE-TTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQ 311 (784)
Q Consensus 233 ~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~ 311 (784)
.++... -..|-.+ .|+-+.... .+++-....+...+ .|++.+|.++++.-.-.|+++.|..++
T Consensus 164 --~~Pvsa-------~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 164 --KVPVSA-------WNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred --hCCccc-------ccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 443210 0112222 244333322 22222222222222 488899999999989999999999999
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHH-----HHHhch-----hhhhhccCCCCCC
Q 003946 312 RHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNS-----LAAAML-----PFNAVGVNNRTPS 381 (784)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~~ 381 (784)
.+|.+.+.|-...+ .|--|+. .++..-+..+++.|.+.|+.|-.. ++..+. .-+...+.+..+.
T Consensus 228 ~emke~gfpir~Hy--FwpLl~g----~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~t 301 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHY--FWPLLLG----INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFT 301 (1088)
T ss_pred HHHHHcCCCccccc--chhhhhc----CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhh
Confidence 99998877766654 3444433 778888888888888887643110 000000 0000000000000
Q ss_pred Ccc--ccCCC-----------------------Cccccccccccccccch-------------------hhhhhhhhhHH
Q 003946 382 EQN--VNCTN-----------------------SVDLENSGIIENHILSY-------------------EDFTKDRKFVA 417 (784)
Q Consensus 382 ~~~--~~~~~-----------------------~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~ 417 (784)
..+ ..|.+ +.+...+..+|...... -..........
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a 381 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDA 381 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHH
Confidence 000 00000 00111111111111100 00000011111
Q ss_pred HHHHHHHHHHHHhhhHHH-----HHHHH------------hhhcCCcCCC----------------------------HH
Q 003946 418 LEAEVKRVLQTLLGMLQK-----QVELI------------TTEHGILQPT----------------------------EK 452 (784)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~-----~~~~~------------~~~~~~~~p~----------------------------~~ 452 (784)
.+....+.|..+...... ..++. +... ...|| ..
T Consensus 382 ~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~-~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ird 460 (1088)
T KOG4318|consen 382 FGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLE-NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRD 460 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHH-HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHH
Confidence 111122222222111000 00000 0000 00111 12
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAG--VRASSSVYASLL 530 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li 530 (784)
.-+.++..|+..-+..++...-+.....- .+ ..|..||+-++.....+.|..+.++..... +..|..-+..+.
T Consensus 461 i~~ql~l~l~se~n~lK~l~~~ekye~~l---f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 461 IANQLHLTLNSEYNKLKILCDEEKYEDLL---FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHH
Confidence 34556666666666666655444433322 23 558999999999999999999999987543 456778889999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCC-----------------
Q 003946 531 KAYIEANRPREVTALLRDARSAGI-QLD-ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPR----------------- 591 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----------------- 591 (784)
+.+.+.+....+..++.++.+.-. .|+ ..+.-.+++.....|+.+...++++-+...|+..
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a 615 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAA 615 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhh
Confidence 999999999999999999976422 222 4456667777788888888877777666555421
Q ss_pred ------------CcHHHHHHHHHH---------------------HHhcCcHHHHHHHHHHH-----------HhcCCCC
Q 003946 592 ------------SGHQEFEMLVKG---------------------CAQNHEAGLMAKLLQEV-----------KEGQRID 627 (784)
Q Consensus 592 ------------~~~~~~~~ll~~---------------------~~~~~~~~~a~~~~~~~-----------~~~~~~~ 627 (784)
+.+.....+.+. |.+.|++.++.++.+-- ...+.+.
T Consensus 616 ~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~ 695 (1088)
T KOG4318|consen 616 QEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIV 695 (1088)
T ss_pred hhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccc
Confidence 111111111111 22333333332222100 0000011
Q ss_pred C---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC
Q 003946 628 C---------GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS 698 (784)
Q Consensus 628 p---------~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~ 698 (784)
| +.....-|+..|.+.|++++|..++.+|. +.|+..+...|...+.+.. .-...-+++.+-.+.-..
T Consensus 696 ~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n-~evdvPe~q~e~ekas~~ 771 (1088)
T KOG4318|consen 696 PLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMN-EEVDVPEIQAETEKASEL 771 (1088)
T ss_pred cHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhc-hhccchhHHHHHHHHHhc
Confidence 1 12233458889999999999999999998 7888888888888777766 444445555443332111
Q ss_pred CCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccc
Q 003946 699 TSMNFDEE-LLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKTL 754 (784)
Q Consensus 699 ~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~~ 754 (784)
....|... -|.-.+...++-...+.|.++|.+..+.....+..++.-++..+.++.
T Consensus 772 ~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 772 RTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND 828 (1088)
T ss_pred ccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC
Confidence 22223333 333334444444556689999999999888888888888885555544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-10 Score=112.12 Aligned_cols=247 Identities=12% Similarity=0.136 Sum_probs=166.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003946 466 KTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTAL 545 (784)
Q Consensus 466 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 545 (784)
++.+|.+.-+.....+ +-+......-.......|++++|.+.|.+.....-.-....||+=+ .+-+.|++++|++.
T Consensus 471 ~~~~aqqyad~aln~d---ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~ 546 (840)
T KOG2003|consen 471 DFADAQQYADIALNID---RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDC 546 (840)
T ss_pred chhHHHHHHHHHhccc---ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHH
Confidence 4555555555544433 2333322222233345688888888888888764332333344322 35677888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 003946 546 LRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQR 625 (784)
Q Consensus 546 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 625 (784)
|-++... +.-+....--+.+.|-...+..+|++++.+. ..+.|.++....-|...|.+.|+-..|.+.+-.--.-
T Consensus 547 f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~--~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-- 621 (840)
T KOG2003|consen 547 FLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA--NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-- 621 (840)
T ss_pred HHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh--cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--
Confidence 8776432 1235566666777777778888888887554 3456888888888888888888877777665433322
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCH
Q 003946 626 IDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDE 705 (784)
Q Consensus 626 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~ 705 (784)
+.-++.+..-|..-|....-+++|+..|++..- +.|+..-|-.++..|.+..|++.+|..+++.+.+ .++-|.
T Consensus 622 fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-----kfpedl 694 (840)
T KOG2003|consen 622 FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-----KFPEDL 694 (840)
T ss_pred cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-----hCccch
Confidence 223677777777888888888899999887765 6889999988888777655599999999888875 466688
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHH
Q 003946 706 ELLDSVLYTFVRGGFFARANEVVA 729 (784)
Q Consensus 706 ~~~~~li~~~~~~g~~~~A~~l~~ 729 (784)
.+..-|++.+...|. .++.+.-+
T Consensus 695 dclkflvri~~dlgl-~d~key~~ 717 (840)
T KOG2003|consen 695 DCLKFLVRIAGDLGL-KDAKEYAD 717 (840)
T ss_pred HHHHHHHHHhccccc-hhHHHHHH
Confidence 888888888877774 33433333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-08 Score=104.64 Aligned_cols=370 Identities=13% Similarity=0.076 Sum_probs=188.4
Q ss_pred cCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhh
Q 003946 247 IAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADS--NLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQ 324 (784)
Q Consensus 247 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 324 (784)
.|+.-|...|-.=...|-+.|..-.+..+....+..|+.-.. .||+.-...|.+.+.++-|..+|....+-.+-...
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~s- 551 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKS- 551 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhH-
Confidence 455555556666666666666666666666666666654332 56777777777777777777777776664333322
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccccccc
Q 003946 325 FRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHIL 404 (784)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (784)
+|...+..=-..|..++-..+|++....
T Consensus 552 ---lWlra~~~ek~hgt~Esl~Allqkav~~------------------------------------------------- 579 (913)
T KOG0495|consen 552 ---LWLRAAMFEKSHGTRESLEALLQKAVEQ------------------------------------------------- 579 (913)
T ss_pred ---HHHHHHHHHHhcCcHHHHHHHHHHHHHh-------------------------------------------------
Confidence 5777666666667777766666665542
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003946 405 SYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQV 484 (784)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 484 (784)
.+-....|--....+-..|+...|..++...-+..
T Consensus 580 ------------------------------------------~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--- 614 (913)
T KOG0495|consen 580 ------------------------------------------CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--- 614 (913)
T ss_pred ------------------------------------------CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC---
Confidence 11122333333344444555555555555555443
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHH
Q 003946 485 SHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDAS-CYEA 563 (784)
Q Consensus 485 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 563 (784)
+.+...|..-+..-....+++.|+.+|.+.... .|+..+|.--+...--.++.++|.+++++..+. -|+-. .|-.
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lm 690 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLM 690 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHH
Confidence 334445555555555555555555555555443 244444444444444445555555555555443 34433 2333
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 003946 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK 643 (784)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~ 643 (784)
+-..+-+.++++.|.+.|..-.+. .|.....|-.|...=.+.|.+..|..+|+...-+++ -+...|-..|.+-.+.
T Consensus 691 lGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP--k~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP--KNALLWLESIRMELRA 766 (913)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC--CcchhHHHHHHHHHHc
Confidence 333444445555555544432221 233344455555555555555555555555554432 2344455555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHH
Q 003946 644 RLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFAR 723 (784)
Q Consensus 644 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 723 (784)
|..+.|..+..+.++. ++-+...|..-|....+.+ +-......+++-. -|+.+.-.+...+....++++
T Consensus 767 gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~-rkTks~DALkkce---------~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQ-RKTKSIDALKKCE---------HDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred CCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcc-cchHHHHHHHhcc---------CCchhHHHHHHHHHHHHHHHH
Confidence 5555555555555443 2223344444444333333 3222222222211 133344444444444444555
Q ss_pred HHHHHHHHHh
Q 003946 724 ANEVVAMMEE 733 (784)
Q Consensus 724 A~~l~~~m~~ 733 (784)
|.+.|.+..+
T Consensus 836 ar~Wf~Ravk 845 (913)
T KOG0495|consen 836 AREWFERAVK 845 (913)
T ss_pred HHHHHHHHHc
Confidence 5555554444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-10 Score=120.33 Aligned_cols=284 Identities=10% Similarity=0.081 Sum_probs=182.6
Q ss_pred cCChhHHHHHHHhhhhCCCCCChhH-HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhH
Q 003946 266 FETTRKAEQLLDIMPRIGVKADSNL-LIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNS 344 (784)
Q Consensus 266 ~g~~~~A~~l~~~m~~~g~~pd~~~-~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 344 (784)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+.+.++.+..+..... ........+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~---~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLP---VEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHH---HHHHHHHHHHHCCCHHH
Confidence 588888887777654432 22222 3333444578888888888888887743333221 12234667788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHH
Q 003946 345 ASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKR 424 (784)
Q Consensus 345 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (784)
|...++++.+.
T Consensus 172 Al~~l~~~~~~--------------------------------------------------------------------- 182 (398)
T PRK10747 172 ARHGVDKLLEV--------------------------------------------------------------------- 182 (398)
T ss_pred HHHHHHHHHhc---------------------------------------------------------------------
Confidence 88888887763
Q ss_pred HHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCH------HHHHHHHHH
Q 003946 425 VLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDD------AALGHVITL 497 (784)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~------~~~~~li~~ 497 (784)
.| ++..+..+...|.+.|++++|.+++..+.+... ..++. .+|..++..
T Consensus 183 -----------------------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 183 -----------------------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-GDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred -----------------------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHH
Confidence 33 456777788888888888888888888887762 11221 122333333
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 003946 498 CISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGA 577 (784)
Q Consensus 498 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 577 (784)
.....+.+...++++.+.+. .+.+......+...+...|+.++|..++++..+. .||.. ..++.+....++.+++
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~a 313 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQL 313 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHH
Confidence 33444455556666655433 2446777778888888888888888888887764 44442 1233344455777888
Q ss_pred HHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 578 LHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 578 ~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 657 (784)
++..+...+.. |+++..+.++...|.+.+++++|.+.|+...+. .|+...|-.+...+.+.|+.++|.+++++-.
T Consensus 314 l~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 314 EKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88887777654 666666666667777777777777777666653 3566666666666677777777766666554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.1e-08 Score=98.09 Aligned_cols=505 Identities=10% Similarity=0.069 Sum_probs=331.2
Q ss_pred hhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhh
Q 003946 141 SKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLA 220 (784)
Q Consensus 141 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~ 220 (784)
.....+|..++++.+.. . ..+...+..-+.+=.++..+..|..++++.+..=+..|..-|.-+. .=-.
T Consensus 86 q~e~~RARSv~ERALdv-d--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y-mEE~-------- 153 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDV-D--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY-MEEM-------- 153 (677)
T ss_pred HHHHHHHHHHHHHHHhc-c--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH-HHHH--------
Confidence 45566677777776654 1 1122233335566678888999999999987653333433333222 1111
Q ss_pred HHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHh
Q 003946 221 AELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYER 300 (784)
Q Consensus 221 ~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 300 (784)
.|.+..|..+|+ +. ....|+..+|++.|.--.+-...+.|..+|+...- +.|+..+|.-....=-+
T Consensus 154 LgNi~gaRqife--rW----------~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k 219 (677)
T KOG1915|consen 154 LGNIAGARQIFE--RW----------MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEK 219 (677)
T ss_pred hcccHHHHHHHH--HH----------HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHh
Confidence 277888888998 76 44799999999999999999999999999999876 35999999988888899
Q ss_pred cCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH---HHHHhchhhhhhccCC
Q 003946 301 NGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARN---SLAAAMLPFNAVGVNN 377 (784)
Q Consensus 301 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~~~~~~~~~~~ 377 (784)
+|.+..|..+|+...+.-.. +.....++++....=.++..++.|.-+|.-..+. .|.+ .+...+..|+..=.+.
T Consensus 220 ~g~~~~aR~VyerAie~~~~-d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~ 296 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEFLGD-DEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDK 296 (677)
T ss_pred cCcHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcch
Confidence 99999999999988775222 2221224455544445566777777777655442 1111 1112222221110000
Q ss_pred CCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHH
Q 003946 378 RTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKL 457 (784)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 457 (784)
... . ..-..+.....+..+. .-.-|-.+|-..
T Consensus 297 ~gI--------------------------E----d~Iv~KRk~qYE~~v~------------------~np~nYDsWfdy 328 (677)
T KOG1915|consen 297 EGI--------------------------E----DAIVGKRKFQYEKEVS------------------KNPYNYDSWFDY 328 (677)
T ss_pred hhh--------------------------H----HHHhhhhhhHHHHHHH------------------hCCCCchHHHHH
Confidence 000 0 0000000001111111 123367788888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCCH-------HHHHHHHHHH---HHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 458 VKAFLEAGKTKELTHFLIKAEKENLQVSHDD-------AALGHVITLC---ISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 458 i~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~-------~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
+..-...|+.+...++|++....- +|-. .+|.-+=-+| ....+.+.+.++|+..++. ++...+||.
T Consensus 329 lrL~e~~g~~~~Ire~yErAIanv---pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFa 404 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIANV---PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFA 404 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHccC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHH
Confidence 888889999999999999998664 5533 1222111122 2467899999999999984 566677777
Q ss_pred HHHHHHH----HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHH
Q 003946 528 SLLKAYI----EANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG 603 (784)
Q Consensus 528 ~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~ 603 (784)
-+=-+|+ ++.++..|.+++.... |..|-..++...|..=.+.++++....+++...+-+ |.+..+|.-....
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PENCYAWSKYAEL 480 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hHhhHHHHHHHHH
Confidence 6655555 6688999999988765 568999999999999999999999999999999876 8889999999888
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcC--
Q 003946 604 CAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVT--GYAAIG-- 679 (784)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--a~~~~g-- 679 (784)
=...|+.+.|..+|+-........-....|.+.|+--...|.+++|..+++++++. .+....|-++.. +-...|
T Consensus 481 E~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~ 558 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQE 558 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhcccccccc
Confidence 89999999999999999877655556778999999999999999999999999986 344445554432 111112
Q ss_pred C-----------CHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 680 G-----------KYTEVTELWGEMKSFASSTSMNFD-EELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 680 ~-----------~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
+ +...|..+|+......+..+.+-. ........+.=...|...+...+-..|+
T Consensus 559 ~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 559 DEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred ccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 1 345677777776554333222111 1122233333344455445554544444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-09 Score=104.31 Aligned_cols=283 Identities=12% Similarity=0.050 Sum_probs=213.2
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHHcCCh
Q 003946 463 EAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAG-VRAS--SSVYASLLKAYIEANRP 539 (784)
Q Consensus 463 ~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~ 539 (784)
-+.+.++|..+|-+|.+.. +.+..+-.+|.+-|-+.|..+.|+++++.+.++. .+.+ ....--|..=|...|-+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d---~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED---PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hhcCcchHHHHHHHHHhcC---chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 3578899999999999876 5666677889999999999999999999998762 1111 23334567778999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcH---HHHHHHHHHHHhcCcHHHHHHH
Q 003946 540 REVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGH---QEFEMLVKGCAQNHEAGLMAKL 616 (784)
Q Consensus 540 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~ 616 (784)
|.|+.+|..+.+.| ..-....-.|+..|-...+|++|+++-+++.+.+-.+.+. ..|.-+...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998754 3355677889999999999999999999998877543322 2466666667777889999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 003946 617 LQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFA 696 (784)
Q Consensus 617 ~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~ 696 (784)
+.+..+.++. .+..=-.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.| +.++...++..+.+
T Consensus 203 l~kAlqa~~~--cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg-~~~~~~~fL~~~~~-- 277 (389)
T COG2956 203 LKKALQADKK--CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG-KPAEGLNFLRRAME-- 277 (389)
T ss_pred HHHHHhhCcc--ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHH--
Confidence 9998876531 233334566778899999999999999998753334667788999999999 99999999998877
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcccccCCch
Q 003946 697 SSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKTLYKGKTP 760 (784)
Q Consensus 697 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~~~~~~a~ 760 (784)
. .+....-..+-..-....-.+.|...+.+-..+ +|+..-+..||..-..+.+.|.+.
T Consensus 278 --~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k 335 (389)
T COG2956 278 --T--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAK 335 (389)
T ss_pred --c--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchh
Confidence 2 233333344444444444456777666665554 799999999997666676666433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.8e-10 Score=117.57 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKE 480 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 480 (784)
.+..+...+.+.|++++|.+++..+.+.
T Consensus 189 ~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 189 VLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3344444444444444444444444443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-10 Score=112.82 Aligned_cols=440 Identities=12% Similarity=0.088 Sum_probs=245.8
Q ss_pred HHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhh--HHHHHHHHHH
Q 003946 258 IALAGCLLFETTRKAEQLLDIMPRIGVKADSNLL-IIMAHIYERNGRREELRKLQRHIDEAVNLSDIQ--FRQFYNCLLS 334 (784)
Q Consensus 258 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~-~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~--~~~~~~~li~ 334 (784)
.+..-|.-.....+|+..|+-+.+...-|+.-.. ..+.+.+.+...+.+|.+.++..... +|+... ...+.+.+--
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq-vpsink~~rikil~nigv 284 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ-VPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh-ccccchhhHHHHHhhcCe
Confidence 3444555667788999999999888777877433 45667788999999999998876664 333222 1123455555
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhh
Q 003946 335 CHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRK 414 (784)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (784)
.|++.|.++.|+.-|+...+... .++.++.+ ++ ..|.
T Consensus 285 tfiq~gqy~dainsfdh~m~~~p----n~~a~~nl---------------------------------~i--~~f~---- 321 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEEAP----NFIAALNL---------------------------------II--CAFA---- 321 (840)
T ss_pred eEEecccchhhHhhHHHHHHhCc----cHHhhhhh---------------------------------hh--hhee----
Confidence 68899999999999998877431 11111110 00 0000
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHhhh---cCCcCCCHHHHHHHHHHH-HHc---CChHHHHHHHHHHHHc-CCCCCC
Q 003946 415 FVALEAEVKRVLQTLLGMLQKQVELITTE---HGILQPTEKIYIKLVKAF-LEA---GKTKELTHFLIKAEKE-NLQVSH 486 (784)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~li~~~-~~~---g~~~~a~~~~~~m~~~-~~~~~p 486 (784)
.......+.++..+.... +.+++. +..-.|+....|-.|..= .++ .+-..|.+..-...+- .+.+.|
T Consensus 322 -i~d~ekmkeaf~kli~ip----~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~ 396 (840)
T KOG2003|consen 322 -IGDAEKMKEAFQKLIDIP----GEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAP 396 (840)
T ss_pred -cCcHHHHHHHHHHHhcCC----CCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Confidence 001112233333221100 000110 111235555555544321 111 1111122222111111 011233
Q ss_pred CHHH-------------HH--------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH------------
Q 003946 487 DDAA-------------LG--------HVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAY------------ 533 (784)
Q Consensus 487 ~~~~-------------~~--------~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~------------ 533 (784)
|-.. +. .-..-+.+.|+++.|.+++.-+.+..-+.-...-|.|-..+
T Consensus 397 ~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aq 476 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQ 476 (840)
T ss_pred chhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHH
Confidence 3210 00 01123567889999988888777653221111111111111
Q ss_pred ------------------------HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC
Q 003946 534 ------------------------IEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKI 589 (784)
Q Consensus 534 ------------------------~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 589 (784)
...|++++|.+.+++.+...-.-....||+=+ .+-..|++++|++.|-++.. +
T Consensus 477 qyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~--i 553 (840)
T KOG2003|consen 477 QYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHA--I 553 (840)
T ss_pred HHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHH--H
Confidence 13466777777777776432111112233222 23456778888887766543 3
Q ss_pred CCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003946 590 PRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFH 669 (784)
Q Consensus 590 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 669 (784)
..++......+...|.-..+...|.+++...... +..|.....-|.+.|-+.|+-..|.+..-+--.- ++-+..|..
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~ie 630 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIE 630 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHH
Confidence 3445666667777777777777777777666543 2235667788888888888888887776544332 333666766
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003946 670 SMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFV-RGGFFARANEVVAMMEEGKMFIDKYKYRTLFL 748 (784)
Q Consensus 670 ~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 748 (784)
-|...|.... -+++++.+|++..- +.|+..-|..||..|. +.|++++|.++++....+ ++-|..+...|+
T Consensus 631 wl~ayyidtq-f~ekai~y~ekaal------iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflv- 701 (840)
T KOG2003|consen 631 WLAAYYIDTQ-FSEKAINYFEKAAL------IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLV- 701 (840)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHHh------cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHH-
Confidence 6666777777 78888888887743 7789999988886654 668999999999888765 555555555444
Q ss_pred HHhcccccCCchh
Q 003946 749 KYHKTLYKGKTPK 761 (784)
Q Consensus 749 ~~~~~~~~~~a~~ 761 (784)
++.++.....+.+
T Consensus 702 ri~~dlgl~d~ke 714 (840)
T KOG2003|consen 702 RIAGDLGLKDAKE 714 (840)
T ss_pred HHhccccchhHHH
Confidence 4444444434444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.1e-10 Score=117.84 Aligned_cols=293 Identities=13% Similarity=0.054 Sum_probs=213.1
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCC
Q 003946 299 ERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNR 378 (784)
Q Consensus 299 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (784)
...|+++.|.+.+....+.. +.... .+-.....+.+.|+.+.|.+.|.+..+.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~-~~~~~---~~llaA~aa~~~g~~~~A~~~l~~a~~~----------------------- 147 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA-AEPVL---NLIKAAEAAQQRGDEARANQHLEEAAEL----------------------- 147 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC-CCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------
Confidence 45788888888887766642 32221 2445556677889999999999887652
Q ss_pred CCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCH--HHHHH
Q 003946 379 TPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTE--KIYIK 456 (784)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~ 456 (784)
.|+. ...-.
T Consensus 148 ---------------------------------------------------------------------~p~~~l~~~~~ 158 (409)
T TIGR00540 148 ---------------------------------------------------------------------AGNDNILVEIA 158 (409)
T ss_pred ---------------------------------------------------------------------CCcCchHHHHH
Confidence 2322 22333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH--
Q 003946 457 LVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVY-ASLLKAY-- 533 (784)
Q Consensus 457 li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~-- 533 (784)
....+...|++++|...++.+.+.. +-+..++..+...+.+.|+++.|.+++..+.+.++.+ ...+ ..-..++
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~---P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~ 234 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMA---PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIG 234 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHH
Confidence 4677888999999999999999887 5566778899999999999999999999999987543 3333 1111222
Q ss_pred -HHcCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHH--Hhc
Q 003946 534 -IEANRPREVTALLRDARSAGI---QLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC--AQN 607 (784)
Q Consensus 534 -~~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~--~~~ 607 (784)
...+..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. |++......++..+ ...
T Consensus 235 ~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 235 LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCC
Confidence 333333444445555554421 1378889999999999999999999999998865 44432211133333 345
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHH
Q 003946 608 HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTE 687 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~ 687 (784)
++.+.+.+.++...+..+-.|+.....++...+.+.|++++|.+.|+........||...+..+...+.+.| +.++|.+
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g-~~~~A~~ 391 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAG-DKAEAAA 391 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcC-CHHHHHH
Confidence 788899999998888765555435677899999999999999999995444335799999999999999999 9999999
Q ss_pred HHHHHHh
Q 003946 688 LWGEMKS 694 (784)
Q Consensus 688 ~~~~m~~ 694 (784)
+|++...
T Consensus 392 ~~~~~l~ 398 (409)
T TIGR00540 392 MRQDSLG 398 (409)
T ss_pred HHHHHHH
Confidence 9998644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.3e-10 Score=118.40 Aligned_cols=458 Identities=12% Similarity=0.073 Sum_probs=269.5
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhh
Q 003946 186 TILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLL 265 (784)
Q Consensus 186 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 265 (784)
.++..|...|+.|+.+||..+|..||.. |+.+.|- +|.-++| ...+-+...|+.++.+..+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~--------gdieaat-if~fm~~----------ksLpv~e~vf~~lv~sh~~ 71 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTK--------GDIEAAT-IFPFMEI----------KSLPVREGVFRGLVASHKE 71 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHccc--------CCCcccc-chhhhhc----------ccccccchhHHHHHhcccc
Confidence 4667788899999999999999999987 5666665 6762344 4567788899999999999
Q ss_pred cCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHH---HHHHHhh----cCCChhhHHHHHHHHHHHHHh
Q 003946 266 FETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKL---QRHIDEA----VNLSDIQFRQFYNCLLSCHLK 338 (784)
Q Consensus 266 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l---~~~~~~~----~~~~~~~~~~~~~~li~~~~~ 338 (784)
.++.+.+. .|...||..|..+|.+.||+..-..+ +..+... +..... .| .++..-|.
T Consensus 72 And~Enpk-----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e----~~-fl~k~~c~ 135 (1088)
T KOG4318|consen 72 ANDAENPK-----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPE----RW-FLMKIHCC 135 (1088)
T ss_pred cccccCCC-----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHH----HH-HHhhcccC
Confidence 99988776 68889999999999999997662222 2222211 111111 11 11111222
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHH
Q 003946 339 FGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVAL 418 (784)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (784)
-+....|........-+|. |..+++.... .|...|..-.. ...+.
T Consensus 136 p~~lpda~n~illlv~egl--waqllkll~~-------------------------~Pvsa~~~p~~--------vfLrq 180 (1088)
T KOG4318|consen 136 PHSLPDAENAILLLVLEGL--WAQLLKLLAK-------------------------VPVSAWNAPFQ--------VFLRQ 180 (1088)
T ss_pred cccchhHHHHHHHHHHHHH--HHHHHHHHhh-------------------------CCcccccchHH--------HHHHH
Confidence 2333444433333333332 2222221110 01111110000 00111
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 003946 419 EAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLC 498 (784)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~ 498 (784)
....+.-++.++.+.... . -.|++.+|..++.+-..+|+.+.|..++.+|++.| ++.+..-|..++-+
T Consensus 181 nv~~ntpvekLl~~cksl--------~-e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g--fpir~HyFwpLl~g- 248 (1088)
T KOG4318|consen 181 NVVDNTPVEKLLNMCKSL--------V-EAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG--FPIRAHYFWPLLLG- 248 (1088)
T ss_pred hccCCchHHHHHHHHHHh--------h-cCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC--CCcccccchhhhhc-
Confidence 111111122221111100 1 15899999999999999999999999999999999 45555556666655
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH-----------HHHHHHHH----------------
Q 003946 499 ISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVT-----------ALLRDARS---------------- 551 (784)
Q Consensus 499 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-----------~~~~~m~~---------------- 551 (784)
.++..-+..+..-|.+.|+.|+..|+...+..+.++|....+. .+...|..
T Consensus 249 --~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v 326 (1088)
T KOG4318|consen 249 --INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSV 326 (1088)
T ss_pred --CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 7889999999999999999999999988777666644322111 11111110
Q ss_pred ---------cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc--CCCCCcHHHHHHHHHHHHhcCc-----------
Q 003946 552 ---------AGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES--KIPRSGHQEFEMLVKGCAQNHE----------- 609 (784)
Q Consensus 552 ---------~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~~ll~~~~~~~~----------- 609 (784)
.|+......|...+. ....|..++..++-..|..- ...+.+...|..++.-|.+.-+
T Consensus 327 ~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~ 405 (1088)
T KOG4318|consen 327 IGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAG 405 (1088)
T ss_pred HHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 122222222322222 22346666666655555321 1223444455555544433221
Q ss_pred -----------HHHHHHHHHHHHh------------c---CCCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003946 610 -----------AGLMAKLLQEVKE------------G---QRIDC-------GVHDWNNVIHFFCKKRLMQDAEKALKRM 656 (784)
Q Consensus 610 -----------~~~a~~~~~~~~~------------~---~~~~p-------~~~~y~~li~~~~~~g~~~~A~~~~~~m 656 (784)
..+..++...... . ....| --..-+.++..++..-+..+++..-++.
T Consensus 406 qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky 485 (1088)
T KOG4318|consen 406 QGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY 485 (1088)
T ss_pred HHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111100 0 00011 0112356667777777777777665555
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 657 RSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 657 ~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
...-+ | ..|..||.-+..+. ..+.|..+.+++... +..+..|...+..+.+.+.+.+...++.+++.+|.+.
T Consensus 486 e~~lf-~--g~ya~Li~l~~~hd-kle~Al~~~~e~d~~--d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~ 557 (1088)
T KOG4318|consen 486 EDLLF-A--GLYALLIKLMDLHD-KLEYALSFVDEIDTR--DESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSS 557 (1088)
T ss_pred HHHHh-h--hHHHHHhhhHHHHH-HHHHHHhchhhhccc--chhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHH
Confidence 54311 2 66889999999999 999999999998763 2345667888999999999999999999999999874
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-12 Score=131.66 Aligned_cols=270 Identities=17% Similarity=0.174 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGH-VITLCISLGWLDQAHDLLDEMHLAGVRASSSVY 526 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 526 (784)
.|+...+ .+...+.+.|++++|++++.+..... .+|+...|-. +...+...++.+.|...++.+...+.. +...+
T Consensus 6 ~~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~--~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~ 81 (280)
T PF13429_consen 6 GPSEEAL-RLARLLYQRGDYEKALEVLKKAAQKI--APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccc-cccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 3443333 55778889999999999996644332 1344444444 445556789999999999999987643 56677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh
Q 003946 527 ASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ 606 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 606 (784)
..++.. ...+++++|..+++...+. .++...+..++..+...++++++.++++++....-.+++...|..+...+.+
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred cccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 777777 7899999999999887655 4677778889999999999999999999988655446778889999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHH
Q 003946 607 NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVT 686 (784)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~ 686 (784)
.|+.++|.+.++...+..+- |....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...| +.++|.
T Consensus 159 ~G~~~~A~~~~~~al~~~P~--~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg-~~~~Al 234 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPD--DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLG-RYEEAL 234 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT--HHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccc-cccccc
Confidence 99999999999999986532 46678899999999999999999998887763 446667888999999999 999999
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 687 ELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 687 ~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
..+++..+. .+.|+.....+.+++...|+.++|.++.++...
T Consensus 235 ~~~~~~~~~-----~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 235 EYLEKALKL-----NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHH-----STT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccc-----ccccccccccccccccccccccccccccccccc
Confidence 999998773 233888899999999999999999999887653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.4e-08 Score=99.30 Aligned_cols=500 Identities=14% Similarity=0.077 Sum_probs=285.0
Q ss_pred ccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhccccc
Q 003946 83 ILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQIL 162 (784)
Q Consensus 83 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 162 (784)
+...|.++..|-..+ .....+.|.-++.+..+. .|.. .-|.-++++...++..++ ++....+. .+
T Consensus 373 Le~iP~sv~LWKaAV----elE~~~darilL~rAvec--cp~s---~dLwlAlarLetYenAkk---vLNkaRe~---ip 437 (913)
T KOG0495|consen 373 LEHIPRSVRLWKAAV----ELEEPEDARILLERAVEC--CPQS---MDLWLALARLETYENAKK---VLNKAREI---IP 437 (913)
T ss_pred HHhCCchHHHHHHHH----hccChHHHHHHHHHHHHh--ccch---HHHHHHHHHHHHHHHHHH---HHHHHHhh---CC
Confidence 344456666676544 567777799999888773 2432 345666666444445444 44444443 34
Q ss_pred CccchHHHHHHHHhhCCCCccHHHHHHH----HhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCc
Q 003946 163 LEKEPLIYLSLGLSKCGLPVPASTILRK----LVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDP 238 (784)
Q Consensus 163 ~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~ 238 (784)
.++.++......--..|.++...+++++ +...|+..+...|-.=--.+-+.| .+--...+.. ....
T Consensus 438 td~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag--------sv~TcQAIi~--avig 507 (913)
T KOG0495|consen 438 TDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG--------SVITCQAIIR--AVIG 507 (913)
T ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC--------ChhhHHHHHH--HHHh
Confidence 5888888877777788899998888876 344577777766654444443331 1111111111 1100
Q ss_pred cccccccccCC--CCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 239 RKKCNAPLIAM--KPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDE 316 (784)
Q Consensus 239 ~~~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 316 (784)
.|+ .--..||+.--..|.+.+.++-|..+|...++- ++-+...|......--..|..++...+|++...
T Consensus 508 --------igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~ 578 (913)
T KOG0495|consen 508 --------IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE 578 (913)
T ss_pred --------hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 111 223458999999999999999999999998874 344667888887777788999999999999888
Q ss_pred hcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccc
Q 003946 317 AVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENS 396 (784)
Q Consensus 317 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (784)
..+.... .|-....-+-..|+...|..++.+..+... ..
T Consensus 579 ~~pkae~----lwlM~ake~w~agdv~~ar~il~~af~~~p-------------------------------------ns 617 (913)
T KOG0495|consen 579 QCPKAEI----LWLMYAKEKWKAGDVPAARVILDQAFEANP-------------------------------------NS 617 (913)
T ss_pred hCCcchh----HHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-------------------------------------Cc
Confidence 6554443 588888888889999999999988777431 01
Q ss_pred ccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003946 397 GIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIK 476 (784)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 476 (784)
..+|-..+....- ......++.++.... ...|+...|.--+...-..+..++|.+++++
T Consensus 618 eeiwlaavKle~e------n~e~eraR~llakar---------------~~sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 618 EEIWLAAVKLEFE------NDELERARDLLAKAR---------------SISGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred HHHHHHHHHHhhc------cccHHHHHHHHHHHh---------------ccCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 1111111110000 000111222222111 1345555555555555555666666666666
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003946 477 AEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQL 556 (784)
Q Consensus 477 m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 556 (784)
..+.- +--...|..+...+-+.++++.|++.|..=.+. ++-.+..|-.|...=-+.|.+-.|..++++-+-++ ..
T Consensus 677 ~lk~f---p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk 751 (913)
T KOG0495|consen 677 ALKSF---PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PK 751 (913)
T ss_pred HHHhC---CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CC
Confidence 55543 222234444445555566666666655543332 22234555555555555666666666666665443 23
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 003946 557 DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNV 636 (784)
Q Consensus 557 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~l 636 (784)
|...|...|..=.+.|+.+.|..+..+..+.- |.+...|..-|....+.++-..... .+++ ...|....-.+
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWaEaI~le~~~~rkTks~D---ALkk---ce~dphVllai 823 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWAEAIWLEPRPQRKTKSID---ALKK---CEHDPHVLLAI 823 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHHHHHHhccCcccchHHHH---HHHh---ccCCchhHHHH
Confidence 55566666666666666666666655554432 4444455555555544444222222 2222 11244444555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 637 IHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 637 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
...+-...++++|.+.|.+..+. .| +..+|.-+..-+..+| .-++-.+++.....
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG-~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHG-TEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhC-CHHHHHHHHHHHhc
Confidence 55555555666666666666654 23 2455555566666666 55555555555443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-09 Score=114.36 Aligned_cols=259 Identities=11% Similarity=0.047 Sum_probs=203.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALG--HVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLK 531 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 531 (784)
|-....+..+.|+++.|.+.+.++.+.. |+...+. .....+...|+++.|...++.+.+.. +-+......+..
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~----~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~ 195 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELA----DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQ 195 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3333455589999999999999998654 5543332 33567888999999999999999876 447888999999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHH
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDA-------SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC 604 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~ 604 (784)
.|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+.- |+++.....+...+
T Consensus 196 ~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~--~~~~~~~~~~A~~l 273 (398)
T PRK10747 196 AYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT--RHQVALQVAMAEHL 273 (398)
T ss_pred HHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH--hCCHHHHHHHHHHH
Confidence 999999999999999999987654322 234444544445556667777777765432 56778899999999
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHH
Q 003946 605 AQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYT 683 (784)
Q Consensus 605 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~ 683 (784)
...|+.+.|.++++...+.. |+.. -.++.+....++.+++++..++..+. .|+ ...+..+...|...+ +++
T Consensus 274 ~~~g~~~~A~~~L~~~l~~~---~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~-~~~ 345 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKRQ---YDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHG-EWQ 345 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC---CCHH--HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCC-CHH
Confidence 99999999999999888743 3441 22344445669999999999999975 564 556778888999999 999
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 684 EVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 684 ~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
+|.+.|+...+ ..|+...|..|...+.+.|+.++|.+++++-..
T Consensus 346 ~A~~~le~al~------~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 346 EASLAFRAALK------QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999987 579999999999999999999999999987754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-12 Score=129.72 Aligned_cols=186 Identities=17% Similarity=0.113 Sum_probs=63.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChH
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAG-VRASSSVYASLLKAYIEANRPR 540 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~ 540 (784)
...+++++|.+++....+.. ++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERD----GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred cccccccccccccccccccc----cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 34455555555544433221 223334444444455555555555555544321 2234444555555555555555
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003946 541 EVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQE 619 (784)
Q Consensus 541 ~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 619 (784)
+|...+++..+. .| |....+.++..+...|+.+++.++++...+.. |+++..+..+..+|...|+.++|...|+.
T Consensus 164 ~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 164 KALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccc
Confidence 555555555443 23 23444445555555555555444444444432 23333444555555555555555555555
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 620 VKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 620 ~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 657 (784)
.....+ .|......+.+++...|+.++|.++..+..
T Consensus 240 ~~~~~p--~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 240 ALKLNP--DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHST--T-HHHHHHHHHHHT----------------
T ss_pred cccccc--cccccccccccccccccccccccccccccc
Confidence 544322 144445566666666666666666655443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-08 Score=106.31 Aligned_cols=370 Identities=12% Similarity=0.107 Sum_probs=269.3
Q ss_pred HHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcC
Q 003946 261 AGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFG 340 (784)
Q Consensus 261 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 340 (784)
..+++ |+.++|..++.+.++.. +.+...|-+|...|-..|+.+++...+-.....++.+. . .|-.+-....+.|
T Consensus 148 ~lfar-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~-e---~W~~ladls~~~~ 221 (895)
T KOG2076|consen 148 NLFAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY-E---LWKRLADLSEQLG 221 (895)
T ss_pred HHHHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh-H---HHHHHHHHHHhcc
Confidence 34445 99999999999999875 55778999999999999999999887766555444444 3 5999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHH
Q 003946 341 DLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEA 420 (784)
Q Consensus 341 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (784)
.+++|.-.|.+..+.+
T Consensus 222 ~i~qA~~cy~rAI~~~---------------------------------------------------------------- 237 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN---------------------------------------------------------------- 237 (895)
T ss_pred cHHHHHHHHHHHHhcC----------------------------------------------------------------
Confidence 9999999999888742
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHH----HHHHH
Q 003946 421 EVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAAL----GHVIT 496 (784)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~----~~li~ 496 (784)
+++...+--=+..|-+.|+...|...|.++....+ +.|..-+ -.++.
T Consensus 238 ---------------------------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 238 ---------------------------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--PVDIERIEDLIRRVAH 288 (895)
T ss_pred ---------------------------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--chhHHHHHHHHHHHHH
Confidence 23444444456678899999999999999987752 2222222 23456
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH--------------
Q 003946 497 LCISLGWLDQAHDLLDEMHLAG-VRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY-------------- 561 (784)
Q Consensus 497 ~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------------- 561 (784)
.+...++-+.|.+.++.....+ -..+...++.++..|.+...++.|......+......+|..-|
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~ 368 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC 368 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence 6677777788888888777532 2345677888999999999999999988888763333333222
Q ss_pred --------H----HHHHHHHHcCChhHHHHHHHHhHhcCCC-CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Q 003946 562 --------E----ALLQSKIVQKDTPGALHLFKEMKESKIP-RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC 628 (784)
Q Consensus 562 --------~----~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p 628 (784)
. -++-++......+....+.....+.+.. .+....|.-+..++...|++.+|..+|..+....+. -
T Consensus 369 ~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~-~ 447 (895)
T KOG2076|consen 369 EVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY-Q 447 (895)
T ss_pred cCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc-c
Confidence 1 1222333334444444444444554432 344557888899999999999999999999976643 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc----cCCCCCC
Q 003946 629 GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFA----SSTSMNF 703 (784)
Q Consensus 629 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~----~~~~~~p 703 (784)
+...|--+..+|-..|..++|.+.++..+.. .|+ ...-..|-..+...| +.++|.+.++.+..-. +.....|
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g-~~EkalEtL~~~~~~D~~~~e~~a~~~ 524 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLG-NHEKALETLEQIINPDGRNAEACAWEP 524 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcC-CHHHHHHHHhcccCCCccchhhccccH
Confidence 4778999999999999999999999999984 565 334445566677788 9999999999865321 1134566
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 704 DEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 704 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
+...--...+.|...|+.++=..+...|..
T Consensus 525 e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 525 ERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 677777788889999998887766666654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-08 Score=106.92 Aligned_cols=329 Identities=15% Similarity=0.135 Sum_probs=244.9
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCC
Q 003946 298 YERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNN 377 (784)
Q Consensus 298 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (784)
..-.|++++|.+++.++.+.++....+ |-+|-..|-..|+.+++...+-..-.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~a----y~tL~~IyEqrGd~eK~l~~~llAAH----------------------- 201 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIA----YYTLGEIYEQRGDIEKALNFWLLAAH----------------------- 201 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhh----HHHHHHHHHHcccHHHHHHHHHHHHh-----------------------
Confidence 333499999999999999988777775 99999999999999999876532211
Q ss_pred CCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHH
Q 003946 378 RTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIK 456 (784)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~ 456 (784)
+.| |...|-.
T Consensus 202 ---------------------------------------------------------------------L~p~d~e~W~~ 212 (895)
T KOG2076|consen 202 ---------------------------------------------------------------------LNPKDYELWKR 212 (895)
T ss_pred ---------------------------------------------------------------------cCCCChHHHHH
Confidence 234 7789999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHH
Q 003946 457 LVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSS----VYASLLKA 532 (784)
Q Consensus 457 li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~ 532 (784)
+-....+.|.+++|.-.|.+..+.. +++...+---...|-+.|+...|..-|.++.+...+.|.. ..-..+..
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~---p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQAN---PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999887 5665555556778889999999999999999875322322 22345666
Q ss_pred HHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcH-----------------
Q 003946 533 YIEANRPREVTALLRDARSA-GIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGH----------------- 594 (784)
Q Consensus 533 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----------------- 594 (784)
|-..++.+.|.+.++..... +-..+...++.++..|.+...++.|......+......+++.
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 77778889999988887652 223455678889999999999999998888777621111110
Q ss_pred ----HHH----HHHHHHHHhcCcHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003946 595 ----QEF----EMLVKGCAQNHEAGLMAKLLQEVKEGQR-IDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA 665 (784)
Q Consensus 595 ----~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 665 (784)
..| .-+.-++.+....+....+.......+- +.-+...|.-+..+|...|++.+|+.+|..+......-+.
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 011 1122233444444444445444444331 2224567889999999999999999999999987544567
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 666 QTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DEELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 666 ~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
..|.-+...|...| .+++|.+.++++... .| +...-.+|...|-+.|+.++|.+.+..|.
T Consensus 450 ~vw~~~a~c~~~l~-e~e~A~e~y~kvl~~------~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 450 FVWYKLARCYMELG-EYEEAIEFYEKVLIL------APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhhHHHHHHHHHHh-hHHHHHHHHHHHHhc------CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 78888999999999 999999999999873 23 34455677888999999999999999975
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-09 Score=114.44 Aligned_cols=271 Identities=10% Similarity=-0.001 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLD-EMHLAGVRASSSVYASLL 530 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~~~~~~~~~li 530 (784)
....-+..+|-..+++++|.++|+.+.+..+-..-+..+|.+.+..+-+. -+...+. ++.+. -+-.+.+|-++-
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~Laq~Li~~-~~~sPesWca~G 428 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLAQDLIDT-DPNSPESWCALG 428 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHHHHHHhh-CCCCcHHHHHhc
Confidence 55667888999999999999999999887643445677898888765432 2222222 22222 133679999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 531 KAYIEANRPREVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
++|+-+++.+.|++.|++..+. .| ...+|+.+-.-+.....+|.|...|+...... |..-.+|.-+...|.+.++
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~--~rhYnAwYGlG~vy~Kqek 504 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD--PRHYNAWYGLGTVYLKQEK 504 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC--chhhHHHHhhhhheeccch
Confidence 9999999999999999999875 45 67888888888888899999999999877543 5556677788899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Q 003946 610 AGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELW 689 (784)
Q Consensus 610 ~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~ 689 (784)
++.|+-.|++..+-++ .+.+....+...+-+.|+.|+|++++++.....-+ |+.+----...+...+ ++++|...+
T Consensus 505 ~e~Ae~~fqkA~~INP--~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~-~~~eal~~L 580 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINP--SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLG-RYVEALQEL 580 (638)
T ss_pred hhHHHHHHHhhhcCCc--cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhc-chHHHHHHH
Confidence 9999999999998653 26677788888899999999999999999875322 3333333455666678 999999999
Q ss_pred HHHHhcccCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003946 690 GEMKSFASSTSMNF-DEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKY 741 (784)
Q Consensus 690 ~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 741 (784)
+++++ +.| +...|..+...|.+.|+.+.|+.-|.-|.+..-+++..
T Consensus 581 EeLk~------~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 581 EELKE------LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred HHHHH------hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 99998 334 56678899999999999999999999998765444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.8e-08 Score=97.58 Aligned_cols=398 Identities=14% Similarity=0.053 Sum_probs=254.6
Q ss_pred HHHHHHHhhhcCChhHHHHHHHhhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 003946 256 FNIALAGCLLFETTRKAEQLLDIMPRIGVKAD-SNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLS 334 (784)
Q Consensus 256 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~ 334 (784)
+-+.-.-|.+.|.+++|++.|.+.++. .|| +.-|.....+|...|+++...+--....+.++.... .+..-..
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~K----Al~RRA~ 191 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVK----ALLRRAS 191 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHH----HHHHHHH
Confidence 334445677899999999999999884 588 778888989999999999988877666664333322 4666667
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhh
Q 003946 335 CHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRK 414 (784)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (784)
++-+.|++++|+.-+.-..-.+-+.-+++
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~--------------------------------------------------- 220 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASI--------------------------------------------------- 220 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchh---------------------------------------------------
Confidence 77788888877654322221110000000
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHH-----------------------HHHHHHHHHHH--cC---C
Q 003946 415 FVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEK-----------------------IYIKLVKAFLE--AG---K 466 (784)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----------------------~~~~li~~~~~--~g---~ 466 (784)
..-++..+.... +......+...+..+-|+.. +...+..++.. .+ .
T Consensus 221 ----~~~~eR~Lkk~a--~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~ 294 (606)
T KOG0547|consen 221 ----EPMAERVLKKQA--MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEG 294 (606)
T ss_pred ----HHHHHHHHHHHH--HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchh
Confidence 000000000000 00000000000111122222 22222222211 11 2
Q ss_pred hHHHHHHHHHHHHcCCCCCCC-----H------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003946 467 TKELTHFLIKAEKENLQVSHD-----D------AALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE 535 (784)
Q Consensus 467 ~~~a~~~~~~m~~~~~~~~p~-----~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 535 (784)
+.+|...+.+-..... ..++ . .+......-+.-.|+...|.+-|+..++....++. .|--+..+|..
T Consensus 295 Y~~a~~~~te~~~~~~-~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d 372 (606)
T KOG0547|consen 295 YLKAYDKATEECLGSE-SSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYAD 372 (606)
T ss_pred HHHHHHHHHHHhhhhh-hhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhh
Confidence 3334333333211100 1111 1 11111222334578899999999999987644333 36677788999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHH
Q 003946 536 ANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAK 615 (784)
Q Consensus 536 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 615 (784)
..+.++....|++..+.+. -|..+|-.=-..+.-.+++++|+.=|++.+... |.+...|.-+.-+..+.+++++++.
T Consensus 373 ~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~ 449 (606)
T KOG0547|consen 373 ENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMK 449 (606)
T ss_pred hhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887652 355666666666777788999999999998865 8888888888888899999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HHHH--HHHHHHHHHcCCCHHHHH
Q 003946 616 LLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-------AQTF--HSMVTGYAAIGGKYTEVT 686 (784)
Q Consensus 616 ~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~--~~ll~a~~~~g~~~~~a~ 686 (784)
.|++.+.+.+.- ...||-....+...+++++|.+.|+..++. .|+ ..++ -.++. +.-.+ +++.|.
T Consensus 450 ~Fee~kkkFP~~--~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~-~qwk~-d~~~a~ 523 (606)
T KOG0547|consen 450 TFEEAKKKFPNC--PEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV-LQWKE-DINQAE 523 (606)
T ss_pred HHHHHHHhCCCC--chHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhh-hchhh-hHHHHH
Confidence 999999987543 456888889999999999999999998874 444 1121 12221 11236 999999
Q ss_pred HHHHHHHhcccCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 687 ELWGEMKSFASSTSMNFDE-ELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 687 ~~~~~m~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
.++++..+ +.|.. ..|..|...-...|+.++|.++|++-..
T Consensus 524 ~Ll~KA~e------~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 524 NLLRKAIE------LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHc------cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999987 44443 4599999999999999999999998764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-08 Score=98.38 Aligned_cols=287 Identities=13% Similarity=0.101 Sum_probs=209.3
Q ss_pred cCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHH
Q 003946 266 FETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSA 345 (784)
Q Consensus 266 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 345 (784)
.|++..|.++...-.+.+-.| ...|..-..+--+.|+.+.+-+.+.+..+....+... ++-+........|+.+.|
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~---v~ltrarlll~~~d~~aA 172 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLA---VELTRARLLLNRRDYPAA 172 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHH---HHHHHHHHHHhCCCchhH
Confidence 699999999999877776332 2456666777888999999999999988863333222 688888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHH
Q 003946 346 SKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRV 425 (784)
Q Consensus 346 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (784)
..-+++..+.+
T Consensus 173 ~~~v~~ll~~~--------------------------------------------------------------------- 183 (400)
T COG3071 173 RENVDQLLEMT--------------------------------------------------------------------- 183 (400)
T ss_pred HHHHHHHHHhC---------------------------------------------------------------------
Confidence 98888877632
Q ss_pred HHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCH-------HHHHHHHHHH
Q 003946 426 LQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDD-------AALGHVITLC 498 (784)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~-------~~~~~li~~~ 498 (784)
+.++........+|.+.|++.+...++.+|.+.+ +..|. .+|+.++.-.
T Consensus 184 ----------------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 184 ----------------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--LLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred ----------------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--CCChHHHHHHHHHHHHHHHHHH
Confidence 3356788889999999999999999999999988 44443 3466666655
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 003946 499 ISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGAL 578 (784)
Q Consensus 499 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 578 (784)
...+..+.-...++...+. .+-++..-.+++.-+.++|+.++|.++.++..+++..|. -...-.+.+-++.+.-+
T Consensus 240 ~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~ 314 (400)
T COG3071 240 RDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLI 314 (400)
T ss_pred hccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHH
Confidence 5555555544555555443 344677777888889999999999999999988876665 22223344556666666
Q ss_pred HHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 579 HLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 579 ~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
+..++-.+.. |.++-.+.+|...|.+.+.+.+|...|+.... ..|+..+|+-+.++|.+.|+.++|.+.+++-..
T Consensus 315 k~~e~~l~~h--~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 315 KAAEKWLKQH--PEDPLLLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHhC--CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6666555443 55556777888888888888888888876665 446777888888888888888888887777664
Q ss_pred C
Q 003946 659 L 659 (784)
Q Consensus 659 ~ 659 (784)
.
T Consensus 390 ~ 390 (400)
T COG3071 390 L 390 (400)
T ss_pred H
Confidence 3
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-09 Score=113.90 Aligned_cols=199 Identities=11% Similarity=-0.027 Sum_probs=139.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
+-.+.+|-++-++|.-+++.+.|++.|++..+.+ +-...+|+.+..=+....++|.|...|+..+.. |...||
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld---p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYn 490 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD---PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYN 490 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC---CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhH
Confidence 3356788888888888888888888888887765 447777887777777888888888888776654 555555
Q ss_pred H---HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHH
Q 003946 528 S---LLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC 604 (784)
Q Consensus 528 ~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~ 604 (784)
+ |.-.|.|.++++.|+-.|++..+.+ ..+.+....+...+.+.|+.++|++++++..... |.++-.---....+
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNPLCKYHRASIL 567 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCchhHHHHHHHH
Confidence 4 5566888888888888888887664 2356666677777778888888888888877655 44443434444455
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 605 AQNHEAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 605 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
...+++++|...++++++ +.|+ ...|-.+...|.+.|+.+.|+.-|.-+.+.
T Consensus 568 ~~~~~~~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HhhcchHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 556666666666666666 3343 445666666666666666666666666654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.4e-12 Score=89.86 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=48.8
Q ss_pred CchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHh
Q 003946 251 PNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYER 300 (784)
Q Consensus 251 p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 300 (784)
||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+++|++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.9e-12 Score=88.25 Aligned_cols=50 Identities=26% Similarity=0.489 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003946 628 CGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA 677 (784)
Q Consensus 628 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 677 (784)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+++|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.1e-07 Score=91.97 Aligned_cols=435 Identities=10% Similarity=0.063 Sum_probs=286.8
Q ss_pred HHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCCh-hHHHHHHHHHHh
Q 003946 222 ELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADS-NLLIIMAHIYER 300 (784)
Q Consensus 222 ~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~li~~~~~ 300 (784)
+.+..|..+|+ +.. ++-..+...|---+..-.++..+..|..+++..+.. -|-+ ..|--.+.+=-.
T Consensus 87 ~e~~RARSv~E--RAL---------dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 87 KEIQRARSVFE--RAL---------DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHH--HHH---------hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHH
Confidence 56666777777 432 333566667777777788888899999999888764 2332 444445555667
Q ss_pred cCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCC
Q 003946 301 NGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTP 380 (784)
Q Consensus 301 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (784)
.|++..|.++|+.-..- .|+.. .|++.|..=.+-..++.|..++++..--.
T Consensus 154 LgNi~gaRqiferW~~w-~P~eq----aW~sfI~fElRykeieraR~IYerfV~~H------------------------ 204 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW-EPDEQ----AWLSFIKFELRYKEIERARSIYERFVLVH------------------------ 204 (677)
T ss_pred hcccHHHHHHHHHHHcC-CCcHH----HHHHHHHHHHHhhHHHHHHHHHHHHheec------------------------
Confidence 78999999999887774 44444 49999998888889999999988776411
Q ss_pred CCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHH
Q 003946 381 SEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKA 460 (784)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 460 (784)
|..+ .-+.++.+...+. ....++.+...+..... .-.-+...+++...-
T Consensus 205 ---------------P~v~--~wikyarFE~k~g---~~~~aR~VyerAie~~~-----------~d~~~e~lfvaFA~f 253 (677)
T KOG1915|consen 205 ---------------PKVS--NWIKYARFEEKHG---NVALARSVYERAIEFLG-----------DDEEAEILFVAFAEF 253 (677)
T ss_pred ---------------ccHH--HHHHHHHHHHhcC---cHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHH
Confidence 0000 0011222110000 11112222222211110 001233344444444
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHcCCCCCHHHHHHHH
Q 003946 461 FLEAGKTKELTHFLIKAEKENLQVSHD--DAALGHVITLCISLGWLDQAHDL--------LDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 461 ~~~~g~~~~a~~~~~~m~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~--------~~~m~~~g~~~~~~~~~~li 530 (784)
=.++..++.|.-+|.-....- +.+ ...|......=-+-|+....... |+.+.+.+ +-|-.+|--.+
T Consensus 254 Ee~qkE~ERar~iykyAld~~---pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdyl 329 (677)
T KOG1915|consen 254 EERQKEYERARFIYKYALDHI---PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYL 329 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHH
Confidence 456667777777777766542 333 34455444444455654433222 34444433 34677888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HHcCChhHHHHHHHHhHhcCCCCCcHHHHHHH
Q 003946 531 KAYIEANRPREVTALLRDARSAGIQLDA-------SCYEALLQSK---IVQKDTPGALHLFKEMKESKIPRSGHQEFEML 600 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 600 (784)
..-...|+.+...++|++.... ++|-. ..|.-+=.++ ....|.+.+.++++...+ +.|....||.-+
T Consensus 330 rL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKi 406 (677)
T KOG1915|consen 330 RLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKI 406 (677)
T ss_pred HHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHH
Confidence 8888889999999999998765 34422 1222222222 256789999999999887 457777787766
Q ss_pred HHHHH----hcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 003946 601 VKGCA----QNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGY 675 (784)
Q Consensus 601 l~~~~----~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~ 675 (784)
--.|+ +..++..|.+++...... -|-..+|...|..-.+.+++|.+.+++++.++- .| |..+|.-...-=
T Consensus 407 WlmyA~feIRq~~l~~ARkiLG~AIG~---cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 407 WLMYAQFEIRQLNLTGARKILGNAIGK---CPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhcc---CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHH
Confidence 65555 467899999999888764 477788999999999999999999999999985 46 677887776666
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 676 AAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 676 ~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
...| +.|.|..+|+-..+. ..+......|-+.|+.=...|.+++|..+++++.++ .+...+|-++-
T Consensus 482 ~~Lg-dtdRaRaifelAi~q---p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 482 TSLG-DTDRARAIFELAISQ---PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFA 547 (677)
T ss_pred HHhh-hHHHHHHHHHHHhcC---cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHH
Confidence 6778 999999999998873 334444567888888888999999999999999986 45555777766
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-08 Score=93.28 Aligned_cols=291 Identities=11% Similarity=0.080 Sum_probs=192.3
Q ss_pred cCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHH
Q 003946 266 FETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSA 345 (784)
Q Consensus 266 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 345 (784)
..+.++|..+|-+|.+.. +-+..+-.+|.+.|-+.|.+|.|.+++..+.++.......-....-.|-.-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 578999999999999843 2344667789999999999999999999998863333332223456677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHH
Q 003946 346 SKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRV 425 (784)
Q Consensus 346 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (784)
.++|..+.+.+.
T Consensus 127 E~~f~~L~de~e-------------------------------------------------------------------- 138 (389)
T COG2956 127 EDIFNQLVDEGE-------------------------------------------------------------------- 138 (389)
T ss_pred HHHHHHHhcchh--------------------------------------------------------------------
Confidence 999999887553
Q ss_pred HHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHH----HHHHHHHHHHHc
Q 003946 426 LQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDA----ALGHVITLCISL 501 (784)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~----~~~~li~~~~~~ 501 (784)
+. .....-|+..|-...++++|+++-+++.+.++ .+..+ -|.-+-..+...
T Consensus 139 ---------------------fa--~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~--q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 139 ---------------------FA--EGALQQLLNIYQATREWEKAIDVAERLVKLGG--QTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred ---------------------hh--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC--ccchhHHHHHHHHHHHHHhhh
Confidence 01 12455688889999999999999998887662 22221 123333344445
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 003946 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLF 581 (784)
Q Consensus 502 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 581 (784)
.+++.|..++....+.+- -++..--.+-+.+...|++..|.+.++...+.+..--..+...|..+|.+.|+.++....+
T Consensus 194 ~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 778888888888877642 2445555666778888999999999998887754434456778888888888888888888
Q ss_pred HHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 003946 582 KEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCK---KRLMQDAEKALKRMR 657 (784)
Q Consensus 582 ~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~---~g~~~~A~~~~~~m~ 657 (784)
..+.+....+ ..-.++..........+.|...+..-..+ +|+...+..+|+.-.. .|+..+.+.++..|.
T Consensus 273 ~~~~~~~~g~---~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 273 RRAMETNTGA---DAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHccCCc---cHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 8877754222 22333333333333344444444333332 2455555555554322 223334444444444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-07 Score=89.90 Aligned_cols=286 Identities=11% Similarity=0.064 Sum_probs=205.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCCHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLD-QAHDLLDEMHLAGVRASSSVY 526 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~g~~~~~~~~ 526 (784)
.-+...-+....+.-...++++|+.+|+++.+.++--.-|..+|..++-.--....+. .|..++ .+ ..+ -+.|.
T Consensus 259 ~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~i--dKy--R~ETC 333 (559)
T KOG1155|consen 259 PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NI--DKY--RPETC 333 (559)
T ss_pred CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hh--ccC--Cccce
Confidence 3344433444445557789999999999999886422346677887774432221211 122221 11 112 34677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh
Q 003946 527 ASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ 606 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 606 (784)
.++.+-|+-.++.++|...|++..+.+ +.....|+.|-.-|....+...|++-++...+-+ |.+...|-.|.++|.-
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--PRDYRAWYGLGQAYEI 410 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--chhHHHHhhhhHHHHH
Confidence 788889999999999999999998764 2355778999999999999999999999998865 8889999999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHH
Q 003946 607 NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVT 686 (784)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~ 686 (784)
.+-..-|+-+|++..+-.+ -|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...|-+.+ +.++|.
T Consensus 411 m~Mh~YaLyYfqkA~~~kP--nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~-d~~eAa 486 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKP--NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELK-DLNEAA 486 (559)
T ss_pred hcchHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHH-hHHHHH
Confidence 9999999999999988543 378889999999999999999999999999875 235688899999999999 999999
Q ss_pred HHHHHHHhcccCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 687 ELWGEMKSFASSTSMNFD--EELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 687 ~~~~~m~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
..+++-.+.....|...+ ...-.-|..-+.+.+++++|.........- .+...--+.|+
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~Ll 547 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALL 547 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 999876653222233222 122223556677888888887765554432 34444444444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.3e-08 Score=95.95 Aligned_cols=287 Identities=10% Similarity=0.022 Sum_probs=224.6
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHH
Q 003946 463 EAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREV 542 (784)
Q Consensus 463 ~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 542 (784)
..|++.+|.++..+-.+.+ .--...|..-..+.-+.|+.+.+-.++.+..+..-.++....-+........|++..|
T Consensus 96 ~eG~~~qAEkl~~rnae~~---e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG---EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC---cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 4589999999999987776 2333446666677778999999999999999875567788888888899999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcH------HHHHHHHHHHHhcCcHHHHHHH
Q 003946 543 TALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGH------QEFEMLVKGCAQNHEAGLMAKL 616 (784)
Q Consensus 543 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~ 616 (784)
..-++++.+.+. .+.........+|.+.|++.+...++.+|.+.+...+.. .+|..++.-+...+..+.-...
T Consensus 173 ~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 173 RENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 999999988763 467788999999999999999999999999988754332 4577777777777777776777
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 003946 617 LQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFA 696 (784)
Q Consensus 617 ~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~ 696 (784)
++.....-.-. ...-.+++.-+.++|+.++|.++.++..+++..|.. ..+-.+.+.+ +.+.-.+..++-.+.
T Consensus 252 W~~~pr~lr~~--p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~-d~~~l~k~~e~~l~~- 323 (400)
T COG3071 252 WKNQPRKLRND--PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPG-DPEPLIKAAEKWLKQ- 323 (400)
T ss_pred HHhccHHhhcC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCC-CchHHHHHHHHHHHh-
Confidence 77777664433 444678888899999999999999999998777762 2233566666 777777777665542
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcccccCCchhhHHHHH
Q 003946 697 SSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKTLYKGKTPKFQTEAQ 767 (784)
Q Consensus 697 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~~~~~~a~~~~~~~~ 767 (784)
.+-++..+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|+.+-..+-+-++..+|.+...+..
T Consensus 324 ----h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 324 ----HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred ----CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 233558899999999999999999999997776 58999999999888777777666665555433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.8e-09 Score=102.04 Aligned_cols=201 Identities=15% Similarity=0.047 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVK 602 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~ 602 (784)
...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. |.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Confidence 4556666667777777777777777765542 2235566666667777777777777777766644 445556666677
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCH
Q 003946 603 GCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKY 682 (784)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~ 682 (784)
.+...|++++|.+.++..............+..+...|...|++++|.+.+++..+.. +.+...+..+...+...| ++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~-~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG-QY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC-CH
Confidence 7777777777777777766532222234456677778888888888888888887652 224566777777888888 88
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 683 TEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 683 ~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-----YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888887762 234566677777888888888888888777764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.2e-06 Score=85.59 Aligned_cols=470 Identities=12% Similarity=0.072 Sum_probs=265.0
Q ss_pred cchHHHHHHHHhhCCCCccHHHHHHHHhhc-CCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccc
Q 003946 165 KEPLIYLSLGLSKCGLPVPASTILRKLVAT-EQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCN 243 (784)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~ 243 (784)
|..+..-+....+.|++...+..|++.+.. .+......|...|.-.-.. +.++-+..++. +.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~--------~lPets~rvyr--RY------- 164 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH--------GLPETSIRVYR--RY------- 164 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC--------CChHHHHHHHH--HH-------
Confidence 556666677778899999999999987654 3344455788777655444 66677777777 55
Q ss_pred ccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCC------CCCChhHHHHHHHHHHhcCCHHHH---HHHHHHH
Q 003946 244 APLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIG------VKADSNLLIIMAHIYERNGRREEL---RKLQRHI 314 (784)
Q Consensus 244 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~~~~~li~~~~~~g~~~~A---~~l~~~~ 314 (784)
-.+.|. .-+--|.-++..++.++|-+.+....... .+.+...|.-+-+..++.-+.-.. ..+++.+
T Consensus 165 ---Lk~~P~--~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g 239 (835)
T KOG2047|consen 165 ---LKVAPE--AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG 239 (835)
T ss_pred ---HhcCHH--HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh
Confidence 223443 36777888899999999999988876332 234556677776666666544332 2344444
Q ss_pred HhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH--HHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcc
Q 003946 315 DEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRA--KEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVD 392 (784)
Q Consensus 315 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (784)
..+ .++. ....|++|.+-|.+.|.+++|.++|++-.+.- +-.++.+.++|.+|+........-. .+..
T Consensus 240 i~r-ftDq--~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~------a~~~- 309 (835)
T KOG2047|consen 240 IRR-FTDQ--LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMEL------ADEE- 309 (835)
T ss_pred ccc-CcHH--HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhh------hhhc-
Confidence 433 2222 22479999999999999999999999877642 1235677777777765321111000 0000
Q ss_pred ccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhc-CCcCCCHHHHHHHHHHHHHcCChHHHH
Q 003946 393 LENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEH-GILQPTEKIYIKLVKAFLEAGKTKELT 471 (784)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~a~ 471 (784)
. .......+.+-.+......+..+........ ..-..++..|..-+.. ..|+..+..
T Consensus 310 ----------------~----~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i 367 (835)
T KOG2047|consen 310 ----------------S----GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQI 367 (835)
T ss_pred ----------------c----cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHH
Confidence 0 0000000111111111111111111111100 0012245566554443 345666667
Q ss_pred HHHHHHHHcCCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChHHHHH
Q 003946 472 HFLIKAEKENLQV----SHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS---SSVYASLLKAYIEANRPREVTA 544 (784)
Q Consensus 472 ~~~~~m~~~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~ 544 (784)
..+.+..+.-.|- +|. ..|..+-+.|-..|+++.|+.+|++..+...+-- ..+|-....+=.+..+++.|.+
T Consensus 368 ~tyteAv~~vdP~ka~Gs~~-~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~ 446 (835)
T KOG2047|consen 368 NTYTEAVKTVDPKKAVGSPG-TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALK 446 (835)
T ss_pred HHHHHHHHccCcccCCCChh-hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 7777765542111 222 3467777788888888888888888776644321 3455555555566677777777
Q ss_pred HHHHHHHcC----------CCC-------CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 545 LLRDARSAG----------IQL-------DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 545 ~~~~m~~~g----------~~p-------~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
+.+....-- ..| +...|.-.+..--..|-++....+++.+.+..+..| .........+...
T Consensus 447 lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP--qii~NyAmfLEeh 524 (835)
T KOG2047|consen 447 LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP--QIIINYAMFLEEH 524 (835)
T ss_pred HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhh
Confidence 776653210 011 123455555555556777778888888887765433 2222222334444
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H-HHcCCC
Q 003946 608 HEAGLMAKLLQEVKEGQRIDCGV-HDWNNVIHFFCK---KRLMQDAEKALKRMRSLGHLPNAQTFHSMVTG-Y-AAIGGK 681 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~p~~-~~y~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a-~-~~~g~~ 681 (784)
.-++++.+++++-....+. |++ ..||.-+..+.+ .-.++.|..+|++.++ |++|...-+-.|+-+ + -..| .
T Consensus 525 ~yfeesFk~YErgI~LFk~-p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~G-L 601 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKW-PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHG-L 601 (835)
T ss_pred HHHHHHHHHHHcCCccCCC-ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhh-H
Confidence 5567777777766554432 222 346665555543 2247888888888887 566643322222222 1 1234 6
Q ss_pred HHHHHHHHHHHHh
Q 003946 682 YTEVTELWGEMKS 694 (784)
Q Consensus 682 ~~~a~~~~~~m~~ 694 (784)
...|..++++...
T Consensus 602 ar~amsiyerat~ 614 (835)
T KOG2047|consen 602 ARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHHHh
Confidence 6667777776554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-06 Score=87.02 Aligned_cols=164 Identities=11% Similarity=-0.017 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLK 531 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 531 (784)
.|...+.+-|+-.++.++|...|++..+-+ +-....|+.+.+-|....+...|.+-|+...+.. +.|-..|-.|-+
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN---p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN---PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQ 406 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC---cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhH
Confidence 345556667777788888888888888776 4556667777788888888888888888888765 447788888888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHH
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 611 (784)
+|.-.+...-|+-.|++..+-. +-|...|.+|-.+|.+.++.++|++.|+.....|- .+...+..|.+.+.+.++.+
T Consensus 407 aYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d--te~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD--TEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHhHH
Confidence 8888888888888888877653 33777888888888888888888888888887663 34567888888888888888
Q ss_pred HHHHHHHHHHh
Q 003946 612 LMAKLLQEVKE 622 (784)
Q Consensus 612 ~a~~~~~~~~~ 622 (784)
+|.+.|+.-.+
T Consensus 484 eAa~~yek~v~ 494 (559)
T KOG1155|consen 484 EAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHH
Confidence 88877766544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.8e-07 Score=89.69 Aligned_cols=222 Identities=14% Similarity=0.077 Sum_probs=165.3
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPRE 541 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 541 (784)
.-.|+...|..-|+...... +.+...|.-+-.+|....+.++....|+...+.+.. |..+|-.=..++.-.+++++
T Consensus 337 fL~g~~~~a~~d~~~~I~l~---~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLD---PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhcCCchhhhhhHHHHHhcC---cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 44577788889999888766 233333777778888999999999999998887633 55566666666777788999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003946 542 VTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK 621 (784)
Q Consensus 542 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 621 (784)
|..=|++..... +-+...|--+--+.-+.+.++++...|++..+.- |.-+..|+.....+...++++.|.+.|+...
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 999999887642 1134455555555567889999999999988764 7777899999999999999999999999888
Q ss_pred hcCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 622 EGQRI------DCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 622 ~~~~~------~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
+..+. .+...+..+++..-- .+++..|++++++..+. .| ....|..|...-.+.| +.++|+++|++...
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~-~i~eAielFEksa~ 565 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRG-KIDEAIELFEKSAQ 565 (606)
T ss_pred hhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 74432 122222333333222 38899999999998874 45 4677888888888999 99999999998765
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-08 Score=97.35 Aligned_cols=200 Identities=15% Similarity=0.114 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD---PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 3455556666666666666666666665543 3334455555556666666666666666655543 22344555555
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 531 KAYIEANRPREVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
..+...|++++|...+++..+....+ ....+..+...+...|++++|...+++..... |.
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----------------- 167 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQ----------------- 167 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC-----------------
Confidence 55555666666666665554421111 22233334444444445555544444444322 22
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Q 003946 610 AGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELW 689 (784)
Q Consensus 610 ~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~ 689 (784)
+...+..+...+...|++++|.+.+++..+. ...+...+..+...+...| +.+.|..++
T Consensus 168 -------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~a~~~~ 226 (234)
T TIGR02521 168 -------------------RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALG-DVAAAQRYG 226 (234)
T ss_pred -------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 2334555666666666666666666666554 2234444555555555566 666666666
Q ss_pred HHHHh
Q 003946 690 GEMKS 694 (784)
Q Consensus 690 ~~m~~ 694 (784)
+.+..
T Consensus 227 ~~~~~ 231 (234)
T TIGR02521 227 AQLQK 231 (234)
T ss_pred HHHHh
Confidence 55543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.1e-06 Score=85.24 Aligned_cols=494 Identities=10% Similarity=0.029 Sum_probs=248.0
Q ss_pred chhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCccH
Q 003946 105 RYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPA 184 (784)
Q Consensus 105 ~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 184 (784)
.++.++....+|.+ .+-..+..+.++++.-..+ ..|.+.... -+...+..++...+......|-++.+
T Consensus 90 c~er~lv~mHkmpR--------Iwl~Ylq~l~~Q~~iT~tR---~tfdrALra-LpvtqH~rIW~lyl~Fv~~~~lPets 157 (835)
T KOG2047|consen 90 CFERCLVFMHKMPR--------IWLDYLQFLIKQGLITRTR---RTFDRALRA-LPVTQHDRIWDLYLKFVESHGLPETS 157 (835)
T ss_pred HHHHHHHHHhcCCH--------HHHHHHHHHHhcchHHHHH---HHHHHHHHh-CchHhhccchHHHHHHHHhCCChHHH
Confidence 34455555555543 3444444444444443333 344444333 23334666777777777888888899
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhh
Q 003946 185 STILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCL 264 (784)
Q Consensus 185 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 264 (784)
..++++.++- ++..-+-.|.-+++. +++++|-+.+. .+....+..+ ...+.+...|+-+-...+
T Consensus 158 ~rvyrRYLk~----~P~~~eeyie~L~~~--------d~~~eaa~~la--~vln~d~f~s--k~gkSn~qlw~elcdlis 221 (835)
T KOG2047|consen 158 IRVYRRYLKV----APEAREEYIEYLAKS--------DRLDEAAQRLA--TVLNQDEFVS--KKGKSNHQLWLELCDLIS 221 (835)
T ss_pred HHHHHHHHhc----CHHHHHHHHHHHHhc--------cchHHHHHHHH--HhcCchhhhh--hcccchhhHHHHHHHHHH
Confidence 9999988864 444456666666665 77788777666 4432111100 112455667777777776
Q ss_pred hcCChhHHH---HHHHhhhhCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhc
Q 003946 265 LFETTRKAE---QLLDIMPRIGVKADS--NLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKF 339 (784)
Q Consensus 265 ~~g~~~~A~---~l~~~m~~~g~~pd~--~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 339 (784)
++.+.-..+ .+++.+... -+|. ..|++|.+-|.+.|.++.|..+|++..... ..... ++.+.+.|+.-
T Consensus 222 ~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v-~tvrD----Ft~ifd~Ya~F 294 (835)
T KOG2047|consen 222 QNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV-MTVRD----FTQIFDAYAQF 294 (835)
T ss_pred hCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-eehhh----HHHHHHHHHHH
Confidence 665544333 334443332 2555 789999999999999999999999977752 21111 55555666543
Q ss_pred CChhHHHHHHHHHH--H----HHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhh
Q 003946 340 GDLNSASKMVLEML--Q----RAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDR 413 (784)
Q Consensus 340 g~~~~A~~~~~~m~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (784)
....-+..+= +- + .+-+.+......+..+....+- ..-+++ .+. + ......|..
T Consensus 295 EE~~~~~~me--~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~--~lNsVl---LRQ-n-~~nV~eW~k----------- 354 (835)
T KOG2047|consen 295 EESCVAAKME--LADEESGNEEDDVDLELHMARFESLMNRRPL--LLNSVL---LRQ-N-PHNVEEWHK----------- 354 (835)
T ss_pred HHHHHHHHHh--hhhhcccChhhhhhHHHHHHHHHHHHhccch--HHHHHH---Hhc-C-CccHHHHHh-----------
Confidence 2211111110 10 0 0001111111111111111000 000000 000 0 000000100
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Q 003946 414 KFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP------TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD 487 (784)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~ 487 (784)
.+.........++...+++...+.| -...|..+.+.|-.+|+++.|..+|++..+.. -+.
T Consensus 355 -----------RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~---y~~ 420 (835)
T KOG2047|consen 355 -----------RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP---YKT 420 (835)
T ss_pred -----------hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC---ccc
Confidence 0111111111112222221111233 23578999999999999999999999987654 222
Q ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------C------CCHHHHHHHHHHHHHcCChHHHHHHH
Q 003946 488 D----AALGHVITLCISLGWLDQAHDLLDEMHLAGV-----------R------ASSSVYASLLKAYIEANRPREVTALL 546 (784)
Q Consensus 488 ~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----------~------~~~~~~~~li~~~~~~g~~~~A~~~~ 546 (784)
. .+|..-...=.+..+++.|.++.+.....-- + .+...|...++.--..|-++....++
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 2 2333333444456678888887776553211 1 13445666666666778888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh---cCcHHHHHHHHHHHHhc
Q 003946 547 RDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ---NHEAGLMAKLLQEVKEG 623 (784)
Q Consensus 547 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~ 623 (784)
+++.+..+. ++...-.....+-.+.-++++.+++++-+..--.|.....|++.+.-+.+ ...++.|..+|+...+.
T Consensus 501 driidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 501 DRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG 579 (835)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 888775543 22221112222334445566666665544333233334455555544433 12466677777666653
Q ss_pred CCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 003946 624 QRIDCGVHDWNNVIHFFC----KKRLMQDAEKALKRMRSLGHLPN--AQTFHSMVT 673 (784)
Q Consensus 624 ~~~~p~~~~y~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~ 673 (784)
- .|.. -..+--.|+ +.|....|+.++++.-.. +++. ...|++.|.
T Consensus 580 C--pp~~--aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 580 C--PPEH--AKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIK 630 (835)
T ss_pred C--CHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 2 1221 122222232 345566666666664432 3332 234555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-06 Score=89.74 Aligned_cols=230 Identities=15% Similarity=0.064 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKA 532 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 532 (784)
.+-.=|.++.+.|+..+-..+=.++.... +-...+|-++.--|...|+..+|++.|.+....+-. =...|-.+...
T Consensus 280 ~~~~~ia~l~el~~~n~Lf~lsh~LV~~y---P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghs 355 (611)
T KOG1173|consen 280 CLPLHIACLYELGKSNKLFLLSHKLVDLY---PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHS 355 (611)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHhC---CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHH
Confidence 33334445555555555555555555443 344445555555555555566666655554433211 12345555555
Q ss_pred HHHcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcH
Q 003946 533 YIEANRPREVTALLRDARSA--GIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEA 610 (784)
Q Consensus 533 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~ 610 (784)
|+-.|..++|...+....+. |.. -+..|. ---|.+.++.+.|.+.|.+... +.|.++...+-+.-...+.+.+
T Consensus 356 fa~e~EhdQAmaaY~tAarl~~G~h-lP~LYl--gmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y 430 (611)
T KOG1173|consen 356 FAGEGEHDQAMAAYFTAARLMPGCH-LPSLYL--GMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEY 430 (611)
T ss_pred hhhcchHHHHHHHHHHHHHhccCCc-chHHHH--HHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhh
Confidence 55555555555555544321 110 111111 1223344555555555554433 3355555555555555555555
Q ss_pred HHHHHHHHHHHhcCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHH
Q 003946 611 GLMAKLLQEVKEGQR----IDC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEV 685 (784)
Q Consensus 611 ~~a~~~~~~~~~~~~----~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a 685 (784)
.+|..+|+.....-+ -.+ ...+++.|.++|.+.+.+++|+..+++.+.. ..-|..++.++.-.|...| +++.|
T Consensus 431 ~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llg-nld~A 508 (611)
T KOG1173|consen 431 PEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLG-NLDKA 508 (611)
T ss_pred HHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhc-ChHHH
Confidence 555555544431100 000 2234555555555555555555555555543 1224555555555555555 55555
Q ss_pred HHHHHHHH
Q 003946 686 TELWGEMK 693 (784)
Q Consensus 686 ~~~~~~m~ 693 (784)
...|.+..
T Consensus 509 id~fhKaL 516 (611)
T KOG1173|consen 509 IDHFHKAL 516 (611)
T ss_pred HHHHHHHH
Confidence 55555554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-05 Score=82.48 Aligned_cols=380 Identities=12% Similarity=0.053 Sum_probs=238.7
Q ss_pred CCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHH
Q 003946 250 KPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFY 329 (784)
Q Consensus 250 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~ 329 (784)
..+.++|..+--.+-...++++|++.|....+.+ +-|...+-.+--.=.+.|+++.....-....+..+.... .|
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra----~w 146 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA----SW 146 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH----HH
Confidence 3445667766655656788999999999888754 234455655544456677887777766666664333333 59
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhh
Q 003946 330 NCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDF 409 (784)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (784)
..+.-++.-.|+...|..+++...+...
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~---------------------------------------------------- 174 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEKTQN---------------------------------------------------- 174 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------------------------------------
Confidence 9999999999999999999998887431
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHH------HHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003946 410 TKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYI------KLVKAFLEAGKTKELTHFLIKAEKENLQ 483 (784)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~li~~~~~~g~~~~a~~~~~~m~~~~~~ 483 (784)
..|+...|. -......+.|..++|.+.+..-...
T Consensus 175 -------------------------------------~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--- 214 (700)
T KOG1156|consen 175 -------------------------------------TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--- 214 (700)
T ss_pred -------------------------------------cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---
Confidence 012221111 1223456777888888877665443
Q ss_pred CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCChHHHH-HHHHHHHHcCC---CCC
Q 003946 484 VSHDDAA-LGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA-SLLKAYIEANRPREVT-ALLRDARSAGI---QLD 557 (784)
Q Consensus 484 ~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~-~~~~~m~~~g~---~p~ 557 (784)
..|... -.+-..-+.+.+++++|..++..+.... ||-.-|. .+..++.+--+..++. .+|....+.-. .|-
T Consensus 215 -i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~ 291 (700)
T KOG1156|consen 215 -IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR 291 (700)
T ss_pred -HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch
Confidence 223322 2333456678899999999999998874 5555544 4445554444444444 66666654311 111
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cC--------C
Q 003946 558 ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE----GQ--------R 625 (784)
Q Consensus 558 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~--------~ 625 (784)
-...+.+ .+ ..-.+..-.++..+.+.|+ |+ ++..+...|-.....+-.+++.-.+.. .+ .
T Consensus 292 Rlplsvl-~~---eel~~~vdkyL~~~l~Kg~-p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 292 RLPLSVL-NG---EELKEIVDKYLRPLLSKGV-PS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred hccHHHh-Cc---chhHHHHHHHHHHHhhcCC-Cc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 1111111 11 1122334455666667776 32 566666666554443333333322221 10 0
Q ss_pred -CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCC
Q 003946 626 -IDCGVHD--WNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ-TFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSM 701 (784)
Q Consensus 626 -~~p~~~~--y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~ 701 (784)
-.|.... +-.++..|-+.|+++.|+..++...+. .|+.+ -|..=.+.+.+.| ++++|..++++..+. -
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G-~l~eAa~~l~ea~el-----D 435 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAG-LLDEAAAWLDEAQEL-----D 435 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhc-----c
Confidence 1344444 456888999999999999999998874 67644 3444457888889 999999999999873 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 702 NFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 702 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
.||..+-.--..-..++++.++|.++.......|. +....-.-+
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~m 479 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEM 479 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHh
Confidence 35666655777788899999999999999998886 555555555
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.9e-08 Score=108.07 Aligned_cols=163 Identities=12% Similarity=-0.057 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...++...+.... +...+..+
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~ 412 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLS---PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITK 412 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHH
Confidence 45566666666677777777777777776665 444555666666777777777777777777665422 22222333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
+..+...|++++|...+++..+.. .| +...+..+..++...|+.++|...++++.... |......+.+...+...|
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhccH
Confidence 444555667777777777665442 23 33345555566666777777777766654332 333333333444444444
Q ss_pred cHHHHHHHHHHHH
Q 003946 609 EAGLMAKLLQEVK 621 (784)
Q Consensus 609 ~~~~a~~~~~~~~ 621 (784)
+.+...++.+.
T Consensus 490 --~~a~~~l~~ll 500 (553)
T PRK12370 490 --ERALPTIREFL 500 (553)
T ss_pred --HHHHHHHHHHH
Confidence 24444444433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.1e-08 Score=106.95 Aligned_cols=265 Identities=9% Similarity=-0.059 Sum_probs=154.3
Q ss_pred CHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHH
Q 003946 450 TEKIYIKLVKAFLE-----AGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCIS---------LGWLDQAHDLLDEMH 515 (784)
Q Consensus 450 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~ 515 (784)
+...|...+.+-.. .+.+++|..+|++..+.. +-+...|..+..++.. .+++++|...+++..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld---P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS---PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 44455555554322 123567888888877665 3334445444444332 234677888887777
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHH
Q 003946 516 LAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQ 595 (784)
Q Consensus 516 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 595 (784)
+.+ +-+...+..+...+...|++++|...|++..+.+ +.+...|..+...+...|++++|+..+++..+.. |.+..
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~ 407 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAA 407 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChh
Confidence 764 2356677777777777788888888888877653 2245566777777777788888888888777765 44443
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTF-HSMVT 673 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~ 673 (784)
.+..++..+...|++++|...+++...... | +...+..+..+|...|+.++|...++++... .|+..+. +.+..
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~--p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~ 483 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHL--QDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYA 483 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhcc--ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHH
Confidence 444444455666777777777777655421 2 2334566667777777777777777776543 3443333 33333
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 674 GYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 674 a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
.|...| +.+...++.+.+... ..|....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 484 ~~~~~g---~~a~~~l~~ll~~~~---~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 484 EYCQNS---ERALPTIREFLESEQ---RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHhccH---HHHHHHHHHHHHHhh---HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 444444 466666666554221 11211112 33344445565555555 666654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.5e-06 Score=86.03 Aligned_cols=287 Identities=11% Similarity=0.025 Sum_probs=226.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
.-+......-..-|-..+++.+..++++...+.. ++....+..-|.++...|+..+-..+=..|.+. .+-...+|-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d---pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD---PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC---CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchh
Confidence 4455666667777788899999999999998876 566666777778888999988887777788776 344678999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLD-ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ 606 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 606 (784)
++..-|.-.|+..+|.+.|.+.... .|. ...|-.+-.+|+-.|..++|+..+....+.- |..+.-+-.+..-|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHH
Confidence 9999999999999999999987643 222 3478888999999999999999988776642 2223334555667899
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC---C-CCHHHHHHHHHHHHHcCC
Q 003946 607 NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL--GH---L-PNAQTFHSMVTGYAAIGG 680 (784)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~-p~~~~~~~ll~a~~~~g~ 680 (784)
.++++.|.++|.......+. |....+-+.-..-..+.+.+|..+|+..+.. .+ + --..+++.|..+|.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~--Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~- 469 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPS--DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN- 469 (611)
T ss_pred hccHHHHHHHHHHHHhcCCC--cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh-
Confidence 99999999999999886543 4555666666667788899999999887732 01 1 13557888889999999
Q ss_pred CHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 003946 681 KYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHK 752 (784)
Q Consensus 681 ~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 752 (784)
.+++|+..+++.... .+-+..+|.++.-.|...|+++.|.+.|.+... +.||..+-+.++.....
T Consensus 470 ~~~eAI~~~q~aL~l-----~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLL-----SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred hHHHHHHHHHHHHHc-----CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 999999999998873 334889999999999999999999999999876 69999999999954433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-06 Score=93.15 Aligned_cols=293 Identities=15% Similarity=0.133 Sum_probs=193.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhc
Q 003946 295 AHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVG 374 (784)
Q Consensus 295 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 374 (784)
...+...|++++|.+.++.-... .++... +.......+.+.|+.++|..++..+..++
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~---~~E~rA~ll~kLg~~~eA~~~y~~Li~rN------------------ 68 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLA---VLEKRAELLLKLGRKEEAEKIYRELIDRN------------------ 68 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHC------------------
Confidence 34467778888888877665553 333332 46777777888888888888888877743
Q ss_pred cCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCH-HH
Q 003946 375 VNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTE-KI 453 (784)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~ 453 (784)
|+- .-
T Consensus 69 --------------------------------------------------------------------------Pdn~~Y 74 (517)
T PF12569_consen 69 --------------------------------------------------------------------------PDNYDY 74 (517)
T ss_pred --------------------------------------------------------------------------CCcHHH
Confidence 322 33
Q ss_pred HHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHH
Q 003946 454 YIKLVKAFLEA-----GKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWL-DQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 454 ~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
|..+..+..-. .+.+...++++++.... |.......+.-.+..-..+ ..+..++..+.+.|++ .+|+
T Consensus 75 y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y----p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~ 147 (517)
T PF12569_consen 75 YRGLEEALGLQLQLSDEDVEKLLELYDELAEKY----PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFS 147 (517)
T ss_pred HHHHHHHHhhhcccccccHHHHHHHHHHHHHhC----ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHH
Confidence 33444443222 24566677777766543 2222221121111111122 3455666677777765 3566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCC
Q 003946 528 SLLKAYIEANRPREVTALLRDARSA----G----------IQLDAS--CYEALLQSKIVQKDTPGALHLFKEMKESKIPR 591 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~----g----------~~p~~~--t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 591 (784)
.|-..|....+..-...++...... + -.|... ++.-+...|-..|+.++|+++.++.+++. |
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--P 225 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--P 225 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--C
Confidence 6666677666666666666665432 1 123443 44556777788999999999999998875 7
Q ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------
Q 003946 592 SGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA------ 665 (784)
Q Consensus 592 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------ 665 (784)
..+..|..-...+-+.|++.+|.+.++.....+. -|-..-+--+..+.++|++++|.+++......+..|-.
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~--~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAAEAMDEARELDL--ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 7788999999999999999999999999988654 35555666777788999999999999999887654432
Q ss_pred HHH--HHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 003946 666 QTF--HSMVTGYAAIGGKYTEVTELWGEMKSF 695 (784)
Q Consensus 666 ~~~--~~ll~a~~~~g~~~~~a~~~~~~m~~~ 695 (784)
..| .....+|.+.| ++..|++.|..+.+.
T Consensus 304 c~Wf~~e~a~a~~r~~-~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 304 CMWFETECAEAYLRQG-DYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 133 24456888999 999998888777654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.2e-06 Score=78.65 Aligned_cols=152 Identities=9% Similarity=0.034 Sum_probs=95.3
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccC
Q 003946 169 IYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIA 248 (784)
Q Consensus 169 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~ 248 (784)
.++..+|...|++++|..++.-+.+..- |+...|-.|-.++-- -|.+.+|..+-. +
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~-~~~el~vnLAcc~Fy--------Lg~Y~eA~~~~~--k------------- 116 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDD-APAELGVNLACCKFY--------LGQYIEAKSIAE--K------------- 116 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCC-CCcccchhHHHHHHH--------HHHHHHHHHHHh--h-------------
Confidence 3456677788999999999988776533 333333333222222 278888876654 2
Q ss_pred CCCchhhHHHHHHHh-hhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHH
Q 003946 249 MKPNTNTFNIALAGC-LLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQ 327 (784)
Q Consensus 249 ~~p~~~~~~~ll~~~-~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~ 327 (784)
.|+....+.++-.+ -+.++-++-..+++.+... ..-..+|.+..--.-.+++|.+++..+...++....
T Consensus 117 -a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a---- 186 (557)
T KOG3785|consen 117 -APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA---- 186 (557)
T ss_pred -CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh----
Confidence 34444555555444 4778888877777776542 233445555544455789999999998875433322
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003946 328 FYNCLLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
.---+.-+|.|..-++-+.+++.-..+
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 122345578888888888888877665
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.4e-05 Score=75.12 Aligned_cols=401 Identities=12% Similarity=0.035 Sum_probs=241.5
Q ss_pred CCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccc
Q 003946 87 ARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKE 166 (784)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 166 (784)
+.+...-...+..|...++-+.|+....+.+...- ..--+.++..+.+.|..+. +++. -+...+.+
T Consensus 94 ~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r---~p~inlMla~l~~~g~r~~-~~vl-~ykevvre--------- 159 (564)
T KOG1174|consen 94 FGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLR---SPRINLMLARLQHHGSRHK-EAVL-AYKEVIRE--------- 159 (564)
T ss_pred cccHHHHHHHHHHHHHHccchHHHHHHhcCCcccc---chhHHHHHHHHHhcccccc-HHHH-hhhHHHHh---------
Confidence 44666667788888899999999988876544221 2233566666665543322 2221 11111111
Q ss_pred hHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccc
Q 003946 167 PLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPL 246 (784)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~ 246 (784)
-.-|++.+.-..+.++....++ ++ .|..
T Consensus 160 --------------cp~aL~~i~~ll~l~v~g~e~~--S~----------------------------~m~~-------- 187 (564)
T KOG1174|consen 160 --------------CPMALQVIEALLELGVNGNEIN--SL----------------------------VMHA-------- 187 (564)
T ss_pred --------------cchHHHHHHHHHHHhhcchhhh--hh----------------------------hhhh--------
Confidence 1234444544554444322222 21 1111
Q ss_pred cCCCCchhhHHHHHHHhhh--cCChhHHHHHHHhhhh-CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChh
Q 003946 247 IAMKPNTNTFNIALAGCLL--FETTRKAEQLLDIMPR-IGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDI 323 (784)
Q Consensus 247 ~~~~p~~~~~~~ll~~~~~--~g~~~~A~~l~~~m~~-~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 323 (784)
..+.|+.-+...-+.++++ .++...|.+++--... .-++-|......+.+.+...|+.++|...|+.....++-...
T Consensus 188 ~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~ 267 (564)
T KOG1174|consen 188 ATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE 267 (564)
T ss_pred eecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh
Confidence 1223333333334444443 4455555554443332 235567788899999999999999999999997765433222
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccc
Q 003946 324 QFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHI 403 (784)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (784)
. .-.|..| +.+.|+.+....+...+....
T Consensus 268 ~-MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~----------------------------------------------- 296 (564)
T KOG1174|consen 268 A-MDLYAVL---LGQEGGCEQDSALMDYLFAKV----------------------------------------------- 296 (564)
T ss_pred h-HHHHHHH---HHhccCHhhHHHHHHHHHhhh-----------------------------------------------
Confidence 1 0124433 456677777666666555432
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003946 404 LSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQ 483 (784)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 483 (784)
+-....|-.-....-...+++.|+.+-++..+.+
T Consensus 297 --------------------------------------------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-- 330 (564)
T KOG1174|consen 297 --------------------------------------------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-- 330 (564)
T ss_pred --------------------------------------------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--
Confidence 1111223333334446677888888887776655
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 484 VSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563 (784)
Q Consensus 484 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 563 (784)
+-+...|..-...+...|+.++|.-.|+...... +-+..+|..|+..|...|++.+|.-+-+...+. +.-+..+.+.
T Consensus 331 -~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL 407 (564)
T KOG1174|consen 331 -PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTL 407 (564)
T ss_pred -cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhh
Confidence 3334444444466778889999998888877653 236788999999999999998887666554322 1224444443
Q ss_pred HH-HHHH-HcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 003946 564 LL-QSKI-VQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFC 641 (784)
Q Consensus 564 li-~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~ 641 (784)
+- ..|. .-..-++|..+++.-.... |.-....+.+...|...|..+++..+++..... .||....+.|.+.+.
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIMR 482 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHHH
Confidence 31 2222 2223567888887766543 665667777777888888888888888887774 368888888888888
Q ss_pred hcCCHHHHHHHHHHHHh
Q 003946 642 KKRLMQDAEKALKRMRS 658 (784)
Q Consensus 642 ~~g~~~~A~~~~~~m~~ 658 (784)
..+.+.+|++.|...+.
T Consensus 483 A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALR 499 (564)
T ss_pred HhhhHHHHHHHHHHHHh
Confidence 88888888888877765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.3e-07 Score=96.30 Aligned_cols=242 Identities=16% Similarity=0.126 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-CCC
Q 003946 490 ALGHVITLCISLGWLDQAHDLLDEMHLA-----GV-RASSS-VYASLLKAYIEANRPREVTALLRDARSA-----G-IQL 556 (784)
Q Consensus 490 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p 556 (784)
|...+...|...|+++.|..+++...+. |. .|.+. ..+.+...|...+++++|..+|+++... | ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444666677777777777777665543 21 12222 2233556677777777777777776431 2 112
Q ss_pred C-HHHHHHHHHHHHHcCChhHHHHHHHHhHhc-----CCC-CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--CC
Q 003946 557 D-ASCYEALLQSKIVQKDTPGALHLFKEMKES-----KIP-RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQR--ID 627 (784)
Q Consensus 557 ~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~ 627 (784)
. ..+++.|-.+|.+.|++++|...+++..+- +.. |.-...++.+...|...+++++|..+++...+... +.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 235666666777777777766666554321 111 22233466666777788888888887765443222 11
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 003946 628 CG----VHDWNNVIHFFCKKRLMQDAEKALKRMRSL----GH--LP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFA 696 (784)
Q Consensus 628 p~----~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----g~--~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~ 696 (784)
++ ..+|+.|...|-..|++++|++++++.+.. +. .+ ....++-+-.+|.+.+ ++++|.++|.+.....
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k-~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK-KYEEAEQLFEEAKDIM 439 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc-ccchHHHHHHHHHHHH
Confidence 22 357999999999999999999999988764 11 22 2456778888998888 9999999998876654
Q ss_pred cCCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 697 SSTSM-NFD-EELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 697 ~~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
+..|. .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22332 233 4579999999999999999999987766
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.9e-06 Score=78.43 Aligned_cols=203 Identities=12% Similarity=0.076 Sum_probs=121.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-H----cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHH
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKI-V----QKDTPGALHLFKEMKESKIPRSGHQEFEMLVK 602 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~ 602 (784)
.|+--|.+.+++.+|..+.+++.- ..|-......+..+-. + .....-|.+.|+-.-+.+...++..--.++..
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 455567788888888887776631 1222233333322221 1 11344566666665555554444434455555
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCC
Q 003946 603 GCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTG-YAAIGGK 681 (784)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a-~~~~g~~ 681 (784)
.+.-..+++++.-.+..+..-. ..-|...| .+..+++..|.+.+|+++|-++....+ -|..+|.+++.- |.+.+ .
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nk-k 443 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYF-TNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNK-K 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcC-C
Confidence 5556667777777777776543 22244333 467888888999999998876654322 356777766554 44555 7
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003946 682 YTEVTELWGEMKSFASSTSMNFDEE-LLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRT 745 (784)
Q Consensus 682 ~~~a~~~~~~m~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 745 (784)
.+.|+.++-++.. ..+.. ....+.+-|.+++.+=-|.+.|++++. ..|++..|..
T Consensus 444 P~lAW~~~lk~~t-------~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeG 499 (557)
T KOG3785|consen 444 PQLAWDMMLKTNT-------PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEG 499 (557)
T ss_pred chHHHHHHHhcCC-------chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCC
Confidence 8777666544432 11222 234456778888888888888888876 4677777753
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-05 Score=81.24 Aligned_cols=441 Identities=13% Similarity=0.127 Sum_probs=237.8
Q ss_pred HHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHH-
Q 003946 128 VNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAI- 206 (784)
Q Consensus 128 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l- 206 (784)
...++..+-+.+.-+.+++|.....++... .+-+++.+..=+-+..+.+++++|+.+.+.-.. ..+++..
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~---~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~ 82 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSI---VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFF 82 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhc---CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhh
Confidence 357777888888888888888888888765 123555666677788889999999865554321 1222222
Q ss_pred -HHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCc-hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCC
Q 003946 207 -LAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPN-TNTFNIALAGCLLFETTRKAEQLLDIMPRIGV 284 (784)
Q Consensus 207 -l~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~ 284 (784)
=.+||... .+..++|+..++ -. .++ ..+...=-..+-+.|++++|+.+|+++.+++.
T Consensus 83 fEKAYc~Yr------lnk~Dealk~~~--~~-------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 83 FEKAYCEYR------LNKLDEALKTLK--GL-------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHHHHHH------cccHHHHHHHHh--cc-------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45665432 277888888776 33 222 22444455667789999999999999988764
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHH
Q 003946 285 KA-DSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSL 363 (784)
Q Consensus 285 ~p-d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 363 (784)
+- |......++.+-.. -.+. +.+.... ....++...||+- -.++..|++.+|+++++.-...+..+...
T Consensus 142 dd~d~~~r~nl~a~~a~----l~~~-~~q~v~~---v~e~syel~yN~A-c~~i~~gky~qA~elL~kA~~~~~e~l~~- 211 (652)
T KOG2376|consen 142 DDQDEERRANLLAVAAA----LQVQ-LLQSVPE---VPEDSYELLYNTA-CILIENGKYNQAIELLEKALRICREKLED- 211 (652)
T ss_pred chHHHHHHHHHHHHHHh----hhHH-HHHhccC---CCcchHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHHHhhcc-
Confidence 31 11222222222111 1111 2222222 1122222245543 44677999999999999886654311000
Q ss_pred HHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 003946 364 AAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTE 443 (784)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (784)
+ ... ..+...
T Consensus 212 ------------~------------------------------------d~~---eEeie~------------------- 221 (652)
T KOG2376|consen 212 ------------E------------------------------------DTN---EEEIEE------------------- 221 (652)
T ss_pred ------------c------------------------------------ccc---hhhHHH-------------------
Confidence 0 000 000000
Q ss_pred cCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHH---HHHHcCCHHH--HHHHHH------
Q 003946 444 HGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVIT---LCISLGWLDQ--AHDLLD------ 512 (784)
Q Consensus 444 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~---~~~~~g~~~~--a~~~~~------ 512 (784)
..+ .+---|.-++-..|+.++|.+++....+.. ++|........+ +...-.++-. +...++
T Consensus 222 ----el~-~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~---~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l 293 (652)
T KOG2376|consen 222 ----ELN-PIRVQLAYVLQLQGQTAEASSIYVDIIKRN---PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKL 293 (652)
T ss_pred ----HHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHhc---CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHh
Confidence 001 111234445667788888888888887776 455532222111 1111111100 000000
Q ss_pred ------HHH-----------------------------Hc-CCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCC
Q 003946 513 ------EMH-----------------------------LA-GVRASSSVYASLLKAYIEA--NRPREVTALLRDARSAGI 554 (784)
Q Consensus 513 ------~m~-----------------------------~~-g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~ 554 (784)
.+. .. +..|. ..+.+++....+. ....++..++...-+...
T Consensus 294 ~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p 372 (652)
T KOG2376|consen 294 AEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHP 372 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC
Confidence 000 00 11122 2233333333222 235556666665554422
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHH--------HhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC
Q 003946 555 QLDASCYEALLQSKIVQKDTPGALHLFK--------EMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRI 626 (784)
Q Consensus 555 ~p~~~t~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 626 (784)
.-.....-.++......|+++.|++++. .+.+.+.. +.+..++...+.+.++-+.|..+++........
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~---P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL---PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC---hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 2223455566666777888888888887 44444433 346677777777777777777766655432210
Q ss_pred -CCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003946 627 -DCGVHDWNNV----IHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMK 693 (784)
Q Consensus 627 -~p~~~~y~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~ 693 (784)
.+.....+++ ...-.+.|+-++|..+++++.+. ..+|..+...++.+|+.. +.+.|..+-..+.
T Consensus 450 ~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~--d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 450 QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL--DPEKAESLSKKLP 518 (652)
T ss_pred hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc--CHHHHHHHhhcCC
Confidence 1122223333 33334678888888888888875 356777888888888874 4667766655543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-07 Score=89.41 Aligned_cols=203 Identities=11% Similarity=0.049 Sum_probs=119.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGH-VITLCISLGWLDQAHDLLDEMHLAGVRASSSVY 526 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 526 (784)
.|-+.||-.|-.+|.+..++..|+.+|.+-... .|-.+||.. +...+-..++.++|.++|+...+.. +.|+...
T Consensus 253 ~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEai 327 (478)
T KOG1129|consen 253 FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAI 327 (478)
T ss_pred CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceee
Confidence 344455555666666666666666666655443 344444332 3344555566666666666666543 2355555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCC-CcHHHHHHHHHHHH
Q 003946 527 ASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPR-SGHQEFEMLVKGCA 605 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~ll~~~~ 605 (784)
.++...|.-.++.+.|+.+++++.+-|+. +...|+.+--+|.-.++++-++.-|++....-..| .....|..+.....
T Consensus 328 Acia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 328 ACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV 406 (478)
T ss_pred eeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEE
Confidence 56666666666666666666666666643 55555655555556666666666666555432211 12234555555666
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 606 QNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
..|++..|.+.|+-....+. -....+|.|.-.-.+.|++++|..+++...+
T Consensus 407 ~iGD~nlA~rcfrlaL~~d~--~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLALTSDA--QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred eccchHHHHHHHHHHhccCc--chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66677777777766655432 2455677777777777888888877777665
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-06 Score=92.59 Aligned_cols=241 Identities=15% Similarity=0.154 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKE-----NLQVSHDDAAL-GHVITLCISLGWLDQAHDLLDEMHLA-----GV- 519 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~-----g~- 519 (784)
.+...+...|...|++++|..++....+. |. ..|...+. +.+-..|...+++++|..+|+++... |-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~-~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL-KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc-cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 45555999999999999999999987654 21 24555433 33667888999999999999998843 21
Q ss_pred -CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---c--CC-CCCHH-HHHHHHHHHHHcCChhHHHHHHHHhHhc----
Q 003946 520 -RASSSVYASLLKAYIEANRPREVTALLRDARS---A--GI-QLDAS-CYEALLQSKIVQKDTPGALHLFKEMKES---- 587 (784)
Q Consensus 520 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--g~-~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~---- 587 (784)
+.-..+++.|..+|.+.|++++|...+++..+ . |. .|.+. -++.+...|+..+++++|..+++...+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11245677888899999999999988887643 1 21 22332 3667777888899999999998876542
Q ss_pred -CCC-CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 588 -KIP-RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ----R-IDC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 588 -~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
|.. +....+++.|...|.+.|++++|.++|++..... + ..+ .-..++.|...|.+.++.++|.++|.+-..-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 211 1334679999999999999999999998876532 1 122 2456889999999999999999999875542
Q ss_pred ----C-CCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 660 ----G-HLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 660 ----g-~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
| -.|+ ..+|..|...|...| ++++|.++.+.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g-~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQG-NYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcc-cHHHHHHHHHHHHH
Confidence 2 1233 568889999999999 99999999988764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.2e-06 Score=90.05 Aligned_cols=261 Identities=14% Similarity=0.107 Sum_probs=189.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003946 458 VKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN 537 (784)
Q Consensus 458 i~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 537 (784)
...+...|++++|++.+..-... +......+......+.+.|+.++|..+|..+.+.+. .|..-|..+..+..-..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhc
Confidence 34568899999999999875544 344445566667888899999999999999999863 35666666766663332
Q ss_pred -----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHH
Q 003946 538 -----RPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDT-PGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611 (784)
Q Consensus 538 -----~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 611 (784)
..+....+++++...- |.......+.-.+.....+ ..+..++..+...|+ |+ +|+.+-..|....+..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv-Ps---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV-PS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC-ch---HHHHHHHHHcChhHHH
Confidence 5677888999887653 4433332222222221223 245566777777886 33 7888888888777777
Q ss_pred HHHHHHHHHHhcC----C---------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 003946 612 LMAKLLQEVKEGQ----R---------IDCGVH--DWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGY 675 (784)
Q Consensus 612 ~a~~~~~~~~~~~----~---------~~p~~~--~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~ 675 (784)
-..+++....... . -.|... ++.-+...|-..|++++|++++++.++. .|+ +..|..-...+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 7777776654321 1 124443 4566788899999999999999999985 676 56677778889
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003946 676 AAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKM 736 (784)
Q Consensus 676 ~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 736 (784)
.+.| ++++|.+.++....... -|..+-+-.+..+.++|++++|.+++......+.
T Consensus 239 Kh~G-~~~~Aa~~~~~Ar~LD~-----~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 239 KHAG-DLKEAAEAMDEARELDL-----ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHCC-CHHHHHHHHHHHHhCCh-----hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 9999 99999999999987321 2677777888999999999999999999987765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-07 Score=88.17 Aligned_cols=229 Identities=9% Similarity=0.060 Sum_probs=148.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003946 455 IKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYI 534 (784)
Q Consensus 455 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 534 (784)
+.|-.+|.+.|.+.+|.+.|..-.+. .|-..||..|-++|.+..++..|..+|.+-.+. ++-|+.....+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence 56778888888888888888887765 355666777888888888888888888887765 3334444455667777
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHH
Q 003946 535 EANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMA 614 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 614 (784)
..++.++|.++++...+.. ..++....++...|.-.++++-|+.+++++.+.|+.. +..
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s--peL------------------ 360 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS--PEL------------------ 360 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC--hHH------------------
Confidence 7788888888888887653 3456667777777777888888888888888887532 334
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003946 615 KLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN--AQTFHSMVTGYAAIGGKYTEVTELWGEM 692 (784)
Q Consensus 615 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~~a~~~~~~m 692 (784)
|+.+.-+|.-.+++|-++--|++....--.|+ ...|..+-......| ++..|.+.|+-.
T Consensus 361 ------------------f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iG-D~nlA~rcfrla 421 (478)
T KOG1129|consen 361 ------------------FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIG-DFNLAKRCFRLA 421 (478)
T ss_pred ------------------HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEecc-chHHHHHHHHHH
Confidence 44444444445555555555555444322232 233444444444455 666666666655
Q ss_pred HhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 693 KSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 693 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
... -.-+.+.+|.|.-.-.+.|++++|..++.....
T Consensus 422 L~~-----d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 422 LTS-----DAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hcc-----CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 431 112345566666666666666666666666554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00018 Score=77.37 Aligned_cols=129 Identities=9% Similarity=-0.020 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 003946 561 YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFF 640 (784)
Q Consensus 561 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~ 640 (784)
|......+.+.++.++|...+.+..... |..+..|......+...|..++|.+.|......++- ++....++..++
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~--hv~s~~Ala~~l 728 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD--HVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC--CcHHHHHHHHHH
Confidence 4444455556666666666665554432 444555555555556666666666666665553321 233455666666
Q ss_pred HhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 003946 641 CKKRLMQDAEK--ALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSF 695 (784)
Q Consensus 641 ~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~ 695 (784)
.+.|+..-|.. ++.++.+.+ .-+...|..+...+.+.| +.+.|.++|....+.
T Consensus 729 le~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~G-d~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLG-DSKQAAECFQAALQL 783 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcc-chHHHHHHHHHHHhh
Confidence 66666555555 666666542 224556666666666666 666666666655543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=8e-06 Score=83.17 Aligned_cols=232 Identities=11% Similarity=-0.054 Sum_probs=144.3
Q ss_pred CHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 003946 503 WLDQAHDLLDEMHLAG-VRAS--SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALH 579 (784)
Q Consensus 503 ~~~~a~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 579 (784)
..+.+..-+.++.... ..|+ ...|..+...|...|+.++|...|++..+.. ..+...|+.+-..+...|++++|+.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4555555565555432 1222 3456666667777777777777777776653 2356677777777777788888888
Q ss_pred HHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 580 LFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 580 ~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
.|++..+.. |....++..+...+...|++++|.+.|+...+.+ |+..........+...++.++|.+.|++....
T Consensus 120 ~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 777777654 6666777777777777888888888887777654 33211122222344567899999999776543
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC-CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003946 660 GHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS-TSMNF-DEELLDSVLYTFVRGGFFARANEVVAMMEEGKMF 737 (784)
Q Consensus 660 g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~-~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 737 (784)
..|+...+ . ......| +.+.+ ..++.+.+.... ..+.| ....|..+...+.+.|++++|...|++..+.+ .
T Consensus 195 -~~~~~~~~-~--~~~~~lg-~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~ 267 (296)
T PRK11189 195 -LDKEQWGW-N--IVEFYLG-KISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-V 267 (296)
T ss_pred -CCccccHH-H--HHHHHcc-CCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 23332222 1 2223345 55554 355555431100 01111 24578889999999999999999999998753 3
Q ss_pred CCHHHHHHHH
Q 003946 738 IDKYKYRTLF 747 (784)
Q Consensus 738 pd~~~~~~li 747 (784)
||.+-+...+
T Consensus 268 ~~~~e~~~~~ 277 (296)
T PRK11189 268 YNFVEHRYAL 277 (296)
T ss_pred chHHHHHHHH
Confidence 5766666655
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.7e-06 Score=74.67 Aligned_cols=206 Identities=13% Similarity=-0.008 Sum_probs=136.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
-|.-+|...|+...|..-+++.++.. +-+..+|..+...|.+.|+.+.|.+-|++..... |.+....|.....+|..
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhC
Confidence 44556666666666666666666553 1234466666666666666666666666666543 55556666666666667
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHH
Q 003946 608 HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVT 686 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~ 686 (784)
|++++|...|+.........-...+|..+.-+..+.|+.+.|.+.|++-++. .| ...+...+.......| ++-.|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~-~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAG-DYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcc-cchHHH
Confidence 7777777777666654332223456777777778888888888888888775 34 3456667777777778 888888
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003946 687 ELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTL 746 (784)
Q Consensus 687 ~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 746 (784)
.+++.... +..++.......|..-.+.|+-+.+.+.=..+... .|...-|-.+
T Consensus 194 ~~~~~~~~-----~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f 246 (250)
T COG3063 194 LYLERYQQ-----RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTF 246 (250)
T ss_pred HHHHHHHh-----cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence 88887776 23377777777788888888877777766666653 5666555544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.0001 Score=73.16 Aligned_cols=198 Identities=11% Similarity=0.030 Sum_probs=131.6
Q ss_pred HHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 003946 453 IYIKLVKAF--LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS-SSVYASL 529 (784)
Q Consensus 453 ~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~l 529 (784)
+....|.++ +..++-..|..++--+..... ++-+......+.+.+...|+.++|...|+...-.+ |+ +......
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~-lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Y 272 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTT-LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLY 272 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhcc-CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHH
Confidence 333444444 444555556665555544432 46666777888888899999999999999877653 22 2222223
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
.-.+.+.|+++....+...+.... .-....|-.-........+.+.|+.+-++.++.+ +.+...|-.-...+...++
T Consensus 273 a~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 273 AVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccc
Confidence 334567788888888888776431 1233344444444556678888888888877755 5556677777777888888
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 610 AGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 610 ~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
.++|.-.|.......+ -+...|.-|+..|...|+..||.-+-++..+
T Consensus 350 ~~~A~IaFR~Aq~Lap--~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAP--YRLEIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred hHHHHHHHHHHHhcch--hhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 8888888888776432 2677888889988888888888776655443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00042 Score=73.18 Aligned_cols=398 Identities=16% Similarity=0.122 Sum_probs=235.5
Q ss_pred HHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 003946 256 FNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSC 335 (784)
Q Consensus 256 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~ 335 (784)
|-.++..| ..+++..++++.+.+.+ +.+--..|.....-.+...|+.++|....+.-.+.+..+.. .|..+.-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v----CwHv~gl~ 84 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV----CWHVLGLL 84 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccch----hHHHHHHH
Confidence 44444444 55778888888887776 22222234333333456779999999988887776555554 79999888
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhh
Q 003946 336 HLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKF 415 (784)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (784)
+-...++++|+..|......+.-....+.++..+...
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q------------------------------------------- 121 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ------------------------------------------- 121 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------------------------------------------
Confidence 8888999999999988776431000000000000000
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHH
Q 003946 416 VALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHV 494 (784)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~l 494 (784)
.+.+....+.....++ ..| ....|..+..++--.|+...|..++++..+... ..|+...|...
T Consensus 122 ----------mRd~~~~~~tr~~LLq-----l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-~~~s~~~~e~s 185 (700)
T KOG1156|consen 122 ----------MRDYEGYLETRNQLLQ-----LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-TSPSKEDYEHS 185 (700)
T ss_pred ----------HHhhhhHHHHHHHHHH-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCHHHHHHH
Confidence 0000001111111111 233 447899999999999999999999999887652 35777766655
Q ss_pred HHHHH------HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 495 ITLCI------SLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSK 568 (784)
Q Consensus 495 i~~~~------~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 568 (784)
..-.- +.|.++.|.+.+..-... +.-....-..-...+.+.+++++|..++..+... .||..-|.-.+..+
T Consensus 186 e~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 186 ELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence 54433 457777777766655443 2222333345667788999999999999999877 57777766655544
Q ss_pred H-HcCChhHHH-HHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 003946 569 I-VQKDTPGAL-HLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLM 646 (784)
Q Consensus 569 ~-~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~ 646 (784)
. +--+.-+++ .+|....+.-. -....-..=+.......-.+...+++..+.+.+ + | .++..+...|-.-...
T Consensus 263 lgk~~d~~~~lk~ly~~ls~~y~--r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg-~-p--~vf~dl~SLyk~p~k~ 336 (700)
T KOG1156|consen 263 LGKIKDMLEALKALYAILSEKYP--RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG-V-P--SVFKDLRSLYKDPEKV 336 (700)
T ss_pred HHHHhhhHHHHHHHHHHHhhcCc--ccccchhccHHHhCcchhHHHHHHHHHHHhhcC-C-C--chhhhhHHHHhchhHh
Confidence 4 344444444 67766655421 100000111111111112223333444444433 2 2 2366666666544433
Q ss_pred HHHHHHHHHHHhC----C----------CCCCHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC-HHHHH
Q 003946 647 QDAEKALKRMRSL----G----------HLPNAQTF--HSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD-EELLD 709 (784)
Q Consensus 647 ~~A~~~~~~m~~~----g----------~~p~~~~~--~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~ 709 (784)
+-..++.-.+... | -.|....| ..+...+-+.| +++.|..+++.... ..|+ ++.|-
T Consensus 337 ~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g-~~~~A~~yId~AId------HTPTliEly~ 409 (700)
T KOG1156|consen 337 AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLG-DYEVALEYIDLAID------HTPTLIELYL 409 (700)
T ss_pred HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHhc------cCchHHHHHH
Confidence 3223333333221 1 14554444 45667788889 99999999999876 3444 45677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 710 SVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 710 ~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
+=.+.+..+|.+++|..++++..+.
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhc
Confidence 7779999999999999999999875
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.3e-05 Score=80.14 Aligned_cols=275 Identities=9% Similarity=-0.038 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGH-VITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
...|..+...+...|+.+.+...+.+..+... ..++...... ....+...|++++|..+++...+.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALA-ARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 35666677777778888887777777665442 1333322221 2234457899999999999988763 334445442
Q ss_pred HHHHHH----cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHH
Q 003946 530 LKAYIE----ANRPREVTALLRDARSAGIQLDA-SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC 604 (784)
Q Consensus 530 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~ 604 (784)
...+.. .+..+.+.+.+.. .....|+. .....+...+...|++++|...+++..+.. |.+...+..+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~ 158 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVL 158 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHH
Confidence 223333 3455555555544 11223443 344556677889999999999999999876 77777889999999
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHHc
Q 003946 605 AQNHEAGLMAKLLQEVKEGQRIDCGV--HDWNNVIHFFCKKRLMQDAEKALKRMRSLGH-LPNAQTF-H--SMVTGYAAI 678 (784)
Q Consensus 605 ~~~~~~~~a~~~~~~~~~~~~~~p~~--~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~-~--~ll~a~~~~ 678 (784)
...|++++|..+++......+..|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 99999999999999888765433443 3466788899999999999999999864322 1222211 1 233334444
Q ss_pred CCCHHHHHHHHHHHHhcccCC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 679 GGKYTEVTELWGEMKSFASST-SMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 679 g~~~~~a~~~~~~m~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
| ..+.+.+. +.+....... ..............++...|+.++|.++++.+...
T Consensus 239 g-~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 239 G-HVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred C-CCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4 43333332 2222210001 00112223336778888999999999999998763
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-05 Score=81.21 Aligned_cols=62 Identities=15% Similarity=-0.059 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHL 516 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 516 (784)
..|+.+...+...|++++|...|++..+.. +-+..+|..+..++...|++++|.+.|+...+
T Consensus 99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 99 DAYNYLGIYLTQAGNFDAAYEAFDSVLELD---PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444444444444444444444332 22233334444444444444444444444443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00011 Score=77.79 Aligned_cols=266 Identities=14% Similarity=-0.008 Sum_probs=132.8
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003946 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCIS----LGWLDQAHDLLDEMHLAGVRAS-SSVYASLLKAYI 534 (784)
Q Consensus 460 ~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~ 534 (784)
.+...|++++|.+.+++..... +.|...+.. ...+.. .+..+.+.+.+.. .....|+ ......+...+.
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY---PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 3445666667766666665543 333333331 112222 2333334333333 1111222 333344555666
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcH--HHHHHHHHHHHhcCcHHH
Q 003946 535 EANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGH--QEFEMLVKGCAQNHEAGL 612 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~~ll~~~~~~~~~~~ 612 (784)
..|++++|...+++..+.. +.+...+..+...+...|++++|...+++.......++.. ..|..+...+...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 6677777777777766553 2234555666666666777777777766665532111111 123345566666777777
Q ss_pred HHHHHHHHHhcCCCCCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHhCCC-CCCHHHHHHHHHHHHHcCCCHHHH
Q 003946 613 MAKLLQEVKEGQRIDCGVHDW-N--NVIHFFCKKRLMQDAEKA---LKRMRSLGH-LPNAQTFHSMVTGYAAIGGKYTEV 685 (784)
Q Consensus 613 a~~~~~~~~~~~~~~p~~~~y-~--~li~~~~~~g~~~~A~~~---~~~m~~~g~-~p~~~~~~~ll~a~~~~g~~~~~a 685 (784)
|..+++......+..+..... + .++.-+...|..+.+.+. ...-....- ............++...| +.+.|
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~a 283 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG-DKDAL 283 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC-CHHHH
Confidence 777777664332211111111 1 233333444432222222 111111100 111122224566677778 89999
Q ss_pred HHHHHHHHhcccC---CCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 686 TELWGEMKSFASS---TSMN-FDEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 686 ~~~~~~m~~~~~~---~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
..+++.+...... .+.. ..........-++...|++++|.+.+.+...
T Consensus 284 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 284 DKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999888764332 1111 1222333444556688999999999888764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00015 Score=79.87 Aligned_cols=584 Identities=10% Similarity=-0.039 Sum_probs=325.4
Q ss_pred chhhHHHHHHHhcccCCCCCc-hhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCcc
Q 003946 105 RYGDAWKLYEQHMQMDGFPRK-TLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVP 183 (784)
Q Consensus 105 ~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 183 (784)
+...|+..|=+..+.. |+. ..|..|-..|.. ..+..+|...|...++. .+ .+....-+....|++...++.
T Consensus 473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd---~~Dm~RA~kCf~KAFeL-Da--tdaeaaaa~adtyae~~~we~ 544 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRD---SDDMKRAKKCFDKAFEL-DA--TDAEAAAASADTYAEESTWEE 544 (1238)
T ss_pred hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHH---HHHHHHHHHHHHHHhcC-Cc--hhhhhHHHHHHHhhccccHHH
Confidence 3666777776666644 222 345555555643 45777788888887775 11 234445568889999999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHh
Q 003946 184 ASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGC 263 (784)
Q Consensus 184 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~ 263 (784)
|..+.-...+.. +.-...+|..-.+..-. .++...+|..-|+ .-- .--+.|...|..+..+|
T Consensus 545 a~~I~l~~~qka-~a~~~k~nW~~rG~yyL------ea~n~h~aV~~fQ--sAL---------R~dPkD~n~W~gLGeAY 606 (1238)
T KOG1127|consen 545 AFEICLRAAQKA-PAFACKENWVQRGPYYL------EAHNLHGAVCEFQ--SAL---------RTDPKDYNLWLGLGEAY 606 (1238)
T ss_pred HHHHHHHHhhhc-hHHHHHhhhhhcccccc------CccchhhHHHHHH--HHh---------cCCchhHHHHHHHHHHH
Confidence 998844333321 11234455555443322 1356666666665 221 11255777899999999
Q ss_pred hhcCChhHHHHHHHhhhhCCCCCChhHHHH--HHHHHHhcCCHHHHHHHHHHHHhhcCCChh---hHHHHHHHHHHHHHh
Q 003946 264 LLFETTRKAEQLLDIMPRIGVKADSNLLII--MAHIYERNGRREELRKLQRHIDEAVNLSDI---QFRQFYNCLLSCHLK 338 (784)
Q Consensus 264 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~--li~~~~~~g~~~~A~~l~~~~~~~~~~~~~---~~~~~~~~li~~~~~ 338 (784)
...|++..|+++|..... +.|+. +|.. ..-.-+..|.+.+|...+..+......... ....++-.+...+.-
T Consensus 607 ~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~ 683 (1238)
T KOG1127|consen 607 PESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAI 683 (1238)
T ss_pred HhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999999988876 34654 3332 223356778999999888876654211111 111123333334444
Q ss_pred cCChhHHHHHHHHHHHHH-----------HHHHHHHHHhchhhhhhccCCCCCCC---cccc-CCCCccccccccccccc
Q 003946 339 FGDLNSASKMVLEMLQRA-----------KEARNSLAAAMLPFNAVGVNNRTPSE---QNVN-CTNSVDLENSGIIENHI 403 (784)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~ 403 (784)
.|-..+|.+.|++-.+.- ...|-..-.++..+-.+.++ ..... ++.. -........... ..
T Consensus 684 ~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~-~vn~h~l~il~~q~e~~~~l~~~d~---l~ 759 (1238)
T KOG1127|consen 684 TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPS-IVNMHYLIILSKQLEKTGALKKNDL---LF 759 (1238)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhccc-chHHHHHHHHHHHHHhcccCcchhH---HH
Confidence 555556666655544432 23455555555555555433 11000 0000 000000000000 00
Q ss_pred cchhhhhhh-------hhhHHHHHHHHHHHHHHhhhHHHHHHHHhhh---cCCcCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003946 404 LSYEDFTKD-------RKFVALEAEVKRVLQTLLGMLQKQVELITTE---HGILQPTEKIYIKLVKAFLEAGKTKELTHF 473 (784)
Q Consensus 404 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 473 (784)
+.+.-+..+ ......+...-..+-...+.++..+..+... -....-+..+||.|--. ...|.+.-|...
T Consensus 760 Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHC 838 (1238)
T KOG1127|consen 760 LGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHC 838 (1238)
T ss_pred HHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhh
Confidence 000000000 0011111111111111111111111111110 01123355778776555 666888888888
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH--H-
Q 003946 474 LIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDA--R- 550 (784)
Q Consensus 474 ~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~- 550 (784)
|-+-.... +-...+|..+--.|.+..+++.|...|....... +.|...|-......-..|+.-++..+|..- .
T Consensus 839 fIks~~se---p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~ 914 (1238)
T KOG1127|consen 839 FIKSRFSE---PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELC 914 (1238)
T ss_pred hhhhhhcc---ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh
Confidence 88776665 5667788888888999999999999999988764 346777777666667788888888888762 1
Q ss_pred -HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc--------CCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003946 551 -SAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES--------KIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK 621 (784)
Q Consensus 551 -~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 621 (784)
..|-.|+..-|-....-...+|+.++-+...+.+... +..|+...+|.+......+.+.+..|.++..+..
T Consensus 915 ~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 915 SKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred ccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 2333566666666666666777766655444433221 1237778889999888888888888877766543
Q ss_pred hcCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 003946 622 EGQRIDCGVHDWNNVIH----FFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFAS 697 (784)
Q Consensus 622 ~~~~~~p~~~~y~~li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~ 697 (784)
.--..+-+...||.... .++..|.++.|..-+..... .-|...-..-+..+. .+ +++++.+.|++......
T Consensus 995 glLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~lFf-kn-df~~sl~~fe~aLsis~ 1069 (1238)
T KOG1127|consen 995 GLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTLFF-KN-DFFSSLEFFEQALSISN 1069 (1238)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHHHH-Hh-HHHHHHHHHHHHhhhcc
Confidence 22112235556775433 33445666655544432221 123333333333333 36 89999999999876421
Q ss_pred CCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 698 STSMNFD-EELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 698 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
-.-+ ......+......++.-+.|...+-+....
T Consensus 1070 ---se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1070 ---SESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred ---cccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 2223 233455555666777778888888777754
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00016 Score=76.58 Aligned_cols=224 Identities=14% Similarity=0.155 Sum_probs=133.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003946 458 VKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN 537 (784)
Q Consensus 458 i~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 537 (784)
|.+......+.+|+.+++.++.+. ..+. -|.-+...|+..|+++.|.++|-+. ..++--|.+|.+.|
T Consensus 739 ieaai~akew~kai~ildniqdqk---~~s~-yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK---TASG-YYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc---cccc-cchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccc
Confidence 444456667777888777776554 1222 2666777788888888888777542 23456677888888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHH
Q 003946 538 RPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLL 617 (784)
Q Consensus 538 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 617 (784)
++++|.++-++.. |.......|.+-..-+-++|++.+|.+++-.+.. |+ ..+..|.+.|..+...++.
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~------~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD------KAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch------HHHHHHHhhCcchHHHHHH
Confidence 8888877765543 2233445565556666677777777777654321 22 2356677777777777776
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 003946 618 QEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFAS 697 (784)
Q Consensus 618 ~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~ 697 (784)
++-.... -..|...+..-|-..|++..|++-|-+.- -|.+-++.|...+ .|++|.++.+.-
T Consensus 874 ~k~h~d~----l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~-lw~dayriakte----- 934 (1636)
T KOG3616|consen 874 EKHHGDH----LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASE-LWEDAYRIAKTE----- 934 (1636)
T ss_pred HHhChhh----hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhh-hHHHHHHHHhcc-----
Confidence 5543211 12345556667777788888877664433 2455566677777 777776654321
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003946 698 STSMNFDEELLDSVLYTFVRGGFFARANEVVAM 730 (784)
Q Consensus 698 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 730 (784)
| ..|..--...+.+-.-.| +.|.+++++
T Consensus 935 --g-g~n~~k~v~flwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 935 --G-GANAEKHVAFLWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred --c-cccHHHHHHHHHHHhhCc--HHHHHHHHh
Confidence 1 123333333333333333 677777765
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.7e-05 Score=70.01 Aligned_cols=195 Identities=11% Similarity=0.002 Sum_probs=102.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 494 VITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKD 573 (784)
Q Consensus 494 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 573 (784)
+--+|...|+...|..-+++.++.. +.+..+|..+...|-+.|+.+.|.+-|++..+.. +-+-...|..-..+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 3444555555555555555555543 1234455555555555555555555555544432 1122334444444555555
Q ss_pred hhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003946 574 TPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKAL 653 (784)
Q Consensus 574 ~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~ 653 (784)
+++|...|++......-+.-..+|..+..+..+.|+.+.|.+.|+...+.++-. ..+.-.+.....+.|++-.|..++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~--~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--PPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC--ChHHHHHHHHHHhcccchHHHHHH
Confidence 555555555555544333334455555555555555555555555555543321 223455556666666666676666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 654 KRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 654 ~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
++....+. ++....-..|.--...| +.+.+-++=..+.+
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~g-d~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLG-DRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHH
Confidence 66666644 66665555555555566 66666655555554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.7e-08 Score=61.50 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=21.1
Q ss_pred CCCCchhhHHHHHHHhhhcCChhHHHHHHHhh
Q 003946 248 AMKPNTNTFNIALAGCLLFETTRKAEQLLDIM 279 (784)
Q Consensus 248 ~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m 279 (784)
|+.||.+|||++|.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666666
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.58 E-value=7e-08 Score=61.10 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=12.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003946 519 VRASSSVYASLLKAYIEANRPREVTALLRDA 549 (784)
Q Consensus 519 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 549 (784)
+.||..+||+||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3344444444444444444444444444433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0014 Score=70.69 Aligned_cols=443 Identities=12% Similarity=0.005 Sum_probs=214.6
Q ss_pred CChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccch
Q 003946 88 RDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEP 167 (784)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 167 (784)
-++..|..+.-++.+.|++..+.+.|++....- .-....|..+-..+...|. -..|..+++..... .+.+.++.+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~---~s~Av~ll~~~~~~-~~~ps~~s~ 395 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGS---DSKAVNLLRESLKK-SEQPSDISV 395 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhcc---chHHHHHHHhhccc-ccCCCcchH
Confidence 478889999889999999999999999877632 2334455555555554443 23577777776655 444445666
Q ss_pred HHHHHHHHh-hCCCCccHHHHHHHHhh--cCCCC--ChHHHHHHHHHHhhcCC---CchhhHHHHHHhhhhhccCCcCcc
Q 003946 168 LIYLSLGLS-KCGLPVPASTILRKLVA--TEQYP--PVTAWSAILAHMSLTAP---GAYLAAELILEIGYLFQDGRVDPR 239 (784)
Q Consensus 168 ~~~li~~~~-~~g~~~~A~~~~~~m~~--~g~~p--~~~~~~~ll~~~~~~~~---~~~~~~~~~~~a~~~~~~~~m~~~ 239 (784)
+-..-..|. +-+.++++...-.+... .|..- ....|-.+--+|..... ........-.+++..++ +-.+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale--~av~- 472 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE--EAVQ- 472 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH--HHHh-
Confidence 655555555 44777777766666554 12111 22233333223322111 11111122233333333 2211
Q ss_pred ccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 003946 240 KKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVN 319 (784)
Q Consensus 240 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 319 (784)
+++..|+..-|-++= |+-.++.+.|.+..++..+.+-.-+...|..+.-.+.-.+++.+|..+.+......+
T Consensus 473 ------~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 473 ------FDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred ------cCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 022344444333332 444567777777777776654445566666666666667777777777666554322
Q ss_pred CChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccc
Q 003946 320 LSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGII 399 (784)
Q Consensus 320 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (784)
.+.. ....=|..-...++.++|+.....+..- |..........+.
T Consensus 545 ~N~~----l~~~~~~i~~~~~~~e~~l~t~~~~L~~----we~~~~~q~~~~~--------------------------- 589 (799)
T KOG4162|consen 545 DNHV----LMDGKIHIELTFNDREEALDTCIHKLAL----WEAEYGVQQTLDE--------------------------- 589 (799)
T ss_pred hhhh----hchhhhhhhhhcccHHHHHHHHHHHHHH----HHhhhhHhhhhhh---------------------------
Confidence 2211 0111122223356666666666555541 1100000000000
Q ss_pred cccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003946 400 ENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEK 479 (784)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 479 (784)
.. ....+.+.. .......-.+.++..+..-... +.+.+..-.. +.+
T Consensus 590 -----------------------------g~-~~~lk~~l~-la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~-Lp~ 635 (799)
T KOG4162|consen 590 -----------------------------GK-LLRLKAGLH-LALSQPTDAISTSRYLSSLVAS--QLKSAGSELK-LPS 635 (799)
T ss_pred -----------------------------hh-hhhhhcccc-cCcccccccchhhHHHHHHHHh--hhhhcccccc-cCc
Confidence 00 000000000 0000000111222222222211 1111100000 221
Q ss_pred cCCCCC--CCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003946 480 ENLQVS--HDD------AALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARS 551 (784)
Q Consensus 480 ~~~~~~--p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 551 (784)
.. +. |+. ..|......+.+.++.++|...+.+..... +.....|......+...|+.++|.+.|.....
T Consensus 636 s~--~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 636 ST--VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred cc--ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 11 12 221 123344455556666666665555555442 22445555555556666666777666666654
Q ss_pred cCCCC-CHHHHHHHHHHHHHcCChhHHHH--HHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003946 552 AGIQL-DASCYEALLQSKIVQKDTPGALH--LFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 552 ~g~~p-~~~t~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 622 (784)
. .| ++.+..++...+.+.|+..-|.. ++.++.+.+ |.++..|-.+...+-+.|+.+.|-+.|+...+
T Consensus 713 l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 713 L--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred c--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 4 33 33455666666666666655555 666666654 66666666666666666766666666665544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00062 Score=81.95 Aligned_cols=275 Identities=12% Similarity=0.012 Sum_probs=180.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHHHH
Q 003946 458 VKAFLEAGKTKELTHFLIKAEKENLQVSHDD----AALGHVITLCISLGWLDQAHDLLDEMHLAGV---RA--SSSVYAS 528 (784)
Q Consensus 458 i~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~--~~~~~~~ 528 (784)
-..+...|++++|...+++...... ..+. ...+.+...+...|++++|...+.+.....- .+ -..+...
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELP--LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 3455678999999999998765321 1221 2345556667789999999999988774311 11 1234556
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC--C-CCCcHHHHH
Q 003946 529 LLKAYIEANRPREVTALLRDARS----AGIQ--L-DASCYEALLQSKIVQKDTPGALHLFKEMKESK--I-PRSGHQEFE 598 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~----~g~~--p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~~~~~~~~~ 598 (784)
+...+...|++++|...+++... .|.. + ....+..+...+...|++++|...+.+..... . .......+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 67778889999999999887654 2211 1 22344555566777899999999988875531 1 112233455
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHH
Q 003946 599 MLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDW-----NNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA---QTFHS 670 (784)
Q Consensus 599 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ 670 (784)
.+.......|+.+.|...++..............+ ...+..+...|+.+.|.+.+............ ..+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 56667888999999999988775421111111111 11234556689999999998776542211111 11345
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003946 671 MVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD-EELLDSVLYTFVRGGFFARANEVVAMMEEGK 735 (784)
Q Consensus 671 ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 735 (784)
+..++...| ++++|...+++........+..++ ..+...+..+|.+.|+.++|.+.+.+..+..
T Consensus 697 ~a~~~~~~g-~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 697 IARAQILLG-QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 666788889 999999999988775444444433 3457778889999999999999999998753
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00026 Score=76.21 Aligned_cols=361 Identities=12% Similarity=0.078 Sum_probs=194.7
Q ss_pred ccchHHHHHH--HHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccc
Q 003946 164 EKEPLIYLSL--GLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKK 241 (784)
Q Consensus 164 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~ 241 (784)
++.+--.+++ .|.--|+.+.|.+-.+.+. +...|..|-+.+.+. .+++-|.-.+. .|..++.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT--------~RLDVAkVClG--hm~~aRg 788 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKT--------RRLDVAKVCLG--HMKNARG 788 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhh--------ccccHHHHhhh--hhhhhhh
Confidence 4444444544 4667788888887777765 556787777777765 33333333333 3322111
Q ss_pred ccccccC-CCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 003946 242 CNAPLIA-MKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNL 320 (784)
Q Consensus 242 ~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 320 (784)
....-.. -.|+ .+=.-+.......|..++|+.+|++-++.. .|=..|-..|.+++|.++-+.-.+-...
T Consensus 789 aRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr 858 (1416)
T KOG3617|consen 789 ARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLR 858 (1416)
T ss_pred HHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehh
Confidence 0000000 1222 111112222347799999999999887643 3334578889999998886553322222
Q ss_pred ChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccc
Q 003946 321 SDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIE 400 (784)
Q Consensus 321 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (784)
+ +|-.-..-+-..++.+.|++.|++-...... .+..+.+
T Consensus 859 ~------Tyy~yA~~Lear~Di~~AleyyEK~~~hafe----------v~rmL~e------------------------- 897 (1416)
T KOG3617|consen 859 N------TYYNYAKYLEARRDIEAALEYYEKAGVHAFE----------VFRMLKE------------------------- 897 (1416)
T ss_pred h------hHHHHHHHHHhhccHHHHHHHHHhcCChHHH----------HHHHHHh-------------------------
Confidence 2 4666666666778899999988765432110 0000000
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003946 401 NHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKE 480 (784)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 480 (784)
+ ....+..+. -..|...|.-....+-..|+.+.|+.+|...+.
T Consensus 898 -----~------------p~~~e~Yv~-------------------~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 898 -----Y------------PKQIEQYVR-------------------RKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred -----C------------hHHHHHHHH-------------------hccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 0 000001111 133445555555566678899999998887642
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--C----
Q 003946 481 NLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAG--I---- 554 (784)
Q Consensus 481 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---- 554 (784)
|-++++..|-.|+.++|-++-++ .| |....-.|...|-..|++.+|..+|-+..... +
T Consensus 941 ----------~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcK 1004 (1416)
T KOG3617|consen 941 ----------YFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCK 1004 (1416)
T ss_pred ----------hhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777888999998877654 22 56667778889999999999988887764210 0
Q ss_pred --CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHH---------HHHHhc
Q 003946 555 --QLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLL---------QEVKEG 623 (784)
Q Consensus 555 --~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~---------~~~~~~ 623 (784)
..+...||.-+ .....+.-.|-.+|++. |. -+.-.+..|.+.|.+..|+++- +-+.+.
T Consensus 1005 End~~d~L~nlal--~s~~~d~v~aArYyEe~---g~------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D 1073 (1416)
T KOG3617|consen 1005 ENDMKDRLANLAL--MSGGSDLVSAARYYEEL---GG------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD 1073 (1416)
T ss_pred hcCHHHHHHHHHh--hcCchhHHHHHHHHHHc---ch------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh
Confidence 01111122111 11111233344444432 11 2233344566777766666552 222222
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003946 624 QRIDCGVHDWNNVIHFFCKKRLMQDAEKALKR 655 (784)
Q Consensus 624 ~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 655 (784)
-....|....+.-.+-++...++++|.+++-.
T Consensus 1074 Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11223445555555556666666666665543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.2e-05 Score=72.52 Aligned_cols=55 Identities=13% Similarity=0.110 Sum_probs=28.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003946 500 SLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQ 555 (784)
Q Consensus 500 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 555 (784)
+.|+++.|.+-|+...+-+---....||.-+..| +.|+++.|++...++.++|++
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 5566666666665555432222334555444333 345556666666666655543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0023 Score=67.01 Aligned_cols=214 Identities=17% Similarity=0.156 Sum_probs=112.7
Q ss_pred CCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHH--HHHHHHhccChhhHHHHHHHHHHHHHhcccccCc
Q 003946 87 ARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNK--ILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLE 164 (784)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~--ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 164 (784)
+.++..+..-+-++...+++++|+.+.+.-.. ..+++. +=++||.. +....++|+..+...-. .+
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y-rlnk~Dealk~~~~~~~------~~ 109 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY-RLNKLDEALKTLKGLDR------LD 109 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH-HcccHHHHHHHHhcccc------cc
Confidence 44556666666667777777777766654221 111111 34555543 24455555555552111 12
Q ss_pred cchHHHHHHHHhhCCCCccHHHHHHHHhhcCCC-CChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccc
Q 003946 165 KEPLIYLSLGLSKCGLPVPASTILRKLVATEQY-PPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCN 243 (784)
Q Consensus 165 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~ 243 (784)
+.....-...+-+.|++++|..+++.+.+.+.. -|..--..++.+-. ...+. +.+ ...
T Consensus 110 ~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a------------~l~~~-~~q--~v~------ 168 (652)
T KOG2376|consen 110 DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA------------ALQVQ-LLQ--SVP------ 168 (652)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH------------hhhHH-HHH--hcc------
Confidence 223334455667788888888888888655321 11111122222111 11111 122 111
Q ss_pred ccccCCCCc---hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCC-------------CCCh-hHHHHHHHHHHhcCCHHH
Q 003946 244 APLIAMKPN---TNTFNIALAGCLLFETTRKAEQLLDIMPRIGV-------------KADS-NLLIIMAHIYERNGRREE 306 (784)
Q Consensus 244 ~~~~~~~p~---~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~-------------~pd~-~~~~~li~~~~~~g~~~~ 306 (784)
..|+ ...||+. ..++..|++.+|+++++...+.+. .-+. .....|.-.+-..|+.++
T Consensus 169 -----~v~e~syel~yN~A-c~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 169 -----EVPEDSYELLYNTA-CILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred -----CCCcchHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 1231 1234432 245578999999999988732211 1111 233456666788899999
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcC
Q 003946 307 LRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFG 340 (784)
Q Consensus 307 A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 340 (784)
|..++..+.+.+.++.....+.-|.|+.+-....
T Consensus 243 a~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~ 276 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQN 276 (652)
T ss_pred HHHHHHHHHHhcCCCchHHHHHhcchhhhccccc
Confidence 9999999988876666544445566665444333
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.0012 Score=70.37 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAY 533 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 533 (784)
|..+..-|+..|+++.|.++|.+.. . ++-.|..|.+.|+++.|.++-.+.. |....+..|-+-..-+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~---------~--~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD---------L--FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDL 834 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc---------h--hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhH
Confidence 4455566777777777777765421 1 3445667777777777776655543 2233455555555566
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHH
Q 003946 534 IEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLM 613 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 613 (784)
-+.|++.+|++++-.+. .||. -|..|-+.|..+..+++.++-.-. .-+.|..-+..-+...|++..|
T Consensus 835 dehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d----~l~dt~~~f~~e~e~~g~lkaa 901 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD----HLHDTHKHFAKELEAEGDLKAA 901 (1636)
T ss_pred HhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh----hhhHHHHHHHHHHHhccChhHH
Confidence 66777777777665554 4543 345666667666666665543211 1133445555566666677676
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003946 614 AKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALK 654 (784)
Q Consensus 614 ~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~ 654 (784)
+.-|-+... |.+-+.+|-..+.+++|.++-+
T Consensus 902 e~~flea~d----------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 902 EEHFLEAGD----------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHh
Confidence 666544432 5566666666666666665543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0026 Score=70.49 Aligned_cols=450 Identities=12% Similarity=0.132 Sum_probs=279.1
Q ss_pred HHHHHHhccchhhHHHHHHHhccc----CCCCCchhHHHHHHHHHhccChhhHHHHH--------HHHHHHHHhcccccC
Q 003946 96 EIENAINEHRYGDAWKLYEQHMQM----DGFPRKTLVNKILTSFVESLDSKWLEKAY--------GLVEQAFEEGKQILL 163 (784)
Q Consensus 96 li~~~~~~~~~~~A~~l~~~m~~~----~~~p~~~~~~~ll~~~~~~~~~~~~~~a~--------~~~~~~~~~~~~~~~ 163 (784)
.+.-||..+++.-|.-.|++-.-. .+......|...-+.+.+..+.+.+.+++ .++++.+...-+...
T Consensus 903 vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~ 982 (1666)
T KOG0985|consen 903 VVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQ 982 (1666)
T ss_pred HHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccC
Confidence 344555555555555444432110 01112223333333334444556666655 456666665555667
Q ss_pred ccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHH-----HHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCc
Q 003946 164 EKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTA-----WSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDP 238 (784)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-----~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~ 238 (784)
+|+..+..+.++.-++-+.+-.++++++.- .|++++ -|.||-.-.+ .+.....+..+ +++.
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL---~~S~Fse~~nLQnLLiLtAik---------ad~trVm~YI~--rLdn 1048 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVL---DNSVFSENRNLQNLLILTAIK---------ADRTRVMEYIN--RLDN 1048 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhc---CCcccccchhhhhhHHHHHhh---------cChHHHHHHHH--Hhcc
Confidence 888888889999999999999999998873 345554 3334332222 12223333333 3321
Q ss_pred cccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 003946 239 RKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAV 318 (784)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~ 318 (784)
=-.|++ -..+...+-+++|..+|+..- .+....+.||. ..+.++.|.+.-+...
T Consensus 1049 ---------yDa~~i------a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n--- 1102 (1666)
T KOG0985|consen 1049 ---------YDAPDI------AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN--- 1102 (1666)
T ss_pred ---------CCchhH------HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC---
Confidence 013332 234456677889988887643 34455555543 3466777766544432
Q ss_pred CCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccc
Q 003946 319 NLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGI 398 (784)
Q Consensus 319 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (784)
.|. +|..+..+-.+.|.+.+|++-|-+
T Consensus 1103 ~p~------vWsqlakAQL~~~~v~dAieSyik----------------------------------------------- 1129 (1666)
T KOG0985|consen 1103 EPA------VWSQLAKAQLQGGLVKDAIESYIK----------------------------------------------- 1129 (1666)
T ss_pred ChH------HHHHHHHHHHhcCchHHHHHHHHh-----------------------------------------------
Confidence 232 699998888888888888775421
Q ss_pred ccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 399 IENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAE 478 (784)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 478 (784)
.-|+..|.-+|....+.|.+++..+.+...+
T Consensus 1130 -------------------------------------------------adDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1130 -------------------------------------------------ADDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred -------------------------------------------------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3355678899999999999999988887777
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 003946 479 KENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDA 558 (784)
Q Consensus 479 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 558 (784)
+.. -.|... ..||-+|++.+++.+-+++. ..||......+-+-|...|.++.|.-+|...
T Consensus 1161 kk~--~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------- 1220 (1666)
T KOG0985|consen 1161 KKV--REPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------- 1220 (1666)
T ss_pred Hhh--cCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------
Confidence 666 255553 46899999999887765554 2478877788888888889998888777644
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIH 638 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 638 (784)
.-|.-|...+...|+++.|.+.-++ .++..||.-+-.+|...+.+..|.- ...+ +.....-..-+|.
T Consensus 1221 SN~a~La~TLV~LgeyQ~AVD~aRK-------Ans~ktWK~VcfaCvd~~EFrlAQi-----CGL~-iivhadeLeeli~ 1287 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVDAARK-------ANSTKTWKEVCFACVDKEEFRLAQI-----CGLN-IIVHADELEELIE 1287 (1666)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh-------ccchhHHHHHHHHHhchhhhhHHHh-----cCce-EEEehHhHHHHHH
Confidence 4477777788888888888776654 3345688888888888776655532 1111 1112223567888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCC------CCHHHHHHHH
Q 003946 639 FFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMN------FDEELLDSVL 712 (784)
Q Consensus 639 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~------p~~~~~~~li 712 (784)
-|-..|-+++-+.+++.-+.. -+.....|+.|.--|++-. .++..+.++-.-.+ -+++ -....|+-++
T Consensus 1288 ~Yq~rGyFeElIsl~Ea~LGL-ERAHMgmfTELaiLYskyk--p~km~EHl~LFwsR---vNipKviRA~eqahlW~Elv 1361 (1666)
T KOG0985|consen 1288 YYQDRGYFEELISLLEAGLGL-ERAHMGMFTELAILYSKYK--PEKMMEHLKLFWSR---VNIPKVIRAAEQAHLWSELV 1361 (1666)
T ss_pred HHHhcCcHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHHH
Confidence 888899998888888765432 1234556777666666643 55544444333221 1111 1244677888
Q ss_pred HHHHhcCChHHHHH
Q 003946 713 YTFVRGGFFARANE 726 (784)
Q Consensus 713 ~~~~~~g~~~~A~~ 726 (784)
..|.+-..++.|.-
T Consensus 1362 fLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1362 FLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHhhhhhhHHHH
Confidence 88887777776643
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.1e-05 Score=70.64 Aligned_cols=198 Identities=13% Similarity=0.041 Sum_probs=127.4
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 003946 255 TFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLS 334 (784)
Q Consensus 255 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~ 334 (784)
-+++++.-+.+..++..|++++..-.+.. +.+....+.|..+|-...++..|...++++... .|....+ ----..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-~P~~~qY---rlY~AQ 86 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-HPELEQY---RLYQAQ 86 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHH---HHHHHH
Confidence 36677777888999999999998877654 226677888888999999999999999998874 3333321 112235
Q ss_pred HHHhcCChhHHHHHHHHHHHHHH-HHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhh
Q 003946 335 CHLKFGDLNSASKMVLEMLQRAK-EARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDR 413 (784)
Q Consensus 335 ~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (784)
.+.+.+.+..|+++...|.+..- ....--+.+...... .. +
T Consensus 87 SLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse-----~D-----------------------------l---- 128 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSE-----GD-----------------------------L---- 128 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc-----cc-----------------------------C----
Confidence 56778899999999988877321 000000000000000 00 0
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 003946 414 KFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGH 493 (784)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~ 493 (784)
...+..++.. . -.-+..+.+......-+.|+++.|.+-|....+-++ ..|- ..|+.
T Consensus 129 ------~g~rsLveQl---------------p-~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG-yqpl-lAYni 184 (459)
T KOG4340|consen 129 ------PGSRSLVEQL---------------P-SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG-YQPL-LAYNL 184 (459)
T ss_pred ------cchHHHHHhc---------------c-CCCccchhccchheeeccccHHHHHHHHHHHHhhcC-CCch-hHHHH
Confidence 0001111100 0 012344555555556789999999999999887664 4554 45886
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003946 494 VITLCISLGWLDQAHDLLDEMHLAGVR 520 (784)
Q Consensus 494 li~~~~~~g~~~~a~~~~~~m~~~g~~ 520 (784)
.+..| +.|++..|.+...++.++|++
T Consensus 185 ALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 185 ALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 66555 568999999999999999975
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.6e-06 Score=84.37 Aligned_cols=249 Identities=12% Similarity=0.044 Sum_probs=131.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 003946 461 FLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPR 540 (784)
Q Consensus 461 ~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 540 (784)
+--.|++..++.-.+ ..... -..+..+..-+.+++...|+++.+ ..++.... .|.......+...+....+-+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~--~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFS--PENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTST--CHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHhhhHHHHHHHhh-ccCCC--chhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 334566766665444 22111 022233344455777777776543 33443333 555555554444443333344
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003946 541 EVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQE 619 (784)
Q Consensus 541 ~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 619 (784)
.+..-+++.......+ +..........+...|++++|+++++.- .+.......+..|.+.++++.|.+.++.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444333332222221 2222222223344567777777776542 2345666677777777777777777777
Q ss_pred HHhcCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 003946 620 VKEGQRIDCGVH---DWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFA 696 (784)
Q Consensus 620 ~~~~~~~~p~~~---~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~ 696 (784)
|.+.+ .|.. ...+.+..+...+.+.+|..+|+++.+. ..+++.+.+.+..+....| ++++|..++.+....
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~-~~~eAe~~L~~al~~- 230 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLG-HYEEAEELLEEALEK- 230 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT--HHHHHHHHHHHCCC-
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHh-
Confidence 77643 2432 2233333333334577788888887665 5567777777777777777 888888777776541
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 003946 697 SSTSMNFDEELLDSVLYTFVRGGFF-ARANEVVAMMEE 733 (784)
Q Consensus 697 ~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 733 (784)
-+-++.+...++......|+. +.+.+.+.++++
T Consensus 231 ----~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 231 ----DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred ----ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 122455666666666666766 566677777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.8e-06 Score=82.36 Aligned_cols=235 Identities=15% Similarity=0.137 Sum_probs=150.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 003946 496 TLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTP 575 (784)
Q Consensus 496 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 575 (784)
+-+.-.|++..+..-.+ .....-..+.....-+.++|...|+.+.+. .++.... .|.......+...+....+-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33445688888876555 222221223445566778888889877544 4444433 677666655555444434556
Q ss_pred HHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003946 576 GALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKR 655 (784)
Q Consensus 576 ~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 655 (784)
.++.-+++.......+.+..........+...|++++|.+++... .+.......+..|.+.++++.|.+.++.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666655444433344444444445566789999999888654 2567778899999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 656 MRSLGHLPNAQTFHSMVTGYAA---IGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 656 m~~~g~~p~~~~~~~ll~a~~~---~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
|.+. ..|.. ..-+..++.. .|+.+.+|..+|+++.+ ...+++.+.+.+..++...|++++|.+++.+..
T Consensus 157 ~~~~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~-----~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 157 MQQI--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSD-----KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHCC--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-----CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHhc--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHh-----ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9974 34543 3444444433 23369999999999976 456789999999999999999999999999987
Q ss_pred hCCCCCCHHHHHHHH-HHHh
Q 003946 733 EGKMFIDKYKYRTLF-LKYH 751 (784)
Q Consensus 733 ~~g~~pd~~~~~~li-~~~~ 751 (784)
+.+ +-|..+...++ +..+
T Consensus 229 ~~~-~~~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 229 EKD-PNDPDTLANLIVCSLH 247 (290)
T ss_dssp CC--CCHHHHHHHHHHHHHH
T ss_pred Hhc-cCCHHHHHHHHHHHHH
Confidence 653 23444444555 4444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0063 Score=67.58 Aligned_cols=216 Identities=13% Similarity=0.117 Sum_probs=116.4
Q ss_pred ccccccccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCC--CCchhHHHHHHHHHhccChhhHHHHHHHHHHH
Q 003946 77 SSMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGF--PRKTLVNKILTSFVESLDSKWLEKAYGLVEQA 154 (784)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 154 (784)
+.+..+..+...||..-..-++++--.+-+.+.+++++++.-.... -+...-|.|+-...+. +. .++.+.+.++
T Consensus 971 DqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~---trVm~YI~rL 1046 (1666)
T KOG0985|consen 971 DQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DR---TRVMEYINRL 1046 (1666)
T ss_pred HHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-Ch---HHHHHHHHHh
Confidence 3344444455555555555566666666666666666665432111 1111223333322221 11 1233333332
Q ss_pred HHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccC
Q 003946 155 FEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDG 234 (784)
Q Consensus 155 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~ 234 (784)
-.- --|+ +.......+-+++|..+|+.--. +....+.||.- .+.++.|.+.-+
T Consensus 1047 dny-----Da~~----ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie~-----------i~~ldRA~efAe-- 1099 (1666)
T KOG0985|consen 1047 DNY-----DAPD----IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIEN-----------IGSLDRAYEFAE-- 1099 (1666)
T ss_pred ccC-----Cchh----HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHHH-----------hhhHHHHHHHHH--
Confidence 110 1111 22223344556666666665432 44444444431 245555555544
Q ss_pred CcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003946 235 RVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHI 314 (784)
Q Consensus 235 ~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~ 314 (784)
+.. + ...|..+-.+-.+.|...+|++-|-.. -|+..|.-+++...+.|.+++-.+.+...
T Consensus 1100 ~~n------------~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1100 RCN------------E--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred hhC------------C--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 321 2 345888888888888888887765321 36677888888888888888888877666
Q ss_pred Hhh-cCCChhhHHHHHHHHHHHHHhcCChhHHHHHH
Q 003946 315 DEA-VNLSDIQFRQFYNCLLSCHLKFGDLNSASKMV 349 (784)
Q Consensus 315 ~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 349 (784)
.+. ..+. +-+.||-+|++.+++.+-.+++
T Consensus 1160 Rkk~~E~~------id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1160 RKKVREPY------IDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHhhcCcc------chHHHHHHHHHhchHHHHHHHh
Confidence 655 2333 3577888888888877665543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0021 Score=62.65 Aligned_cols=212 Identities=15% Similarity=0.058 Sum_probs=135.3
Q ss_pred ChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchH
Q 003946 89 DPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPL 168 (784)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 168 (784)
++.-..-+-+.+...|++.+|+.-|...++. |+..|.++.+.-.-.--.++.+.|+.-+.++++. .|+.+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel------KpDF~ 106 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL------KPDFM 106 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc------CccHH
Confidence 4455556777888889999999999988873 3334433333221111122233466666666665 56665
Q ss_pred HHHHH---HHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccccc
Q 003946 169 IYLSL---GLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAP 245 (784)
Q Consensus 169 ~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~ 245 (784)
..-+. .+.+.|.++.|..-|+..++.. |+. |...+|.+-+. .+.+
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~---------------------~~~~eaqskl~--~~~e------- 154 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQHE--PSN---------------------GLVLEAQSKLA--LIQE------- 154 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCc---------------------chhHHHHHHHH--hHHH-------
Confidence 55333 5778899999999998888652 221 12222221111 1100
Q ss_pred ccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhH
Q 003946 246 LIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQF 325 (784)
Q Consensus 246 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~ 325 (784)
.......+..+...|+...|+....++++.. +.|...|..-..+|...|+...|..=+....+....++.
T Consensus 155 -------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe-- 224 (504)
T KOG0624|consen 155 -------HWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE-- 224 (504)
T ss_pred -------HHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH--
Confidence 1112334555667889999999999988864 568888888888999999999988777777665444444
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003946 326 RQFYNCLLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 326 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
..-.+-..+...|+.+.++...++.+.
T Consensus 225 --~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 225 --GHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred --HHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 355566677788888888888877776
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0025 Score=76.80 Aligned_cols=316 Identities=13% Similarity=0.036 Sum_probs=189.3
Q ss_pred HHHhhhcCChhHHHHHHHhhhhCC--C----CCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChh-hHHHHHH
Q 003946 260 LAGCLLFETTRKAEQLLDIMPRIG--V----KADS--NLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDI-QFRQFYN 330 (784)
Q Consensus 260 l~~~~~~g~~~~A~~l~~~m~~~g--~----~pd~--~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~-~~~~~~~ 330 (784)
...+...|++++|..++......- . .+.. .....+...+...|++++|...++........... ......+
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 334456788999888887765321 0 1111 12222334566789999999988887653111111 1112456
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhh
Q 003946 331 CLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFT 410 (784)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (784)
.+...+...|++++|...+++...... .
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~-----------------------------------------------~----- 523 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMAR-----------------------------------------------Q----- 523 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHh-----------------------------------------------h-----
Confidence 666777889999999999888776321 0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCC
Q 003946 411 KDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKE----NLQVSH 486 (784)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~p 486 (784)
.+...+...++..+...+...|++++|...+.+.... +.+..+
T Consensus 524 ---------------------------------~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 524 ---------------------------------HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred ---------------------------------hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 0000111234556677788999999999988876542 210011
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHH
Q 003946 487 -DDAALGHVITLCISLGWLDQAHDLLDEMHLAG--VRA--SSSVYASLLKAYIEANRPREVTALLRDARSAGIQL-DASC 560 (784)
Q Consensus 487 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t 560 (784)
....+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+.++|...+++.....-.. ....
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 23334445566677899999999988876431 112 23444556667788999999999988875421111 1111
Q ss_pred H-----HHHHHHHHHcCChhHHHHHHHHhHhcCCCCC--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC---CCCC-C
Q 003946 561 Y-----EALLQSKIVQKDTPGALHLFKEMKESKIPRS--GHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ---RIDC-G 629 (784)
Q Consensus 561 ~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~ 629 (784)
+ ...+..+...|+.+.|...+..........+ ....+..+..++...|+.++|...++...... +..+ .
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 1 1122344557888999888776543221111 01113456667788888888888887765421 1111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003946 630 VHDWNNVIHFFCKKRLMQDAEKALKRMRSLG 660 (784)
Q Consensus 630 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g 660 (784)
..+...+..+|.+.|+.++|...+.+..+..
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3456667777888899999999888888753
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00041 Score=79.27 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR-ASSSVYASLLKA 532 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~ 532 (784)
|..|...|.+.+.+++|.++|+.|.+.- .-....|...+..+.+..+-+.|..++.+..+.=.+ -.+....-.+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF---~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF---GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh---cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 4444444444444445555554444432 223333444444444444444444444444432100 012222333333
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC
Q 003946 533 YIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKI 589 (784)
Q Consensus 533 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 589 (784)
-.+.|+.+.+..+|+.....- +.-.-.|+..|..=.++|+.+.+..+|++....++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 344444454444554444331 11233444555544455555555555555444444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00034 Score=74.92 Aligned_cols=239 Identities=12% Similarity=0.083 Sum_probs=143.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 003946 285 KADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLA 364 (784)
Q Consensus 285 ~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 364 (784)
+|--..-..+...+.+.|-...|..+|+.+.. |.-+|.+|+..|+..+|..+..+-.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem------------w~~vi~CY~~lg~~~kaeei~~q~le---------- 452 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM------------WDPVILCYLLLGQHGKAEEINRQELE---------- 452 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH------------HHHHHHHHHHhcccchHHHHHHHHhc----------
Confidence 34444555666777777888888887777653 77777888888877777777665554
Q ss_pred HhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q 003946 365 AAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEH 444 (784)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (784)
T Consensus 453 -------------------------------------------------------------------------------- 452 (777)
T KOG1128|consen 453 -------------------------------------------------------------------------------- 452 (777)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003946 445 GILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSS 524 (784)
Q Consensus 445 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 524 (784)
-+||+..|..+.+......-+++|.++++....+. -..+-....+.++++++.+.|+.-.+.. +.-..
T Consensus 453 --k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA---------~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~ 520 (777)
T KOG1128|consen 453 --KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARA---------QRSLALLILSNKDFSEADKHLERSLEIN-PLQLG 520 (777)
T ss_pred --CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHH---------HHhhccccccchhHHHHHHHHHHHhhcC-ccchh
Confidence 25666666666666666666667777666543221 0001111122566777777666655543 22455
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDARSAGIQLD-ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG 603 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~ 603 (784)
+|-.+-.+..+.++...|.+.|..-... .|| ...||.+-.+|.+.++-.+|...+++..+.+..+ ...|...+-.
T Consensus 521 ~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~--w~iWENymlv 596 (777)
T KOG1128|consen 521 TWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH--WQIWENYMLV 596 (777)
T ss_pred HHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC--Ceeeechhhh
Confidence 6666666666777777777777666543 443 3467777777777777777777777776665322 3355555666
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 003946 604 CAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFC 641 (784)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~ 641 (784)
..+.|.+++|.+.+..+........|..+-..++....
T Consensus 597 svdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 597 SVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 66677777777766665543332234444444444333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00013 Score=75.86 Aligned_cols=257 Identities=11% Similarity=0.025 Sum_probs=189.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 003946 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRP 539 (784)
Q Consensus 460 ~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 539 (784)
-+.+.|++.+|.-.|+...+.+ +-+...|--|.......++-..|+..+.+..+... -|....-.|.-.|...|.-
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhH
Confidence 3568999999999999999887 67778899999999999999999999999988753 3688888899999999999
Q ss_pred HHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHH
Q 003946 540 REVTALLRDARSAGIQ--------LDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611 (784)
Q Consensus 540 ~~A~~~~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 611 (784)
.+|...++.-.....+ ++...-+. ..+.....+....++|-++....-...++.....|.-.|.-.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999887543210 00000000 1111222334455566665554422356778888888899999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003946 612 LMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYTEVTELWG 690 (784)
Q Consensus 612 ~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~ 690 (784)
+|...|+......+ -|...||-|...++...+.++|+..|.+.++ ++|+ +....-|.-+|...| .+++|...|-
T Consensus 448 raiDcf~~AL~v~P--nd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG-~ykEA~~hlL 522 (579)
T KOG1125|consen 448 RAVDCFEAALQVKP--NDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLG-AYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHhcCC--chHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhh-hHHHHHHHHH
Confidence 99999999888543 2677899999999999999999999999998 5786 445556677888889 9999998887
Q ss_pred HHHhcccC-----CCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003946 691 EMKSFASS-----TSMNFDEELLDSVLYTFVRGGFFARANEV 727 (784)
Q Consensus 691 ~m~~~~~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~l 727 (784)
....+.++ ....++..+|.+|=.++.-.++.|-+.+.
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 77665433 11223456788888888888877655444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0013 Score=66.90 Aligned_cols=182 Identities=8% Similarity=0.029 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 452 KIYIKLVKAFLEAG-KTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWL--DQAHDLLDEMHLAGVRASSSVYAS 528 (784)
Q Consensus 452 ~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~~~~~~~~~ 528 (784)
.+|+.--..+...| ++++++..++++.+.. +-+..+|+.--..+.+.|+. +++..+++.+.+... -|..+|+.
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~n---pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~ 147 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAEDN---PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSH 147 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHHC---CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHH
Confidence 45555555555556 5678888888887765 44555566555555555652 567777777776653 37778887
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCh----hHHHHHHHHhHhcCCCCCcHHHHHHHH
Q 003946 529 LLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQ---KDT----PGALHLFKEMKESKIPRSGHQEFEMLV 601 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~----~~A~~~~~~m~~~~~~~~~~~~~~~ll 601 (784)
....+.+.|+++++++.++++.+.+. -|...|+.....+.+. |.. +++++...+++... |.+...|+.+.
T Consensus 148 R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~ 224 (320)
T PLN02789 148 RQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN--PRNESPWRYLR 224 (320)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC--CCCcCHHHHHH
Confidence 77777777888888888888877653 3566666655554443 212 34555555555543 56666666666
Q ss_pred HHHHhc----CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 003946 602 KGCAQN----HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCK 642 (784)
Q Consensus 602 ~~~~~~----~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~ 642 (784)
..+... ++..+|.+++....... ..+......|++.|+.
T Consensus 225 ~ll~~~~~~l~~~~~~~~~~~~~~~~~--~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 225 GLFKDDKEALVSDPEVSSVCLEVLSKD--SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHhcCCcccccchhHHHHHHHhhccc--CCcHHHHHHHHHHHHh
Confidence 666552 22344555555544321 1234445555555553
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00024 Score=70.02 Aligned_cols=189 Identities=11% Similarity=-0.017 Sum_probs=130.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC-HHH
Q 003946 449 PTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD-DAALGHVITLCISLGWLDQAHDLLDEMHLAGVR-AS-SSV 525 (784)
Q Consensus 449 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~-~~~ 525 (784)
.....+-.+...+...|++++|...|++.....+ -.|. ..++..+..++.+.|++++|...++.+.+.... |. ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3556778888899999999999999999887651 1111 235677888999999999999999999876422 11 124
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHH
Q 003946 526 YASLLKAYIEA--------NRPREVTALLRDARSAGIQLDAS-CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQE 596 (784)
Q Consensus 526 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 596 (784)
+..+..++.+. |+.++|.+.|+.+.+. .|+.. .+..+..... ... .. ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~---------~~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL---------AGK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH---------HHH
Confidence 44555555554 6788999999998766 44432 2222211110 000 00 011
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 597 FEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 597 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
...+...+.+.|++.+|...++...+..+-.| ....+..+..+|.+.|+.++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22455678888999999999999888764334 3567889999999999999999999888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.016 Score=64.66 Aligned_cols=566 Identities=11% Similarity=0.004 Sum_probs=272.3
Q ss_pred cccccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhc-
Q 003946 80 GGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEG- 158 (784)
Q Consensus 80 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~- 158 (784)
...++..|.|...|..+..+|.++|++..|+++|.+....+ |+ .+|.....+-.. .+.+.++++++.+.......
T Consensus 586 QsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~-s~y~~fk~A~~e-cd~GkYkeald~l~~ii~~~s 661 (1238)
T KOG1127|consen 586 QSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL-SKYGRFKEAVME-CDNGKYKEALDALGLIIYAFS 661 (1238)
T ss_pred HHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH-hHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHH
Confidence 34467788899999999999999999999999999877643 43 444444333333 24566667776666554431
Q ss_pred --cccc-CccchHHHHHHHHhhCCCCccHHHHHHHH-------hhcCCCCChHHHHHHHHHH---hhcCCCchhhHHHHH
Q 003946 159 --KQIL-LEKEPLIYLSLGLSKCGLPVPASTILRKL-------VATEQYPPVTAWSAILAHM---SLTAPGAYLAAELIL 225 (784)
Q Consensus 159 --~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~g~~p~~~~~~~ll~~~---~~~~~~~~~~~~~~~ 225 (784)
.... -...++..+...+.-.|....|...|++- ......-+...|-.+-+++ +..... .-.-.+.
T Consensus 662 ~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~--~vn~h~l 739 (1238)
T KOG1127|consen 662 LERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPS--IVNMHYL 739 (1238)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhccc--chHHHHH
Confidence 0000 01122222333333444444444444443 2222122344443333222 111000 0000111
Q ss_pred Hhhhh-hccCCcCccccccccc---------cCCCCchhhHHHHHHHhhh-------c-CChhHHHHHHHhhhhCCCCCC
Q 003946 226 EIGYL-FQDGRVDPRKKCNAPL---------IAMKPNTNTFNIALAGCLL-------F-ETTRKAEQLLDIMPRIGVKAD 287 (784)
Q Consensus 226 ~a~~~-~~~~~m~~~~~~~~~~---------~~~~p~~~~~~~ll~~~~~-------~-g~~~~A~~l~~~m~~~g~~pd 287 (784)
.++.- ++ .+..-.+..-.+ -...-+.++|-.+...|.+ . .+...|+..+..-++.. .-+
T Consensus 740 ~il~~q~e--~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann 816 (1238)
T KOG1127|consen 740 IILSKQLE--KTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANN 816 (1238)
T ss_pred HHHHHHHH--hcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hcc
Confidence 11111 11 110000000000 0011123344444443333 1 12235566665555432 123
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhc
Q 003946 288 SNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAM 367 (784)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 367 (784)
..+|+.| ......|.+.-|...|-.-....+.... +|..+--.+.++.+++.|...|...+.-+
T Consensus 817 ~~~WnaL-GVlsg~gnva~aQHCfIks~~sep~~~~----~W~NlgvL~l~n~d~E~A~~af~~~qSLd----------- 880 (1238)
T KOG1127|consen 817 EGLWNAL-GVLSGIGNVACAQHCFIKSRFSEPTCHC----QWLNLGVLVLENQDFEHAEPAFSSVQSLD----------- 880 (1238)
T ss_pred HHHHHHH-HHhhccchhhhhhhhhhhhhhccccchh----heeccceeEEecccHHHhhHHHHhhhhcC-----------
Confidence 3444444 3445556666666655544443333333 47777777778888888888777665522
Q ss_pred hhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCc
Q 003946 368 LPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGIL 447 (784)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (784)
T Consensus 881 -------------------------------------------------------------------------------- 880 (1238)
T KOG1127|consen 881 -------------------------------------------------------------------------------- 880 (1238)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHH--HH--HcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIK--AE--KENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHL------- 516 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~--m~--~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------- 516 (784)
+.|...|-...-.....|+.-++..+|.. .. ..| --|+..-|-+...-....|+.++-....+.+..
T Consensus 881 P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~g--ka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 881 PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEG--KAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccc--ccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 11344554444444555555555555554 11 112 133333333333334445554443322222211
Q ss_pred --cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHH----HHHcCChhHHHHHHHHhHhc
Q 003946 517 --AGVRASSSVYASLLKAYIEANRPREVTALLRDAR---SAGIQLDASCYEALLQS----KIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 517 --~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~t~~~li~~----~~~~g~~~~A~~~~~~m~~~ 587 (784)
.+.+-+.+.|.+.....-+.+.+..|.++..+.. +. +-|..+|+.+..- ++..|.++.|..-+......
T Consensus 959 yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~--k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 959 YFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLEL--KLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 1234456777777777777777777766666542 22 3466677754332 33445666554443321110
Q ss_pred CCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003946 588 KIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ 666 (784)
Q Consensus 588 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 666 (784)
.+.....+-+.. .-.++++++.+.|++...--....+ ++....+.-.....+.-+.|..++-+.... -+|+..
T Consensus 1037 ----vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~ 1110 (1238)
T KOG1127|consen 1037 ----VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQAS 1110 (1238)
T ss_pred ----HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-Cccchh
Confidence 001111111111 3356788888988887754333334 234455555666677777777766655543 234444
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003946 667 TFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTL 746 (784)
Q Consensus 667 ~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 746 (784)
+.-.+-..+.-.. +-.....+.+++....+..-+.-++.. .+=-.|.+.||-....+.+.+.... .+-|+..|..|
T Consensus 1111 sll~L~A~~ild~-da~~ssaileel~kl~k~e~~~~~~~l--l~e~i~~~~~r~~~vk~~~qr~~h~-~P~~~~~WslL 1186 (1238)
T KOG1127|consen 1111 SLLPLPAVYILDA-DAHGSSAILEELEKLLKLEWFCWPPGL--LKELIYALQGRSVAVKKQIQRAVHS-NPGDPALWSLL 1186 (1238)
T ss_pred hHHHHHHHHHHhh-hhhhhHHHHHHHHHhhhhHHhccChhH--HHHHHHHHhhhhHHHHHHHHHHHhc-CCCChHHHHHH
Confidence 3333322222222 223333344444432211112112221 1223567888888889999888864 34455666555
Q ss_pred H-HHHhcccccCCchhhHH
Q 003946 747 F-LKYHKTLYKGKTPKFQT 764 (784)
Q Consensus 747 i-~~~~~~~~~~~a~~~~~ 764 (784)
- ...++++.-+-+++...
T Consensus 1187 ~vrya~~n~~n~v~a~~~~ 1205 (1238)
T KOG1127|consen 1187 SVRYAQRNAKNGVVANHGK 1205 (1238)
T ss_pred HHHHHHHhccCCeehhHHH
Confidence 4 55556766665554433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0014 Score=66.66 Aligned_cols=32 Identities=6% Similarity=0.003 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKEN 481 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 481 (784)
|..+|+-...++...|+++++++.+.++.+.+
T Consensus 141 Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 141 NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 34555555555555555555555555555444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0012 Score=67.92 Aligned_cols=249 Identities=12% Similarity=0.068 Sum_probs=165.5
Q ss_pred HHHcC-ChHHHHHHHHHHH---HcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHH
Q 003946 461 FLEAG-KTKELTHFLIKAE---KENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAG--VRASSSVYASLLKAYI 534 (784)
Q Consensus 461 ~~~~g-~~~~a~~~~~~m~---~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~ 534 (784)
+.+.| +.....++|+++. ..+ -.|... +++.=.-..++..++..-+.+...+ -.|+...+...+.+..
T Consensus 212 L~raGydp~gM~~ff~rl~~~~~~~--~~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~ 285 (484)
T COG4783 212 LVRAGYDPQGMPEFFERLADQLRYG--GQPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKY 285 (484)
T ss_pred HHHcCCCchhHHHHHHHHHHHHhcC--CCCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHh
Confidence 34444 3344556677766 333 244443 2221112234555555555555332 2356666666666555
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHH
Q 003946 535 EANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMA 614 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 614 (784)
....-..+..++.+-.+. .-...-|..-+ .+...|+.++|+..++.+...- |+|+.........+.+.++.++|.
T Consensus 286 ~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~ 360 (484)
T COG4783 286 EALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAI 360 (484)
T ss_pred ccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHH
Confidence 444333333333333221 11223333333 4445689999999999988764 888888889999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 615 KLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 615 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
+.++.+....+.. ...+-.+..+|.+.|++.+|+.++++.... .+-|+..|..|-.+|...| +..++.....
T Consensus 361 e~~~kal~l~P~~--~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g-~~~~a~~A~A---- 432 (484)
T COG4783 361 ERLKKALALDPNS--PLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELG-NRAEALLARA---- 432 (484)
T ss_pred HHHHHHHhcCCCc--cHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhC-chHHHHHHHH----
Confidence 9999999865322 455677888999999999999999998876 4558899999999999999 7777655443
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 695 FASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 695 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
..|...|++++|...+....++ ++++..+|...=
T Consensus 433 ------------------E~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~aR~d 466 (484)
T COG4783 433 ------------------EGYALAGRLEQAIIFLMRASQQ-VKLGFPDWARAD 466 (484)
T ss_pred ------------------HHHHhCCCHHHHHHHHHHHHHh-ccCCcHHHHHHH
Confidence 3456789999999999998876 567777776543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.011 Score=61.50 Aligned_cols=152 Identities=8% Similarity=0.094 Sum_probs=105.5
Q ss_pred hhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003946 574 TPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKAL 653 (784)
Q Consensus 574 ~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~ 653 (784)
.+.....++++.......+ ..+|..+++..-+...++.|..+|.+..+......++..++++|.-|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 3344445555544332222 346777888888888888888888888877655457778888888666 46678888888
Q ss_pred HHHHhCCCCCCHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHH
Q 003946 654 KRMRSLGHLPNAQTF-HSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD--EELLDSVLYTFVRGGFFARANEVVAM 730 (784)
Q Consensus 654 ~~m~~~g~~p~~~~~-~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~ 730 (784)
+--+++ -+|...| ...++-+.+.+ +-+.+..+|+.... .++.|+ ..+|..++.-=..-|++..+.++-++
T Consensus 425 eLGLkk--f~d~p~yv~~YldfL~~lN-dd~N~R~LFEr~l~----s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 425 ELGLKK--FGDSPEYVLKYLDFLSHLN-DDNNARALFERVLT----SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHHHh--cCCChHHHHHHHHHHHHhC-cchhHHHHHHHHHh----ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 766554 2444333 35666677777 88888888888877 444444 46788888888888888888888888
Q ss_pred HHhC
Q 003946 731 MEEG 734 (784)
Q Consensus 731 m~~~ 734 (784)
+...
T Consensus 498 ~~~a 501 (656)
T KOG1914|consen 498 RFTA 501 (656)
T ss_pred HHHh
Confidence 7753
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0012 Score=75.78 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 003946 597 FEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN---AQTFHSMVT 673 (784)
Q Consensus 597 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~ 673 (784)
|..|...|.+.+.+++|.++++.|.++.+ -....|...++.+.+..+-+.|..++.+.++. -|- .....-.+.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHH
Confidence 33333333444444444444444433332 12334555555555555555555555555542 232 111222222
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003946 674 GYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFI 738 (784)
Q Consensus 674 a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 738 (784)
--.+.| +.+.+..+|+..... .+--...|+.+++.=.++|+.+.++.+|++....++.|
T Consensus 1609 LEFk~G-DaeRGRtlfEgll~a-----yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1609 LEFKYG-DAERGRTLFEGLLSA-----YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHhhcC-CchhhHHHHHHHHhh-----CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 333445 555555555555441 11234455555555555555555555555555555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00027 Score=69.67 Aligned_cols=187 Identities=12% Similarity=0.034 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHH
Q 003946 486 HDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR-AS-SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDA--SCY 561 (784)
Q Consensus 486 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~ 561 (784)
.....+-.+...+.+.|+++.|...|+++.+.... |. ..++..+..+|.+.|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 44555666777788888888888888887765311 11 245667777888888888888888888765321111 133
Q ss_pred HHHHHHHHHc--------CChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHH
Q 003946 562 EALLQSKIVQ--------KDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDW 633 (784)
Q Consensus 562 ~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y 633 (784)
..+-.++... |+.++|.+.|+++.+.. |.+...+..+..... +..... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----------~~~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----------LRNRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----------HHHHHH---------HHH
Confidence 3333444433 55666777776666543 333222221111100 000000 011
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 634 NNVIHFFCKKRLMQDAEKALKRMRSLGH-LP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 634 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
-.+...|.+.|++++|...+++..+..- .| ....+..+..++...| ++++|..+++.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg-~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG-LKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Confidence 2344556677777777777777665411 12 2356666667777777 77777776666654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.011 Score=57.89 Aligned_cols=207 Identities=8% Similarity=0.043 Sum_probs=129.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003946 456 KLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE 535 (784)
Q Consensus 456 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 535 (784)
..+..+.-.|+...|+.....+.+.. +.|...|..--.+|...|++..|+.=+....+..- -|..++--+-..+-.
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llEi~---~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLEIQ---PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhcC---cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHh
Confidence 34445566788888888888888765 66777777777888888988888877777665542 355555566777788
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHH
Q 003946 536 ANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAK 615 (784)
Q Consensus 536 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 615 (784)
.|+.+.++...++-++. .||-...-.. |- .+.+..+.++.|.+. ...+++.++.+
T Consensus 236 vgd~~~sL~~iRECLKl--dpdHK~Cf~~---YK---klkKv~K~les~e~~-----------------ie~~~~t~cle 290 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKL--DPDHKLCFPF---YK---KLKKVVKSLESAEQA-----------------IEEKHWTECLE 290 (504)
T ss_pred hhhHHHHHHHHHHHHcc--CcchhhHHHH---HH---HHHHHHHHHHHHHHH-----------------HhhhhHHHHHH
Confidence 88888888888887764 5665432221 11 122222333322221 11223444445
Q ss_pred HHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003946 616 LLQEVKEGQRIDC--GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEM 692 (784)
Q Consensus 616 ~~~~~~~~~~~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m 692 (784)
-.+...+..+-.+ ....+..+-.+|...|++.+|++.-.+.++ +.|| ..++.-=..+|.-.. .+|+|+.=|+..
T Consensus 291 ~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE-~YD~AI~dye~A 367 (504)
T KOG0624|consen 291 AGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDE-MYDDAIHDYEKA 367 (504)
T ss_pred HHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhH-HHHHHHHHHHHH
Confidence 4555444332111 122345566677777888888888888776 4565 666666667777777 788887777777
Q ss_pred Hh
Q 003946 693 KS 694 (784)
Q Consensus 693 ~~ 694 (784)
.+
T Consensus 368 ~e 369 (504)
T KOG0624|consen 368 LE 369 (504)
T ss_pred Hh
Confidence 65
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0035 Score=59.25 Aligned_cols=216 Identities=12% Similarity=0.065 Sum_probs=96.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003946 458 VKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN 537 (784)
Q Consensus 458 i~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 537 (784)
++-+--.|.+..++..-..-... +-+...-.-+-++|...|.+... ..++.... .|.......+......-+
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~----~~~~e~d~y~~raylAlg~~~~~---~~eI~~~~-~~~lqAvr~~a~~~~~e~ 86 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS----KTDVELDVYMYRAYLALGQYQIV---ISEIKEGK-ATPLQAVRLLAEYLELES 86 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc----cchhHHHHHHHHHHHHccccccc---cccccccc-CChHHHHHHHHHHhhCcc
Confidence 34455556666655444333222 12222233344566666654332 22333322 233333333333333233
Q ss_pred ChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHH
Q 003946 538 RPRE-VTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKL 616 (784)
Q Consensus 538 ~~~~-A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 616 (784)
+.+. ...+.+.+......-+......-...|+..|++++|++..+... +......=.....+..+++.|.+.
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 23334444433223232333333344556666666666655411 122333333344455555556655
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003946 617 LQEVKEGQRIDCGVHDWNNVIHFFC----KKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEM 692 (784)
Q Consensus 617 ~~~~~~~~~~~p~~~~y~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m 692 (784)
++.|.+.+ +..+.+-|..++. ..+.+.+|.-+|++|-++ ..|+..+.+....++...| ++++|..++++.
T Consensus 160 lk~mq~id----ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~-~~eeAe~lL~ea 233 (299)
T KOG3081|consen 160 LKKMQQID----EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG-RYEEAESLLEEA 233 (299)
T ss_pred HHHHHccc----hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc-CHHHHHHHHHHH
Confidence 55555433 2233443333332 233455555566665554 4555555555555555555 666666655555
Q ss_pred Hh
Q 003946 693 KS 694 (784)
Q Consensus 693 ~~ 694 (784)
..
T Consensus 234 L~ 235 (299)
T KOG3081|consen 234 LD 235 (299)
T ss_pred Hh
Confidence 54
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00038 Score=72.59 Aligned_cols=226 Identities=13% Similarity=0.116 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------C
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR--------A 521 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--------~ 521 (784)
+...|--|-...+.+++-..|+.-+.+..+.. +-+....-+|--.|...|.-..|...++.-++...+ +
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~ 394 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELD---PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE 394 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc
Confidence 55788888888999999999999999998876 566667777778888888888899888887654311 0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHH
Q 003946 522 SSSVYASLLKAYIEANRPREVTALLRDA-RSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEML 600 (784)
Q Consensus 522 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 600 (784)
+...-+. ..+.....+....++|-++ ...+..+|...+..|--.|--.|++++|+..|+...... |.+...||-|
T Consensus 395 ~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~--Pnd~~lWNRL 470 (579)
T KOG1125|consen 395 NEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK--PNDYLLWNRL 470 (579)
T ss_pred cccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC--CchHHHHHHh
Confidence 1000000 1222223345556666666 455544666666677666777899999999999988755 9999999999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCCCHHHHHH
Q 003946 601 VKGCAQNHEAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRLMQDAEKALKRMRSL---------GHLPNAQTFHS 670 (784)
Q Consensus 601 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~~~~~~ 670 (784)
...++...+.++|...|.+..+ +.|+ +.++-.|.-.|...|.+++|.+.|-+.+.. +..++...|..
T Consensus 471 GAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~t 547 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQT 547 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHH
Confidence 9999999999999999999988 4565 445566777789999999999988765532 11223456666
Q ss_pred HHHHHHHcCCCHHHHH
Q 003946 671 MVTGYAAIGGKYTEVT 686 (784)
Q Consensus 671 ll~a~~~~g~~~~~a~ 686 (784)
|=.++.-.+ +.|.+.
T Consensus 548 LR~als~~~-~~D~l~ 562 (579)
T KOG1125|consen 548 LRLALSAMN-RSDLLQ 562 (579)
T ss_pred HHHHHHHcC-CchHHH
Confidence 666666666 655443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.026 Score=61.60 Aligned_cols=220 Identities=12% Similarity=0.055 Sum_probs=124.4
Q ss_pred CCChHHHHHHHH--HHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhc--cccc
Q 003946 87 ARDPAKLSAEIE--NAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEG--KQIL 162 (784)
Q Consensus 87 ~~~~~~~~~li~--~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~ 162 (784)
.-|+.+-..++. -|.-.|+.+.|.+-.+-+. +...|..+-+.|.+..+++-+.-.++...+..... +...
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 346666666663 4556788898888777543 34678888888888766555444444333321100 0001
Q ss_pred Ccc-chHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccc
Q 003946 163 LEK-EPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKK 241 (784)
Q Consensus 163 ~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~ 241 (784)
-++ +.-......-...|.+++|..++.+-.+. -|++-+.+. .|.+++|+++-+ .-+
T Consensus 797 q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~----------DLlNKlyQs-------~g~w~eA~eiAE--~~D---- 853 (1416)
T KOG3617|consen 797 QNGEEDEAKVAVLAIELGMLEEALILYRQCKRY----------DLLNKLYQS-------QGMWSEAFEIAE--TKD---- 853 (1416)
T ss_pred hCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHh-------cccHHHHHHHHh--hcc----
Confidence 122 22222333344678999999999887753 133333332 489999988876 322
Q ss_pred ccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCC-------------------CCCChhHHHHHHHHHHhcC
Q 003946 242 CNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIG-------------------VKADSNLLIIMAHIYERNG 302 (784)
Q Consensus 242 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g-------------------~~pd~~~~~~li~~~~~~g 302 (784)
.+.. ..||-.-...+-..+|.+.|++.|+.-.... -..|...|.-...-+-..|
T Consensus 854 ------RiHL-r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~G 926 (1416)
T KOG3617|consen 854 ------RIHL-RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVG 926 (1416)
T ss_pred ------ceeh-hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 1222 2244444445555677777777766432111 0123334444444445567
Q ss_pred CHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003946 303 RREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 303 ~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
+.+.|..+|..... |-+++...|-.|+.++|-++-++-..
T Consensus 927 emdaAl~~Y~~A~D------------~fs~VrI~C~qGk~~kAa~iA~esgd 966 (1416)
T KOG3617|consen 927 EMDAALSFYSSAKD------------YFSMVRIKCIQGKTDKAARIAEESGD 966 (1416)
T ss_pred chHHHHHHHHHhhh------------hhhheeeEeeccCchHHHHHHHhccc
Confidence 77777777766554 66666666777777777776655443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.5e-06 Score=52.73 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003946 632 DWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA 665 (784)
Q Consensus 632 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 665 (784)
+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00047 Score=73.84 Aligned_cols=222 Identities=14% Similarity=0.115 Sum_probs=173.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
.|-...-..+...+...|-...|..+|++... |.-+|.+|+..|+..+|..+..+-.++ +||...|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem-----------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM-----------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH-----------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence 44445556677788899999999999988653 445888999999999999998888874 68899999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
.+.+.....--+++|.++++..... -...++.+ ....++++++.+.|+.-.+.+ |-...+|-.+..+..+.
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar----A~r~~~~~---~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR----AQRSLALL---ILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQL 532 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH----HHHhhccc---cccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHH
Confidence 8888887777788999988876532 11112221 223688999999998877655 55667888888888899
Q ss_pred CcHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHH
Q 003946 608 HEAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVT 686 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~ 686 (784)
+++..|.+.|..-.... || ...||.+-.+|.+.|+-.+|...+.+..+-. .-+...|...+......| .+++|.
T Consensus 533 ek~q~av~aF~rcvtL~---Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvg-e~eda~ 607 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLE---PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVG-EFEDAI 607 (777)
T ss_pred hhhHHHHHHHHHHhhcC---CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcc-cHHHHH
Confidence 99999999998887743 44 5689999999999999999999999999876 444566777777788889 999999
Q ss_pred HHHHHHHhcc
Q 003946 687 ELWGEMKSFA 696 (784)
Q Consensus 687 ~~~~~m~~~~ 696 (784)
+.+.++..+.
T Consensus 608 ~A~~rll~~~ 617 (777)
T KOG1128|consen 608 KAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHhh
Confidence 9999887753
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0042 Score=58.22 Aligned_cols=160 Identities=8% Similarity=0.039 Sum_probs=85.7
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 003946 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK 643 (784)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~ 643 (784)
++-+....|+.+-|...++++...- |.+...-..-...+...|++++|.++++.+.+.++ -|.++|.-=+...-..
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp--t~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDP--TDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCc--chhHHHHHHHHHHHHc
Confidence 3334444555555555555555433 33333333333334445556666666666665543 2455555555555556
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcC---C
Q 003946 644 RLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGG---F 720 (784)
Q Consensus 644 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g---~ 720 (784)
|+.-+|++-+.+..+. +..|...|.-+-..|...| +++.|.-+++++.-. -+.++-.+..+.+.+.-.| +
T Consensus 134 GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~-~f~kA~fClEE~ll~-----~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEG-DFEKAAFCLEELLLI-----QPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred CCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHhhHHH
Confidence 6666666666666655 4556666666666666666 666666666666541 1223444444444444333 3
Q ss_pred hHHHHHHHHHHHhC
Q 003946 721 FARANEVVAMMEEG 734 (784)
Q Consensus 721 ~~~A~~l~~~m~~~ 734 (784)
.+-|.+.+.+..+.
T Consensus 207 ~~~arkyy~~alkl 220 (289)
T KOG3060|consen 207 LELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHHh
Confidence 45556666666553
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.4e-06 Score=52.50 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003946 707 LLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDK 740 (784)
Q Consensus 707 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 740 (784)
+|+++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0013 Score=62.25 Aligned_cols=99 Identities=9% Similarity=0.033 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHH-HhcCc--HHHHHHHHHHHHhcCCCCCCHHHH
Q 003946 557 DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC-AQNHE--AGLMAKLLQEVKEGQRIDCGVHDW 633 (784)
Q Consensus 557 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a~~~~~~~~~~~~~~p~~~~y 633 (784)
|...|..+-..|...|+.++|+..|++..+.. |++...+..+..++ ...|+ .++|.+++++..+.++- +..++
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~--~~~al 147 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN--EVTAL 147 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC--ChhHH
Confidence 33344444444444444444444444443332 33333333333332 23333 24444444444443221 23344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 634 NNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 634 ~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
..+...+.+.|++++|+..++++.+.
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45555555555555555555555543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.004 Score=70.94 Aligned_cols=81 Identities=11% Similarity=0.095 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKA 532 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 532 (784)
.+..+..+|-+.|+.++|...++++.+.. +-|..+.|.+-..|+.. ++++|.+++......
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------- 178 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------- 178 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------
Confidence 44556666666666666666666666655 45555566666666665 666666666555443
Q ss_pred HHHcCChHHHHHHHHHHHHc
Q 003946 533 YIEANRPREVTALLRDARSA 552 (784)
Q Consensus 533 ~~~~g~~~~A~~~~~~m~~~ 552 (784)
|...+++.++..++.++...
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHhhhcchHHHHHHHHHHhc
Confidence 44555666666666666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0041 Score=70.13 Aligned_cols=202 Identities=13% Similarity=0.055 Sum_probs=145.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 449 PTEKIYIKLVKAFLEAGKTKELT-HFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 449 p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
.++.....+=.+.+..|..++|- +++.+..+ ++..........++.--.....+ ....+...+-
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 90 (694)
T PRK15179 26 SGPTILDLLEAALAEPGESEEAGRELLQQARQ--------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQV 90 (694)
T ss_pred CCcHHHhHHHHHhcCcccchhHHHHHHHHHHH--------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHH
Confidence 35555556666777777777663 33333321 22222222222222222222222 2345688888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDA-SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ 606 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 606 (784)
.|.......|.+++|..+++...+. .||. .....+...+.+.+++++|+...++..... |++......+..++.+
T Consensus 91 ~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~~l~~ 166 (694)
T PRK15179 91 LVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEAKSWDE 166 (694)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHH
Confidence 8999999999999999999999876 5654 567778888999999999999999988876 8888899999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 607 NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMV 672 (784)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 672 (784)
.|++++|..+|+++...++ -+..++..+..++-..|+.++|...|++..+. ..|-...|+.++
T Consensus 167 ~g~~~~A~~~y~~~~~~~p--~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 167 IGQSEQADACFERLSRQHP--EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred hcchHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 9999999999999997432 13667888999999999999999999998876 345555555444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.029 Score=58.49 Aligned_cols=212 Identities=9% Similarity=0.052 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 003946 505 DQAHDLLDEMHLAGVRASSSVYASLLKAYIEA---NRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLF 581 (784)
Q Consensus 505 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 581 (784)
+++..+++.....-..-+..+|..+.+-=-.. ...+....+++++...-..--..+|..+|+.-.+..-++.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 45555555554432223344444333221111 125566677777654332223467888888888888899999999
Q ss_pred HHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003946 582 KEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGH 661 (784)
Q Consensus 582 ~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 661 (784)
.+..+.+..+.....+++++.-++ +++.+-|.++|+.-....+- +..--...++-+...++-..|..+|++....++
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 999998877755666666666554 56789999999987776542 233346778888899999999999999999877
Q ss_pred CCC--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCh
Q 003946 662 LPN--AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFF 721 (784)
Q Consensus 662 ~p~--~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 721 (784)
.|| ...|..+|.-=+.-| +.+.+.++-+++....+.. ..+...+-..+++.|.-.+..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vG-dL~si~~lekR~~~af~~~-qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVG-DLNSILKLEKRRFTAFPAD-QEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhcchh-hcCCCChHHHHHHHHhhcccc
Confidence 776 578999999888889 9999999888876643321 333333445566666666554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.3e-05 Score=51.21 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003946 631 HDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP 663 (784)
Q Consensus 631 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 663 (784)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 479999999999999999999999999998887
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.5e-05 Score=50.89 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003946 706 ELLDSVLYTFVRGGFFARANEVVAMMEEGKMFI 738 (784)
Q Consensus 706 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 738 (784)
.+|+.++.+|++.|+++.|.+++++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999999887
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.043 Score=57.36 Aligned_cols=105 Identities=10% Similarity=-0.003 Sum_probs=76.0
Q ss_pred HHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhh
Q 003946 98 ENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSK 177 (784)
Q Consensus 98 ~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 177 (784)
.+.+..|+++.|+.+|-+...... +|.+.|..=..+++.. +.+.+|+.-..+..+. + +..+.-|..+-.++..
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~---~~~~~al~da~k~~~l-~--p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASL---GSYEKALKDATKTRRL-N--PDWAKGYSRKGAALFG 82 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHH---hhHHHHHHHHHHHHhc-C--CchhhHHHHhHHHHHh
Confidence 345678999999999999888664 4778888888888874 4556677777766665 2 2367778888889999
Q ss_pred CCCCccHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 003946 178 CGLPVPASTILRKLVATEQYPPVTAWSAILAHM 210 (784)
Q Consensus 178 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 210 (784)
.|++++|..-|.+=++.... +...++-+..++
T Consensus 83 lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAY 114 (539)
T ss_pred cccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhh
Confidence 99999999999887764221 344455555444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.043 Score=57.35 Aligned_cols=104 Identities=10% Similarity=-0.060 Sum_probs=76.6
Q ss_pred HHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCc
Q 003946 173 LGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPN 252 (784)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~ 252 (784)
++.+..|+++.|..+|-+.+..... |.+.|..-..+|+.. |++.+|++=-. +- ..+.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~--------~~~~~al~da~--k~----------~~l~p~ 68 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASL--------GSYEKALKDAT--KT----------RRLNPD 68 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHH--------hhHHHHHHHHH--HH----------HhcCCc
Confidence 3456789999999999988776443 778888888888886 77877765333 22 224676
Q ss_pred hh-hHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHH
Q 003946 253 TN-TFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIY 298 (784)
Q Consensus 253 ~~-~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 298 (784)
.. -|+..-.++.-.|++++|+.-|.+=++.. +.|...++-+.+++
T Consensus 69 w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 69 WAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 43 68888888889999999999999887753 23446666777776
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00078 Score=60.12 Aligned_cols=99 Identities=8% Similarity=-0.164 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 003946 561 YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFF 640 (784)
Q Consensus 561 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~ 640 (784)
+......+...|++++|...|+...... |.+...+..+..++...|++++|...|+......+ .+...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p--~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA--SHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCcHHHHHHHHHH
Confidence 3444555566666666666666666543 55566666666666666666666666666665432 2445566666677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH
Q 003946 641 CKKRLMQDAEKALKRMRSLGHLPNA 665 (784)
Q Consensus 641 ~~~g~~~~A~~~~~~m~~~g~~p~~ 665 (784)
...|+.++|...|++..+. .|+.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~--~p~~ 125 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKM--SYAD 125 (144)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCC
Confidence 7777777777777776663 4543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0046 Score=63.71 Aligned_cols=191 Identities=15% Similarity=0.109 Sum_probs=124.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
.|+...+...+.+......-..+..++.+-.+.+ -...-|..-+.. ...|+++.|+..++.+... .+-|...+.
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~aa~YG~A~~~-~~~~~~d~A~~~l~~L~~~-~P~N~~~~~ 344 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKRG----GLAAQYGRALQT-YLAGQYDEALKLLQPLIAA-QPDNPYYLE 344 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCcc----chHHHHHHHHHH-HHhcccchHHHHHHHHHHh-CCCCHHHHH
Confidence 4566666666665544444344333333332212 122335544443 3567888888888887765 344677777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLD-ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ 606 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 606 (784)
...+.+.+.++..+|.+.++.+... .|+ ...+-.+-.+|.+.|++.+|+.+++...... |.++..|..|..+|..
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--p~dp~~w~~LAqay~~ 420 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND--PEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--CCCchHHHHHHHHHHH
Confidence 7778888888888888888888776 565 4566677778888888888888888877665 6777788888888888
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 003946 607 NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTF 668 (784)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 668 (784)
.|+..++ --+.-..|...|+++.|...+....+. ++++..+|
T Consensus 421 ~g~~~~a-------------------~~A~AE~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 421 LGNRAEA-------------------LLARAEGYALAGRLEQAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred hCchHHH-------------------HHHHHHHHHhCCCHHHHHHHHHHHHHh-ccCCcHHH
Confidence 7754443 233445566777777777777777665 34444433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0028 Score=59.95 Aligned_cols=160 Identities=14% Similarity=0.009 Sum_probs=107.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003946 492 GHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQ 571 (784)
Q Consensus 492 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 571 (784)
..+-.++...|+-+....+........ +.|....+..+....+.|++.+|...|.+..... .+|...|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 344455566666666666655544321 2355566667777777788888887777776543 56777777777777777
Q ss_pred CChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003946 572 KDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEK 651 (784)
Q Consensus 572 g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~ 651 (784)
|+.++|..-|.+..+.- +.++..++.+...+.-.|+.+.|..++........ -|...-..+.......|++++|.+
T Consensus 148 Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~--ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 148 GRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA--ADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC--CchHHHHHHHHHHhhcCChHHHHh
Confidence 88887777777776643 55566777777777777777777777776665431 255566777777778888888887
Q ss_pred HHHHHH
Q 003946 652 ALKRMR 657 (784)
Q Consensus 652 ~~~~m~ 657 (784)
+...-.
T Consensus 224 i~~~e~ 229 (257)
T COG5010 224 IAVQEL 229 (257)
T ss_pred hccccc
Confidence 765544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.002 Score=60.87 Aligned_cols=160 Identities=16% Similarity=0.038 Sum_probs=128.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003946 455 IKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYI 534 (784)
Q Consensus 455 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 534 (784)
..+-..+...|+-+....+........ +.|.......+....+.|++..|...+++..+.. ++|..+|+.+--+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~---~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY---PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC---cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHH
Confidence 556677778888888877777765443 4566666678888899999999999999988764 578999999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHH
Q 003946 535 EANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMA 614 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 614 (784)
+.|+.++|..-|.+..+.-. -+...+|.|...|.-.|+.+.|..++......+ +.+...-..+.-+....|++++|+
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 146 QLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHHH
Confidence 99999999999998877532 356678888888888899999999999888766 445677888888889999999998
Q ss_pred HHHHHHH
Q 003946 615 KLLQEVK 621 (784)
Q Consensus 615 ~~~~~~~ 621 (784)
.+...-.
T Consensus 223 ~i~~~e~ 229 (257)
T COG5010 223 DIAVQEL 229 (257)
T ss_pred hhccccc
Confidence 8765443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0013 Score=58.76 Aligned_cols=95 Identities=7% Similarity=-0.127 Sum_probs=66.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAY 533 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 533 (784)
+......+.+.|++++|...|....... +.+...|..+..++.+.|++++|...|+...+.. +.+...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ---PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 4455666677777777777777776665 5566667777777777777777777777777654 33666777777777
Q ss_pred HHcCChHHHHHHHHHHHHc
Q 003946 534 IEANRPREVTALLRDARSA 552 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~ 552 (784)
...|+.++|...|+...+.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0013 Score=62.30 Aligned_cols=118 Identities=16% Similarity=0.092 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCC--hhHHH
Q 003946 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSK-IVQKD--TPGAL 578 (784)
Q Consensus 502 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~-~~~g~--~~~A~ 578 (784)
++.+++...++...+.. +.|...|..|...|...|++++|...|++..+.. .-+...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 33444444444444432 2345555555555555555555555555554432 11334444444432 33343 25555
Q ss_pred HHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003946 579 HLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEG 623 (784)
Q Consensus 579 ~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 623 (784)
+++++..+.. |.+..++..+...+.+.|++++|...|+.+.+.
T Consensus 131 ~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555443 444445555555555555555555555555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.033 Score=52.90 Aligned_cols=221 Identities=10% Similarity=0.020 Sum_probs=143.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 455 IKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQ-AHDLLDEMHLAGVRASSSVYASLLKAY 533 (784)
Q Consensus 455 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~~~~~~~~~li~~~ 533 (784)
.-+-.+|...|.+.... .++.... .|....+..+-.....-++.+. -.++.+.+.......|......-...|
T Consensus 45 ~y~~raylAlg~~~~~~---~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~ 118 (299)
T KOG3081|consen 45 VYMYRAYLALGQYQIVI---SEIKEGK---ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIY 118 (299)
T ss_pred HHHHHHHHHcccccccc---ccccccc---CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHh
Confidence 34555666667654432 2222221 2333323222222222333333 344556666555554544444555668
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh----cCc
Q 003946 534 IEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ----NHE 609 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~----~~~ 609 (784)
++.|++++|++..+... +......=+..+.+..+.+-|.+.+++|.+- ++..|.+-|..++.+ .+.
T Consensus 119 ~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 119 MHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchh
Confidence 89999999998887622 2233333344455667889999999999873 445677767666654 346
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Q 003946 610 AGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELW 689 (784)
Q Consensus 610 ~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~ 689 (784)
+.+|.-+|++|.++. .|+..+.|-+..++...|++++|..++++.+.+. .-++.|...++..-...|.+.+-..+..
T Consensus 189 ~qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 889999999999875 4788888999999999999999999999999874 3367777777777777774556667777
Q ss_pred HHHHh
Q 003946 690 GEMKS 694 (784)
Q Consensus 690 ~~m~~ 694 (784)
.+++.
T Consensus 266 ~QLk~ 270 (299)
T KOG3081|consen 266 SQLKL 270 (299)
T ss_pred HHHHh
Confidence 77776
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.7e-05 Score=47.77 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003946 632 DWNNVIHFFCKKRLMQDAEKALKRMRSLGH 661 (784)
Q Consensus 632 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 661 (784)
+||+||++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 689999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0068 Score=68.40 Aligned_cols=184 Identities=10% Similarity=0.039 Sum_probs=119.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
..++..+-.|.....+.|.+++|..+++...+.. +-+......+...+.+.+++++|...++....... -+.....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHH
Confidence 3456777777788888888888888888887654 33444566677777888888888888888877652 2566677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
.+..++.+.|++++|..+|++....+ .-+..++..+-.++-..|+.++|...|+...+.. .+....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~--~~~~~~~~~~~~----- 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI--GDGARKLTRRLV----- 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CcchHHHHHHHH-----
Confidence 77777888888888888888887642 2236777788888888888888888888877654 233344444432
Q ss_pred CcHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHhcC
Q 003946 608 HEAGLMAKLLQEVKEGQR---IDCGVHDWNNVIHFFCKKR 644 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~---~~p~~~~y~~li~~~~~~g 644 (784)
++..-..+++.+.-... ..-.+.+...+|.-|.+..
T Consensus 231 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 231 -DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred -HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 22233344444432211 1113445566666665543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.027 Score=64.48 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 491 LGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 491 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 550 (784)
+-.+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.+...|+.. ++++|..++.+..
T Consensus 119 l~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 119 LRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 4444455555555555555555555544 23455555555555555 5555555554443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.5e-05 Score=47.39 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=25.3
Q ss_pred hhHHHHHHHhhhcCChhHHHHHHHhhhhCCC
Q 003946 254 NTFNIALAGCLLFETTRKAEQLLDIMPRIGV 284 (784)
Q Consensus 254 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~ 284 (784)
+|||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0024 Score=56.51 Aligned_cols=92 Identities=15% Similarity=0.008 Sum_probs=42.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 003946 563 ALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCK 642 (784)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~ 642 (784)
.+...+...|+.++|.+.|+.....+ |.+...+..+...+.+.|++++|...++......+ .+...|..+...|..
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP--DDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHH
Confidence 33344444445555555544444432 33344444444444444444444444444433221 123334444445555
Q ss_pred cCCHHHHHHHHHHHHh
Q 003946 643 KRLMQDAEKALKRMRS 658 (784)
Q Consensus 643 ~g~~~~A~~~~~~m~~ 658 (784)
.|+.++|...|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00086 Score=54.44 Aligned_cols=80 Identities=8% Similarity=0.135 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCCH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQV-SHDDAALGHVITLCISLGW--------LDQAHDLLDEMHLAGVRASS 523 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~p~~~~~~~li~~~~~~g~--------~~~a~~~~~~m~~~g~~~~~ 523 (784)
|-...|..+...+++.....+|..+++.| + .|+..+|+.++.+.++..- +-....+|+.|...+++|+.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~--i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~ 104 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNG--ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPND 104 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcC--CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcH
Confidence 44455666666677777777777777766 5 6777777777766665321 22344455555555555555
Q ss_pred HHHHHHHHHHH
Q 003946 524 SVYASLLKAYI 534 (784)
Q Consensus 524 ~~~~~li~~~~ 534 (784)
.+|+.++..+.
T Consensus 105 etYnivl~~Ll 115 (120)
T PF08579_consen 105 ETYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00054 Score=71.40 Aligned_cols=124 Identities=12% Similarity=0.063 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
..+......+++.+....+++++..++.+.+........-..|..++|+.|.+.|..+.+..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 44777888899999999999999999999886632122333445699999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQ 571 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 571 (784)
.||+.+.+.|++..|.++...|..++...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998887777888888888887765
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0021 Score=66.91 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC 604 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~ 604 (784)
...+|+..+...++++.|..+|+++.+. .|+. ...++..+...++-.+|++++++..+.. |.+..........|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3345556666667788888888887765 3543 3346666666777777888877777554 55566666666777
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 605 AQNHEAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 605 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
.+.++++.|.++.+.+.+.. |+ ..+|..|..+|...|++++|+..++.++-
T Consensus 245 l~k~~~~lAL~iAk~av~ls---P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS---PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 77888888888888777743 43 45888899999999999999888887763
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0034 Score=55.50 Aligned_cols=98 Identities=13% Similarity=0.018 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 489 AALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSK 568 (784)
Q Consensus 489 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 568 (784)
.....+...+.+.|++++|...|+.+...+ +.+...+..+...|.+.|++++|..++++..+.+ ..+...+..+-..+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334445555556666666666666665543 2355566666666666666666666666655543 23445555555566
Q ss_pred HHcCChhHHHHHHHHhHhcC
Q 003946 569 IVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 569 ~~~g~~~~A~~~~~~m~~~~ 588 (784)
...|+.++|+..|+...+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 66666666666666655543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.02 Score=53.88 Aligned_cols=165 Identities=12% Similarity=0.063 Sum_probs=122.6
Q ss_pred CChhHHHHHHHHhHh---cC-CCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003946 572 KDTPGALHLFKEMKE---SK-IPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 572 g~~~~A~~~~~~m~~---~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
.+.++.++++.++.. .| ..++-...|..++-+....|+.+.|...++.+....+-.+.+.-..+|. +-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchh
Confidence 456777777766653 23 3355566778888888899999999999999988764444444444433 45689999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003946 648 DAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEV 727 (784)
Q Consensus 648 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 727 (784)
+|+++++..++.+ +.|.+++--=+......| +--+|++-+.+..+ .+.-|.+.|.-|...|...|++++|.-.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G-K~l~aIk~ln~YL~-----~F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQG-KNLEAIKELNEYLD-----KFMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcC-CcHHHHHHHHHHHH-----HhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 9999999999875 446777776666666777 66677776666655 3666999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHH
Q 003946 728 VAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 728 ~~~m~~~g~~pd~~~~~~li 747 (784)
+++|.- +.|-...|..=+
T Consensus 177 lEE~ll--~~P~n~l~f~rl 194 (289)
T KOG3060|consen 177 LEELLL--IQPFNPLYFQRL 194 (289)
T ss_pred HHHHHH--cCCCcHHHHHHH
Confidence 999986 356655554433
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0059 Score=54.67 Aligned_cols=127 Identities=9% Similarity=0.066 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 003946 597 FEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN--AQTFHSMVT 673 (784)
Q Consensus 597 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~ 673 (784)
|..++..+ ..++...+...++.+...++-.| .....-.+...+...|++++|...|+........|+ ......+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344444 25566677777777776553211 112333455777889999999999999998752222 223445667
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003946 674 GYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMM 731 (784)
Q Consensus 674 a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 731 (784)
.+...| ++++|...++.... -......+....+.|.+.|++++|...|++.
T Consensus 94 ~~~~~~-~~d~Al~~L~~~~~------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQG-QYDEALATLQQIPD------EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcC-CHHHHHHHHHhccC------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 778888 99999999876433 2335567788899999999999999998764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0047 Score=64.30 Aligned_cols=121 Identities=13% Similarity=0.051 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003946 455 IKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYI 534 (784)
Q Consensus 455 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 534 (784)
.+|+..+...++++.|..+|+++.+. .|+. ...+...+...++-.+|.+++++..+.. +-+......-...|.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~----~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER----DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc----CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444445555555555555555432 3443 2234455555555555555555555331 224444444444455
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHh
Q 003946 535 EANRPREVTALLRDARSAGIQLDAS-CYEALLQSKIVQKDTPGALHLFKEM 584 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m 584 (784)
+.++++.|..+.+++.+. .|+.. +|..|..+|...|+++.|+..++.+
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555555443 34332 5555555555555555555555543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0059 Score=54.67 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASS--SVYASL 529 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~l 529 (784)
..|..++..+ ..++...+...++.+....+.........-.+-..+...|++++|...|+........|+. ...-.|
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3556666666 4777788777788877765211111222333446667778888888888888776522221 233446
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKE 583 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 583 (784)
...+...|++++|+..++..... ......+...-..|...|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777778888888887664332 22344555666677777777777777764
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0037 Score=50.87 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=70.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHcCCCCCHHHH
Q 003946 491 LGHVITLCISLGWLDQAHDLLDEMHLAGV-RASSSVYASLLKAYIEAN--------RPREVTALLRDARSAGIQLDASCY 561 (784)
Q Consensus 491 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~t~ 561 (784)
-...|..|...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+++.|...+++|+..||
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 899999999999988763 355789999999999999999999
Q ss_pred HHHHHHHHHc
Q 003946 562 EALLQSKIVQ 571 (784)
Q Consensus 562 ~~li~~~~~~ 571 (784)
+.++..+.+.
T Consensus 108 nivl~~Llkg 117 (120)
T PF08579_consen 108 NIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHh
Confidence 9999998763
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.003 Score=65.99 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=105.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003946 484 VSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA--GVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561 (784)
Q Consensus 484 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 561 (784)
.+........+++.+....+++.+..++-..... ....-..|..++|..|.+.|..+++..+++.=...|+-||..|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3667777888999998888999999999888865 22222345569999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
|.||..+.+.|++..|.++..+|...+. .+++.|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~-~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEE-FDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988776 35567888888888776
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0075 Score=60.68 Aligned_cols=143 Identities=10% Similarity=0.078 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGY 675 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 675 (784)
+|..++..+-+.+..+.|.++|....+......++....+++. |...++.+.|.++|+...+. +..+...|...++-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4556666666666666777777666654433334433344443 33346666688888888776 555677777778888
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003946 676 AAIGGKYTEVTELWGEMKSFASSTSMNF---DEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFL 748 (784)
Q Consensus 676 ~~~g~~~~~a~~~~~~m~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 748 (784)
...+ +.+.|..+|+.... .+.+ ....|...++.=.+.|+++.+.++.+++.+ ..|+......++.
T Consensus 81 ~~~~-d~~~aR~lfer~i~-----~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLN-DINNARALFERAIS-----SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSD 148 (280)
T ss_dssp HHTT--HHHHHHHHHHHCC-----TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHC
T ss_pred HHhC-cHHHHHHHHHHHHH-----hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHH
Confidence 8888 88888888888775 1222 234788888888888888888888888887 3566666666663
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.015 Score=49.79 Aligned_cols=60 Identities=12% Similarity=-0.024 Sum_probs=24.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQ--LDASCYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
.+...+.+.|++++|...|+.+...... .....+..+..++.+.|+.++|...++++.+.
T Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 44 WLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3444444444444444444444332100 01223333334444444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.36 Score=49.20 Aligned_cols=110 Identities=13% Similarity=0.159 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC 604 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~ 604 (784)
+.+..|.-+...|+...|.++-.+.. -||..-|-..+.+++..++|++-.++... .- + ++-|...+.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK-s--PIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK-S--PIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC-C--CCChHHHHHHH
Confidence 33444555566677666666655554 46777777777777777777765554322 11 1 24566666777
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003946 605 AQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRM 656 (784)
Q Consensus 605 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 656 (784)
.+.|+..+|..+...+. +..-+..|.++|++.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 77776666666665522 345566667777777666654433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0085 Score=55.33 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----------------CChHHHH
Q 003946 485 SHDDAALGHVITLCIS-----LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEA----------------NRPREVT 543 (784)
Q Consensus 485 ~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g~~~~A~ 543 (784)
..|..+|..++..|.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4577778888888875 477888888889999999999999999999987542 2245678
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 544 ALLRDARSAGIQLDASCYEALLQSKIVQKD 573 (784)
Q Consensus 544 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 573 (784)
+++++|...|+-||..|+..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888888876543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.66 Score=51.98 Aligned_cols=222 Identities=14% Similarity=0.133 Sum_probs=149.2
Q ss_pred HhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCC
Q 003946 101 INEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGL 180 (784)
Q Consensus 101 ~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 180 (784)
...+++..|+....++.+.. | ...|..+++++... +.+.+.+|+.+++..... . +.+..+...+..+|-..|+
T Consensus 20 ld~~qfkkal~~~~kllkk~--P-n~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~-~--~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--P-NALYAKVLKALSLF-RLGKGDEALKLLEALYGL-K--GTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--C-CcHHHHHHHHHHHH-HhcCchhHHHHHhhhccC-C--CCchHHHHHHHHHHHHHhh
Confidence 36789999999999988854 4 35677888888764 467778888777776544 1 1255556668889999999
Q ss_pred CccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHH----HhhhhhccCCcCccccccccccCCCCchhhH
Q 003946 181 PVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELIL----EIGYLFQDGRVDPRKKCNAPLIAMKPNTNTF 256 (784)
Q Consensus 181 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~----~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~ 256 (784)
.++|..+++...+. .|+..-...+..+|.|. +.+. -|+++++ ..+.+.+.+
T Consensus 93 ~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~--------~~yk~qQkaa~~LyK---------------~~pk~~yyf 147 (932)
T KOG2053|consen 93 LDEAVHLYERANQK--YPSEELLYHLFMAYVRE--------KSYKKQQKAALQLYK---------------NFPKRAYYF 147 (932)
T ss_pred hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH---------------hCCcccchH
Confidence 99999999999875 56766666667777775 4443 3555555 235567777
Q ss_pred HHHHHHhhhcC-C---------hhHHHHHHHhhhhCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHH-HHhhcCCChhh
Q 003946 257 NIALAGCLLFE-T---------TRKAEQLLDIMPRIGVKADS-NLLIIMAHIYERNGRREELRKLQRH-IDEAVNLSDIQ 324 (784)
Q Consensus 257 ~~ll~~~~~~g-~---------~~~A~~l~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~A~~l~~~-~~~~~~~~~~~ 324 (784)
.++++...+.- . ...|...++.+.+.+-+... .-.-.-...+-..|.+++|..++.. ..+...+....
T Consensus 148 WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~ 227 (932)
T KOG2053|consen 148 WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLY 227 (932)
T ss_pred HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchH
Confidence 88888777643 1 23445566666554312222 1111122345678889999999843 33332222221
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 003946 325 FRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAK 357 (784)
Q Consensus 325 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 357 (784)
.-+.-++.+.+.+++.+..++-.++.++|.
T Consensus 228 ---l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 228 ---LENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred ---HHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 356778888999999999999998888763
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.011 Score=47.94 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAY 533 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 533 (784)
|..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD---PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 3445555666677777777777666554 3333455556666666666667766666666543 22334556666666
Q ss_pred HHcCChHHHHHHHHHHHH
Q 003946 534 IEANRPREVTALLRDARS 551 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~ 551 (784)
...|+.++|...+....+
T Consensus 79 ~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 79 YKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHhHHHHHHHHHHHHc
Confidence 666666666666665543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.44 Score=49.08 Aligned_cols=129 Identities=9% Similarity=0.013 Sum_probs=82.9
Q ss_pred HhcCc-HHHHHHHHHHHHhcCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCCCC----HHHHHHHH
Q 003946 605 AQNHE-AGLMAKLLQEVKEGQRIDCGVHDWNNVI----HFFCK---KRLMQDAEKALKRMRSLGHLPN----AQTFHSMV 672 (784)
Q Consensus 605 ~~~~~-~~~a~~~~~~~~~~~~~~p~~~~y~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll 672 (784)
-+.|. -+.|.++++.+..-.. -|...-|.+. ..|.. ...+.+-.++-+-..+.|+.|- ...-|.|-
T Consensus 390 W~~g~~dekalnLLk~il~ft~--yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTN--YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 33444 6677777777765321 1333323222 12221 1224444455555567788773 33445555
Q ss_pred HH--HHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 673 TG--YAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 673 ~a--~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
+| +...| +++++.-.-..+.+ +.|++.+|..+.-.+....++++|...+.++ +|+..++++=+
T Consensus 468 DAEyLysqg-ey~kc~~ys~WL~~------iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 468 DAEYLYSQG-EYHKCYLYSSWLTK------IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHH------hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 43 45667 99998877777765 8899999999999999999999999999885 56777776654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.028 Score=48.18 Aligned_cols=102 Identities=12% Similarity=-0.002 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR--ASSSVYASL 529 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~l 529 (784)
.++..+...+.+.|++++|...|..+....+.-+.....+..+..++.+.|+++.|...|+.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 356677888899999999999999998764211112345666889999999999999999999875321 225667888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcC
Q 003946 530 LKAYIEANRPREVTALLRDARSAG 553 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g 553 (784)
..++.+.|+.++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 889999999999999999998874
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.65 Score=50.27 Aligned_cols=202 Identities=10% Similarity=0.149 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVY--- 526 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~--- 526 (784)
|....-.+..++...|..++|.+.|-+- + .|.. .+..|...+++.+|.++-+...- |.+.+.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~---s---~pka-----Av~tCv~LnQW~~avelaq~~~l----~qv~tliak 915 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRR---S---LPKA-----AVHTCVELNQWGEAVELAQRFQL----PQVQTLIAK 915 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhc---c---CcHH-----HHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHH
Confidence 4455667788888889888888777542 2 2332 56777788888888776554321 111111
Q ss_pred -----------HHHHHHHHHcCChHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCC
Q 003946 527 -----------ASLLKAYIEANRPREVTALLRDARS----AGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPR 591 (784)
Q Consensus 527 -----------~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 591 (784)
---|..+-+.|+.-+|-+++.+|.+ ++.+|-..--.-++.++.- .+..++++-.+....+|...
T Consensus 916 ~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLv-E~h~~~ik~~~~~~~~g~~~ 994 (1189)
T KOG2041|consen 916 QAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLV-ENHRQTIKELRKIDKHGFLE 994 (1189)
T ss_pred HHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhcCcch
Confidence 1134566777888888888888843 3333322222222222221 12223333333333333211
Q ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHH
Q 003946 592 SGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL-GHLPNAQTFHS 670 (784)
Q Consensus 592 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ 670 (784)
+.. . +...+-..++..+.+..-.. ....+|-.|.+--...|.++.|++.--.+.+- .+-|....|+.
T Consensus 995 dat---~-----lles~~l~~~~ri~~n~Wrg----AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySl 1062 (1189)
T KOG2041|consen 995 DAT---D-----LLESGLLAEQSRILENTWRG----AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSL 1062 (1189)
T ss_pred hhh---h-----hhhhhhhhhHHHHHHhhhhh----HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHH
Confidence 100 0 11222222333333322211 12344555555556678888877754333221 25566677775
Q ss_pred HHHHHHHcC
Q 003946 671 MVTGYAAIG 679 (784)
Q Consensus 671 ll~a~~~~g 679 (784)
+.-+-+...
T Consensus 1063 lALaaca~r 1071 (1189)
T KOG2041|consen 1063 LALAACAVR 1071 (1189)
T ss_pred HHHHHhhhh
Confidence 554443333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.013 Score=47.38 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 003946 633 WNNVIHFFCKKRLMQDAEKALKRM 656 (784)
Q Consensus 633 y~~li~~~~~~g~~~~A~~~~~~m 656 (784)
+..+...+...|+.++|...+.+.
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333334444444444444444433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.043 Score=60.03 Aligned_cols=61 Identities=10% Similarity=0.021 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 631 HDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 631 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
..|.++...+...|++++|...+++..+. .|+...|..+...+...| +.++|...+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G-~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKG-DNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Confidence 44555555555556666666666666664 356666666666666666 66666666666654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.015 Score=58.55 Aligned_cols=145 Identities=16% Similarity=0.213 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 490 ALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE-ANRPREVTALLRDARSAGIQLDASCYEALLQSK 568 (784)
Q Consensus 490 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 568 (784)
+|..+|...-+.+.++.|+.+|.+..+.+ ..+..+|......-.. .++.+.|..+|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 46666666666666777777776666432 1123333333333222 34455567777666544 234555666666666
Q ss_pred HHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003946 569 IVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQD 648 (784)
Q Consensus 569 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~ 648 (784)
...++.+.|..+|++.... + +.... -...|...+.-=.+.|+++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l-~~~~~---------------------------------~~~iw~~~i~fE~~~Gdl~~ 125 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-L-PKEKQ---------------------------------SKKIWKKFIEFESKYGDLES 125 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-S-SCHHH---------------------------------CHHHHHHHHHHHHHHS-HHH
T ss_pred HHhCcHHHHHHHHHHHHHh-c-CchhH---------------------------------HHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666665543 1 21110 22356666666677777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHH
Q 003946 649 AEKALKRMRSLGHLPNAQTFHSMVT 673 (784)
Q Consensus 649 A~~~~~~m~~~g~~p~~~~~~~ll~ 673 (784)
+.++.+++.+. -|+...+..+++
T Consensus 126 v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 126 VRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHHHHHHHHH--hhhhhHHHHHHH
Confidence 77777777663 444333344443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.047 Score=50.51 Aligned_cols=82 Identities=10% Similarity=-0.007 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVT 673 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 673 (784)
.+..+...+...|++++|...|+......+-.++ ...|..+...|.+.|++++|...+++..+. .| +...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 3444444444455555555555544432211111 245666666777777777777777766653 34 3444445555
Q ss_pred HHHHcC
Q 003946 674 GYAAIG 679 (784)
Q Consensus 674 a~~~~g 679 (784)
.+...|
T Consensus 115 ~~~~~g 120 (172)
T PRK02603 115 IYHKRG 120 (172)
T ss_pred HHHHcC
Confidence 555555
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.94 E-value=1 Score=50.59 Aligned_cols=179 Identities=10% Similarity=0.007 Sum_probs=105.0
Q ss_pred hhhHHHHHHHHHHHHHhcccccCccch-HHHHHHH--HhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCc
Q 003946 141 SKWLEKAYGLVEQAFEEGKQILLEKEP-LIYLSLG--LSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGA 217 (784)
Q Consensus 141 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 217 (784)
....++|+....++.+. .|+. |...+.+ ..|.|+.++|..+++.....+.. |..|...+-.+|...
T Consensus 22 ~~qfkkal~~~~kllkk------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~---- 90 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDL---- 90 (932)
T ss_pred hHHHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHH----
Confidence 45566788888887776 3333 3334444 34788899998888877665444 777777777777775
Q ss_pred hhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHH
Q 003946 218 YLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHI 297 (784)
Q Consensus 218 ~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~ 297 (784)
+..++|..+++ +. .+.-|+..-...+..+|+|.+++.+-.+.-=+|.+ .++-+.+.+=++++.
T Consensus 91 ----~~~d~~~~~Ye--~~----------~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 91 ----GKLDEAVHLYE--RA----------NQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISL 153 (932)
T ss_pred ----hhhhHHHHHHH--HH----------HhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHH
Confidence 78888888888 55 44567766666777777787777654443333333 122344444445555
Q ss_pred HHhcC----------CHHHHHHHHHHHHhhc-CCChhhHHHHHHHHHHHHHhcCChhHHHHHHH
Q 003946 298 YERNG----------RREELRKLQRHIDEAV-NLSDIQFRQFYNCLLSCHLKFGDLNSASKMVL 350 (784)
Q Consensus 298 ~~~~g----------~~~~A~~l~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (784)
+.+.- -+..|.+.++.+.+.. ......- ..--....-..|+.++|.+++.
T Consensus 154 ilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE---~~Lyl~iL~~~~k~~eal~~l~ 214 (932)
T KOG2053|consen 154 ILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAE---IILYLLILELQGKYQEALEFLA 214 (932)
T ss_pred HHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHH---HHHHHHHHHhcccHHHHHHHHH
Confidence 44332 1334566666666553 2211111 1111223345566777777774
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.078 Score=53.62 Aligned_cols=144 Identities=13% Similarity=0.137 Sum_probs=85.1
Q ss_pred HHHHHHHHHhc-CcHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH
Q 003946 597 FEMLVKGCAQN-HEAGLMAKLLQEVKEGQRIDC----GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHL-----PNAQ 666 (784)
Q Consensus 597 ~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~p----~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~ 666 (784)
+..+...|... |+++.|.+.|+...+-..... -...+..+...+.+.|++++|.++|++....-.. ++..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33444455565 778888888876654321111 1345678888999999999999999998875322 2222
Q ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC--HHHHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCCCHH
Q 003946 667 -TFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD--EELLDSVLYTFVRG--GFFARANEVVAMMEEGKMFIDKY 741 (784)
Q Consensus 667 -~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~--~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~pd~~ 741 (784)
.|-..+-.+...| +...|...+++..... .++..+ ......|+.+|-.. ..+++|..-|+.+. +.|..
T Consensus 197 ~~~l~a~l~~L~~~-D~v~A~~~~~~~~~~~--~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~----~ld~w 269 (282)
T PF14938_consen 197 EYFLKAILCHLAMG-DYVAARKALERYCSQD--PSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS----RLDNW 269 (282)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHGTTS--TTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-------HH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC----ccHHH
Confidence 2223334556678 9999999999987632 234334 34566777777643 34667777776665 34555
Q ss_pred HHHHHH
Q 003946 742 KYRTLF 747 (784)
Q Consensus 742 ~~~~li 747 (784)
--..|+
T Consensus 270 ~~~~l~ 275 (282)
T PF14938_consen 270 KTKMLL 275 (282)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.023 Score=59.49 Aligned_cols=92 Identities=14% Similarity=0.008 Sum_probs=64.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
...+...|++++|+..|++..+.. .-+...|..+..+|...|++++|+..+++..... |.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCC
Confidence 345566777777777777777653 2355667777777777777777777777777654 6666677777777777777
Q ss_pred HHHHHHHHHHHHhcC
Q 003946 610 AGLMAKLLQEVKEGQ 624 (784)
Q Consensus 610 ~~~a~~~~~~~~~~~ 624 (784)
+++|...|+...+..
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 777777777776644
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.086 Score=57.75 Aligned_cols=74 Identities=9% Similarity=-0.005 Sum_probs=51.6
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003946 591 RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFH 669 (784)
Q Consensus 591 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 669 (784)
+.++..|..+.-.....|++++|...++.....+ |+...|..+...|...|+.++|.+.+++... +.|...||.
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~ 490 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLY 490 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHH
Confidence 4445566666555556677777777777777643 5677788888888888888888888887776 456555543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0033 Score=50.10 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=7.5
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 003946 637 IHFFCKKRLMQDAEKALK 654 (784)
Q Consensus 637 i~~~~~~g~~~~A~~~~~ 654 (784)
..+|.+.|++++|++.++
T Consensus 65 a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHh
Confidence 344444444444444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0034 Score=49.99 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCCHHHHHH
Q 003946 609 EAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA-QTFHSMVTGYAAIGGKYTEVTE 687 (784)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~~a~~ 687 (784)
+++.|..+++.+.+..+..|+...+-.+..+|.+.|++++|.+++++ .+ ..|+. .....+..+|...| ++++|+.
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~-~y~eAi~ 79 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLG-KYEEAIK 79 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhC-CHHHHHH
Confidence 34444444444443322111222333345555555555555555544 11 11221 22223344445555 5555555
Q ss_pred HHH
Q 003946 688 LWG 690 (784)
Q Consensus 688 ~~~ 690 (784)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.03 Score=51.85 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---------------CCHHHHHHH
Q 003946 629 GVHDWNNVIHFFCK-----KRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG---------------GKYTEVTEL 688 (784)
Q Consensus 629 ~~~~y~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g---------------~~~~~a~~~ 688 (784)
+-.+|..+|+.|.+ .|.++=....+..|.+-|+.-|..+|+.||+.+=+.. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 55667777777764 3566667777777777777778888888777654311 145668889
Q ss_pred HHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 003946 689 WGEMKSFASSTSMNFDEELLDSVLYTFVRGGFF-ARANEVVAMME 732 (784)
Q Consensus 689 ~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l~~~m~ 732 (784)
+++|.. .|+-||.+++..|++.+++.+.. .+..++.-.|.
T Consensus 126 L~qME~----~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 126 LEQMEN----NGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHH----cCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999988 79999999999999999887752 44455554444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.093 Score=48.54 Aligned_cols=82 Identities=9% Similarity=-0.056 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLD--ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG 603 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~ 603 (784)
+..+...|...|++++|...|++..+....+. ...+..+...+.+.|++++|+..+++..+.. |.+...+..+...
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 33344444444444444444444433221111 2334444444444455555555544444422 3333344444444
Q ss_pred HHhcCc
Q 003946 604 CAQNHE 609 (784)
Q Consensus 604 ~~~~~~ 609 (784)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.048 Score=50.25 Aligned_cols=62 Identities=6% Similarity=-0.211 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 597 FEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 597 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
+..+...+...|++++|...|+......+-.+ ...+|..+...|...|+.++|++.+++...
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444555555555544443221101 123556666666666666666666666655
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.83 Score=44.79 Aligned_cols=54 Identities=15% Similarity=-0.004 Sum_probs=29.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHc
Q 003946 498 CISLGWLDQAHDLLDEMHLAGVRASSSVY---ASLLKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 498 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
+.+.|++++|.+.|+.+...-.. +.... -.+..+|-+.+++++|...+++..+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34556666666666666654221 12221 23445556666666666666666554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.071 Score=55.76 Aligned_cols=102 Identities=13% Similarity=0.070 Sum_probs=83.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003946 458 VKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN 537 (784)
Q Consensus 458 i~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 537 (784)
...+...|++++|++.|.+..+.. +-+...|..+..+|.+.|++++|...++...+.. +.+...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 445668899999999999999876 5677788888899999999999999999998875 336778888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 538 RPREVTALLRDARSAGIQLDASCYEALL 565 (784)
Q Consensus 538 ~~~~A~~~~~~m~~~g~~p~~~t~~~li 565 (784)
++++|...|++..+. .|+.......+
T Consensus 85 ~~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 999999999998875 45544444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.61 Score=41.98 Aligned_cols=69 Identities=19% Similarity=0.155 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 520 RASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 520 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
.|++..--.|..++.+.|+..+|...|++...--+.-|......+.++....+++..|...++++.+.+
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 466777777788888888888888888877654455577777777777777788888888887776654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.039 Score=53.54 Aligned_cols=101 Identities=12% Similarity=0.023 Sum_probs=76.6
Q ss_pred HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003946 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
+.+.+++++|+..|.+.++.. |.+.+.|..-..+|.+.|.++.|.+-.+....-++ .-..+|..|-.+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp--~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP--HYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHccCcHH
Confidence 445678888888888887754 77788888888888888888888887777766432 13567888888888889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003946 648 DAEKALKRMRSLGHLPNAQTFHSMVTG 674 (784)
Q Consensus 648 ~A~~~~~~m~~~g~~p~~~~~~~ll~a 674 (784)
+|++.|++.++ +.|+..+|-.=+..
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 99888888887 67887777654443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.085 Score=45.34 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHH
Q 003946 698 STSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEG-KMFIDKYKYRTLF 747 (784)
Q Consensus 698 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~~~~~li 747 (784)
...+.|+..+..+++.+|+..|++..|.++++...+. +++.+..+|..|+
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3567899999999999999999999999999988865 7888899999999
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.16 Score=43.24 Aligned_cols=105 Identities=13% Similarity=0.055 Sum_probs=66.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHH
Q 003946 637 IHFFCKKRLMQDAEKALKRMRSLGHLPN--AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYT 714 (784)
Q Consensus 637 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~ 714 (784)
-.++-..|+.++|+.+|++....|.... ...+-.+-.++...| ++++|..++++.....++... +......+.-+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG-~~deA~~~L~~~~~~~p~~~~--~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG-RYDEALALLEEALEEFPDDEL--NAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCccc--cHHHHHHHHHH
Confidence 4456677888888888888888776554 335556667777888 888888888877653222111 22223334457
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003946 715 FVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFL 748 (784)
Q Consensus 715 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~ 748 (784)
+...|+.++|.+++-.... ++...|.--|.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~ 114 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIR 114 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 7778888888888766553 33335544443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.19 Score=42.72 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=8.4
Q ss_pred HHcCChHHHHHHHHHHHHcC
Q 003946 534 IEANRPREVTALLRDARSAG 553 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~g 553 (784)
-..|+.++|+.+|++....|
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~g 31 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAG 31 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcC
Confidence 33444444444444444433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=1.1 Score=43.93 Aligned_cols=81 Identities=11% Similarity=0.020 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAAL---GHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVY 526 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 526 (784)
+...+-.....+.+.|++++|.+.|+++.... +-..... -.+..++.+.+++++|...++...+.-..-...-+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y---P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY---PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 44444445556678999999999999998875 2222222 34567788999999999999999976433222334
Q ss_pred HHHHHHH
Q 003946 527 ASLLKAY 533 (784)
Q Consensus 527 ~~li~~~ 533 (784)
...+.+.
T Consensus 108 a~Y~~g~ 114 (243)
T PRK10866 108 VLYMRGL 114 (243)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.19 Score=44.52 Aligned_cols=91 Identities=12% Similarity=-0.022 Sum_probs=52.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 529 LLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
+..-+...|++++|..+|+-+.... .-+..-|-.|-.++-..|++++|+..|....... |+++..+-.+..++...|
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHcC
Confidence 3344456666666666666665442 1234445555555556666666666666665544 555556666666666666
Q ss_pred cHHHHHHHHHHHHh
Q 003946 609 EAGLMAKLLQEVKE 622 (784)
Q Consensus 609 ~~~~a~~~~~~~~~ 622 (784)
+.+.|.+.|+....
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.067 Score=53.83 Aligned_cols=270 Identities=11% Similarity=-0.015 Sum_probs=161.6
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHH--Hc--CCC-CCHHHHHHHH
Q 003946 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDA----ALGHVITLCISLGWLDQAHDLLDEMH--LA--GVR-ASSSVYASLL 530 (784)
Q Consensus 460 ~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~--~~--g~~-~~~~~~~~li 530 (784)
-+++.|+......+|+...+.| .-|.. +|.-|.++|.-.+++++|++++..=. .+ |-+ -.......|-
T Consensus 26 RLck~gdcraGv~ff~aA~qvG---TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG---TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc---chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 4789999999999999999888 34443 46667788888899999998875322 11 100 0122233344
Q ss_pred HHHHHcCChHHHHHHHHHH----HHcCCC-CCHHHHHHHHHHHHHcCC--------------------hhHHHHHHHHh-
Q 003946 531 KAYIEANRPREVTALLRDA----RSAGIQ-LDASCYEALLQSKIVQKD--------------------TPGALHLFKEM- 584 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m----~~~g~~-p~~~t~~~li~~~~~~g~--------------------~~~A~~~~~~m- 584 (784)
+.+--.|.+++|...-.+= .+.|-+ .....+-.+-..|...|+ ++.|.++|.+-
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 4444556666654432221 111100 122334444455543331 23344444432
Q ss_pred ---HhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHH---hcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 585 ---KESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK---EGQR-IDCGVHDWNNVIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 585 ---~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~-~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 657 (784)
.+.|-.-..-..|..|...|.-.|+++.|....+.-. +..+ -......+..|..++.-.|+++.|.+.++.-.
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 2222111222356777777777888998887654321 1221 11123568888999999999999999887654
Q ss_pred hC----CCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003946 658 SL----GHL-PNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASST-SMNFDEELLDSVLYTFVRGGFFARANEVVAMM 731 (784)
Q Consensus 658 ~~----g~~-p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 731 (784)
.. |-+ ....+..+|-.+|.-.. .+++|+.++.+-.....+. ...-....|.+|.++|...|..++|+...+.-
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~-e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLK-EVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 32 222 23456667888888888 8999998887644322111 12224567889999999999999998877665
Q ss_pred Hh
Q 003946 732 EE 733 (784)
Q Consensus 732 ~~ 733 (784)
.+
T Consensus 342 l~ 343 (639)
T KOG1130|consen 342 LR 343 (639)
T ss_pred HH
Confidence 53
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=2.1 Score=46.52 Aligned_cols=132 Identities=13% Similarity=0.029 Sum_probs=81.2
Q ss_pred CCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHH
Q 003946 178 CGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFN 257 (784)
Q Consensus 178 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~ 257 (784)
-|++++|.+++-+|-++ |. .|..+.+. |++-....+++.|.-+ ..-+--..+|+
T Consensus 747 ~g~feeaek~yld~drr----DL-----Aielr~kl--------gDwfrV~qL~r~g~~d---------~dD~~~e~A~r 800 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRR----DL-----AIELRKKL--------GDWFRVYQLIRNGGSD---------DDDEGKEDAFR 800 (1189)
T ss_pred hcchhHhhhhhhccchh----hh-----hHHHHHhh--------hhHHHHHHHHHccCCC---------cchHHHHHHHH
Confidence 58899999999888765 21 12222222 6666666666522111 01122245788
Q ss_pred HHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHH
Q 003946 258 IALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHL 337 (784)
Q Consensus 258 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~ 337 (784)
.+-..++....+++|.+.|..-. |. ...+.++-+..++++-+.+-..+++... ..-.+.+++.
T Consensus 801 ~ig~~fa~~~~We~A~~yY~~~~------~~---e~~~ecly~le~f~~LE~la~~Lpe~s~--------llp~~a~mf~ 863 (1189)
T KOG2041|consen 801 NIGETFAEMMEWEEAAKYYSYCG------DT---ENQIECLYRLELFGELEVLARTLPEDSE--------LLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc------ch---HhHHHHHHHHHhhhhHHHHHHhcCcccc--------hHHHHHHHHH
Confidence 88888888888888888886532 11 1345666666677766666655554322 3556777788
Q ss_pred hcCChhHHHHHHHHH
Q 003946 338 KFGDLNSASKMVLEM 352 (784)
Q Consensus 338 ~~g~~~~A~~~~~~m 352 (784)
+.|.-++|.+.|-+.
T Consensus 864 svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLRR 878 (1189)
T ss_pred hhchHHHHHHHHHhc
Confidence 888888887766443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.063 Score=49.47 Aligned_cols=63 Identities=11% Similarity=-0.054 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 524 SVYASLLKAYIEANRPREVTALLRDARSAGIQL--DASCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
..|..+...+...|++++|...|++.......+ ...+|..+-..+...|+.++|+..+++...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445555555555555555554332111 123455555555555555555555555544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.2 Score=44.38 Aligned_cols=91 Identities=5% Similarity=-0.018 Sum_probs=52.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003946 456 KLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE 535 (784)
Q Consensus 456 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 535 (784)
.+-.-+...|++++|..+|+....-+ +-+..-|-.|--+|-..|++++|...|........ -|...+-.+..++..
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 34444556666666666666665554 33333444455555556666666666666665542 355555556666666
Q ss_pred cCChHHHHHHHHHHH
Q 003946 536 ANRPREVTALLRDAR 550 (784)
Q Consensus 536 ~g~~~~A~~~~~~m~ 550 (784)
.|+.+.|.+-|+...
T Consensus 116 lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 116 CDNVCYAIKALKAVV 130 (157)
T ss_pred cCCHHHHHHHHHHHH
Confidence 666666666666554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.023 Score=42.42 Aligned_cols=52 Identities=12% Similarity=0.038 Sum_probs=21.3
Q ss_pred HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003946 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK 621 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 621 (784)
+.+.|++++|+..|++..+.. |.+...+..+..++...|++++|...|+.+.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444433 3333334444444444444444444444333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.022 Score=43.01 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=8.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 003946 636 VIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 636 li~~~~~~g~~~~A~~~~~~m~ 657 (784)
+..+|.+.|++++|.++++++.
T Consensus 31 la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 31 LAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHHHHHTT-HHHHHHHHHCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333333333333
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.15 Score=48.36 Aligned_cols=61 Identities=5% Similarity=0.010 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003946 491 LGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARS 551 (784)
Q Consensus 491 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 551 (784)
.++++..+...|.+.-....++++.+...+.++.....|...-.+.|+.+.|...|++..+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555566666666677776665555666666777777777777777777776643
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.8 Score=46.27 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC--H
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQ---VSHDDA-ALGHVITLCISLGWLDQAHDLLDEMHLA--GVRAS--S 523 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~--~ 523 (784)
..+..+...+.+.|++++|.++|++....... ...+.. .|...+-.+...|++..|.+.|+..... ++..+ .
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 35566777788888888888888887654310 011121 2233334555667888888888777644 23222 3
Q ss_pred HHHHHHHHHHHHc--CChHHHHHHHHHHH
Q 003946 524 SVYASLLKAYIEA--NRPREVTALLRDAR 550 (784)
Q Consensus 524 ~~~~~li~~~~~~--g~~~~A~~~~~~m~ 550 (784)
.....||.+|-.. ..+..|..-|+.+.
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 3445556665432 23555555555554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.032 Score=42.14 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=24.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003946 500 SLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 500 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
+.|++++|.++|+.+.... +-|...+-.+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555554442 114444444555555555555555555555443
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.35 Score=48.96 Aligned_cols=302 Identities=15% Similarity=0.091 Sum_probs=167.2
Q ss_pred hHHHHHH--HhhhcCChhHHHHHHHhhhhCCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHH--HHhh---cCCChh
Q 003946 255 TFNIALA--GCLLFETTRKAEQLLDIMPRIGVKADS----NLLIIMAHIYERNGRREELRKLQRH--IDEA---VNLSDI 323 (784)
Q Consensus 255 ~~~~ll~--~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~l~~~--~~~~---~~~~~~ 323 (784)
++...+. -+|+.|+.+....+|+..++.|- -|. .+|..|.++|.-.+++++|.+.+.. ...+ +.....
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA 95 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA 95 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence 4444443 36899999999999999999883 344 4577778888888999999987644 1111 111111
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccc
Q 003946 324 QFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHI 403 (784)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (784)
. +...|-+.+--.|.+++|+....+-..-...--..+.++..+.+. ..+...--.|.....++..
T Consensus 96 K---ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNl-----gnvYhakGk~~g~~~pee~------- 160 (639)
T KOG1130|consen 96 K---SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNL-----GNVYHAKGKCTGLEAPEEK------- 160 (639)
T ss_pred c---ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhh-----hhhhhhcccccCCCChhhc-------
Confidence 0 233455555667888888776655443221111111211111100 0000000011111111100
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----HH
Q 003946 404 LSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKA----EK 479 (784)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~ 479 (784)
.....++..++............+.+.. +.-..--..|..|-+.|--.|+++.|+...+.- ++
T Consensus 161 ------------g~f~~ev~~al~~Av~fy~eNL~l~~~l-gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e 227 (639)
T KOG1130|consen 161 ------------GAFNAEVTSALENAVKFYMENLELSEKL-GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE 227 (639)
T ss_pred ------------ccccHHHHHHHHHHHHHHHHHHHHHHHh-hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH
Confidence 1112334444444333322222222110 000111245666777777778999888765442 22
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--
Q 003946 480 ENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHL----AGV-RASSSVYASLLKAYIEANRPREVTALLRDARSA-- 552 (784)
Q Consensus 480 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 552 (784)
-|. -...-..+..+.+++.-.|+++.|.+.|..-.. .|- .......-+|.+.|.-..++++|+.++.+=...
T Consensus 228 fGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 228 FGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred hhh-HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 231 122334577788899999999999998876542 221 123455667888888888899999988764321
Q ss_pred ---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 553 ---GIQLDASCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 553 ---g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
...-....+-+|-.+|...|..++|+.+.+.-.+
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1122456788889999999999999887765443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.05 Score=41.18 Aligned_cols=60 Identities=13% Similarity=0.064 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC-cHHHHHHHHHHH
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH-EAGLMAKLLQEV 620 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~ 620 (784)
.+|..+-..+...|++++|+..|++..+.. |.+...|..+..++...| ++++|.+.++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 344444444444444444444444444433 344444444444444444 344444444433
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.12 Score=44.38 Aligned_cols=81 Identities=12% Similarity=0.112 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-------------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKE-------------NLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHL- 516 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 516 (784)
..++..+|-++++.|+.+....+++..-.- +.+..|+..+..+++.+|+..|++..|.++.+...+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 456778888888888888887777664211 112344444444444444444444444444444332
Q ss_pred cCCCCCHHHHHHHHH
Q 003946 517 AGVRASSSVYASLLK 531 (784)
Q Consensus 517 ~g~~~~~~~~~~li~ 531 (784)
.+++.+..+|..|+.
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 233333444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.78 E-value=1.4 Score=39.76 Aligned_cols=135 Identities=13% Similarity=0.005 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHH
Q 003946 555 QLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWN 634 (784)
Q Consensus 555 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~ 634 (784)
.|++..--.|..+..+.|+..+|...|++.. .|+...+....-.+.++....++...|...++.+.+-++-..+..+.-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 5777777788888999999999999998876 466667777777888888888888888888888877553222222344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003946 635 NVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMK 693 (784)
Q Consensus 635 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~ 693 (784)
.+...|...|+...|+.-|+...+. -|+...-...-.-+.+.| +.+++..-+..+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qg-r~~ea~aq~~~v~ 220 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQG-RLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhc-chhHHHHHHHHHH
Confidence 5667778888888888888887773 555443333333345556 6666555444443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.1 Score=38.03 Aligned_cols=138 Identities=14% Similarity=0.211 Sum_probs=77.2
Q ss_pred cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003946 571 QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAE 650 (784)
Q Consensus 571 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~ 650 (784)
.|.+++..++..+.... .+..-++-++--....-+-+-..+.++.+-.-..+.|-. -...+|.+|++.|.
T Consensus 15 dG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~----- 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK----- 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT------
T ss_pred hchHHHHHHHHHHHcCc----CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc-----
Confidence 46666666766666553 223345555444444445555555566655543221111 12334444444432
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003946 651 KALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAM 730 (784)
Q Consensus 651 ~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 730 (784)
+..-+...+.+....| +-|.-.++...+.+ +-.+++...-.+..+|.+-|...++.+++++
T Consensus 85 -------------~se~vD~ALd~lv~~~-kkDqLdki~~~l~k-----n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 85 -------------LSEYVDLALDILVKQG-KKDQLDKIYNELKK-----NEEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT--HHHHHHHHHHH----------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred -------------hHHHHHHHHHHHHHhc-cHHHHHHHHHHHhh-----ccCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3344456677788888 88888888888764 3457888888888999999999999999999
Q ss_pred HHhCCCC
Q 003946 731 MEEGKMF 737 (784)
Q Consensus 731 m~~~g~~ 737 (784)
.-++|++
T Consensus 146 ACekG~k 152 (161)
T PF09205_consen 146 ACEKGLK 152 (161)
T ss_dssp HHHTT-H
T ss_pred HHHhchH
Confidence 8888864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.69 E-value=4.5 Score=44.78 Aligned_cols=111 Identities=13% Similarity=0.094 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGY 675 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 675 (784)
+.+--+.-+...|+..+|.++-.+.+- ||-..|--=+.+++..+++++-+++-+.+. .+.-|.-+..+|
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 455556667777888888877766653 677788888899999999988777666554 256677789999
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003946 676 AAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMM 731 (784)
Q Consensus 676 ~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 731 (784)
.+.| +.++|.+++-+... .. -.+.+|.+.|++.+|.++--+-
T Consensus 755 ~~~~-n~~EA~KYiprv~~---------l~----ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 755 LKQG-NKDEAKKYIPRVGG---------LQ----EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred Hhcc-cHHHHhhhhhccCC---------hH----HHHHHHHHhccHHHHHHHHHHh
Confidence 9999 99999888765533 11 4678888999988888765443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=3.1 Score=42.28 Aligned_cols=253 Identities=13% Similarity=0.046 Sum_probs=164.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPRE 541 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 541 (784)
.-.|+++.|.+-|+.|.... ..-.--...|.-..-+.|+.+.|+++-+..-+.- +--...+...+...|..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~dP---EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDDP---ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcCh---HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 34689999999999997432 1111122333333447888888888887776553 2235678889999999999999
Q ss_pred HHHHHHHHHHcC-CCCCHH--HHHHHHHHHHH---cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHH
Q 003946 542 VTALLRDARSAG-IQLDAS--CYEALLQSKIV---QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAK 615 (784)
Q Consensus 542 A~~~~~~m~~~g-~~p~~~--t~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 615 (784)
|+++++.-++.. +.+|+. .-..|+.+-.. .-+...|...-.+..+. .|+-.-.-..-..++.+.|++.++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 999999775432 345543 23344443332 23556666665555443 24433345555678889999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003946 616 LLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL-GHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMK 693 (784)
Q Consensus 616 ~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~ 693 (784)
+++.+-+.. .+|++ + .+..+.+.|+. ++.-+++.... .++|| ...-..+..+-...| ++..|..--+...
T Consensus 285 ilE~aWK~e-PHP~i--a--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~-e~~~ARa~Aeaa~ 356 (531)
T COG3898 285 ILETAWKAE-PHPDI--A--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAG-EFSAARAKAEAAA 356 (531)
T ss_pred HHHHHHhcC-CChHH--H--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc-chHHHHHHHHHHh
Confidence 999988765 44554 2 23345666653 33333332221 15665 455556677777778 8888877776665
Q ss_pred hcccCCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 003946 694 SFASSTSMNFDEELLDSVLYTFVRG-GFFARANEVVAMMEEG 734 (784)
Q Consensus 694 ~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~ 734 (784)
. ..|....|-.|.+.-... |+-.++..++-+..+.
T Consensus 357 r------~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 357 R------EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred h------hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4 678888888888877666 9999999998888764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.11 Score=46.57 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCHHHH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMH-----LAGVRASSSVY 526 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~~~ 526 (784)
....++..+...|++++|..+...+.... +.|...|..+|.+|...|+...|.++|+.+. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 55667778888999999999999998887 7788889999999999999999999998875 35888877654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.085 Score=39.89 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLG-WLDQAHDLLDEMHL 516 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 516 (784)
+.+|..+...+.+.|++++|+..|.+..+.. +.+...|..+..+|.+.| ++++|.+.++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456666666677777777777777766655 445556666666666666 56666666666554
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.49 E-value=2.4 Score=40.35 Aligned_cols=61 Identities=11% Similarity=-0.017 Sum_probs=39.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003946 457 LVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA 517 (784)
Q Consensus 457 li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 517 (784)
....+.+.|++.+|...|+.+....+.-+--....-.+..++.+.|+++.|...++...+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445667888888888888887664211222234455667777888888888888887765
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.21 Score=48.62 Aligned_cols=86 Identities=8% Similarity=-0.043 Sum_probs=44.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHH
Q 003946 534 IEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLM 613 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 613 (784)
.+.+++.+|+..|.+.++.. .-|.+-|..=..+|.+.|..+.|++-.+...... |....+|..|..+|...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHHHH
Confidence 34455555555555554432 1244444445555555555555555554444432 44445555555555555555555
Q ss_pred HHHHHHHHh
Q 003946 614 AKLLQEVKE 622 (784)
Q Consensus 614 ~~~~~~~~~ 622 (784)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 555555554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.067 Score=39.91 Aligned_cols=55 Identities=11% Similarity=-0.034 Sum_probs=29.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003946 296 HIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 296 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
..+.+.|++++|.+.|+.+.+..+.+.. .|..+..++.+.|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPE----AWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHH----HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455556666666666665554322222 455555666666666666666655554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.61 Score=50.01 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=50.7
Q ss_pred hhHHHHHHHhhhcCChh--HHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 003946 254 NTFNIALAGCLLFETTR--KAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNC 331 (784)
Q Consensus 254 ~~~~~ll~~~~~~g~~~--~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 331 (784)
.-+++.=.+|.+.++.. +-+.-+++|++.|-.|+..... ..|+-.|.+.+|.++|.+--. -|.
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~~G~------------enR 663 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKRSGH------------ENR 663 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHHcCc------------hhh
Confidence 35666677777766554 3444567788888778876654 347778899999888865321 233
Q ss_pred HHHHHHhcCChhHHHHHH
Q 003946 332 LLSCHLKFGDLNSASKMV 349 (784)
Q Consensus 332 li~~~~~~g~~~~A~~~~ 349 (784)
.+.+|-....++.|.++.
T Consensus 664 AlEmyTDlRMFD~aQE~~ 681 (1081)
T KOG1538|consen 664 ALEMYTDLRMFDYAQEFL 681 (1081)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444555555555555544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.27 E-value=4.1 Score=41.67 Aligned_cols=126 Identities=12% Similarity=0.138 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGY 675 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 675 (784)
+.+..+.-|...|....|.++-.+.+ + |+-.-|-..|.+|+..+++++-.++... +-++..|..++.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 45555667777888777777655553 3 7888899999999999999887765432 12457888899999
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 003946 676 AAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKT 753 (784)
Q Consensus 676 ~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~ 753 (784)
...| +.++|..+..++. +..-+..|.+.|++.+|.+.--+.+ |......+.....++
T Consensus 248 ~~~~-~~~eA~~yI~k~~--------------~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 248 LKYG-NKKEASKYIPKIP--------------DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPGN 304 (319)
T ss_pred HHCC-CHHHHHHHHHhCC--------------hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCCC
Confidence 9988 8888888776632 2456778889999999988766654 666666666544443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.39 Score=47.49 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDA----SCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
|...+..+.+.|++++|...|+...+. .|+. ..+-.+...|...|++++|...|+.+.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333334445555555555555443 2322 2333444444444555555555444443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.18 Score=49.38 Aligned_cols=124 Identities=14% Similarity=0.136 Sum_probs=98.3
Q ss_pred ccccccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhc
Q 003946 79 MGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEG 158 (784)
Q Consensus 79 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 158 (784)
+...+..+|.|..-|..|-+.|...|+++.|..-|.+..+..+ +++..+..+-.++..+.+...-.++..++.++...
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 3444566788999999999999999999999999999888653 44556666667777666677777888999998886
Q ss_pred ccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHH
Q 003946 159 KQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILA 208 (784)
Q Consensus 159 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 208 (784)
. ..++....+|...+...|++.+|...|+.|.+. .|....+..+|.
T Consensus 223 D--~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 223 D--PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred C--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 2 235666777888999999999999999999986 455666777775
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.7 Score=36.89 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR 520 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 520 (784)
......++.+...|.-++..+++.++.+.+ .+++...-.+-.||.+.|+..++.+++.+..+.|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~---~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE---EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 344556777788888888888888877655 667777777888888888888888888888888754
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.3 Score=48.32 Aligned_cols=101 Identities=12% Similarity=0.043 Sum_probs=78.6
Q ss_pred hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHH
Q 003946 253 TNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADS----NLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQF 328 (784)
Q Consensus 253 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~ 328 (784)
...|...+....+.|++++|+..|+.+++.- |+. ..+--+...|...|++++|...|+.+.+..+.+... ...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~-~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA-ADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hHH
Confidence 3457777766677899999999999999853 554 467788899999999999999999998763332211 114
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 003946 329 YNCLLSCHLKFGDLNSASKMVLEMLQRA 356 (784)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 356 (784)
+-.+...|.+.|+.++|...|++..+..
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 6667778889999999999999988753
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.1 Score=40.00 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=8.4
Q ss_pred HHHcCChhHHHHHHHHhHh
Q 003946 568 KIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~ 586 (784)
|.+.+++++|+++++.+..
T Consensus 5 ~~~~~~~~~A~~~~~~~l~ 23 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALE 23 (73)
T ss_pred HHhCCCHHHHHHHHHHHHH
Confidence 3344444444444444444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.06 E-value=4.6 Score=41.10 Aligned_cols=201 Identities=11% Similarity=-0.024 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHH--HHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDA--ALGHVITLCIS---LGWLDQAHDLLDEMHLAGVRASSSV 525 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~--~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~ 525 (784)
.-.+.+.+...+..|+++.|+++++.-+.... +.++.. .-..|+.+-.. .-+...|...-.+..+ +.||..-
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-ie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvP 264 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRAAKV-IEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVP 264 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccch
Confidence 36788899999999999999999998776542 455553 23334433322 2345556655554444 4566443
Q ss_pred H-HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc-CCCCCcHHHHHHHHHH
Q 003946 526 Y-ASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES-KIPRSGHQEFEMLVKG 603 (784)
Q Consensus 526 ~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~~ll~~ 603 (784)
- ..-..+|.+.|++.++-.+++.+.+....|+. +. +..+.+.| +.++.-++...+. ...|++....-++..+
T Consensus 265 aav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~a 338 (531)
T COG3898 265 AAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEA 338 (531)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 2 33457789999999999999999988555543 22 22233444 3444444443331 2447777777888888
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC
Q 003946 604 CAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK-RLMQDAEKALKRMRSLGHLP 663 (784)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p 663 (784)
-...|++..|..--+.... ..|....|-.|.+.-... |+-.++...+.+-.+.--.|
T Consensus 339 Alda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 339 ALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 8888888877766666554 446777787777766544 88888888888877653333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.15 Score=45.70 Aligned_cols=75 Identities=13% Similarity=0.204 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc-CCCCCCCHHHHH
Q 003946 632 DWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFAS-STSMNFDEELLD 709 (784)
Q Consensus 632 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~-~~~~~p~~~~~~ 709 (784)
....++..+...|++++|..+.+++... .| |...|..+|.+|...| +...|.+.|+.+.+... +.|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g-~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQG-RRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4555666666677777777777777664 33 5666667777777777 77777777766654333 346777666543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.18 Score=39.25 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhh---cCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003946 289 NLLIIMAHIYERNGRREELRKLQRHIDEA---VNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
.+++.+...|.+.|++++|...|++..+. ..+.......+++.+..+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46677777788888888888887776543 1212112234688888888888888888888877655
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.93 E-value=3.4 Score=39.60 Aligned_cols=133 Identities=8% Similarity=0.052 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL- 530 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li- 530 (784)
...+.++..+.-.|.+.-....+.+..+.. -+.++.....+++.-.+.|+.+.|...|+...+..-+.|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~--~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYY--PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhC--CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 445667777777788888888999988876 36677778888888889999999999999887654445555555444
Q ss_pred ----HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 531 ----KAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 531 ----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
..|.-++++..|...|.++.... ..|...-|.-.-+..-.|+...|++..+.|...
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555678888888888887654 234555454433444458888898888888765
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.079 Score=41.30 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 666 QTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSM-NFD-EELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 666 ~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
.+|+.+...|...| ++++|+..+++..+.....|- .|+ ..++..+...|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELG-RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666 777777666666554222221 122 4456677777777777777777776654
|
... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.24 Score=47.54 Aligned_cols=103 Identities=13% Similarity=0.130 Sum_probs=74.1
Q ss_pred CCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHH
Q 003946 178 CGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFN 257 (784)
Q Consensus 178 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~ 257 (784)
.+.++--...+..|.+.|+..|..+|+.||..+-+. .+ .|..+ +-
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg---------------------kf-------------iP~nv-fQ 129 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG---------------------KF-------------IPQNV-FQ 129 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc---------------------cc-------------ccHHH-HH
Confidence 355666666788899999999999999999866552 33 33222 22
Q ss_pred HHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhh
Q 003946 258 IALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGR-REELRKLQRHIDEA 317 (784)
Q Consensus 258 ~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~-~~~A~~l~~~~~~~ 317 (784)
.+.-.|- ..-.-++.++++|..+|+.||..+--.|++++++.+- ..+..++.-.|.+-
T Consensus 130 ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPkf 188 (406)
T KOG3941|consen 130 KVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPKF 188 (406)
T ss_pred HHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhhh
Confidence 2222332 2345689999999999999999999999999999886 44555666666653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.9 Score=42.41 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCHHHH
Q 003946 485 SHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN---RPREVTALLRDARSAGIQLDASCY 561 (784)
Q Consensus 485 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~ 561 (784)
+-|...|..|...|...|+.+.|..-|....+.. .+|...+..+..++.... ...++..+|+++.+.. .-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 3344445555555555555555555555444432 223444444433333221 1334445555544432 1133333
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 562 EALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
.-|-..+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 33444444455555555555554443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.51 E-value=4.5 Score=38.46 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=43.9
Q ss_pred HHHhhhcCChhHHHHHHHhhhhCCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCh
Q 003946 260 LAGCLLFETTRKAEQLLDIMPRIGV--KADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSD 322 (784)
Q Consensus 260 l~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~ 322 (784)
...+.+.|++.+|+..|+.+....- +--....-.++.++-+.|+++.|...++...+..+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 3445678999999999999987521 11124556778889999999999999999888744433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.22 E-value=7.7 Score=39.94 Aligned_cols=167 Identities=10% Similarity=-0.072 Sum_probs=102.6
Q ss_pred CCHHHHHHHH-HHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003946 449 PTEKIYIKLV-KAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCI--SLGWLDQAHDLLDEMHLAGVRASSSV 525 (784)
Q Consensus 449 p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~ 525 (784)
|...+|-.+- .++...|++++|...-....+.. ..+. +..++++.+ -.++.+.|...|++-++.+ |+-..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~ 238 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQK 238 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhh
Confidence 3334444433 24567788888888777776655 2222 444554443 4667788888888777654 43322
Q ss_pred HHH-------------HHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC
Q 003946 526 YAS-------------LLKAYIEANRPREVTALLRDARSA---GIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKI 589 (784)
Q Consensus 526 ~~~-------------li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 589 (784)
-.. =-+-..+.|++..|.+.+.+.+.. .+.|++..|........+.|++++|+.--++..+..
T Consensus 239 sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD- 317 (486)
T KOG0550|consen 239 SKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID- 317 (486)
T ss_pred HHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-
Confidence 211 123356788899999999888654 344566667777777888899999988887766532
Q ss_pred CCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 003946 590 PRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ 624 (784)
Q Consensus 590 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 624 (784)
+.-...|..-..++...++|++|.+-|+...+..
T Consensus 318 -~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 318 -SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2222222223334455677888888777766544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.20 E-value=2 Score=37.96 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003946 493 HVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEA 536 (784)
Q Consensus 493 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 536 (784)
.+|..+...+.......+++.+...+. .+...+|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 355555555556666666666555542 4555555666666554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.11 E-value=6.5 Score=41.65 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGIQ-LDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLV 601 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll 601 (784)
..+-..|..++-+.|+.++|.+.|.+|.+.... -+......|+.++...+...++..++.+--+...+......|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 344445666666778888888888777653211 1234566777777777777777777777554444444455566554
Q ss_pred H
Q 003946 602 K 602 (784)
Q Consensus 602 ~ 602 (784)
-
T Consensus 339 L 339 (539)
T PF04184_consen 339 L 339 (539)
T ss_pred H
Confidence 3
|
The molecular function of this protein is uncertain. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.93 E-value=3.5 Score=44.60 Aligned_cols=213 Identities=13% Similarity=0.191 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 453 IYIKLVKAFLEAGKTK--ELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
.++..=.+|.+..+.. +.+.-+++|+++| -.|+... +...|+-.|++.+|-++|.+ .|.. |--+
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg--e~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAl 665 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRG--ETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRAL 665 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcC--CCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHH
Confidence 4455556676665543 4555567788888 3688763 33556667889998888864 3322 1223
Q ss_pred HHHHHcCChHHHHHHH------------HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH-----h-H--hcCCC
Q 003946 531 KAYIEANRPREVTALL------------RDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKE-----M-K--ESKIP 590 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~------------~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~-----m-~--~~~~~ 590 (784)
.+|.....++.|.+++ ++-.+ ...|..-=.+....+...|+.++|..+.-+ | . .+.+.
T Consensus 666 EmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld 743 (1081)
T KOG1538|consen 666 EMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD 743 (1081)
T ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc
Confidence 3444444444444333 22110 000111111223344455666666554321 1 1 11122
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----
Q 003946 591 RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ---- 666 (784)
Q Consensus 591 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 666 (784)
..+..+...+..-+.+...+..|.++|.+|-. ..++++.....+++++|..+-++.++ +.||..
T Consensus 744 ~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pya 811 (1081)
T KOG1538|consen 744 KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYA 811 (1081)
T ss_pred hhhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHH
Confidence 33344555555556666777788888888864 35778888999999999999988776 456543
Q ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 667 -------TFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 667 -------~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
-|...-.||.++| +-.+|.++++++..
T Consensus 812 qwLAE~DrFeEAqkAfhkAG-r~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 812 QWLAENDRFEEAQKAFHKAG-RQREAVQVLEQLTN 845 (1081)
T ss_pred HHhhhhhhHHHHHHHHHHhc-chHHHHHHHHHhhh
Confidence 2344446788888 88888888888865
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=1.2 Score=46.79 Aligned_cols=63 Identities=13% Similarity=0.012 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 629 GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ----TFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 629 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
+...|+.+..+|.+.|++++|+..|++.++ +.|+.. +|..+..+|...| +.++|...+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LG-r~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYRE-EGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 467899999999999999999999999887 999853 5888999999999 99999999999887
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.46 Score=45.66 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 502 GWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN----------------RPREVTALLRDARSAGIQLDASCYEALL 565 (784)
Q Consensus 502 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~g~~p~~~t~~~li 565 (784)
+.++-....++.|.+.|+..|..+|+.|++.+-+-. +-+=+++++++|...|+.||-.+-..|+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 445555555666666666666666666666543321 2234678889999999999999999999
Q ss_pred HHHHHcCCh
Q 003946 566 QSKIVQKDT 574 (784)
Q Consensus 566 ~~~~~~g~~ 574 (784)
+++++.+..
T Consensus 166 n~FGr~~~p 174 (406)
T KOG3941|consen 166 NAFGRWNFP 174 (406)
T ss_pred HHhcccccc
Confidence 998876643
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.54 Score=35.87 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=27.1
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003946 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA 517 (784)
Q Consensus 460 ~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 517 (784)
.|.+.+++++|.++++.+...+ +.+...+......+.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD---PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC---cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555443 333444444444555555555555555555543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.53 E-value=10 Score=39.05 Aligned_cols=231 Identities=10% Similarity=-0.004 Sum_probs=127.0
Q ss_pred CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 486 HDDAALGHVI-TLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAY--IEANRPREVTALLRDARSAGIQLDASCYE 562 (784)
Q Consensus 486 p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 562 (784)
|.-.++-.+- ..+.-.|+.++|..+--.+++.. ..-.+...+++. --.++.+.|..-|++-+.. .||-..-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHH
Confidence 4444444433 33446778888887777776653 222333344333 2356778888888877654 34443322
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHH
Q 003946 563 ALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQR--IDCGVHDWNNVIHFF 640 (784)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~p~~~~y~~li~~~ 640 (784)
.+- .-.+.++.+.+.| .-..+.|++..|.+.+.+....++ ..|+...|-......
T Consensus 241 ~~~----------~~~k~le~~k~~g-------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~ 297 (486)
T KOG0550|consen 241 SAS----------MMPKKLEVKKERG-------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN 297 (486)
T ss_pred hHh----------hhHHHHHHHHhhh-------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhh
Confidence 211 1122333344433 234567788888888887776543 456677788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHH--HHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHh
Q 003946 641 CKKRLMQDAEKALKRMRSLGHLPNAQT-FHSMVT--GYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVR 717 (784)
Q Consensus 641 ~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~--a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~ 717 (784)
.+.|++++|+.--++..+. |..- ...+.+ ++...+ +|++|.+-+++..+.... .-...++--...++-+
T Consensus 298 ~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le-~~e~AV~d~~~a~q~~~s---~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 298 IRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALE-KWEEAVEDYEKAMQLEKD---CEIRRTLREAQLALKK 369 (486)
T ss_pred cccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccc---cchHHHHHHHHHHHHH
Confidence 9999999999988888763 4322 222222 344456 788888888776652211 1122333333334433
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 003946 718 GGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYHKT 753 (784)
Q Consensus 718 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~ 753 (784)
..+ ..=.+++---......|+...|.-+-...|-+
T Consensus 370 SkR-kd~ykilGi~~~as~~eikkayrk~AL~~Hpd 404 (486)
T KOG0550|consen 370 SKR-KDWYKILGISRNASDDEIKKAYRKLALVHHPD 404 (486)
T ss_pred hhh-hhHHHHhhhhhhcccchhhhHHHHHHHHhCCC
Confidence 322 22233333333333455666666554444433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.37 E-value=3.7 Score=44.73 Aligned_cols=107 Identities=10% Similarity=0.065 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC-----HHHHHHHHHHHHH----cCChH
Q 003946 471 THFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAG-VRAS-----SSVYASLLKAYIE----ANRPR 540 (784)
Q Consensus 471 ~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~-----~~~~~~li~~~~~----~g~~~ 540 (784)
..+|.-+..- +||. +..+++..+-.||-+.+.+.+.+-.+.+ +.-. ...|...+..++. ....+
T Consensus 177 ~G~f~L~lSl---LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 177 FGLFNLVLSL---LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHh---CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 3445555433 3443 3467777777788888888887766533 2211 1233333333333 34566
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCChhHHHHHHHHhH
Q 003946 541 EVTALLRDARSAGIQLDASCYEALLQ-SKIVQKDTPGALHLFKEMK 585 (784)
Q Consensus 541 ~A~~~~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~A~~~~~~m~ 585 (784)
.|.++++.+.+. -|+...|...-. .+...|++++|++.|++..
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 777777777765 566666655443 3345677777777777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.94 Score=47.44 Aligned_cols=65 Identities=17% Similarity=0.012 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcH---HHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 003946 557 DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGH---QEFEMLVKGCAQNHEAGLMAKLLQEVKEG 623 (784)
Q Consensus 557 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 623 (784)
+...|+.+-.+|...|++++|+..|++..+.. |++. .+|..+..+|.+.|+.++|.+.++...+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45677777778888888888888887777654 5544 34777777777777777777777777663
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.34 E-value=10 Score=38.38 Aligned_cols=118 Identities=11% Similarity=0.146 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCC-
Q 003946 610 AGLMAKLLQEVKEGQRI--DCGVHDWNNVIHFFCKKRL----MQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGK- 681 (784)
Q Consensus 610 ~~~a~~~~~~~~~~~~~--~p~~~~y~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~- 681 (784)
...+..+|+.|++..+. .++-..+..|+.. ..++ .++++.+|+.+.+.|+..+ ..-+.+-+-++......
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 44556666666665542 3455566666554 3333 3567778888888887774 32333334444432202
Q ss_pred -HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCC----hHHHHHHHHHHHh
Q 003946 682 -YTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGF----FARANEVVAMMEE 733 (784)
Q Consensus 682 -~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~ 733 (784)
...+..+++.+++ .++++...+|..+.-...-.+. .++..++.+...+
T Consensus 197 ~v~r~~~l~~~l~~----~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~ 249 (297)
T PF13170_consen 197 KVARVIELYNALKK----NGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDELKE 249 (297)
T ss_pred HHHHHHHHHHHHHH----cCCccccccccHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 2356677777777 6788777777766433332222 3344444444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.31 E-value=4.9 Score=35.46 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAY 533 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 533 (784)
...+|..+.+.+....+..+++.+...+ ..+...++.++..|++.+ .+...+.+.. . .+.+-....+..|
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~---~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c 79 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN---SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLC 79 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC---ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHH
Confidence 3467888888899999999999998887 467778999999999864 4444444442 1 2334444567777
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH
Q 003946 534 IEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQ-KDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA 605 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 605 (784)
.+.+.++++.-++.++.. |...+..+... ++.+.|++++.+ +.++..|..++..|.
T Consensus 80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~-------~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK-------QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh-------CCCHHHHHHHHHHHH
Confidence 777777777777766631 11222223333 667777776664 123445555555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.25 E-value=3.8 Score=44.66 Aligned_cols=132 Identities=20% Similarity=0.150 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHH-----HHH----HcCCHHHHHHHHHHHHHcCCCCCHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVIT-----LCI----SLGWLDQAHDLLDEMHLAGVRASSS 524 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~-----~~~----~~g~~~~a~~~~~~m~~~g~~~~~~ 524 (784)
...+++...-.|+-+.+++.+.+..+.+. +.-...+...+.- .++ ...+.+.|.++++.+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~-i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSEN-IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 44677777788888888888888766442 3333322222211 111 134567788888888876 46766
Q ss_pred HHHHH-HHHHHHcCChHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 525 VYASL-LKAYIEANRPREVTALLRDARSAG--I-QLDASCYEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 525 ~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
.|... ...+...|++++|.+.|++..... . +.....+--+.-.+.-.+++++|.+.|..+.+..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 66443 344566788888888888754210 0 1112223333444555566666666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.19 E-value=10 Score=38.10 Aligned_cols=165 Identities=10% Similarity=0.091 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHcCCh---hHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 003946 559 SCYEALLQSKIVQKDT---PGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNN 635 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~ 635 (784)
.++..++.+|...+.. ++|.++++.+.... |+.+..+..-+..+.+.++.+.+.+.+..|...... ....+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~--~e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH--SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc--ccchHHH
Confidence 4566777788776654 45666777775554 344557777788888888899999999988876431 2234555
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHH-H-HHHHH---HHHcC-----CCHHHHHHHHHHHHhcccCCCCC
Q 003946 636 VIHFF---CKKRLMQDAEKALKRMRSLGHLPNAQTF-H-SMVTG---YAAIG-----GKYTEVTELWGEMKSFASSTSMN 702 (784)
Q Consensus 636 li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~-~ll~a---~~~~g-----~~~~~a~~~~~~m~~~~~~~~~~ 702 (784)
++..+ .... ...|...+..+....+.|....| . .++.- ....+ +.++....+++.+.+. .+.+
T Consensus 161 ~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~---~~~~ 236 (278)
T PF08631_consen 161 ILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS---LGKQ 236 (278)
T ss_pred HHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHH---hcCC
Confidence 55555 3333 45677777777666566665411 1 11111 11111 0144555555544332 2233
Q ss_pred CCHHHHHHH-------HHHHHhcCChHHHHHHHHHH
Q 003946 703 FDEELLDSV-------LYTFVRGGFFARANEVVAMM 731 (784)
Q Consensus 703 p~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m 731 (784)
.+..+-.++ ...+.+++++++|.++++--
T Consensus 237 ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 237 LSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 343333322 34456788999999998744
|
It is also involved in sporulation []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=6.9 Score=41.33 Aligned_cols=61 Identities=8% Similarity=-0.058 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003946 557 DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQE 619 (784)
Q Consensus 557 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 619 (784)
|......+-.+....++.+.|...|++....+ |+...+|......+...|+.++|.+.++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33443333333344444444444444444433 34333343333334444444444444444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=4.9 Score=42.42 Aligned_cols=114 Identities=10% Similarity=0.091 Sum_probs=81.6
Q ss_pred ChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003946 573 DTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKA 652 (784)
Q Consensus 573 ~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~ 652 (784)
+..+|.++-+...+.+ +.|+.....+..+....++++.|..+|+.....++..++...|..++ ..-+|+.++|.+.
T Consensus 319 ~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~--~~~~G~~~~a~~~ 394 (458)
T PRK11906 319 AAQKALELLDYVSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV--HFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH--HHHcCCHHHHHHH
Confidence 4556777777777766 78888888888888999999999999999998665444444444444 4667999999999
Q ss_pred HHHHHhCCCCCCH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 653 LKRMRSLGHLPNA---QTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 653 ~~~m~~~g~~p~~---~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
+++..+ ..|.. ......++.|+..+ .++|..++-+-.+
T Consensus 395 i~~alr--LsP~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 435 (458)
T PRK11906 395 IDKSLQ--LEPRRRKAVVIKECVDMYVPNP--LKNNIKLYYKETE 435 (458)
T ss_pred HHHHhc--cCchhhHHHHHHHHHHHHcCCc--hhhhHHHHhhccc
Confidence 999665 35643 33334455666655 7788877755433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.84 E-value=19 Score=42.48 Aligned_cols=105 Identities=19% Similarity=0.145 Sum_probs=56.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcH
Q 003946 531 KAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEA 610 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~ 610 (784)
+.+...+.+++|.-.|+..-+ ..--+.+|-..|+|++|+.+..++.... ..-..+-..|..-+...++.
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~--de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK--DELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHHHcccc
Confidence 333445666666666654421 1123556667777777777777664321 00011224566666667766
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003946 611 GLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKR 655 (784)
Q Consensus 611 ~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 655 (784)
-+|-++..+.... +.--+..|++...+++|..+...
T Consensus 1016 ~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1016 YEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred hhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 6666666655532 23344555666666666665443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.57 E-value=3.1 Score=39.43 Aligned_cols=213 Identities=13% Similarity=0.035 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHH
Q 003946 91 AKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIY 170 (784)
Q Consensus 91 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 170 (784)
..|-.-..+|....+++.|-.-+.+..+ +...+...|+ + .+..++|.-++.++-+. .--.+.|..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh----A------AKayEqaamLake~~kl----sEvvdl~eK 96 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH----A------AKAYEQAAMLAKELSKL----SEVVDLYEK 96 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH----H------HHHHHHHHHHHHHHHHh----HHHHHHHHH
Confidence 3444455566666777777666655443 1111222221 1 12233444444444332 112344566
Q ss_pred HHHHHhhCCCCccHHHHHHHHhhc--CCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccC
Q 003946 171 LSLGLSKCGLPVPASTILRKLVAT--EQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIA 248 (784)
Q Consensus 171 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~ 248 (784)
....|..+|.++.|--.+++.-+. .+.|+... +.+..++.+++ .=+.
T Consensus 97 As~lY~E~GspdtAAmaleKAak~lenv~Pd~Al-------------------qlYqralavve--~~dr---------- 145 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAKALENVKPDDAL-------------------QLYQRALAVVE--EDDR---------- 145 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHH-------------------HHHHHHHHHHh--ccch----------
Confidence 778899999999998888875432 35555432 55566666665 2110
Q ss_pred CCCchhhHHHHHHHhhhcCChhHHHHHHHhhh----hCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChh
Q 003946 249 MKPNTNTFNIALAGCLLFETTRKAEQLLDIMP----RIGVKADS-NLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDI 323 (784)
Q Consensus 249 ~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~----~~g~~pd~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 323 (784)
.+--..-+..+-+++.+...+++|-..|..-. +..--++. ..|...|-.|.-..++..|++.++.-...+.....
T Consensus 146 ~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s 225 (308)
T KOG1585|consen 146 DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS 225 (308)
T ss_pred HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh
Confidence 11112245556667778888887765443322 11112333 34556666677778999999999884443222222
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHH
Q 003946 324 QFRQFYNCLLSCHLKFGDLNSASKMVL 350 (784)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (784)
....+...|+.+|- .|+.+++..++.
T Consensus 226 ed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 226 EDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 22226888888885 688887777654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=92.49 E-value=6.3 Score=40.84 Aligned_cols=124 Identities=11% Similarity=0.009 Sum_probs=71.7
Q ss_pred HHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcc-cccCccchHHHHHHHHhh---CCCCccH
Q 003946 109 AWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGK-QILLEKEPLIYLSLGLSK---CGLPVPA 184 (784)
Q Consensus 109 A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~---~g~~~~A 184 (784)
..+.+.+|...=..|...+-..++.-+....+..+++....+++.+..... ...-.+.+--....++.+ .|+.++|
T Consensus 122 l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~A 201 (374)
T PF13281_consen 122 LAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKA 201 (374)
T ss_pred HHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHH
Confidence 334444444432234444545555655555678888888888888755410 011122222224556667 8999999
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHhhcCC-CchhhHHHHHHhhhhhc
Q 003946 185 STILRKLVATEQYPPVTAWSAILAHMSLTAP-GAYLAAELILEIGYLFQ 232 (784)
Q Consensus 185 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~~~~~~~~~a~~~~~ 232 (784)
++++..+....-.++..+|..+-..|-..-. +........++|+..+.
T Consensus 202 l~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~ 250 (374)
T PF13281_consen 202 LQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYR 250 (374)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHH
Confidence 9999997766667788888877766643210 01112244666666665
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.30 E-value=3.8 Score=44.01 Aligned_cols=159 Identities=11% Similarity=0.069 Sum_probs=98.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 459 KAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANR 538 (784)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 538 (784)
....-.++++++.+....-.--. -.| ..-.+.++.-+-+.|..+.|.++-.+-.. -.+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~--~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP--NIP-KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG--G---HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc--cCC-hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCC
Confidence 34456788888777665221111 123 33477788888888988888887654321 2345568888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003946 539 PREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQ 618 (784)
Q Consensus 539 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 618 (784)
++.|.++-++. .+...|..|-......|+++-|.+.|++.. -|..|+-.|.-.|+.+.-.++.+
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----------d~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK----------DFSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----------CccccHHHHHHhCCHHHHHHHHH
Confidence 88888765443 467788999888888899999888887643 36667777777787777777776
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003946 619 EVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKR 655 (784)
Q Consensus 619 ~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 655 (784)
.....+. +|....++.-.|+.++..+++.+
T Consensus 398 ~a~~~~~-------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 398 IAEERGD-------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHTT--------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHccC-------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6665542 56666667777777777776653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.06 E-value=15 Score=37.16 Aligned_cols=132 Identities=9% Similarity=0.177 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----ChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCCh
Q 003946 504 LDQAHDLLDEMHLAGVRASSSVYASLLKAYIE--AN----RPREVTALLRDARSAGI---QLDASCYEALLQSKIVQKDT 574 (784)
Q Consensus 504 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~~ 574 (784)
+++...+++.|.+.|+.-+.++|-+..-.... .. ....|..+|+.|++.-. .++...+..|+.. ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788888888888777776553333332 22 25678888888877532 2355566666554 22222
Q ss_pred ----hHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--HHH
Q 003946 575 ----PGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRL--MQD 648 (784)
Q Consensus 575 ----~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~--~~~ 648 (784)
+.+..+|+.+.+.|..+.+. ......++........ ..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~-----------------------------------LQ~LS~iLaL~~~~~~~~v~r 200 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGND-----------------------------------LQFLSHILALSEGDDQEKVAR 200 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcH-----------------------------------HHHHHHHHHhccccchHHHHH
Confidence 34555666666656544332 2222222222222111 457
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 649 AEKALKRMRSLGHLPNAQTFHSMV 672 (784)
Q Consensus 649 A~~~~~~m~~~g~~p~~~~~~~ll 672 (784)
+.++++.+.+.|+++....|..+.
T Consensus 201 ~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 201 VIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHcCCccccccccHHH
Confidence 888899999999888777766543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.97 E-value=15 Score=36.83 Aligned_cols=152 Identities=10% Similarity=-0.027 Sum_probs=104.1
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCh
Q 003946 463 EAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA---GVRASSSVYASLLKAYIEANRP 539 (784)
Q Consensus 463 ~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~ 539 (784)
-.|+..+|...++++.+.. +.|...+.-.=.+|.-.|+.+.-...++.+... +++-..++-..+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d~---PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY---PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHhC---chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4678888888899998775 778777887888999999999888888888754 2222233334445556688999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC---CCCcHHHHHHHHHHHHhcCcHHHHHHH
Q 003946 540 REVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKI---PRSGHQEFEMLVKGCAQNHEAGLMAKL 616 (784)
Q Consensus 540 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~ 616 (784)
++|++.-++..+.+ +.|.-.-.++...+-..|+..++.++..+-...-- ....+-.|...+ .+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHH
Confidence 99999988887665 45666777777778888899999887765332110 001111222222 23344789999999
Q ss_pred HHH
Q 003946 617 LQE 619 (784)
Q Consensus 617 ~~~ 619 (784)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 864
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=91.79 E-value=5.3 Score=35.78 Aligned_cols=49 Identities=14% Similarity=0.088 Sum_probs=20.3
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 003946 535 EANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEM 584 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 584 (784)
..|++++|..+|.-+...+. -|..-|..|-.++-..+++++|+..|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A 97 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVA 97 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444433221 12233333333444444444444444433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.73 E-value=11 Score=37.31 Aligned_cols=121 Identities=16% Similarity=0.146 Sum_probs=61.8
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 003946 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRP 539 (784)
Q Consensus 460 ~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 539 (784)
.....|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+...--.........-|..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 4456677777777777766554 2233345556667777777777777777665432111111112223334444444
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 540 REVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 540 ~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
.+...+-.+.-. .| |...-..+...+...|+.++|++.+-.+.+
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 443444444333 33 444444555555555666666555444444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.67 E-value=14 Score=39.38 Aligned_cols=163 Identities=9% Similarity=-0.019 Sum_probs=92.1
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHH
Q 003946 463 EAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREV 542 (784)
Q Consensus 463 ~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 542 (784)
+..+...-++.-++..+. .||-.+.- ++-+--.+..+.++.++|++..+.|- ..+. +.......
T Consensus 180 RERnp~aRIkaA~eALei----~pdCAdAY-ILLAEEeA~Ti~Eae~l~rqAvkAgE----~~lg-------~s~~~~~~ 243 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEI----NPDCADAY-ILLAEEEASTIVEAEELLRQAVKAGE----ASLG-------KSQFLQHH 243 (539)
T ss_pred hcCCHHHHHHHHHHHHHh----hhhhhHHH-hhcccccccCHHHHHHHHHHHHHHHH----Hhhc-------hhhhhhcc
Confidence 445555555555555543 34443221 22233345568889988888776541 1111 11000111
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003946 543 TALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 543 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 622 (784)
-..++.+..+...|-...-..+..++-+.|+.++|++.+++|.+..-..+.......|+.++...+.+.++..++.+-.+
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 11122222222233333444566667788999999999999987542223455778889999999999999999988764
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q 003946 623 GQRIDCGVHDWNNVIHFFC 641 (784)
Q Consensus 623 ~~~~~p~~~~y~~li~~~~ 641 (784)
....+.-...|+..+-.+-
T Consensus 324 i~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 324 ISLPKSATICYTAALLKAR 342 (539)
T ss_pred ccCCchHHHHHHHHHHHHH
Confidence 3322233566776554433
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.52 E-value=15 Score=36.22 Aligned_cols=147 Identities=13% Similarity=0.012 Sum_probs=91.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 003946 495 ITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDT 574 (784)
Q Consensus 495 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 574 (784)
.......|++.+|..+|+......-. +...--.+..+|...|+.+.|..++..+...--.........=|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34556788999999999988876432 45566678899999999999999999886432122222222233444444444
Q ss_pred hHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 003946 575 PGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRL 645 (784)
Q Consensus 575 ~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~ 645 (784)
.+...+-.+.-. .|++...-..+...+...|+.+.|.+.+-.+..++.-.-|...-..|+..+.-.|.
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 444444443332 26666667777777777777777776655555443333344455666666655553
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.50 E-value=2.1 Score=42.31 Aligned_cols=81 Identities=12% Similarity=0.179 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-cccCCCCCCCHHHH
Q 003946 631 HDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKS-FASSTSMNFDEELL 708 (784)
Q Consensus 631 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~-~~~~~~~~p~~~~~ 708 (784)
.++..++..+...|+.+.+.+.++++... .| |...|..+|.+|.+.| +...|+..++.+.+ ...+.|+.|.+.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g-~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNG-RQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcC-CchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 46788899999999999999999999885 44 7889999999999999 99999999998877 55667888888887
Q ss_pred HHHHHH
Q 003946 709 DSVLYT 714 (784)
Q Consensus 709 ~~li~~ 714 (784)
..+...
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 776666
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.48 E-value=17 Score=36.59 Aligned_cols=102 Identities=17% Similarity=0.072 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTK---ELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYAS 528 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 528 (784)
.++..++.+|...+..+ +|..+++.+....+ -...++..-+..+.+.++.+.+.+++..|...- ......+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~---~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYG---NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC---CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 57778888888887665 56667777765542 224446566777777899999999999999763 213344555
Q ss_pred HHHHH---HHcCChHHHHHHHHHHHHcCCCCCH
Q 003946 529 LLKAY---IEANRPREVTALLRDARSAGIQLDA 558 (784)
Q Consensus 529 li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~ 558 (784)
++..+ .... ...|...++.+....+.|..
T Consensus 161 ~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCCh
Confidence 55544 3333 35566666666554445444
|
It is also involved in sporulation []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.48 E-value=2.2 Score=41.44 Aligned_cols=86 Identities=9% Similarity=-0.013 Sum_probs=37.3
Q ss_pred CChhHHHHHHHHhHhcCCCCCcH---HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhcCCHH
Q 003946 572 KDTPGALHLFKEMKESKIPRSGH---QEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGV-HDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 572 g~~~~A~~~~~~m~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~y~~li~~~~~~g~~~ 647 (784)
|++..|...|...++.. |.+. ..+--|..++...|++++|..+|..+.+.++-.|.. ..+--|.....+.|+.+
T Consensus 155 gdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 155 GDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred CCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34455555554444432 2111 123334444444444444444444444443322221 23344444445555555
Q ss_pred HHHHHHHHHHhC
Q 003946 648 DAEKALKRMRSL 659 (784)
Q Consensus 648 ~A~~~~~~m~~~ 659 (784)
+|..+|++..+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.34 E-value=22 Score=37.76 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
|....-+++..+.++....-+..+-.+|..-| .+...|-.++..|... ..+.-..+++.+.+..+. |++.-.-|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~----e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG----ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 44444455555555555555555555555444 2333445555555554 334445555555554432 33333333
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 003946 530 LKAYIEANRPREVTALLRDARS 551 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~ 551 (784)
..-|-+ ++.+.+..+|.+...
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHH
Confidence 333333 455555555555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.11 E-value=9.1 Score=41.20 Aligned_cols=158 Identities=12% Similarity=0.155 Sum_probs=104.1
Q ss_pred HHHHHcCCHHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 496 TLCISLGWLDQAHDLLD--EMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKD 573 (784)
Q Consensus 496 ~~~~~~g~~~~a~~~~~--~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 573 (784)
....-.++++.+.+..+ ++.. .+ ...-.+.++.-+-+.|..+.|+.+...-.. =.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCC
Confidence 34445677887666654 1221 12 245578899999999999999987554321 1234457799
Q ss_pred hhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003946 574 TPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKAL 653 (784)
Q Consensus 574 ~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~ 653 (784)
++.|.++.++ .++...|..|.......|+++.|++.|.+... |..|+-.|.-.|+.+.-.++.
T Consensus 334 L~~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 334 LDIALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHHHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHH
Confidence 9999887654 33567999999999999999999999998875 788999999999998888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003946 654 KRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEM 692 (784)
Q Consensus 654 ~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m 692 (784)
+.....|- ++.-+.++.-.| +.++..+++.+-
T Consensus 397 ~~a~~~~~------~n~af~~~~~lg-d~~~cv~lL~~~ 428 (443)
T PF04053_consen 397 KIAEERGD------INIAFQAALLLG-DVEECVDLLIET 428 (443)
T ss_dssp HHHHHTT-------HHHHHHHHHHHT--HHHHHHHHHHT
T ss_pred HHHHHccC------HHHHHHHHHHcC-CHHHHHHHHHHc
Confidence 77776641 455555566667 777766666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.09 E-value=21 Score=37.06 Aligned_cols=78 Identities=9% Similarity=-0.013 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 492 GHVITLCISLGWLDQAHDLLDEMHLAG---VRASSSVYASLLKAYIE---ANRPREVTALLRDARSAGIQLDASCYEALL 565 (784)
Q Consensus 492 ~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 565 (784)
..++-+|-...+++...++++.|.... +.-...+---..-++-+ .|+.++|.+++..+....-.++..+|..+-
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345556778888888888888887652 11122222233445556 788888888888865555566777776665
Q ss_pred HHHH
Q 003946 566 QSKI 569 (784)
Q Consensus 566 ~~~~ 569 (784)
..|-
T Consensus 225 RIyK 228 (374)
T PF13281_consen 225 RIYK 228 (374)
T ss_pred HHHH
Confidence 5543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.08 E-value=8.2 Score=33.72 Aligned_cols=80 Identities=13% Similarity=0.003 Sum_probs=54.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003946 457 LVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEA 536 (784)
Q Consensus 457 li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 536 (784)
-.....+.|++++|.+.|+.+..+-+.-+-....-..++.+|.+.+++++|...++..++.....--.-|.-.+.+++.-
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34445578899999999999887653123334456668888899999999999999888875332234555555555543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.05 E-value=22 Score=37.15 Aligned_cols=149 Identities=9% Similarity=0.061 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 003946 594 HQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFH-SMV 672 (784)
Q Consensus 594 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll 672 (784)
...|...+....+...++.|..+|-+..+..-..|++..++++|.-++ .|+..-|.++|+--... -||...|- -.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 457788888888888899999999999887767789999999999766 56778899999866553 46665554 455
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 003946 673 TGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYH 751 (784)
Q Consensus 673 ~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~ 751 (784)
.-+...+ +-+.|..+|+...++..+. --..+|..+|+-=..-|++..|..+=++|.+ +.|-..+...+..++.
T Consensus 474 ~fLi~in-de~naraLFetsv~r~~~~---q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRIN-DEENARALFETSVERLEKT---QLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhC-cHHHHHHHHHHhHHHHHHh---hhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 5666778 8899999999766532221 1266899999999999999999999999988 4788888777775444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.94 E-value=3.7 Score=39.90 Aligned_cols=99 Identities=16% Similarity=0.103 Sum_probs=77.1
Q ss_pred hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHH
Q 003946 253 TNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADS----NLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQF 328 (784)
Q Consensus 253 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~ 328 (784)
...|+..+..+ +.|++.+|...|...++.. |+. ..+=-|...+...|++++|..+|..+.+..+.+... .-.
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA-pda 217 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA-PDA 217 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC-hHH
Confidence 33688888765 6788999999999998864 332 344457899999999999999999998873222211 015
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003946 329 YNCLLSCHLKFGDLNSASKMVLEMLQR 355 (784)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (784)
.-.|..+..+.|+.++|...|++..++
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 788888999999999999999999885
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.93 E-value=16 Score=36.89 Aligned_cols=130 Identities=10% Similarity=-0.011 Sum_probs=64.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHH---
Q 003946 600 LVKGCAQNHEAGLMAKLLQEVKEGQR----IDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL----GHLPNAQTF--- 668 (784)
Q Consensus 600 ll~~~~~~~~~~~a~~~~~~~~~~~~----~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~--- 668 (784)
+..+....+.++.+.+.|+...+--. ..-...+|..|-..|.+..++++|.-+..+..+. ++.--..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 33444444455566655554432110 1112345666777777777777666554443321 221111122
Q ss_pred --HHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003946 669 --HSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DEELLDSVLYTFVRGGFFARANEVVAM 730 (784)
Q Consensus 669 --~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~ 730 (784)
..+..++...| ...+|.+.-++..+.....|-.+ -....-++.+.|...|+.+.|..=++.
T Consensus 208 ~lyhmaValR~~G-~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLG-RLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 22334566666 66666666666555332223222 123345666777777776666555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.68 E-value=4.7 Score=41.45 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 622 (784)
.+++.+..+|.+.+++.+|++.-+...... |++....-.-..+|...|+++.|...|+.+.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345666666677777777777766666544 55554444444555555555555555555554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.54 E-value=7.6 Score=39.98 Aligned_cols=97 Identities=11% Similarity=0.000 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVK 602 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~ 602 (784)
..+++.|.-+|.+.+++..|+..-+..+..+ .+|+-..--=-.+|...|+++.|+..|+.+++.. |.|...-+-++.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHH
Confidence 3466777788888888888888888887765 4566666666677788888888888888888754 777655555554
Q ss_pred HHHhcCcHHHH-HHHHHHHHh
Q 003946 603 GCAQNHEAGLM-AKLLQEVKE 622 (784)
Q Consensus 603 ~~~~~~~~~~a-~~~~~~~~~ 622 (784)
.-.+....... .++|..|-.
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 44444433332 445555543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=89.91 E-value=7.5 Score=34.86 Aligned_cols=89 Identities=9% Similarity=-0.023 Sum_probs=65.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 459 KAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANR 538 (784)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 538 (784)
.-+-+.|++++|..+|.-+..-+ +-+..-+..|-.+|-..+++++|...|......+. -|...+-....+|...|+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 34558899999999999888765 34444355555666678899999999987766543 244555566778888999
Q ss_pred hHHHHHHHHHHHH
Q 003946 539 PREVTALLRDARS 551 (784)
Q Consensus 539 ~~~A~~~~~~m~~ 551 (784)
.+.|...|+...+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988876
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.87 E-value=28 Score=36.43 Aligned_cols=150 Identities=13% Similarity=0.125 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAG-IQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLV 601 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll 601 (784)
..+|.+.++.-.+..-++.|..+|-+..+.| +.+++..++++|.-++. |+..-|..+|+--...- |++...-.-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC--CCchHHHHHHH
Confidence 5677788888888888999999999999888 67889999999998886 78888999988644432 56666677778
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003946 602 KGCAQNHEAGLMAKLLQEVKEGQRIDCG--VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679 (784)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 679 (784)
..+...++-+.|..+|+...++ +..+ ...|..||+--..-|++..|..+=++|.+ +.|...+...+..-|....
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhhc
Confidence 8888899999999999855443 1122 45799999988999999999999898887 4677777666666665544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.81 E-value=33 Score=38.95 Aligned_cols=179 Identities=14% Similarity=0.106 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCI----SLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
.....-++.+.+...++.|+.+-+. . ..|..+...+...|+ +.|++++|...|-+-... +.|.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~---~----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s----- 401 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKS---Q----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS----- 401 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHh---c----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----
Confidence 3455677778888888888776544 2 234444445554444 689999998877665433 2232
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
.+|.-|.+..++.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+.-. .|.. ..-....+..|.+.
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~---~fd~e~al~Ilr~s 476 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW---FFDVETALEILRKS 476 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce---eeeHHHHHHHHHHh
Confidence 3455666677777888888889888864 66666889999999999888777665543 3321 12356667777777
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 608 HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 657 (784)
+-.++|..+-..... .. ..+--.+-..|++++|++.+..+.
T Consensus 477 nyl~~a~~LA~k~~~------he---~vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 477 NYLDEAELLATKFKK------HE---WVLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred ChHHHHHHHHHHhcc------CH---HHHHHHHHHhcCHHHHHHHHhcCC
Confidence 777777766555543 12 222333456788999999988765
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.80 E-value=10 Score=33.16 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=40.1
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH
Q 003946 604 CAQNHEAGLMAKLLQEVKEGQRIDC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN--AQTFHSMVTGYA 676 (784)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~ 676 (784)
..+.|++++|.+.|+.+..+.+..| ....--.|+.+|.+.|++++|...+++.++. .|+ ..-|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL--hP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL--HPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCCCccHHHHHHHHH
Confidence 3445566666666666666554333 1234455667777777777777777777664 332 233444444444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.17 E-value=21 Score=33.99 Aligned_cols=124 Identities=15% Similarity=0.087 Sum_probs=65.1
Q ss_pred HHHHcCChhHHHHHHHHhHhcCCC-CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 003946 567 SKIVQKDTPGALHLFKEMKESKIP-RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRL 645 (784)
Q Consensus 567 ~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~ 645 (784)
.+...|+.+.|...+.+....... ......+......+...++.+.+...+.......... ....+..+-..+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-DAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-chHHHHHhhHHHHHccc
Confidence 344445555555555544331100 0122233333333445555666666665555533210 24556666777777777
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 646 MQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 646 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
.+.|...+...... .|+ ...+..+...+...+ ..+.+...+.+...
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELG-RYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 77777777777764 333 344444444555555 67777777777665
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.80 E-value=1.5 Score=29.38 Aligned_cols=27 Identities=15% Similarity=0.049 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 561 YEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 561 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
|..+...|...|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.75 E-value=24 Score=34.20 Aligned_cols=83 Identities=12% Similarity=0.023 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 486 HDDAALGHVITLCISLGWLDQAHDLLDEMHLAGV--RASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563 (784)
Q Consensus 486 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 563 (784)
|-...|+.-+.. .+.|++++|.+.|+.+...-. +-...+.-.++.++-+.+++++|...+++-...-......-|..
T Consensus 33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 334445544433 355677777777777664421 11234445555666666777777766666554322222234444
Q ss_pred HHHHHH
Q 003946 564 LLQSKI 569 (784)
Q Consensus 564 li~~~~ 569 (784)
.|.+++
T Consensus 112 YlkgLs 117 (254)
T COG4105 112 YLKGLS 117 (254)
T ss_pred HHHHHH
Confidence 444444
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.71 E-value=3.5 Score=40.55 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=69.9
Q ss_pred cCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCC--chhhHHHHHHHhhhcCChhH
Q 003946 194 TEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKP--NTNTFNIALAGCLLFETTRK 271 (784)
Q Consensus 194 ~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~ 271 (784)
.|....+.+...++..-... ..++++...+- +++.... ....| ..++|-.++.- -++++
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~--------~~idd~~~~Ly--KlRhs~~-----a~~~~~~~~~~~irlllk----y~pq~ 118 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSR--------EEIDDAEYYLY--KLRHSPN-----AWYLRNWTIHTWIRLLLK----YDPQK 118 (418)
T ss_pred cCCCcceeehhhhhhccccc--------cchhHHHHHHH--HHhcCcc-----hhhhccccHHHHHHHHHc----cChHH
Confidence 44444555555555433322 56666666655 4433111 11123 23444444433 37789
Q ss_pred HHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003946 272 AEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEA 317 (784)
Q Consensus 272 A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 317 (784)
++.++..=+..|+-||.++++.+++.+.+.+++.+|.++.-.|...
T Consensus 119 ~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 119 AIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988777665
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.67 E-value=18 Score=32.73 Aligned_cols=58 Identities=7% Similarity=0.127 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 632 DWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 632 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
.+..++..+...|++-+|+++.+..... +......++.+-.+.+ +...-..+++-..+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~-D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSN-DDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 3677778888888888888888765332 1122244566666666 65554455544444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.61 E-value=21 Score=33.42 Aligned_cols=72 Identities=7% Similarity=0.117 Sum_probs=50.3
Q ss_pred cccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHh
Q 003946 82 TILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEE 157 (784)
Q Consensus 82 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 157 (784)
.+...|.-|.+||-+---+...|+++.|.+.|+...+.++.-+-...|.-|.-|. .++..-|.+-+.+....
T Consensus 91 aLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY----~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRYKLAQDDLLAFYQD 162 (297)
T ss_pred hhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee----cCchHhhHHHHHHHHhc
Confidence 3456778899999988888899999999999999998764333333354454443 24445566667766665
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.27 E-value=49 Score=37.15 Aligned_cols=111 Identities=12% Similarity=0.084 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVK 602 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~ 602 (784)
-.+.+--+.-+...|+..+|.++-.+.+ -||-..|-.=+.+++..+++++-.++-+.+.. +.-|.-...
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe 752 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVE 752 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHH
Confidence 3344455556667777777777777665 57777777777888877777776665544321 234666677
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003946 603 GCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALK 654 (784)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~ 654 (784)
+|.+.|+.++|.+++..... +.-.+.+|.+.|++.+|.++--
T Consensus 753 ~c~~~~n~~EA~KYiprv~~----------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG----------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhcccHHHHhhhhhccCC----------hHHHHHHHHHhccHHHHHHHHH
Confidence 77777777777776655542 1145667777777777666543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.87 E-value=6.1 Score=39.11 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHL-----AGVRASSSVYA 527 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~ 527 (784)
++..++..+...|+++.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d---p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD---PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 45556666666666666666666666655 55666666666666666666666666665553 35555554444
Q ss_pred HHH
Q 003946 528 SLL 530 (784)
Q Consensus 528 ~li 530 (784)
...
T Consensus 232 ~y~ 234 (280)
T COG3629 232 LYE 234 (280)
T ss_pred HHH
Confidence 333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.85 E-value=11 Score=34.89 Aligned_cols=99 Identities=14% Similarity=0.229 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCH---
Q 003946 631 HDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN--AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDE--- 705 (784)
Q Consensus 631 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~--- 705 (784)
..+..+..-|++.|+.++|.+.+.++.+....|. ...+-.+|..+...+ ++..+.....+....... +-.++.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~-d~~~v~~~i~ka~~~~~~-~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFG-DWSHVEKYIEKAESLIEK-GGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhc-cchHHHHHH
Confidence 4688999999999999999999999998755554 446677888888889 999999999988775433 121221
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 706 -ELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 706 -~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
..|..| .+...|++.+|.+.|-+...
T Consensus 115 lk~~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 115 LKVYEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHH--HHHHhchHHHHHHHHHccCc
Confidence 223333 23356799999999877753
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.32 E-value=8.9 Score=32.58 Aligned_cols=92 Identities=9% Similarity=-0.043 Sum_probs=53.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC--HHHHHHHHHHHH
Q 003946 639 FFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD--EELLDSVLYTFV 716 (784)
Q Consensus 639 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~--~~~~~~li~~~~ 716 (784)
+++..|+++.|++.|.+.+.. .+-....||.=..++.-.| +.++|..=+++..+.. |-... ...|..=...|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~-~~e~ALdDLn~AleLa---g~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQG-DDEEALDDLNKALELA---GDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcC-ChHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHH
Confidence 455667777777777666653 2225666666666676666 7777766666665532 22111 122333345566
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 003946 717 RGGFFARANEVVAMMEEGK 735 (784)
Q Consensus 717 ~~g~~~~A~~l~~~m~~~g 735 (784)
..|+-+.|..=|+..-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 6677677766666665554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.10 E-value=1.2 Score=29.91 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchh
Q 003946 90 PAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTL 127 (784)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~ 127 (784)
|..|..+.+.|...|++++|.++|++..+.. |+...
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~ 36 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALD--PDDPE 36 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHH
Confidence 4578889999999999999999999999865 65543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.00 E-value=17 Score=40.81 Aligned_cols=183 Identities=13% Similarity=0.002 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHH--HH-HHHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHc
Q 003946 467 TKELTHFLIKAEKENLQVSHDDAALGHVI--TL-CISLGWLDQAHDLLDEMHL-------AGVRASSSVYASLLKAYIEA 536 (784)
Q Consensus 467 ~~~a~~~~~~m~~~~~~~~p~~~~~~~li--~~-~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~ 536 (784)
...|...++.....|. .........+ .+ +....+++.|..+|+...+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4577888888877772 2222222222 33 4466789999999998877 55 334566677777764
Q ss_pred C-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH--hcC
Q 003946 537 N-----RPREVTALLRDARSAGIQLDASCYEALLQSKIV-QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA--QNH 608 (784)
Q Consensus 537 g-----~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~--~~~ 608 (784)
. +.+.|..++...-+.| .|+....-..+.-... ..+...|.++|....+.|..+ ...+..+.-..+ -..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~--A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL--AIYRLALCYELGLGVER 378 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH--HHHHHHHHHHhCCCcCC
Confidence 3 5677999999988887 4677666555554444 356789999999999888532 212222211111 223
Q ss_pred cHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003946 609 EAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGH 661 (784)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 661 (784)
+.+.|..++....+.+. |-..---..+..+.. ++.+.+.-.+..+.+.|.
T Consensus 379 ~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CHHHHHHHHHHHHHccC--hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 78888888888887762 221111222333344 777777777777776654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=85.09 E-value=2.1 Score=27.17 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 633 WNNVIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 633 y~~li~~~~~~g~~~~A~~~~~~m~ 657 (784)
|+.|...|.+.|++++|++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666777777777777776643
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=84.79 E-value=2.1 Score=27.17 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 707 LLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 707 ~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
+|..|...|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999998854
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.94 E-value=82 Score=35.67 Aligned_cols=95 Identities=9% Similarity=-0.032 Sum_probs=60.6
Q ss_pred HHHHHhhhhhccCCcCccccccccccCCCC---chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHH
Q 003946 222 ELILEIGYLFQDGRVDPRKKCNAPLIAMKP---NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIY 298 (784)
Q Consensus 222 ~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~ 298 (784)
+.+++|+...+ .. .|..| -.-.+...|..+.-.|++++|-.+.-.|.. -+..-|.-.+.-+
T Consensus 370 k~yeeAl~~~k--~~----------~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f 433 (846)
T KOG2066|consen 370 KKYEEALDAAK--AS----------IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKF 433 (846)
T ss_pred hHHHHHHHHHH--hc----------cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHh
Confidence 78888888776 44 33344 233577788888888999999888888764 2556666666666
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHh
Q 003946 299 ERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLK 338 (784)
Q Consensus 299 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~ 338 (784)
...++..+. +..++.....-.+. +|..++..|..
T Consensus 434 ~e~~~l~~I---a~~lPt~~~rL~p~---vYemvLve~L~ 467 (846)
T KOG2066|consen 434 AELDQLTDI---APYLPTGPPRLKPL---VYEMVLVEFLA 467 (846)
T ss_pred ccccccchh---hccCCCCCcccCch---HHHHHHHHHHH
Confidence 766666543 33333322211222 68888877776
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=83.80 E-value=32 Score=30.82 Aligned_cols=52 Identities=10% Similarity=0.035 Sum_probs=30.3
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 606 QNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
+.++.++++.+++.+.--.+-.|...++..++ +...|++.+|+.+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 34455666666666655443334444455444 46677777777777776654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.71 E-value=9.3 Score=30.91 Aligned_cols=60 Identities=8% Similarity=0.087 Sum_probs=44.2
Q ss_pred HHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 003946 271 KAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLS 334 (784)
Q Consensus 271 ~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~ 334 (784)
+..+-++.+....+.|++.+..+.+.+|-|.+++..|.++|+.++.+...... .|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~----~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE----IYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT----HHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH----HHHHHHH
Confidence 66667777788889999999999999999999999999999999887544432 3655543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.69 E-value=27 Score=29.85 Aligned_cols=55 Identities=25% Similarity=0.166 Sum_probs=37.6
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
+++..|+++.|++.|.+....- ......||.=..++.-.|+.++|++=+++..+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 5667777777777777765542 235667777777777777777777777666654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.21 E-value=42 Score=31.75 Aligned_cols=223 Identities=17% Similarity=0.078 Sum_probs=152.6
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHH
Q 003946 502 GWLDQAHDLLDEMHLAGVR-ASSSVYASLLKAYIEANRPREVTALLRDARSA-GIQLDASCYEALLQSKIVQKDTPGALH 579 (784)
Q Consensus 502 g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~ 579 (784)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4555555555555554322 13567777777888888888888888777642 223455666667777777778888888
Q ss_pred HHHHhHhcCCCCCcHHHHHHHHH-HHHhcCcHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 580 LFKEMKESKIPRSGHQEFEMLVK-GCAQNHEAGLMAKLLQEVKEGQRI-DCGVHDWNNVIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 580 ~~~~m~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 657 (784)
.+.........+ ......... .+...|+++.+...++......+. ......+......+...++.+++...+.+..
T Consensus 117 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDP--DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 888877654322 222333333 788999999999999988552210 1233445555555778899999999999998
Q ss_pred hCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 658 SLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD-EELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 658 ~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
... .. ....+..+-..+...+ +++.+...+...... .|+ ...+..+...+...|..+++...+.+....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLG-KYEEALEYYEKALEL------DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcc-cHHHHHHHHHHHHhh------CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 752 22 3677788888888888 999999999988762 232 445555666666777899999998888864
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.66 E-value=43 Score=31.49 Aligned_cols=163 Identities=12% Similarity=0.011 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 003946 560 CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHF 639 (784)
Q Consensus 560 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~ 639 (784)
.||-+---+...|+++.|.+.|+...+.. |....+.-.-.-++.-.|++..|.+-|...-+.++..|-...|--++.
T Consensus 101 vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E- 177 (297)
T COG4785 101 VFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE- 177 (297)
T ss_pred HHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-
Confidence 34444444455666666666666655543 333222222222334456666666666555555544443333433332
Q ss_pred HHhcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCC--CCCCHHHHHHHHHHHH
Q 003946 640 FCKKRLMQDAEK-ALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTS--MNFDEELLDSVLYTFV 716 (784)
Q Consensus 640 ~~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~--~~p~~~~~~~li~~~~ 716 (784)
..-++.+|.. +.++... .|..-|...|..|.- | ++. ...+++.++....+.. -+.-.+||--|..-|.
T Consensus 178 --~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-g-kiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 178 --QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-G-KIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred --hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-h-hcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 2234555543 3444443 355555555554443 2 221 2344555544211100 0012457777888888
Q ss_pred hcCChHHHHHHHHHHHhC
Q 003946 717 RGGFFARANEVVAMMEEG 734 (784)
Q Consensus 717 ~~g~~~~A~~l~~~m~~~ 734 (784)
..|+.++|..+|+-....
T Consensus 249 ~~G~~~~A~~LfKLaian 266 (297)
T COG4785 249 SLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 899999999999887754
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.65 E-value=14 Score=34.02 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CCH----H
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR---ASS----S 524 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---~~~----~ 524 (784)
..+..+..-|++.|+.+.|.+.|.++.........-...+-.+|..+...+++..+.....+....--. ++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 477888899999999999999999988765212222335677888888889998888887776643211 111 1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~ 550 (784)
+|..|. +...+++..|-+.|-+..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccC
Confidence 222221 223566777776666553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.47 E-value=50 Score=32.10 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
...|+.- ..-.+.|++++|.+.|+.+..+.+.-+-...+...++-++-+.++++.|....++..+.-....-.-|..-|
T Consensus 35 ~~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3445544 455688999999999999998764233445566667788889999999999999988654322233455555
Q ss_pred HHHH
Q 003946 531 KAYI 534 (784)
Q Consensus 531 ~~~~ 534 (784)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 5555
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=82.13 E-value=23 Score=31.20 Aligned_cols=113 Identities=9% Similarity=-0.009 Sum_probs=76.6
Q ss_pred CChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchh--HHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCcc
Q 003946 88 RDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTL--VNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEK 165 (784)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 165 (784)
.+...|...| .+....|.+.+..++..+ .|.+|...+..++......+++.+..+....-.+..+.
T Consensus 12 ~nL~~w~~fi------------~~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ 79 (145)
T PF13762_consen 12 ANLEVWKTFI------------NSHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDN 79 (145)
T ss_pred hhHHHHHHHH------------HHHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhccc
Confidence 3556666665 333344454444455433 38888888877777776666666644433222234677
Q ss_pred chHHHHHHHHhhCCC-CccHHHHHHHHhhcCCCCChHHHHHHHHHHhh
Q 003946 166 EPLIYLSLGLSKCGL-PVPASTILRKLVATEQYPPVTAWSAILAHMSL 212 (784)
Q Consensus 166 ~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 212 (784)
+.|..++...++..- ---+..+|.-|.+.+.++++.-|..+|.++.+
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 888899988876665 45667889999988889999999999988766
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.10 E-value=1e+02 Score=35.34 Aligned_cols=54 Identities=13% Similarity=0.229 Sum_probs=30.0
Q ss_pred HHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003946 259 ALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRH 313 (784)
Q Consensus 259 ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~ 313 (784)
+|.-|.......+-..+++.+.+.|+. +..--+.|+.+|.+.++.+...+..+.
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 445555555555555666666666643 333444566666666666655544443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.79 E-value=11 Score=30.14 Aligned_cols=53 Identities=6% Similarity=0.013 Sum_probs=44.3
Q ss_pred ChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 003946 268 TTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNL 320 (784)
Q Consensus 268 ~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 320 (784)
|.-++.+-++.+....+.|++.+..+.+.+|-|.+++..|.++|+.++.+...
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~ 74 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA 74 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC
Confidence 33466667777778888999999999999999999999999999998866443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.15 E-value=54 Score=31.56 Aligned_cols=25 Identities=8% Similarity=-0.000 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 291 LIIMAHIYERNGRREELRKLQRHID 315 (784)
Q Consensus 291 ~~~li~~~~~~g~~~~A~~l~~~~~ 315 (784)
|.....+|-...+++.|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3333444455555555555444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.07 E-value=65 Score=32.48 Aligned_cols=118 Identities=8% Similarity=-0.141 Sum_probs=67.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHH--HHHHHHHHcCChhH
Q 003946 501 LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDA--SCYE--ALLQSKIVQKDTPG 576 (784)
Q Consensus 501 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~--~li~~~~~~g~~~~ 576 (784)
.|+..+|-..++++.+. .+.|...++--=.+|.-.|+.+.-...++++.-. ..||. .+|- .+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 46666666666666654 3456666666667777777777777777766432 01222 2222 22223345666677
Q ss_pred HHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003946 577 ALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 577 A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 622 (784)
|.+.-++..+.+ +.+.-+-.++.....-.|+..++.++..+-..
T Consensus 194 AEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted 237 (491)
T KOG2610|consen 194 AEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTED 237 (491)
T ss_pred HHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhccc
Confidence 766666655544 45555555555555566666666665554443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=81.01 E-value=43 Score=30.38 Aligned_cols=136 Identities=13% Similarity=0.054 Sum_probs=90.0
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhh
Q 003946 186 TILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLL 265 (784)
Q Consensus 186 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 265 (784)
+.+..+.+.|+.|+...|..+|..+.+. |.+.....++. -++-||.......+-.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~--------~~~~~L~qllq--------------~~Vi~DSk~lA~~LLs~~- 71 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRN--------GQFSQLHQLLQ--------------YHVIPDSKPLACQLLSLG- 71 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHh--------------hcccCCcHHHHHHHHHhH-
Confidence 4555666778888888899999888886 55555555555 445566555554443332
Q ss_pred cCChhHHHHHHHhhhhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhH
Q 003946 266 FETTRKAEQLLDIMPRI-GVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNS 344 (784)
Q Consensus 266 ~g~~~~A~~l~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 344 (784)
+.+..+.++--+|.++ + ..+..+++.+...|++-+|.+........+... ...++.+-.+.+|...
T Consensus 72 -~~~~~~~Ql~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~-------~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 72 -NQYPPAYQLGLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVP-------ARKFLEAAANSNDDQL 138 (167)
T ss_pred -ccChHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCC-------HHHHHHHHHHcCCHHH
Confidence 3445566666666543 2 234566777888899999988877754332222 5667888888888888
Q ss_pred HHHHHHHHHHHHH
Q 003946 345 ASKMVLEMLQRAK 357 (784)
Q Consensus 345 A~~~~~~m~~~~~ 357 (784)
-..+|+-+.+++.
T Consensus 139 f~~V~~ff~~~n~ 151 (167)
T PF07035_consen 139 FYAVFRFFEERNL 151 (167)
T ss_pred HHHHHHHHHHhhH
Confidence 8888887777664
|
|
| >PF14669 Asp_Glu_race_2: Putative aspartate racemase | Back alignment and domain information |
|---|
Probab=80.99 E-value=45 Score=30.63 Aligned_cols=182 Identities=12% Similarity=0.159 Sum_probs=99.7
Q ss_pred cCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 517 AGVRASSSVYASLLKAYIEA----NRPREVTALLRDARSAGIQLDASC----YEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 517 ~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t----~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
.|..++...++-++..+.+. ++++-+..+-.+....++.++... ...=+..|-+.|||.+--.+|-...
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~--- 78 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK--- 78 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH---
Confidence 35566777777776666544 334444444444555555544332 2222334555555555433333222
Q ss_pred CCCCcHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003946 589 IPRSGHQEFEMLVKGCAQNHEAGL-----MAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP 663 (784)
Q Consensus 589 ~~~~~~~~~~~ll~~~~~~~~~~~-----a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 663 (784)
.+|.+.++++. |+.+.++-++ +|. +.|.....+-++.-+.+++-+.+-
T Consensus 79 -------------~gce~~~dlq~~~~~va~~Ltkd~Kd----k~~-vPFceFAetV~k~~q~~e~dK~~L--------- 131 (233)
T PF14669_consen 79 -------------MGCEKFADLQRFCACVAEALTKDSKD----KPG-VPFCEFAETVCKDPQNDEVDKTLL--------- 131 (233)
T ss_pred -------------hhcCCHHHHHHHHHHHHHHHHhcccc----cCC-CCHHHHHHHHhcCCccchhhhhhh---------
Confidence 22222222222 2222222222 222 246666666666555555433321
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC----------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003946 664 NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS----------TSMNFDEELLDSVLYTFVRGGFFARANEVVAM 730 (784)
Q Consensus 664 ~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~----------~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 730 (784)
..+=-+++..|.+.. +|.++.++++.|.+.... .+..+.-...|.....+.+.|.+|.|..++++
T Consensus 132 -GRiGiS~m~~Yhk~~-qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 132 -GRIGISLMYSYHKTL-QWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred -hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 122245677788888 899999999988764211 22344556778889999999999999999883
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=80.63 E-value=23 Score=35.06 Aligned_cols=125 Identities=13% Similarity=0.095 Sum_probs=92.1
Q ss_pred hccchhhHHHHHHHhcc-cCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCC
Q 003946 102 NEHRYGDAWKLYEQHMQ-MDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGL 180 (784)
Q Consensus 102 ~~~~~~~A~~l~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 180 (784)
++....+|+.+|+.... ..+.-|......+|+......+ .....-++++..+... .+..+++.+....+..+++.++
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~-~~l~alYEvV~~l~~t-~~~~l~~~vi~~Il~~L~~~~d 217 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDEN-TKLNALYEVVDFLVST-FSKSLTRNVIISILEILAESRD 217 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccc-cchhhHHHHHHHHHhc-cccCCChhHHHHHHHHHHhccc
Confidence 34556788888884333 2345667777788888876222 2555566666666655 5566888889999999999999
Q ss_pred CccHHHHHHHHhhc-CCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCc
Q 003946 181 PVPASTILRKLVAT-EQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRV 236 (784)
Q Consensus 181 ~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m 236 (784)
+..-.++++.-... +..-|...|...|...... |+..-...+.++|.+
T Consensus 218 W~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~s--------gD~~~~~kiI~~GhL 266 (292)
T PF13929_consen 218 WNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVES--------GDQEVMRKIIDDGHL 266 (292)
T ss_pred HHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHc--------CCHHHHHHHhhCCCe
Confidence 99999999987765 7788999999999998887 556666666666555
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.7 bits (185), Expect = 4e-14
Identities = 98/654 (14%), Positives = 202/654 (30%), Gaps = 178/654 (27%)
Query: 113 YEQHM-----QMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAF--EEGKQILLEK 165
+ HM + + K +++ +FV++ D K ++ + + EE I++ K
Sbjct: 3 HHHHMDFETGEHQ-YQYKDILSVFEDAFVDNFDCKDVQD---MPKSILSKEEIDHIIMSK 58
Query: 166 EPL--IYLSLG--LSKCGLPVPASTILRKLVATEQ--YPPVTAWSAILAHMSLTAPGAYL 219
+ + LSK + + + + Y + S I P + +
Sbjct: 59 DAVSGTLRLFWTLLSK-----QEEMVQKFVEEVLRINYKFL--MSPI--KTEQRQP-SMM 108
Query: 220 AAELILEIGYLFQDG---------RVDPRKKCNAPLIAMKPNTNTFNIALAG-------C 263
I + L+ D R+ P K L+ ++P N+ + G
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK---NVLIDGVLGSGKTW 165
Query: 264 LLFETTRKAEQLLDIMP------RIG-VKADSNLLIIMAHIYER-----NGRREELRKLQ 311
+ + + ++ M + + +L ++ + + R + ++
Sbjct: 166 VALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 312 RHIDEAVN-LSDIQFRQFY-NCLL-------SCHLK-FGDLN------SASKMVLEMLQR 355
I L + + Y NCLL + F +L+ + K V + L
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSA 283
Query: 356 AKEARNSLAAAMLPFNAVGVNNRTPSE------QNVNCTNSVDLEN----------SGII 399
A SL + TP E + ++C DL S I
Sbjct: 284 ATTTHISLDHHSMTL--------TPDEVKSLLLKYLDCRPQ-DLPREVLTTNPRRLSIIA 334
Query: 400 E------NHILSYEDFTKDRKFVALE--------AEVKRVLQTLLGMLQKQVELITTE-- 443
E +++ D+ +E AE +++ L + I T
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-LSVFPPSA-HIPTILL 392
Query: 444 -----HGILQPTEKIYIKLVKAFLEAGKTKELT------HFLIKAEKENLQVSHDDAALG 492
I + KL K L + KE T + +K + EN H + +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-RSIVD 451
Query: 493 HVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAY-IEANRPREVTALLRDARS 551
H D L Y+ + + ++ E L R
Sbjct: 452 H-----------YNIPKTFDSDDLIPPYLDQYFYSHI--GHHLKNIEHPERMTLFRM--- 495
Query: 552 AGIQLDASCYEALLQSKIVQKDTP-----GALHLFKEMK--ESKIPRSGHQEFEMLVKGC 604
+ LD L+ KI T L+ +++K + I + ++E LV
Sbjct: 496 --VFLDFR----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN-DPKYERLVN-- 546
Query: 605 AQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHF---FCKKRLMQDAEKALKR 655
+ L +++E + + +++ + + ++A K ++R
Sbjct: 547 -------AILDFLPKIEE----NLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 2e-08
Identities = 82/596 (13%), Positives = 165/596 (27%), Gaps = 179/596 (30%)
Query: 266 FETTRKAEQLLDIMP--RIGVKADSNLLIIMAHIYERNGRREELRKL--QRHIDEAVNLS 321
FET Q DI+ + ++ ++ + + + ID +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDN----------FDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 322 DIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPF--NAVGVNNRT 379
D L L + K V E+L+ N F + + R
Sbjct: 59 DAVSGTLR--LFWTLLSKQE-EMVQKFVEEVLRI-----N------YKFLMSPIKTEQRQ 104
Query: 380 PSEQNVNCTNSVD-LENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQ--------TLL 430
PS D L N N + + + ++ + ++ L ++ L +
Sbjct: 105 PSMMTRMYIEQRDRLYND----NQVFAKYNVSRLQPYLKL----RQALLELRPAKNVLID 156
Query: 431 GMLQ--KQVELI-------------------------TTEHGILQPTEKIYIKLVKAFLE 463
G+L K + + +L+ +K+ ++ +
Sbjct: 157 GVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 464 AG----KTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGV 519
K H I+AE L S + L + L ++ +
Sbjct: 216 RSDHSSNIKLRIHS-IQAELRRLLKSKP-----YENCLLV----LL---NVQNAKAWNAF 262
Query: 520 RASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALH 579
S + LL R ++VT L A + I LD + + L
Sbjct: 263 NLSCKI---LL-----TTRFKQVTDFLSAATTTHISLD------HHSMTLTPDEVKSLLL 308
Query: 580 LFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHF 639
+ + + +PR + ++A+ +++ G+ W+N H
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRL---------SIIAESIRD---------GLATWDNWKHV 350
Query: 640 FCKKRLMQDAEKALKRMRSLGHLPNA---QTFHSMVTGYAAIGGKYTEVTE-----LWGE 691
C K ++ SL L A + F + ++ + +W +
Sbjct: 351 NCDKL-----TTIIES--SLNVLEPAEYRKMFDRL-----SVFPPSAHIPTILLSLIWFD 398
Query: 692 MKSFASSTSMNFDEELLDSVL-------YTF-VRGGFFARANEVVAMMEEGKMFIDKYK- 742
+ S M +L L T + + ++ + +D Y
Sbjct: 399 VI---KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 743 ----------------YRTLFLKYHKTLYKGKTPKFQTEAQLKKREAALGFKKWLG 782
Y + +H L + E R L F ++L
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHH--LKNIE----HPERMTLFRMVFLDF-RFLE 504
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 4e-07
Identities = 62/380 (16%), Positives = 113/380 (29%), Gaps = 122/380 (32%)
Query: 11 SSSAILGLFNDSCQ-----------NAAWVSRHQIQSARSQWLGFEP-----ILVRCYLT 54
++ FN SC+ + + S + P +L++
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK---- 309
Query: 55 YLNMQTGVLPNLNEFTYPTHPFS-SMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLY 113
YL+ + LP T+P S+ ++ I + + + D WK
Sbjct: 310 YLDCRPQDLPRE---VLTTNPRRLSI-------------IAESIRDGLA--TW-DNWK-- 348
Query: 114 EQHMQMDGFPRKTLVNKILTSFVESLDSK--------------------------WLEKA 147
H+ D + I+ S + L+ W +
Sbjct: 349 --HVNCDK------LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 148 YGLVEQAFEE-GKQILLEKEP---LIYL-SLGLSKCGLPVPASTIL-RKLVATEQYPPVT 201
V + K L+EK+P I + S+ L + + L R +V + Y
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK-VKLENEYALHRSIV--DHYNIPK 457
Query: 202 AW---------------SAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNA-- 244
+ S I H+ E + +F D R +K +
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEH-----PERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 245 PLIAMKPNTNTFN--------IALAGCLLFETTRKAEQLLDIMPRIG---VKADSNLLII 293
A NT I +E R +LD +P+I + + L+
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDN-DPKYE--RLVNAILDFLPKIEENLICSKYTDLLR 569
Query: 294 MAHIYERNGRREE-LRKLQR 312
+A + E EE +++QR
Sbjct: 570 IALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 9e-05
Identities = 74/491 (15%), Positives = 141/491 (28%), Gaps = 128/491 (26%)
Query: 18 LFNDSCQNAAWVSRHQIQSARSQ---WLGFEPILVRCYLTYLNMQTGVLPNLNEFTYPTH 74
+ D C + +++Q WL + C N VL L + Y
Sbjct: 166 VALDVCLS------YKVQCKMDFKIFWLNLK----NC-----NSPETVLEMLQKLLYQID 210
Query: 75 PFSSMGGTILVQARDPAK-LSAEIENAINEHRYG-------DAWKLYEQHMQMDGFPRKT 126
P + + + AE+ + Y + + K
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--NAKAWNAFNLSCKI 268
Query: 127 LV---NKILTSFVESLDSKWL---EKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGL 180
L+ K +T F+ + + + + L +E K +LL+ L L
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTP---DEVKSLLLKY-------LDCRPQDL 318
Query: 181 PVPASTI-----------LRKLVAT-EQYPPVTAW--SAILAHMSLTA--PGAYLAAELI 224
P T +R +AT + + V + I+ SL P Y
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDR 377
Query: 225 LEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFE--TTRKAEQLLDIMPRI 282
L + F + P I + L++ +++ + +
Sbjct: 378 LSV---FPPS-------AHIPTILL-------------SLIWFDVIKSDVMVVVNKLHKY 414
Query: 283 G-VKADSNLLIIMAH-IY-ERNGRREELRKLQRHIDEAVN---------LSDIQFRQFYN 330
V+ I IY E + E L R I + N L Q++
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 331 CLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNS 390
+ HLK +E +R R L F + R N + S
Sbjct: 475 SHIGHHLK----------NIEHPERMTLFRMVF----LDFRFLEQKIRH-DSTAWNASGS 519
Query: 391 V-----DLEN--SGIIENH------ILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQV 437
+ L+ I +N + + DF + + ++ +L+ + ++ +
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR--IALMAEDE 577
Query: 438 ELITTEHGILQ 448
+ H +Q
Sbjct: 578 AIFEEAHKQVQ 588
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.1 bits (123), Expect = 7e-07
Identities = 27/261 (10%), Positives = 64/261 (24%), Gaps = 7/261 (2%)
Query: 509 DLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSK 568
L ++ + L+ + L R A LLQ
Sbjct: 43 RLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEA 102
Query: 569 IVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC 628
+ + ++++ Q K C + L LL ++
Sbjct: 103 PGKLSLDVEQAPSGQHSQAQLSGQ-QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK 161
Query: 629 G--VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVT 686
+ +N V+ + ++ ++ L ++ G P+ ++ + + +
Sbjct: 162 LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
Query: 687 ELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTL 746
+M F +L R ++V L
Sbjct: 222 RCLEQMSQEGLKLQALFT----AVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277
Query: 747 FLKYHKTLYKGKTPKFQTEAQ 767
+ + PK +
Sbjct: 278 LRDVYAKDGRVSYPKLHLPLK 298
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 784 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.75 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.71 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.68 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.67 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.66 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.66 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.66 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.62 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.6 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.57 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.55 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.49 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.48 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.46 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.46 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.44 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.44 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.43 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.42 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.41 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.39 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.38 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.38 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.38 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.38 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.37 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.37 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.37 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.37 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.36 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.36 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.36 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.35 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.34 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.33 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.27 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.25 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.24 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.23 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.23 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.22 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.21 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.21 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.19 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.16 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.14 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.14 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.13 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.12 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.1 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.07 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.06 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.04 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.01 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.98 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.95 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.94 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.93 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.93 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.91 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.88 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.78 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.78 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.78 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.68 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.64 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.62 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.61 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.61 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.61 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.58 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.58 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.56 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.55 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.55 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.54 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.54 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.53 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.52 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.5 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.47 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.47 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.47 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.45 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.45 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.45 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.43 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.41 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.41 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.38 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.36 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.36 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.35 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.3 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.29 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.26 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.26 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.23 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.21 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.21 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.2 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.17 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.14 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.1 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.1 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.09 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.07 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.07 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.07 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.06 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.05 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.03 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.03 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.03 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.02 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.01 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.01 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.01 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.01 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.0 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.99 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.95 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.92 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.92 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.92 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.88 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.86 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.85 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.85 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.84 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.84 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.84 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.83 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.82 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.8 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.8 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.78 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.76 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.75 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.73 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.69 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.69 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.68 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.67 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.65 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.64 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.64 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.61 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.6 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.58 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.57 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.48 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.43 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.43 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.42 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.37 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.32 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.28 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.25 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.23 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.19 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.16 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.13 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.12 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.08 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.01 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.99 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.97 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.94 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.88 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.84 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.83 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.81 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.72 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.71 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.65 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.58 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.57 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.52 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.5 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.41 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.38 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.23 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.22 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.9 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.7 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.56 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.54 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.53 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.39 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.27 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.63 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.54 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.51 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.29 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.21 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.07 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.42 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.48 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 92.31 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 92.08 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 91.56 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 90.29 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 89.63 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.29 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 87.27 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 87.01 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.62 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 85.48 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 85.18 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.51 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 84.5 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 82.91 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 81.73 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 81.27 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 81.23 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.23 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=351.47 Aligned_cols=499 Identities=10% Similarity=-0.014 Sum_probs=383.8
Q ss_pred CChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccch
Q 003946 88 RDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEP 167 (784)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 167 (784)
+++..|+.+++.|.+.|++++|+.+|++|.... |+..++..+...|.+.|+.+ +|...+.++... ..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~----~~~~~~ 152 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYA---RAKCLLTKEDLY----NRSSAC 152 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHH---HHHHHHHHTCGG----GTCHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHH---HHHHHHHHHhcc----ccchhH
Confidence 455667777777777777777777777766432 55566666666666654433 345555544222 235556
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccccccc
Q 003946 168 LIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLI 247 (784)
Q Consensus 168 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~ 247 (784)
++.++.+|.+.|++++|.++|+++.. +.. . ..++.+. . ... .
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~---~-~~~~~~~------------------~--~~~---------~ 194 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNP-----FRK---D-EKNANKL------------------L--MQD---------G 194 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCT-----TC----------------------------------CCC---------S
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCC-----ccc---c-ccccccc------------------c--ccc---------c
Confidence 66666666666666666666664221 110 0 0000000 0 111 3
Q ss_pred CCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHH--HH-HHHHHhhcCCChh
Q 003946 248 AMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKAD-SNLLIIMAHIYERNGRREELR--KL-QRHIDEAVNLSDI 323 (784)
Q Consensus 248 ~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~--~l-~~~~~~~~~~~~~ 323 (784)
+.+++..+|+.++.+|.+.|++++|+++|++|.+.+ |+ ...+..+...+...+..+.+. .+ +..+...+....
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 271 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL- 271 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH-
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH-
Confidence 456789999999999999999999999999999864 44 455555555444333322221 11 344433222222
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccc
Q 003946 324 QFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHI 403 (784)
Q Consensus 324 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (784)
..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 272 --~~~~~~~~~~~~~~g~~~~A~~~~~~~~~------------------------------------------------- 300 (597)
T 2xpi_A 272 --RSLYMLKLNKTSHEDELRRAEDYLSSING------------------------------------------------- 300 (597)
T ss_dssp --HHHHHTTSCTTTTHHHHHHHHHHHHTSTT-------------------------------------------------
T ss_pred --HHHHHHHHHHHcCcchHHHHHHHHHHhhc-------------------------------------------------
Confidence 22688889999999999999999987765
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003946 404 LSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQ 483 (784)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 483 (784)
..++..+|+.++.+|.+.|++++|.++|+++.+.+
T Consensus 301 -------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 335 (597)
T 2xpi_A 301 -------------------------------------------LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-- 335 (597)
T ss_dssp -------------------------------------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred -------------------------------------------CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--
Confidence 24678899999999999999999999999999877
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 484 VSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEA 563 (784)
Q Consensus 484 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 563 (784)
+.+..++..++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. ..+..+|+.
T Consensus 336 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 412 (597)
T 2xpi_A 336 -PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIG 412 (597)
T ss_dssp -TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 5577789999999999999999999999999764 4579999999999999999999999999998764 346889999
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 003946 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK 643 (784)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~ 643 (784)
++.+|.+.|++++|+++|+++.+.+ |++..+|..++.+|.+.|++++|.++|+.+.+..+ .+..+|+.++..|.+.
T Consensus 413 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 413 FAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ--YDPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHh
Confidence 9999999999999999999999865 66788999999999999999999999999998653 3678899999999999
Q ss_pred CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHh
Q 003946 644 RLMQDAEKALKRMRSL----GHLPN--AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVR 717 (784)
Q Consensus 644 g~~~~A~~~~~~m~~~----g~~p~--~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~ 717 (784)
|++++|.++|+++.+. +..|+ ..+|..+..+|.+.| ++++|...++++.+.. +.+..+|..+..+|.+
T Consensus 489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK-MYDAAIDALNQGLLLS-----TNDANVHTAIALVYLH 562 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS-----SCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHH
Confidence 9999999999999886 67888 789999999999999 9999999999998731 3478999999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 718 GGFFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 718 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
.|++++|.+.++++.+. .|+......++
T Consensus 563 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~l 590 (597)
T 2xpi_A 563 KKIPGLAITHLHESLAI--SPNEIMASDLL 590 (597)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 99999999999999984 56655444444
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=350.20 Aligned_cols=473 Identities=9% Similarity=-0.019 Sum_probs=379.9
Q ss_pred CCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccc
Q 003946 87 ARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKE 166 (784)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 166 (784)
.|+..+++.++.+|...|++++|+.+|+++... .++..+++.+...+.+.|+.+ +|..+++++. +...
T Consensus 114 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-------~~~~ 181 (597)
T 2xpi_A 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQ---GALNLLGETN-------PFRK 181 (597)
T ss_dssp HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHH---HHHHHHCSSC-------TTC-
T ss_pred CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHH---HHHHHHhccC-------Cccc
Confidence 457789999999999999999999999998764 478889999999999876554 5666666421 1110
Q ss_pred hHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccc
Q 003946 167 PLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPL 246 (784)
Q Consensus 167 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~ 246 (784)
....+.+.+. ...|..++..+|+.++.+|.+. |++++|.++|+ ++..
T Consensus 182 ----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~--~~~~-------- 228 (597)
T 2xpi_A 182 ----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNL--------SNFDRAKECYK--EALM-------- 228 (597)
T ss_dssp -------------C-----------CCSSCCHHHHHHHHHHHHHHHT--------TCHHHHHHHHH--HHHH--------
T ss_pred ----cccccccccc-----------cccccchhHHHHHHHHHHHHHc--------CCHHHHHHHHH--HHHH--------
Confidence 0111111111 2335667899999999999997 89999999999 8742
Q ss_pred cCCCCc-hhhHHHHHHHhhhcCChhHHH--HH-HHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCh
Q 003946 247 IAMKPN-TNTFNIALAGCLLFETTRKAE--QL-LDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSD 322 (784)
Q Consensus 247 ~~~~p~-~~~~~~ll~~~~~~g~~~~A~--~l-~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~ 322 (784)
..|+ ...|..+...+...+..+.+. .+ +..+...+..++..+|+.++..|.+.|++++|.++|+++.+. +++.
T Consensus 229 --~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~ 305 (597)
T 2xpi_A 229 --VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSS 305 (597)
T ss_dssp --HCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCH
T ss_pred --hCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchH
Confidence 3444 445555555554443333222 12 555555555566677888899999999999999999998875 2333
Q ss_pred hhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccccc
Q 003946 323 IQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENH 402 (784)
Q Consensus 323 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (784)
. +|+.++.+|.+.|++++|.++|+++.+.+
T Consensus 306 ~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------------------------------- 335 (597)
T 2xpi_A 306 D----LLLCKADTLFVRSRFIDVLAITTKILEID---------------------------------------------- 335 (597)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------------------
T ss_pred H----HHHHHHHHHHHhcCHHHHHHHHHHHHHcC----------------------------------------------
Confidence 3 69999999999999999999999998742
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 003946 403 ILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENL 482 (784)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 482 (784)
+.+..+|+.++.+|.+.|++++|..+|+++.+..
T Consensus 336 ---------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 336 ---------------------------------------------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp ---------------------------------------------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred ---------------------------------------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 2255678999999999999999999999999765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 483 QVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYE 562 (784)
Q Consensus 483 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 562 (784)
+.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ ..+..+|+
T Consensus 370 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 445 (597)
T 2xpi_A 370 --PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYL 445 (597)
T ss_dssp --TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHH
T ss_pred --cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 6788899999999999999999999999999864 3468899999999999999999999999998775 35889999
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC---CCCCC--HHHHHHHH
Q 003946 563 ALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ---RIDCG--VHDWNNVI 637 (784)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~y~~li 637 (784)
.++.+|.+.|++++|+++|+++.+.. |.+..+|..++..|.+.|++++|.++|+.+.+.. +..|+ ..+|+.++
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 99999999999999999999999865 6778999999999999999999999999987752 24576 78999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHH
Q 003946 638 HFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFV 716 (784)
Q Consensus 638 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~ 716 (784)
.+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|...| ++++|...++++.+.. +-+...|..+..+|.
T Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~-----p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 524 HAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKK-IPGLAITHLHESLAIS-----PNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-----TTCHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcC-----CCChHHHHHHHHHHh
Confidence 99999999999999999999864 347899999999999999 9999999999998832 225667777766553
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=272.29 Aligned_cols=205 Identities=16% Similarity=0.188 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------
Q 003946 469 ELTHFLIKAEKENLQVSHD-DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANR--------- 538 (784)
Q Consensus 469 ~a~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--------- 538 (784)
.+..+.+++.+.+ +.+. ..+++.+|++|++.|++++|.++|++|.+.|++||..+||+||.+|++.+.
T Consensus 8 ~~e~L~~~~~~k~--~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 8 PSENLSRKAKKKA--IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred hHHHHHHHHHHhc--ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 3445556666555 2322 335777788888888888888888888888888888888888888876654
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003946 539 PREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQ 618 (784)
Q Consensus 539 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 618 (784)
+++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~---------------------------- 137 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ---------------------------- 137 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC----------------------------
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------------------
Confidence 5678888888888888888888888888888888888888888888777653
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC
Q 003946 619 EVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS 698 (784)
Q Consensus 619 ~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~ 698 (784)
||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.| ++++|.+++++|++
T Consensus 138 ---------Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g-~~d~A~~ll~~Mr~---- 203 (501)
T 4g26_A 138 ---------PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTK-NADKVYKTLQRLRD---- 203 (501)
T ss_dssp ---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH----
T ss_pred ---------CccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCC-CHHHHHHHHHHHHH----
Confidence 4455555555555555555555555555555555555555555555555555 55555555555555
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 003946 699 TSMNFDEELLDSVLYTFVR 717 (784)
Q Consensus 699 ~~~~p~~~~~~~li~~~~~ 717 (784)
.+..|+..||+.++..|+.
T Consensus 204 ~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 204 LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTSSBCHHHHHHHHHHHHS
T ss_pred hCCCcCHHHHHHHHHHHhc
Confidence 4555555555555555543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-29 Score=272.05 Aligned_cols=188 Identities=14% Similarity=0.192 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHcCCCCC
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW---------LDQAHDLLDEMHLAGVRAS 522 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~g~~~~ 522 (784)
..++.+|++|++.|++++|.++|++|.+.| +.||..|||+||.+|++.+. +++|.++|++|.+.|+.||
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~G--v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNG--VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 568899999999999999999999999999 89999999999999997664 7899999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVK 602 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~ 602 (784)
..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~------------- 171 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV------------- 171 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999998885
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003946 603 GCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAI 678 (784)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 678 (784)
.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 172 ------------------------~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 172 ------------------------VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp ------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred ------------------------CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 3677888888888888888888888888888888888888888888887653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-23 Score=221.32 Aligned_cols=365 Identities=13% Similarity=0.017 Sum_probs=317.1
Q ss_pred HHHhhhcCChhHHHHHHHhhhhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHh
Q 003946 260 LAGCLLFETTRKAEQLLDIMPRIGVKAD-SNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLK 338 (784)
Q Consensus 260 l~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~ 338 (784)
...+.+.|++++|++.++.+.+.. |+ ...+..+...+.+.|++++|...++...+..+.... +|..+...|.+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~----~~~~lg~~~~~ 79 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE----AYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH----HHHHHHHHHHH
Confidence 345678999999999999988753 54 456677778899999999999999998887655544 69999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHH
Q 003946 339 FGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVAL 418 (784)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (784)
.|++++|.+.|+++...
T Consensus 80 ~g~~~~A~~~~~~al~~--------------------------------------------------------------- 96 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRL--------------------------------------------------------------- 96 (388)
T ss_dssp HTCHHHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHc---------------------------------------------------------------
Confidence 99999999999998872
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 003946 419 EAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITL 497 (784)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~ 497 (784)
.| +..+|..+..++.+.|++++|...|.++.+.. +.+...+..+...
T Consensus 97 -----------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 97 -----------------------------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN---PDLYCVRSDLGNL 144 (388)
T ss_dssp -----------------------------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC---TTCTHHHHHHHHH
T ss_pred -----------------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHH
Confidence 34 45689999999999999999999999999876 4455667788888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 003946 498 CISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGA 577 (784)
Q Consensus 498 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 577 (784)
+...|++++|.+.|+++.+.. +.+..+|..+...|.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999874 3368899999999999999999999999998874 23577899999999999999999
Q ss_pred HHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 578 LHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 578 ~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 657 (784)
+..+++..... |.+..++..+...+.+.|++++|.+.|+.+.+..+. +..+|..+...|.+.|++++|.+.|+++.
T Consensus 223 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 223 VAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH--FPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS--CHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998765 778899999999999999999999999999986532 46679999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003946 658 SLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMF 737 (784)
Q Consensus 658 ~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 737 (784)
+. .+.+..+|..+...+...| ++++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++.+. .
T Consensus 299 ~~-~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~ 369 (388)
T 1w3b_A 299 RL-CPTHADSLNNLANIKREQG-NIEEAVRLYRKALEV-----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--S 369 (388)
T ss_dssp HH-CTTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHTTS-----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--C
T ss_pred hh-CcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--C
Confidence 86 3457889999999999999 999999999999862 2346889999999999999999999999999974 5
Q ss_pred CCH
Q 003946 738 IDK 740 (784)
Q Consensus 738 pd~ 740 (784)
|+.
T Consensus 370 p~~ 372 (388)
T 1w3b_A 370 PTF 372 (388)
T ss_dssp TTC
T ss_pred CCC
Confidence 653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-23 Score=220.42 Aligned_cols=375 Identities=12% Similarity=0.021 Sum_probs=320.9
Q ss_pred HHHHHHhhhhhccCCcCccccccccccCCCCc-hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHH
Q 003946 221 AELILEIGYLFQDGRVDPRKKCNAPLIAMKPN-TNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYE 299 (784)
Q Consensus 221 ~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~ 299 (784)
.|++++|...+. ++. ...|+ ...+..+...+.+.|++++|...++...+.. +.+..+|..+...|.
T Consensus 12 ~g~~~~A~~~~~--~~~----------~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~ 78 (388)
T 1w3b_A 12 AGDFEAAERHCM--QLW----------RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK 78 (388)
T ss_dssp HTCHHHHHHHHH--HHH----------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH--HHH----------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH
Confidence 388999999988 652 23454 4456666677789999999999999988754 456789999999999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCC
Q 003946 300 RNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRT 379 (784)
Q Consensus 300 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (784)
+.|++++|.+.|+.+.+..+.... .|..+..+|.+.|++++|.+.|+++.+.
T Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------------ 130 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKPDFID----GYINLAAALVAAGDMEGAVQAYVSALQY------------------------ 130 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHSCSSHHHHHHHHHHHH------------------------
T ss_pred HCCCHHHHHHHHHHHHHcCcchHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------
Confidence 999999999999999886554444 5999999999999999999999988873
Q ss_pred CCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHH
Q 003946 380 PSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLV 458 (784)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li 458 (784)
.| +...+..+.
T Consensus 131 --------------------------------------------------------------------~p~~~~~~~~l~ 142 (388)
T 1w3b_A 131 --------------------------------------------------------------------NPDLYCVRSDLG 142 (388)
T ss_dssp --------------------------------------------------------------------CTTCTHHHHHHH
T ss_pred --------------------------------------------------------------------CCCcHHHHHHHH
Confidence 33 345777888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 459 KAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANR 538 (784)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 538 (784)
..+...|++++|.+.|.++.+.. +.+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|+
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~ 218 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARI 218 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence 88999999999999999999876 5678889999999999999999999999999875 3468889999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003946 539 PREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQ 618 (784)
Q Consensus 539 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 618 (784)
+++|...|++..+.. +.+..++..+...|...|++++|++.|+++.+.. |.+..++..+...+.+.|++++|.+.|+
T Consensus 219 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 219 FDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998763 2367899999999999999999999999999865 7778899999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC
Q 003946 619 EVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS 698 (784)
Q Consensus 619 ~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~ 698 (784)
.+.+..+ ++..+|+.+...|.+.|++++|.+.++++.+. .+.+..++..+...+.+.| ++++|...++++.+.
T Consensus 296 ~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~--- 368 (388)
T 1w3b_A 296 TALRLCP--THADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQG-KLQEALMHYKEAIRI--- 368 (388)
T ss_dssp HHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTT-CCHHHHHHHHHHHTT---
T ss_pred HHHhhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh---
Confidence 9998753 46788999999999999999999999999875 2335788999999999999 999999999999872
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 003946 699 TSMNFDEELLDSVLYTFVRGGF 720 (784)
Q Consensus 699 ~~~~p~~~~~~~li~~~~~~g~ 720 (784)
-+.+...|..+...+...|+
T Consensus 369 --~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 369 --SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp --CTTCHHHHHHHHHHHHHTCC
T ss_pred --CCCCHHHHHhHHHHHHHccC
Confidence 12256778888887776653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-20 Score=201.86 Aligned_cols=317 Identities=14% Similarity=0.118 Sum_probs=242.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 003946 286 ADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAA 365 (784)
Q Consensus 286 pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 365 (784)
.+...+..+...|.+.|++++|..+|+.+.+..+.+.. +|..+..+|.+.|++++|...|+++.+.+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------- 90 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI----AYYRRATVFLAMGKSKAALPDLTKVIQLK--------- 90 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------
Confidence 34566777777788888888888888887765444433 57778888888888888888887777632
Q ss_pred hchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcC
Q 003946 366 AMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHG 445 (784)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (784)
T Consensus 91 -------------------------------------------------------------------------------- 90 (450)
T 2y4t_A 91 -------------------------------------------------------------------------------- 90 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCH---HHHHHHH------------HHHHHcCCHHHHHHH
Q 003946 446 ILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDD---AALGHVI------------TLCISLGWLDQAHDL 510 (784)
Q Consensus 446 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~---~~~~~li------------~~~~~~g~~~~a~~~ 510 (784)
+.+...|..+..+|.+.|++++|...|+++.+.. +.+. ..+..+. ..+.+.|++++|...
T Consensus 91 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 91 --MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN---PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2245677777888888888888888888877654 3333 4444443 347788889999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCC
Q 003946 511 LDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIP 590 (784)
Q Consensus 511 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 590 (784)
|+.+.+.. +.+..++..+..+|.+.|++++|..+|+++.+.. ..+..+|..+...|...|++++|+..|+++....
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 241 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-- 241 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 88888764 3477888888888999999999999998887653 3467888888888888999999999998888654
Q ss_pred CCcHHHHHHH------------HHHHHhcCcHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003946 591 RSGHQEFEML------------VKGCAQNHEAGLMAKLLQEVKEGQRIDCG--VHDWNNVIHFFCKKRLMQDAEKALKRM 656 (784)
Q Consensus 591 ~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m 656 (784)
|.+...+..+ ...|.+.|++++|...|+.+.+..+..|. ..+|..+...|.+.|++++|++.++++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666555 78899999999999999999885532222 457899999999999999999999998
Q ss_pred HhCCCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHH
Q 003946 657 RSLGHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DEELLDSVLY 713 (784)
Q Consensus 657 ~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~ 713 (784)
.+. .| +..+|..+..+|...| ++++|...++++.+ +.| +...+..+..
T Consensus 322 ~~~--~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~------~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 322 LQM--EPDNVNALKDRAEAYLIEE-MYDEAIQDYETAQE------HNENDQQIREGLEK 371 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT------TSSSCHHHHHHHHH
T ss_pred HHh--CcccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH------hCcchHHHHHHHHH
Confidence 875 35 6889999999999999 99999999999987 233 4566666663
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-19 Score=201.53 Aligned_cols=431 Identities=11% Similarity=-0.024 Sum_probs=320.3
Q ss_pred hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHH
Q 003946 253 TNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCL 332 (784)
Q Consensus 253 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~l 332 (784)
...|...-..+.+.|++++|+..|+++.+.. ||..++..+..+|.+.|++++|...++.+.+..+.+.. +|..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l 79 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSK----VLLRR 79 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHH----HHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHH----HHHHH
Confidence 3456677788899999999999999999865 89999999999999999999999999999987655544 69999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhh
Q 003946 333 LSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKD 412 (784)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (784)
..+|.+.|++++|...|+++...+.. ........+ ....
T Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~~~~~-------------------------------------~~~~~~~~~--~~~~-- 118 (514)
T 2gw1_A 80 ASANEGLGKFADAMFDLSVLSLNGDF-------------------------------------NDASIEPML--ERNL-- 118 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSC-------------------------------------CGGGTHHHH--HHHH--
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCC-------------------------------------ccchHHHHH--HHHH--
Confidence 99999999999999999998874310 000000000 0000
Q ss_pred hhhHHHHHHHHHHHHHHh----------h-----------------hHHHHHHHHhhhc---CCcCC-CHHHHHHHHHHH
Q 003946 413 RKFVALEAEVKRVLQTLL----------G-----------------MLQKQVELITTEH---GILQP-TEKIYIKLVKAF 461 (784)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~----------~-----------------~~~~~~~~~~~~~---~~~~p-~~~~~~~li~~~ 461 (784)
...........+..+. . ......+...... ....| +...+......+
T Consensus 119 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (514)
T 2gw1_A 119 --NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSN 196 (514)
T ss_dssp --HHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 0000000000000000 0 0000000000000 00012 244444444444
Q ss_pred HH---cCChHHHHHHHHHHHH-----c--CCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 462 LE---AGKTKELTHFLIKAEK-----E--NLQV----SHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 462 ~~---~g~~~~a~~~~~~m~~-----~--~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
.. .|++++|...|+++.+ . .+.. +.+..++..+...+...|++++|...|+.+.+.. |+..++.
T Consensus 197 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~ 274 (514)
T 2gw1_A 197 LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYI 274 (514)
T ss_dssp HSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHH
Confidence 44 8999999999999987 3 1000 2234577888899999999999999999999875 3488899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
.+...|...|++++|...++++.+.. ..+...|..+...+...|++++|+..+++..+.. |.+...+..+...+...
T Consensus 275 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 275 YMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD--PENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHc
Confidence 99999999999999999999998764 3467789999999999999999999999998865 66677999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHH---cC
Q 003946 608 HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGH-LPN----AQTFHSMVTGYAA---IG 679 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~a~~~---~g 679 (784)
|++++|...++.+.+..+. +...|..+...|.+.|++++|...++++.+..- .|+ ...|..+...+.. .|
T Consensus 352 ~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKFPE--APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TCHHHHHHHHHHHHHHSTT--CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred CCHHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999999886532 456799999999999999999999999886421 111 3488888999999 89
Q ss_pred CCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 680 GKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLF 747 (784)
Q Consensus 680 ~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li 747 (784)
++++|...++++.+.. +.+...+..+...|.+.|++++|.+.+++..+. .|+.......+
T Consensus 430 -~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~ 489 (514)
T 2gw1_A 430 -NFIEATNLLEKASKLD-----PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEKLQAI 489 (514)
T ss_dssp -HHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHHHHHH
Confidence 9999999999998732 236788999999999999999999999999984 56655444433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-19 Score=195.96 Aligned_cols=331 Identities=11% Similarity=0.020 Sum_probs=265.7
Q ss_pred CCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHH
Q 003946 250 KPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFY 329 (784)
Q Consensus 250 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~ 329 (784)
+.+...|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..+|.+.|++++|...|+.+.+..+.... +|
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~ 97 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA----AR 97 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH----HH
Confidence 4567789999999999999999999999998763 446788999999999999999999999999987655544 69
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhh
Q 003946 330 NCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDF 409 (784)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (784)
..+..+|.+.|++++|.+.|+++.+.+. ..
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------------------------------~~------------ 127 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSNP--------------------------------------SE------------ 127 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSCC--------------------------------------CH------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC--------------------------------------CC------------
Confidence 9999999999999999999999876321 00
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHH
Q 003946 410 TKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDA 489 (784)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~ 489 (784)
.........+. ..+ ....+..+...+.+.|++++|...|+++.+.. +.+..
T Consensus 128 ----------~~~~~~~~~l~-~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~ 178 (450)
T 2y4t_A 128 ----------NEEKEAQSQLI-KSD---------------EMQRLRSQALNAFGSGDYTAAIAFLDKILEVC---VWDAE 178 (450)
T ss_dssp ----------HHHHHHHHHHH-HHH---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHH
T ss_pred ----------hhhHHHHHHHH-HHH---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChH
Confidence 00000000000 000 00123344566899999999999999999876 67888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-----
Q 003946 490 ALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEAL----- 564 (784)
Q Consensus 490 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----- 564 (784)
++..+..+|.+.|++++|..+|+.+.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 89999999999999999999999998764 3478999999999999999999999999998763 2244445544
Q ss_pred -------HHHHHHcCChhHHHHHHHHhHhcCCCCCc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHH
Q 003946 565 -------LQSKIVQKDTPGALHLFKEMKESKIPRSG----HQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDW 633 (784)
Q Consensus 565 -------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y 633 (784)
...|...|++++|+..|+++.+.. |.+ ...+..+...+.+.|++++|...++.+.+..+ .+...|
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~ 332 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP--DNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHH
Confidence 788999999999999999998864 444 34788899999999999999999999887542 357889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 003946 634 NNVIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMV 672 (784)
Q Consensus 634 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll 672 (784)
..+..+|...|++++|.+.+++..+ +.|+ ...+..+.
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 9999999999999999999999998 4575 55555554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-19 Score=196.81 Aligned_cols=443 Identities=12% Similarity=0.046 Sum_probs=261.3
Q ss_pred hHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHH
Q 003946 90 PAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLI 169 (784)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 169 (784)
...|......+...|++++|+..|+++.+.. |+...+..+...+.+.|+ .++|...+.++... . +.++..+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~-~--p~~~~~~~ 77 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGD---LKKVVEMSTKALEL-K--PDYSKVLL 77 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH-C--SCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhh---HHHHHHHHHHHhcc-C--hHHHHHHH
Confidence 4567778889999999999999999999876 788888888888887655 55677788887776 2 23556788
Q ss_pred HHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCC
Q 003946 170 YLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAM 249 (784)
Q Consensus 170 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~ 249 (784)
.+..+|.+.|++++|...|+++.+.+. ++......++..+... .....+.+.+. .+.. .+.
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~l~--~~~~--------~~~ 138 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNK--------QAMSKLKEKFG--DIDT--------ATA 138 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHH--------HHHHHHTTC-------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHH--------HHHHHHHHHHH--HHHH--------HHH
Confidence 899999999999999999999998753 3445555555544442 34444444443 3322 111
Q ss_pred CCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCC--------C-ChhHHHHHHHHHHh---cCCHHHHHHHHHHHHh-
Q 003946 250 KPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVK--------A-DSNLLIIMAHIYER---NGRREELRKLQRHIDE- 316 (784)
Q Consensus 250 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~--------p-d~~~~~~li~~~~~---~g~~~~A~~l~~~~~~- 316 (784)
.|+...++.-...............+...+...... | +...+......+.. .|++++|...|+.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 218 (514)
T 2gw1_A 139 TPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL 218 (514)
T ss_dssp ------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred hhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence 222222222111111111111111111111111111 2 23333334343443 6788888888877766
Q ss_pred ----h--cCCCh---hhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccC
Q 003946 317 ----A--VNLSD---IQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNC 387 (784)
Q Consensus 317 ----~--~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (784)
. .+... .....+|..+...|.+.|++++|...|++..+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------------------------------- 266 (514)
T 2gw1_A 219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-------------------------------- 266 (514)
T ss_dssp HHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------------------------------
T ss_pred hhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------------------------------
Confidence 2 11110 111225777777777777777777777776652
Q ss_pred CCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCCh
Q 003946 388 TNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKT 467 (784)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 467 (784)
.|+...|..+...+...|++
T Consensus 267 ------------------------------------------------------------~~~~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 267 ------------------------------------------------------------FPRVNSYIYMALIMADRNDS 286 (514)
T ss_dssp ------------------------------------------------------------CCCHHHHHHHHHHHHTSSCC
T ss_pred ------------------------------------------------------------CccHHHHHHHHHHHHHCCCH
Confidence 22256677777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003946 468 KELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLR 547 (784)
Q Consensus 468 ~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 547 (784)
++|...++++.... +.+..++..+...+...|++++|...|+...+... .+..++..+...|...|++++|...++
T Consensus 287 ~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 287 TEYYNYFDKALKLD---SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp TTGGGHHHHHHTTC---TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC---cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777654 44555677777777777777777777777776542 245666777777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCc----HHHHHHHHHHHHh---cCcHHHHHHHHHHH
Q 003946 548 DARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSG----HQEFEMLVKGCAQ---NHEAGLMAKLLQEV 620 (784)
Q Consensus 548 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~ 620 (784)
++.+.. ..+...|..+...+...|++++|+..++++.+.....+. ...+..+...+.. .|++++|...|+..
T Consensus 363 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 363 EAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 776543 224556666667777777777777777666553211110 1245555555555 55555555555555
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 621 KEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 621 ~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
....+ .+..+|..+...|.+.|++++|.+.|++..+
T Consensus 442 ~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 442 SKLDP--RSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 54332 1334455555555555555555555555554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-17 Score=182.73 Aligned_cols=414 Identities=12% Similarity=-0.011 Sum_probs=301.3
Q ss_pred hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHH
Q 003946 253 TNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCL 332 (784)
Q Consensus 253 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~l 332 (784)
...|...-..+.+.|++++|+..|+.+.+.. +.+..++..+..+|.+.|++++|.+.|+.+.+.++.+.. +|..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l 99 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSK----ALLRR 99 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHH----HHHHH
Confidence 4577888889999999999999999999865 346788999999999999999999999999987655544 59999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhh
Q 003946 333 LSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKD 412 (784)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (784)
..+|.+.|++++|...|+.+..... . .... +.. ..
T Consensus 100 a~~~~~~g~~~~A~~~~~~~~~~~~-~------------------------------------~~~~---~~~---~~-- 134 (537)
T 3fp2_A 100 ASANESLGNFTDAMFDLSVLSLNGD-F------------------------------------DGAS---IEP---ML-- 134 (537)
T ss_dssp HHHHHHHTCHHHHHHHHHHHC---------------------------------------------------C---HH--
T ss_pred HHHHHHcCCHHHHHHHHHHHhcCCC-C------------------------------------ChHH---HHH---HH--
Confidence 9999999999999999964422110 0 0000 000 00
Q ss_pred hhhHHHHHHHHHHHHHHhhhHH----------------H----HHHHHhhhc--CCcCCCHH-HHHHHHHHHH-------
Q 003946 413 RKFVALEAEVKRVLQTLLGMLQ----------------K----QVELITTEH--GILQPTEK-IYIKLVKAFL------- 462 (784)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~----------------~----~~~~~~~~~--~~~~p~~~-~~~~li~~~~------- 462 (784)
.......+...+........ . ......... ....+... .+..+...+.
T Consensus 135 --~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (537)
T 3fp2_A 135 --ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212 (537)
T ss_dssp --HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhH
Confidence 00000111111111111000 0 000000000 00111111 2222222221
Q ss_pred -HcCChHHHHHHHHHHHHcCCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003946 463 -EAGKTKELTHFLIKAEKENLQVSHDD-------AALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYI 534 (784)
Q Consensus 463 -~~g~~~~a~~~~~~m~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 534 (784)
..|++++|..+|+++.+.. +.+. .++..+...+...|++++|...|+...+.. |+..++..+...|.
T Consensus 213 ~a~~~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 213 VANDLLTKSTDMYHSLLSAN---TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHC---CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHH
Confidence 2257899999999998765 3332 346667778888999999999999999874 66889999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHH
Q 003946 535 EANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMA 614 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 614 (784)
..|++++|...|+++.+.. ..+..+|..+...+...|++++|+..+++..+.. |.+...+..+...+...|++++|.
T Consensus 288 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998764 3468889999999999999999999999999865 666789999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHc----------C
Q 003946 615 KLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLG-----HLPNAQTFHSMVTGYAAI----------G 679 (784)
Q Consensus 615 ~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~a~~~~----------g 679 (784)
+.++.+.+..+ .+...|..+...|...|++++|.+.+++..+.. .......+......+... |
T Consensus 365 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 365 AFFNETKLKFP--TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 99999988754 246679999999999999999999999987642 111223344455667777 8
Q ss_pred CCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003946 680 GKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEG 734 (784)
Q Consensus 680 ~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 734 (784)
++++|...+++..+. -+.+...+..+...|.+.|++++|.+.+++..+.
T Consensus 443 -~~~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 443 -KFNAAIKLLTKACEL-----DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp -HHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999873 2236788999999999999999999999999974
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.6e-17 Score=179.62 Aligned_cols=442 Identities=14% Similarity=0.079 Sum_probs=303.4
Q ss_pred ChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchH
Q 003946 89 DPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPL 168 (784)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 168 (784)
.+..|..+...+.+.|++++|+..|+++.+..+ .+...+..+...+.+.| +.++|...+.++... .+ .++..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~-~p--~~~~~~ 96 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTG---DLEKVIEFTTKALEI-KP--DHSKAL 96 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHH-CT--TCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcC---CHHHHHHHHHHHHhc-CC--chHHHH
Confidence 356788889999999999999999999998652 24456667777777654 456688888888776 22 356677
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccC
Q 003946 169 IYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIA 248 (784)
Q Consensus 169 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~ 248 (784)
..+...|...|++++|...|+.+. . .|+.. +..+..+.. .+...+|...++ ++....... ...
T Consensus 97 ~~la~~~~~~g~~~~A~~~~~~~~-~--~~~~~--~~~~~~~~~--------~~~~~~a~~~~~--~~l~~~~~~--~~~ 159 (537)
T 3fp2_A 97 LRRASANESLGNFTDAMFDLSVLS-L--NGDFD--GASIEPMLE--------RNLNKQAMKVLN--ENLSKDEGR--GSQ 159 (537)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHC----------------CHHH--------HHHHHHHHHHHH--HHCC---------C
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh-c--CCCCC--hHHHHHHHH--------HHHHHHHHHHHH--HHHHhCccc--ccc
Confidence 788999999999999999997443 2 22222 222222222 266667777776 442200000 011
Q ss_pred CCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChh-HHHHHHHHHHh--------cCCHHHHHHHHHHHHhhcC
Q 003946 249 MKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSN-LLIIMAHIYER--------NGRREELRKLQRHIDEAVN 319 (784)
Q Consensus 249 ~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-~~~~li~~~~~--------~g~~~~A~~l~~~~~~~~~ 319 (784)
..|+ +..+..+....+.+.+...+...... .+... ....+...+.. .|++++|..+++.+.+..+
T Consensus 160 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p 233 (537)
T 3fp2_A 160 VLPS----NTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT 233 (537)
T ss_dssp CCCC----HHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred ccch----HhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC
Confidence 2333 33444555667777777666555432 22222 33333333322 2478899999999888654
Q ss_pred CChhh---HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccc
Q 003946 320 LSDIQ---FRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENS 396 (784)
Q Consensus 320 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (784)
.+... ...+|..+...+...|++++|...|++...
T Consensus 234 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~------------------------------------------ 271 (537)
T 3fp2_A 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN------------------------------------------ 271 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------------
T ss_pred CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh------------------------------------------
Confidence 44321 012467777888889999999999988877
Q ss_pred ccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003946 397 GIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIK 476 (784)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 476 (784)
..|+...|..+...+...|++++|...|.+
T Consensus 272 --------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 272 --------------------------------------------------LHPTPNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp --------------------------------------------------HCCCHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred --------------------------------------------------cCCCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 255567888888899999999999999999
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003946 477 AEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQL 556 (784)
Q Consensus 477 m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 556 (784)
+.+.. +.+..++..+...+...|++++|...|+...+.. +.+..++..+...|...|++++|...++++.+.. +.
T Consensus 302 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 376 (537)
T 3fp2_A 302 AVDLN---PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PT 376 (537)
T ss_dssp HHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 98876 5677888899999999999999999999998865 2356788889999999999999999999988764 34
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC----CCCcHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHh
Q 003946 557 DASCYEALLQSKIVQKDTPGALHLFKEMKESKI----PRSGHQEFEMLVKGCAQN----------HEAGLMAKLLQEVKE 622 (784)
Q Consensus 557 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~ 622 (784)
+...|..+...+...|++++|+..|+++.+... .......+......+... |++++|...|+...+
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 567888888999999999999999998776431 011112233444556666 778888888877776
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 623 GQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 623 ~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
..+ .+...|..+...|.+.|++++|.+.|++..+.
T Consensus 457 ~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 457 LDP--RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 543 24566777777788888888888888777764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-16 Score=163.51 Aligned_cols=234 Identities=13% Similarity=0.105 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVS---HDDAALGHV------------ITLCISLGWLDQAHDLLDEMH 515 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~ 515 (784)
...|..+...+...|++++|...|.+..+.. + .+...+..+ ...+...|++++|...++.+.
T Consensus 71 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 147 (359)
T 3ieg_A 71 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSN---PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3455555555555566666666555555433 1 122222222 244445555555555555554
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHH
Q 003946 516 LAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQ 595 (784)
Q Consensus 516 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 595 (784)
+.. +.+..++..+...|...|++++|...+++..+.. +.+..+|..+...+...|++++|...+++..+.. |.+..
T Consensus 148 ~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~ 223 (359)
T 3ieg_A 148 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKR 223 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchH
Confidence 432 2244445555555555555555555555554432 2244445555555555555555555555544433 23222
Q ss_pred HHHH------------HHHHHHhcCcHHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003946 596 EFEM------------LVKGCAQNHEAGLMAKLLQEVKEGQRIDCGV--HDWNNVIHFFCKKRLMQDAEKALKRMRSLGH 661 (784)
Q Consensus 596 ~~~~------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 661 (784)
.+.. +...+.+.|++++|...++...+..+..|.. ..|..+...|...|++++|.+.+++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-- 301 (359)
T 3ieg_A 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-- 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 2221 1333444444444444444444432211110 12333444445555555555555554442
Q ss_pred CC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 662 LP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 662 ~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
.| +..+|..+...+...| ++++|...+++..+
T Consensus 302 ~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 302 EPDNVNALKDRAEAYLIEE-MYDEAIQDYEAAQE 334 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Confidence 22 3444444444555555 55555555555444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-15 Score=159.29 Aligned_cols=333 Identities=11% Similarity=0.005 Sum_probs=261.3
Q ss_pred chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 003946 252 NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNC 331 (784)
Q Consensus 252 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 331 (784)
|...|..+...+.+.|++++|+..|+.+.+.. +.+..++..+...|...|++++|...++.+.+..+.... +|..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTA----ARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcch----HHHH
Confidence 34567788888999999999999999998864 345688899999999999999999999999887554443 6999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhh
Q 003946 332 LLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTK 411 (784)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (784)
+...|.+.|++++|...|++..+.+. ..
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------------------~~-------------- 104 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSNP--------------------------------------SE-------------- 104 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSCC--------------------------------------CH--------------
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCC--------------------------------------cc--------------
Confidence 99999999999999999998876310 00
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHH
Q 003946 412 DRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAAL 491 (784)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~ 491 (784)
.........+... .....+..+...+...|++++|...++++.+.. +.+..++
T Consensus 105 -----~~~~~~~~~l~~~-------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~ 157 (359)
T 3ieg_A 105 -----QEEKEAESQLVKA-------------------DEMQRLRSQALDAFDGADYTAAITFLDKILEVC---VWDAELR 157 (359)
T ss_dssp -----HHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred -----cChHHHHHHHHHH-------------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCchHHH
Confidence 0000000000000 001233445678899999999999999999886 6678889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH---------
Q 003946 492 GHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYE--------- 562 (784)
Q Consensus 492 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--------- 562 (784)
..+...+...|++++|...++...+.. +.+..++..+...|...|++++|...|++..+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHH
Confidence 999999999999999999999999874 4578999999999999999999999999998764 22333333
Q ss_pred ---HHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHH----HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 003946 563 ---ALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQ----EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNN 635 (784)
Q Consensus 563 ---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~ 635 (784)
.+...+...|++++|+..++++.+.. |.+.. .+..+...+.+.|++++|.+.++...+..+ .+...|..
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~ 311 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP--DNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--ccHHHHHH
Confidence 23566889999999999999998865 44442 355677899999999999999999988643 26778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 003946 636 VIHFFCKKRLMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYA 676 (784)
Q Consensus 636 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~ 676 (784)
+...|...|++++|.+.|++..+. .|+ ...+..+..+..
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 999999999999999999999985 565 555555555443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-15 Score=155.55 Aligned_cols=287 Identities=10% Similarity=-0.029 Sum_probs=185.4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 003946 285 KADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLA 364 (784)
Q Consensus 285 ~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 364 (784)
+.+...+..+...+...|++++|.++|+.+.+..+.+.. .+..++..+.+.|++++|..+++++.+.+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------- 86 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS----CLPVHIGTLVELNKANELFYLSHKLVDLY-------- 86 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT----THHHHHHHHHHHTCHHHHHHHHHHHHHHC--------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh----hHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------
Confidence 345556666677777777777777777777765444433 36666777777777777777777776521
Q ss_pred HhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q 003946 365 AAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEH 444 (784)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (784)
T Consensus 87 -------------------------------------------------------------------------------- 86 (330)
T 3hym_B 87 -------------------------------------------------------------------------------- 86 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003946 445 GILQPTEKIYIKLVKAFLEAG-KTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASS 523 (784)
Q Consensus 445 ~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 523 (784)
+.+...|..+...+...| ++++|...|.+..+.. +.+...|..+...+...|++++|...|+...+... .+.
T Consensus 87 ---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~ 159 (330)
T 3hym_B 87 ---PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCH 159 (330)
T ss_dssp ---TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCS
T ss_pred ---cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccH
Confidence 223456667777777777 7777777777777655 44455677777777777777777777777776542 244
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC-------CCCcHHH
Q 003946 524 SVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKI-------PRSGHQE 596 (784)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~~~~~~ 596 (784)
..+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|+..+++..+... .|....+
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (330)
T 3hym_B 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL 238 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHH
Confidence 556667777777777777777777776653 23566777777777777777777777777665321 1233345
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 003946 597 FEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGY 675 (784)
Q Consensus 597 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~ 675 (784)
+..+...+...|++++|...++...+..+ .+...|..+...|.+.|++++|.+.+++..+. .| +...+..+..++
T Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 239 LNNLGHVCRKLKKYAEALDYHRQALVLIP--QNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhCc--cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 66666666666666666666666655432 13455666666666677777777776666553 34 445555555555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-15 Score=155.40 Aligned_cols=296 Identities=7% Similarity=-0.060 Sum_probs=246.2
Q ss_pred CCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHH
Q 003946 248 AMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQ 327 (784)
Q Consensus 248 ~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~ 327 (784)
+.+.+...+......+...|++++|+.+|+.+.+.. +.+...+..++..+.+.|++++|..+++.+.+..+.+..
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---- 91 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV---- 91 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH----
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH----
Confidence 446666778888888999999999999999998764 345566777888899999999999999999987555544
Q ss_pred HHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccch
Q 003946 328 FYNCLLSCHLKFG-DLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSY 406 (784)
Q Consensus 328 ~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (784)
+|..+...|...| ++++|.+.|++..+.+
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-------------------------------------------------- 121 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLE-------------------------------------------------- 121 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--------------------------------------------------
Confidence 5999999999999 9999999999887621
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC
Q 003946 407 EDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSH 486 (784)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p 486 (784)
+.+...|..+...+...|++++|...|.++.+.. +.
T Consensus 122 -----------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~ 157 (330)
T 3hym_B 122 -----------------------------------------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KG 157 (330)
T ss_dssp -----------------------------------------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TT
T ss_pred -----------------------------------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cc
Confidence 2245678899999999999999999999999876 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------CCCCH
Q 003946 487 DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAG--------IQLDA 558 (784)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~ 558 (784)
+...+..+...+...|++++|...+++..+.. +.+..++..+...|...|++++|...+++..+.. ...+.
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 236 (330)
T 3hym_B 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236 (330)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence 56667779999999999999999999999875 4478899999999999999999999999987642 13345
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIH 638 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 638 (784)
.+|..+...+...|++++|+..+++..+.. |.+...+..+...+.+.|++++|.+.|+...+..+ .+...+..+..
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~ 312 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR--DDTFSVTMLGH 312 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC--CchHHHHHHHH
Confidence 789999999999999999999999998865 66778999999999999999999999999987542 25667888887
Q ss_pred HH-HhcCCHH
Q 003946 639 FF-CKKRLMQ 647 (784)
Q Consensus 639 ~~-~~~g~~~ 647 (784)
++ ...|+.+
T Consensus 313 ~~~~~~g~~~ 322 (330)
T 3hym_B 313 CIEMYIGDSE 322 (330)
T ss_dssp HHHTTTTC--
T ss_pred HHHHHhCchh
Confidence 77 4556543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-18 Score=191.54 Aligned_cols=151 Identities=14% Similarity=0.122 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEK---ENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
..|||+||++|++.|++++|.++|.+|.+ .| +.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG--~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR--KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH--TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC--CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 47999999999999999999999988764 46 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCC-----CcHHHHHHHH
Q 003946 528 SLLKAYIEANRP-REVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPR-----SGHQEFEMLV 601 (784)
Q Consensus 528 ~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~~ll 601 (784)
+||+++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ ..+..| +...+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999985 78999999999999999999999999877754 444444444 223322 2223444555
Q ss_pred HHHHhcC
Q 003946 602 KGCAQNH 608 (784)
Q Consensus 602 ~~~~~~~ 608 (784)
..|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5666544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-18 Score=189.49 Aligned_cols=171 Identities=15% Similarity=0.122 Sum_probs=133.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003946 485 SHDDAALGHVITLCISLGWLDQAHDLLDEMHL---AGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561 (784)
Q Consensus 485 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 561 (784)
..-..||+++|++||+.|++++|.++|++|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34457899999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCh-hHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 003946 562 EALLQSKIVQKDT-PGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFF 640 (784)
Q Consensus 562 ~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~ 640 (784)
|+||.++++.|+. ++|.++|++|.+.|+. |+.++|++++.++.+.+-++.+.++...+.-.....|.+.+-+.|.+.|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~-PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLK-LQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCC-SHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCC-CChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999999985 7899999999999985 5688999999877765433333222221111111112244556677777
Q ss_pred HhcC---------CHHHHHHHHHHH
Q 003946 641 CKKR---------LMQDAEKALKRM 656 (784)
Q Consensus 641 ~~~g---------~~~~A~~~~~~m 656 (784)
.+.+ ..++-.++|++=
T Consensus 283 s~d~~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 283 AKDGRVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp CCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred ccCCCCcCccccCCHHHHHHHHHHH
Confidence 7666 245555666543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-15 Score=159.85 Aligned_cols=304 Identities=9% Similarity=-0.053 Sum_probs=169.8
Q ss_pred hcCChhHHHH-HHHhhhhCCC-CC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcC
Q 003946 265 LFETTRKAEQ-LLDIMPRIGV-KA--DSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFG 340 (784)
Q Consensus 265 ~~g~~~~A~~-l~~~m~~~g~-~p--d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 340 (784)
..|++++|+. .|+...+..- .| +...+..+...+.+.|++++|...|+.+.+..+.... +|..+..+|.+.|
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g 112 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME----AWQYLGTTQAENE 112 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCc
Confidence 4578899988 8887665321 11 3456778888899999999999999998886544443 5889999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHH
Q 003946 341 DLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEA 420 (784)
Q Consensus 341 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (784)
++++|.+.|++..+.+
T Consensus 113 ~~~~A~~~~~~al~~~---------------------------------------------------------------- 128 (368)
T 1fch_A 113 QELLAISALRRCLELK---------------------------------------------------------------- 128 (368)
T ss_dssp CHHHHHHHHHHHHHHC----------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhcC----------------------------------------------------------------
Confidence 9999999998887632
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 003946 421 EVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCIS 500 (784)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~ 500 (784)
+.+..+|..+...+...|++++|...|.++.... +.+...+..+...
T Consensus 129 ---------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~--- 175 (368)
T 1fch_A 129 ---------------------------PDNQTALMALAVSFTNESLQRQACEILRDWLRYT---PAYAHLVTPAEEG--- 175 (368)
T ss_dssp ---------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---TTTGGGCC--------
T ss_pred ---------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHH---
Confidence 3356788889999999999999999999988765 2222222111000
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHH
Q 003946 501 LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALH 579 (784)
Q Consensus 501 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~ 579 (784)
.. ...+ ...+..+...+ ..|++++|...|+++.+..... +..++..+...|...|++++|+.
T Consensus 176 ----~~-----------~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 176 ----AG-----------GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp --------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----hh-----------hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 00 0000 00011111112 4444555555555544432110 24444555555555555555555
Q ss_pred HHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 580 LFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 580 ~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
.++++.+.. |.+..++..+...+...|++++|...|+.+.+..+ .+...|..+...|.+.|++++|.+.|++..+.
T Consensus 239 ~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 239 CFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP--GYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 555544432 34444555555555555555555555555544321 23445666666666666666666666665542
Q ss_pred CCC----------CCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003946 660 GHL----------PNAQTFHSMVTGYAAIGGKYTEVTELWGE 691 (784)
Q Consensus 660 g~~----------p~~~~~~~ll~a~~~~g~~~~~a~~~~~~ 691 (784)
.-. ....+|..+..+|...| ++++|..++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~ 355 (368)
T 1fch_A 315 QRKSRGPRGEGGAMSENIWSTLRLALSMLG-QSDAYGAADAR 355 (368)
T ss_dssp HHTC------CCCCCHHHHHHHHHHHHHHT-CGGGHHHHHTT
T ss_pred CCCCCCccccccchhhHHHHHHHHHHHHhC-ChHhHHHhHHH
Confidence 100 01456666666666666 66666666553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-12 Score=147.92 Aligned_cols=477 Identities=12% Similarity=0.079 Sum_probs=305.8
Q ss_pred cccccccccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCC--CCCchhHHHHHHHHHhccChhhHHHHHHHHHH
Q 003946 76 FSSMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDG--FPRKTLVNKILTSFVESLDSKWLEKAYGLVEQ 153 (784)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 153 (784)
.++...+..+...+|.--...+++|...|.+.+|++++++..-.+. .-+....+.++....+. +.+++.+....+..
T Consensus 971 idqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~ 1049 (1630)
T 1xi4_A 971 IDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN 1049 (1630)
T ss_pred HHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh
Confidence 3344444555566676677777888888888888888888773221 02234445566555554 44444443333331
Q ss_pred HHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhcc
Q 003946 154 AFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQD 233 (784)
Q Consensus 154 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~ 233 (784)
. ...-+...+...|.+++|..+|++... .....+.++. . .+.+++|.++.+
T Consensus 1050 ~------------d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~--------i~nldrAiE~Ae- 1100 (1630)
T 1xi4_A 1050 Y------------DAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---H--------IGNLDRAYEFAE- 1100 (1630)
T ss_pred c------------cHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---H--------HhhHHHHHHHHH-
Confidence 1 122255666778888888888887531 2222344432 1 377888887777
Q ss_pred CCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003946 234 GRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRH 313 (784)
Q Consensus 234 ~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~ 313 (784)
+.. +..+|..+-.++.+.|++++|+..|... -|...|.-++..|.+.|++++|.+.+..
T Consensus 1101 -rvn--------------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1101 -RCN--------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred -hcC--------------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 441 2456778888888888888888888542 3566777788888888888888888877
Q ss_pred HHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccc
Q 003946 314 IDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDL 393 (784)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (784)
..+...... +.+.++.+|++.+++++... | ..
T Consensus 1160 Ark~~~e~~-----Idt~LafaYAKl~rleele~-f---I~--------------------------------------- 1191 (1630)
T 1xi4_A 1160 ARKKARESY-----VETELIFALAKTNRLAELEE-F---IN--------------------------------------- 1191 (1630)
T ss_pred HHhhccccc-----ccHHHHHHHHhhcCHHHHHH-H---Hh---------------------------------------
Confidence 666432211 24457888888877764332 2 11
Q ss_pred cccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003946 394 ENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHF 473 (784)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 473 (784)
.|+...|..+...|...|++++|..+
T Consensus 1192 ------------------------------------------------------~~n~ad~~~iGd~le~eg~YeeA~~~ 1217 (1630)
T 1xi4_A 1192 ------------------------------------------------------GPNNAHIQQVGDRCYDEKMYDAAKLL 1217 (1630)
T ss_pred ------------------------------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34445677788899999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003946 474 LIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAG 553 (784)
Q Consensus 474 ~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 553 (784)
|... ..|..+...+++.|+++.|.+.+++. .+..+|..+-.+|...|++..|......+
T Consensus 1218 Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I---- 1276 (1630)
T 1xi4_A 1218 YNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI---- 1276 (1630)
T ss_pred HHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh----
Confidence 9884 24888999999999999999999876 36789999999999999999988876653
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhcCCCCC---
Q 003946 554 IQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN--HEAGLMAKLLQEVKEGQRIDC--- 628 (784)
Q Consensus 554 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~p--- 628 (784)
..+...+..++..|.+.|.+++|+.+++...... +.....|+-+...+++- ++..++.++|..-.. +.|
T Consensus 1277 -iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH~gmftELaiLyaKy~peklmEhlk~f~~rin---i~k~~r 1350 (1630)
T 1xi4_A 1277 -VVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN---IPKVLR 1350 (1630)
T ss_pred -hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc---cchHhH
Confidence 3466677799999999999999999998776544 55555676666666664 455566666554332 222
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHH-------------HHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003946 629 ---GVHDWNNVIHFFCKKRLMQDAEKA-------------LKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEM 692 (784)
Q Consensus 629 ---~~~~y~~li~~~~~~g~~~~A~~~-------------~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m 692 (784)
+...|.-++..|.+.|+++.|... |.+... -..|...|.-.+.-|...+ ..+..-+...
T Consensus 1351 ~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~---P~~lndLl~~ 1425 (1630)
T 1xi4_A 1351 AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK---PLLLNDLLMV 1425 (1630)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhC---hHHHHHHHHH
Confidence 466799999999999999998842 222221 1235555655555555322 2222222222
Q ss_pred HhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003946 693 KSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTL 746 (784)
Q Consensus 693 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 746 (784)
.. ..+. ++-.+..+.+.|.+.-+...+......+...=..+++.+
T Consensus 1426 l~----~rlD-----~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el 1470 (1630)
T 1xi4_A 1426 LS----PRLD-----HTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNL 1470 (1630)
T ss_pred hh----hcCC-----hHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHH
Confidence 21 1121 233555666666666666666666554433333333333
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8.8e-13 Score=151.58 Aligned_cols=412 Identities=12% Similarity=0.138 Sum_probs=299.0
Q ss_pred HhccChhhHHHHH--------HHHHHHHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcC--CCCChHHHHH
Q 003946 136 VESLDSKWLEKAY--------GLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATE--QYPPVTAWSA 205 (784)
Q Consensus 136 ~~~~~~~~~~~a~--------~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ 205 (784)
.+..+.+.+..++ +++++.....-+...+|+-....+.+|...|.+.+|++++++..-.+ +.-+...-|.
T Consensus 948 v~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl 1027 (1630)
T 1xi4_A 948 VRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL 1027 (1630)
T ss_pred HHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH
Confidence 3334555555554 45555444333445788888889999999999999999999998331 1123455666
Q ss_pred HHHHHhhcCCCchhhHHHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCC
Q 003946 206 ILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVK 285 (784)
Q Consensus 206 ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~ 285 (784)
++....+.. .++..+....++ . ....-+-..+...|.+++|..+|+...
T Consensus 1028 Li~tAIkaD------~~Rv~eyI~kLd--~------------------~d~~eIA~Iai~lglyEEAf~IYkKa~----- 1076 (1630)
T 1xi4_A 1028 LILTAIKAD------RTRVMEYINRLD--N------------------YDAPDIANIAISNELFEEAFAIFRKFD----- 1076 (1630)
T ss_pred HHHHHHHhC------hhhHHHHHHHhh--h------------------ccHHHHHHHHHhCCCHHHHHHHHHHcC-----
Confidence 666555531 244444443333 1 113346677888999999999999852
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 003946 286 ADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAA 365 (784)
Q Consensus 286 pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 365 (784)
-.....+.++ -..+++++|.++.++... +. +|..+..++.+.|++++|++.|.+-
T Consensus 1077 ~~~~A~~VLi---e~i~nldrAiE~Aervn~---p~------vWsqLAKAql~~G~~kEAIdsYiKA------------- 1131 (1630)
T 1xi4_A 1077 VNTSAVQVLI---EHIGNLDRAYEFAERCNE---PA------VWSQLAKAQLQKGMVKEAIDSYIKA------------- 1131 (1630)
T ss_pred CHHHHHHHHH---HHHhhHHHHHHHHHhcCC---HH------HHHHHHHHHHhCCCHHHHHHHHHhc-------------
Confidence 1222233332 377889999998886522 21 7999999999999999999998432
Q ss_pred hchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcC
Q 003946 366 AMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHG 445 (784)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (784)
T Consensus 1132 -------------------------------------------------------------------------------- 1131 (1630)
T 1xi4_A 1132 -------------------------------------------------------------------------------- 1131 (1630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003946 446 ILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSV 525 (784)
Q Consensus 446 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 525 (784)
-|...|..++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+. + .++...
T Consensus 1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~----~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad 1197 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETELIFALAKTNRLAELEEFI----N---GPNNAH 1197 (1630)
T ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHH
Confidence 234567789999999999999999999877654 23323345999999999998644442 2 357777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA 605 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 605 (784)
|..+...|...|++++|..+|... ..|..+...|.+.|++++|++.+++. .+..+|..+-.+|.
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHh
Confidence 888999999999999999999985 48999999999999999999999876 23579999999999
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CCHHH
Q 003946 606 QNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIG-GKYTE 684 (784)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g-~~~~~ 684 (784)
..|++..|......+.. +...+..++..|.+.|.+++|+.+++.-+... .-....|+-+...|++.. ++..+
T Consensus 1262 e~~Ef~LA~~cgl~Iiv------~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHIVV------HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred hhhHHHHHHHHHHhhhc------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHH
Confidence 99999999998776542 44558899999999999999999998887543 234556766666666643 13444
Q ss_pred HHHHHHHHHhcccCCCCCC------CHHHHHHHHHHHHhcCChHHHHH
Q 003946 685 VTELWGEMKSFASSTSMNF------DEELLDSVLYTFVRGGFFARANE 726 (784)
Q Consensus 685 a~~~~~~m~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~ 726 (784)
+.++|..- .+++| +...|.-++..|.+.|+++.|..
T Consensus 1335 hlk~f~~r------ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1335 HLELFWSR------VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHh------cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44444422 22333 56789999999999999999984
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-15 Score=157.33 Aligned_cols=275 Identities=12% Similarity=-0.052 Sum_probs=186.0
Q ss_pred HHHHHhhh-hhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHh
Q 003946 222 ELILEIGY-LFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYER 300 (784)
Q Consensus 222 ~~~~~a~~-~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~ 300 (784)
|.+++|+. .|+ +...... .....+...|..+...+.+.|++++|+..|+.+.+.. +.+..++..+...|.+
T Consensus 39 ~~~~~a~~~~~~--~a~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 110 (368)
T 1fch_A 39 SDYDDLTSATYD--KGYQFEE-----ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAE 110 (368)
T ss_dssp -------CHHHH--CCCCCCS-----SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh--HHHhcCC-----CCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 67788887 666 4322000 1112245678889999999999999999999999864 4466789999999999
Q ss_pred cCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCC
Q 003946 301 NGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTP 380 (784)
Q Consensus 301 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (784)
.|++++|.+.|+.+.+..+.... +|..+...|.+.|++++|.+.|+++...+. ..
T Consensus 111 ~g~~~~A~~~~~~al~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------~~--- 165 (368)
T 1fch_A 111 NEQELLAISALRRCLELKPDNQT----ALMALAVSFTNESLQRQACEILRDWLRYTP------------------AY--- 165 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHTST------------------TT---
T ss_pred CcCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------------------Cc---
Confidence 99999999999999887655444 699999999999999999999999887431 00
Q ss_pred CCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHH
Q 003946 381 SEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKA 460 (784)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 460 (784)
...+....... ....+. ..+. .+..
T Consensus 166 ----------------~~~~~~~~~~~-------------------------------------~~~~~~-~~~~-~~~~ 190 (368)
T 1fch_A 166 ----------------AHLVTPAEEGA-------------------------------------GGAGLG-PSKR-ILGS 190 (368)
T ss_dssp ----------------GGGCC-----------------------------------------------------C-TTHH
T ss_pred ----------------HHHHHHHHHHh-------------------------------------hhhccc-HHHH-HHHH
Confidence 00000000000 000111 1111 2222
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 003946 461 FLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPR 540 (784)
Q Consensus 461 ~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 540 (784)
+...|++++|...|.++.+..+ -.++..++..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|+++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDP-TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HhhcccHHHHHHHHHHHHHhCc-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHH
Confidence 3377888888888888877652 11257778888888888888888888888887763 335777888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 541 EVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 541 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
+|...|+++.+.. +.+...|..+...|...|++++|...|+++.+.
T Consensus 269 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 269 EAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888876653 235667777777777778888887777776653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-12 Score=142.89 Aligned_cols=354 Identities=8% Similarity=-0.050 Sum_probs=292.4
Q ss_pred CchhhHHHHHHHhhh----cCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCh
Q 003946 251 PNTNTFNIALAGCLL----FETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYER----NGRREELRKLQRHIDEAVNLSD 322 (784)
Q Consensus 251 p~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~~ 322 (784)
.|..++..+-..|.. .+++++|+..|+...+.| +...+..|...|.. .++.++|.+.|+...+.+.+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~-- 111 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLP-- 111 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH--
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH--
Confidence 355566666666766 899999999999998865 56778888888998 89999999999998875432
Q ss_pred hhHHHHHHHHHHHHHh----cCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccc
Q 003946 323 IQFRQFYNCLLSCHLK----FGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGI 398 (784)
Q Consensus 323 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (784)
. .+..|-..|.. .+++++|...|++..+.+
T Consensus 112 ~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------------------------------------------ 145 (490)
T 2xm6_A 112 Q----AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG------------------------------------------ 145 (490)
T ss_dssp H----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------------------------------
T ss_pred H----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------------------------------------------
Confidence 2 47778888888 789999999998776532
Q ss_pred ccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHH----cCChHHHHHHH
Q 003946 399 IENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLE----AGKTKELTHFL 474 (784)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~ 474 (784)
++..+..+...|.. .+++++|.+.|
T Consensus 146 ---------------------------------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 146 ---------------------------------------------------RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp ---------------------------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred ---------------------------------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 23455666667766 78999999999
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHH
Q 003946 475 IKAEKENLQVSHDDAALGHVITLCIS----LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE----ANRPREVTALL 546 (784)
Q Consensus 475 ~~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 546 (784)
++..+.+ +...+..+...|.. .+++++|...|+...+.| +...+..+...|.. .++.++|...|
T Consensus 175 ~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 175 SKAAEQG-----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHCC-----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9998766 46667788888887 899999999999999875 67888888888887 78999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc-----CcHHHHHHHH
Q 003946 547 RDARSAGIQLDASCYEALLQSKIV----QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN-----HEAGLMAKLL 617 (784)
Q Consensus 547 ~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~ 617 (784)
++..+.| +...+..+-..|.. .++.++|+..|++..+.| +...+..+...|... +++++|...|
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 9998754 56677777777777 889999999999998765 355777888888887 8999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHH
Q 003946 618 QEVKEGQRIDCGVHDWNNVIHFFCKKR---LMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA----IGGKYTEVTELWG 690 (784)
Q Consensus 618 ~~~~~~~~~~p~~~~y~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~~~~~a~~~~~ 690 (784)
+...+.+ +...+..+...|...| +.++|++.|++..+.| +...+..+-..|.. .+ ++++|...++
T Consensus 320 ~~a~~~~----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~ 391 (490)
T 2xm6_A 320 TKSAEQG----DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKK-DEQQAAIWMR 391 (490)
T ss_dssp HHHHHTT----CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHH
T ss_pred HHHHhcC----CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHH
Confidence 9998764 5567888888888867 7899999999999874 67888888888888 78 9999999999
Q ss_pred HHHhcccCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 003946 691 EMKSFASSTSMNFDEELLDSVLYTFVR----GGFFARANEVVAMMEEGKM 736 (784)
Q Consensus 691 ~m~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 736 (784)
+..+ .+ ++..+..|...|.. .++.++|.+.+++..+.|.
T Consensus 392 ~A~~----~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 392 KAAE----QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHH----TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHh----CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9887 22 57788899999998 8999999999999998763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-15 Score=156.52 Aligned_cols=268 Identities=10% Similarity=-0.011 Sum_probs=222.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++|...|++..+.. +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD---PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 44568889999999999999999999999886 6788899999999999999999999999999875 3468999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCC--cHHH
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLD-----------ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRS--GHQE 596 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~ 596 (784)
...|...|++++|...|+++.+.. |+ ...+..+...+...|++++|+..++++.+.. |. +..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 215 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN--GDMIDPDL 215 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS--CSSCCHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--cCccCHHH
Confidence 999999999999999999998752 32 2234455788889999999999999999876 55 7889
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 003946 597 FEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGY 675 (784)
Q Consensus 597 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~ 675 (784)
+..+...+...|++++|.+.|+...+..+ .+..+|+.+..+|...|++++|++.|++..+. .| +..+|..+...|
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRP--EDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence 99999999999999999999999988653 35778999999999999999999999999885 45 488899999999
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCCCC-------CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003946 676 AAIGGKYTEVTELWGEMKSFASSTSM-------NFDEELLDSVLYTFVRGGFFARANEVVAM 730 (784)
Q Consensus 676 ~~~g~~~~~a~~~~~~m~~~~~~~~~-------~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 730 (784)
...| ++++|...++++.+..++..- ..+...|..+..++...|+.+.+.++.++
T Consensus 292 ~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 292 INLG-AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHT-CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHCC-CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999 999999999998875433211 11367899999999999999998887765
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-15 Score=156.53 Aligned_cols=98 Identities=6% Similarity=-0.139 Sum_probs=57.4
Q ss_pred chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 003946 252 NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNC 331 (784)
Q Consensus 252 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 331 (784)
+...|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+..+.... +|..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLK----ALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH----HHHH
Confidence 34456666666666666666666666666543 234455666666666666666666666666554333322 4666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 003946 332 LLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
+...|.+.|++++|...|+++.+
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~ 161 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIK 161 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHH
Confidence 66666666666666666665554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-13 Score=149.14 Aligned_cols=415 Identities=11% Similarity=0.058 Sum_probs=259.3
Q ss_pred ccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccccc
Q 003946 164 EKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKKCN 243 (784)
Q Consensus 164 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~~~ 243 (784)
+...+..++. +.+.|+++.|..+|+++.+.- +-+...|..++..+.+. |.+++|..+|+ +..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~--------~~~~~a~~~~~--ral------ 73 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKA--------KNYDKVEKLFQ--RCL------ 73 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHT--------TCHHHHHHHHH--HHT------
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhc--------CCHHHHHHHHH--HHH------
Confidence 5556666776 467888999999999988752 23556788888777665 77888888888 653
Q ss_pred ccccCCCCchhhHHHHHHHh-hhcCChhHHHH----HHHhhhh-CCCCCC-hhHHHHHHHHHHh---------cCCHHHH
Q 003946 244 APLIAMKPNTNTFNIALAGC-LLFETTRKAEQ----LLDIMPR-IGVKAD-SNLLIIMAHIYER---------NGRREEL 307 (784)
Q Consensus 244 ~~~~~~~p~~~~~~~ll~~~-~~~g~~~~A~~----l~~~m~~-~g~~pd-~~~~~~li~~~~~---------~g~~~~A 307 (784)
...|+...|...+... ...|++++|.+ +|+...+ .|..|+ ...|...+....+ .|+++.|
T Consensus 74 ----~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a 149 (530)
T 2ooe_A 74 ----MKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAV 149 (530)
T ss_dssp ----TTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHH
T ss_pred ----hcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHH
Confidence 2356766776666433 34577777665 6666554 355553 4667777766654 6889999
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHHHHH-------------hcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhc
Q 003946 308 RKLQRHIDEAVNLSDIQFRQFYNCLLSCHL-------------KFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVG 374 (784)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 374 (784)
.++|+...+. +..... .+|.......- +.++++.|..++..+..... +
T Consensus 150 ~~~y~~al~~-P~~~~~--~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~--------~-------- 210 (530)
T 2ooe_A 150 RRVYQRGCVN-PMINIE--QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMK--------G-------- 210 (530)
T ss_dssp HHHHHHHTTS-CCTTHH--HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH--------H--------
T ss_pred HHHHHHHHhc-hhhhHH--HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------H--------
Confidence 9999998873 221111 13443332111 12223333333332221000 0
Q ss_pred cCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCC----
Q 003946 375 VNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPT---- 450 (784)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---- 450 (784)
++.....+.|+
T Consensus 211 -----------------------------------------------------------------l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 211 -----------------------------------------------------------------LDRNAPSVPPQNTPQ 225 (530)
T ss_dssp -----------------------------------------------------------------CCSSSCCCCCC--CC
T ss_pred -----------------------------------------------------------------hccccccCCCCCChh
Confidence 00000001222
Q ss_pred ----HHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-------cCCHH------
Q 003946 451 ----EKIYIKLVKAFLEA----GKT----KELTHFLIKAEKENLQVSHDDAALGHVITLCIS-------LGWLD------ 505 (784)
Q Consensus 451 ----~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~-------~g~~~------ 505 (784)
...|...+...... ++. ++|..+|++..... +-+...|......+.+ .|+++
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~---p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 24555555333222 222 36778888887764 5567778877777775 68876
Q ss_pred -HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHH
Q 003946 506 -QAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLD--ASCYEALLQSKIVQKDTPGALHLFK 582 (784)
Q Consensus 506 -~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~ 582 (784)
+|..+|+...+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|+
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88888888876323346888888888888889999999999988875 443 2478888888888888888888888
Q ss_pred HhHhcCCCCCcHHHHHHHHHH-HHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 003946 583 EMKESKIPRSGHQEFEMLVKG-CAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLG- 660 (784)
Q Consensus 583 ~m~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g- 660 (784)
+..+.. |.....|...... +...|+.++|..+|+...+..+ .+...|..++..+.+.|+.++|..+|++....+
T Consensus 381 ~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p--~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 381 KAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHTCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHhcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 887653 3333333322222 2356777777777777766442 245667777777777777777777777777653
Q ss_pred CCCC--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 661 HLPN--AQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 661 ~~p~--~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
..|+ ...|...+.-....| +.+.+..+.+++.+
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G-~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIG-DLASILKVEKRRFT 491 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSS-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 1222 346666666666667 77777777777665
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-12 Score=143.20 Aligned_cols=319 Identities=11% Similarity=-0.013 Sum_probs=255.4
Q ss_pred chhhHHHHHHHhhh----cCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCChh
Q 003946 252 NTNTFNIALAGCLL----FETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYER----NGRREELRKLQRHIDEAVNLSDI 323 (784)
Q Consensus 252 ~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~~~ 323 (784)
+...+..+-..|.. .+++++|+..|+...+.| +...+..|...|.. .+++++|.+.|+...+.+.+ .
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~ 148 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRD--S 148 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH--H
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH--H
Confidence 34455556666666 788999999999888765 56677778888888 78999999999988775432 2
Q ss_pred hHHHHHHHHHHHHHh----cCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccc
Q 003946 324 QFRQFYNCLLSCHLK----FGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGII 399 (784)
Q Consensus 324 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (784)
.+..|...|.. .++.++|.+.|++..+.
T Consensus 149 ----a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------------------------------------------- 180 (490)
T 2xm6_A 149 ----GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------------------------------------------- 180 (490)
T ss_dssp ----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------------------------------------------
T ss_pred ----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------------------------------------------
Confidence 47778888877 78899999999877652
Q ss_pred cccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHH----cCChHHHHHHHH
Q 003946 400 ENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLE----AGKTKELTHFLI 475 (784)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~ 475 (784)
.+...+..+...|.. .+++++|...|.
T Consensus 181 -------------------------------------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 181 -------------------------------------------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp -------------------------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred -------------------------------------------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 234566677777777 789999999999
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHH
Q 003946 476 KAEKENLQVSHDDAALGHVITLCIS----LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE----ANRPREVTALLR 547 (784)
Q Consensus 476 ~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 547 (784)
+..+.+ +...+..+...|.. .+++++|...|+...+.| +...+..+...|.. .++.++|...|+
T Consensus 212 ~a~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 212 KSATSG-----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 988766 34557777777776 789999999999988875 56777788888888 899999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC---cHHHHHHHHHH
Q 003946 548 DARSAGIQLDASCYEALLQSKIVQ-----KDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH---EAGLMAKLLQE 619 (784)
Q Consensus 548 ~m~~~g~~p~~~t~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~ 619 (784)
+..+.| +...+..+-..|... ++.++|+..|++..+.+ +...+..+...|...| +.++|.++|+.
T Consensus 284 ~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 284 KSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----DATAQANLGAIYFRLGSEEEHKKAVEWFRK 356 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 988754 566777777888877 89999999999998865 2457777888887766 78999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHHH
Q 003946 620 VKEGQRIDCGVHDWNNVIHFFCK----KRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA----IGGKYTEVTELWGE 691 (784)
Q Consensus 620 ~~~~~~~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~~~~~a~~~~~~ 691 (784)
..+.+ +...+..|...|.. .+++++|.+.|++..+.| +...+..|-..|.. .+ +.++|...|++
T Consensus 357 a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~ 428 (490)
T 2xm6_A 357 AAAKG----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVER-DYVQAWAWFDT 428 (490)
T ss_dssp HHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHH
T ss_pred HHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHH
Confidence 88763 67788999999988 899999999999999875 57778888888887 78 99999999999
Q ss_pred HHhc
Q 003946 692 MKSF 695 (784)
Q Consensus 692 m~~~ 695 (784)
..+.
T Consensus 429 A~~~ 432 (490)
T 2xm6_A 429 ASTN 432 (490)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 8873
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-15 Score=154.95 Aligned_cols=280 Identities=12% Similarity=0.075 Sum_probs=134.7
Q ss_pred HHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhc
Q 003946 222 ELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERN 301 (784)
Q Consensus 222 ~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~ 301 (784)
|++++|.+.++ ++. .| .+|..+..++.+.|++++|++.|.. .+|..+|..++..+...
T Consensus 17 ~~ld~A~~fae--~~~------------~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 17 GNLDRAYEFAE--RCN------------EP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHH--hCC------------Ch--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhC
Confidence 77899999998 652 33 3899999999999999999999964 36888999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCC
Q 003946 302 GRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPS 381 (784)
Q Consensus 302 g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (784)
|++++|.+.++...+. .++.. +.+.|+.+|.+.|+++++.++++
T Consensus 75 g~~EeAi~yl~~ark~-~~~~~----i~~~Li~~Y~Klg~l~e~e~f~~------------------------------- 118 (449)
T 1b89_A 75 GNWEELVKYLQMARKK-ARESY----VETELIFALAKTNRLAELEEFIN------------------------------- 118 (449)
T ss_dssp ---------------------------------------CHHHHTTTTT-------------------------------
T ss_pred CCHHHHHHHHHHHHHh-Cccch----hHHHHHHHHHHhCCHHHHHHHHc-------------------------------
Confidence 9999999977776664 33322 68999999999999998887652
Q ss_pred CccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHH
Q 003946 382 EQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAF 461 (784)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 461 (784)
.|+..+|+.+...|
T Consensus 119 ------------------------------------------------------------------~pn~~a~~~IGd~~ 132 (449)
T 1b89_A 119 ------------------------------------------------------------------GPNNAHIQQVGDRC 132 (449)
T ss_dssp ------------------------------------------------------------------CC------------
T ss_pred ------------------------------------------------------------------CCcHHHHHHHHHHH
Confidence 45667999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPRE 541 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 541 (784)
...|.+++|...|..+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.
T Consensus 133 ~~~g~yeeA~~~Y~~a-----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~l 195 (449)
T 1b89_A 133 YDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 195 (449)
T ss_dssp ----CTTTHHHHHHHT-----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHHHh-----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHH
Confidence 9999999999999976 13889999999999999999999988 278999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc--CcHHHHHHHHHH
Q 003946 542 VTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN--HEAGLMAKLLQE 619 (784)
Q Consensus 542 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~ 619 (784)
|......+. .++.-...++..|.+.|.+++|+.+++...... +.....|+-+.-.|++- +++.+..++|.
T Consensus 196 A~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~- 267 (449)
T 1b89_A 196 AQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFW- 267 (449)
T ss_dssp HHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS-
T ss_pred HHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-
Confidence 966655432 344445579999999999999999999887544 55567788887777765 34555555543
Q ss_pred HHhcCCCCC------CHHHHHHHHHHHHhcCCHHHHHHH
Q 003946 620 VKEGQRIDC------GVHDWNNVIHFFCKKRLMQDAEKA 652 (784)
Q Consensus 620 ~~~~~~~~p------~~~~y~~li~~~~~~g~~~~A~~~ 652 (784)
.+-.+.| +...|.-++..|...++++.|...
T Consensus 268 --~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 268 --SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp --TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred --HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 2222222 456799999999999999998873
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-12 Score=143.66 Aligned_cols=424 Identities=11% Similarity=0.038 Sum_probs=276.0
Q ss_pred cccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCc-hhHHHHHHHHHhccChhhHHHHHHHHHHHHHhccccc
Q 003946 84 LVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRK-TLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQIL 162 (784)
Q Consensus 84 ~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 162 (784)
...|.+...|..++. +...|++++|..+|+++.+.. |+. ..+...+..+.+.|+ .++|..++++++.. .
T Consensus 7 ~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~---~~~a~~~~~ral~~----~ 76 (530)
T 2ooe_A 7 EENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKN---YDKVEKLFQRCLMK----V 76 (530)
T ss_dssp HHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTT----C
T ss_pred hhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhc----C
Confidence 345678889999888 477899999999999988843 544 455666666666543 45577777777665 2
Q ss_pred CccchHHHHHH-HHhhCCCCccHHH----HHHHHhhc-CCCC-ChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCC
Q 003946 163 LEKEPLIYLSL-GLSKCGLPVPAST----ILRKLVAT-EQYP-PVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGR 235 (784)
Q Consensus 163 ~~~~~~~~li~-~~~~~g~~~~A~~----~~~~m~~~-g~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 235 (784)
|+++.+...+. .....|+++.|.+ +|++..+. |..| +...|...+....+
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~----------------------- 133 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKG----------------------- 133 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH-----------------------
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhc-----------------------
Confidence 34444444443 2335677777765 55554432 3333 23344433321111
Q ss_pred cCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHH-------------HhcC
Q 003946 236 VDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIY-------------ERNG 302 (784)
Q Consensus 236 m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~-------------~~~g 302 (784)
. .+. . .+.+.|+++.|..+|+..++....+....|....... .+.+
T Consensus 134 ~----------~~~----~-------~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~ 192 (530)
T 2ooe_A 134 V----------EAV----G-------SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSR 192 (530)
T ss_dssp S----------CCC----S-------STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHH
T ss_pred C----------CCc----c-------cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhH
Confidence 0 000 0 1234678889999999888731111123333222211 1234
Q ss_pred CHHHHHHHHHHHHh------hc----CCChh----hHHHHHHHHHHHHHhc----CCh----hHHHHHHHHHHHHHHHHH
Q 003946 303 RREELRKLQRHIDE------AV----NLSDI----QFRQFYNCLLSCHLKF----GDL----NSASKMVLEMLQRAKEAR 360 (784)
Q Consensus 303 ~~~~A~~l~~~~~~------~~----~~~~~----~~~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~~~ 360 (784)
+++.|..++..+.. .. +|... .....|...+..-... ++. ++|..+|++....
T Consensus 193 ~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~----- 267 (530)
T 2ooe_A 193 DYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV----- 267 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-----
Confidence 56667766665321 10 11100 0011344444322221 111 2344444444432
Q ss_pred HHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003946 361 NSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELI 440 (784)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (784)
T Consensus 268 -------------------------------------------------------------------------------- 267 (530)
T 2ooe_A 268 -------------------------------------------------------------------------------- 267 (530)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCcCCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003946 441 TTEHGILQPTEKIYIKLVKAFLE-------AGKTK-------ELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQ 506 (784)
Q Consensus 441 ~~~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 506 (784)
.+-+...|......+.+ .|+++ +|..+|++..+.- .+.+...|..++..+.+.|++++
T Consensus 268 ------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~--~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 268 ------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp ------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT--CSSCHHHHHHHHHHHHHTTCHHH
T ss_pred ------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHhcCCHHH
Confidence 13356788888887775 68887 8999999988632 14567889999999999999999
Q ss_pred HHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCChhHHHHHHHH
Q 003946 507 AHDLLDEMHLAGVRAS--SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS-KIVQKDTPGALHLFKE 583 (784)
Q Consensus 507 a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g~~~~A~~~~~~ 583 (784)
|..+|+.+.+. .|+ ...|..++..+.+.|++++|..+|++..+... .+...|...... +...|+.++|..+|++
T Consensus 340 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~ 416 (530)
T 2ooe_A 340 VHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFEL 416 (530)
T ss_dssp HHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 99999999985 343 35899999999999999999999999987531 223333322222 3368999999999999
Q ss_pred hHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 584 MKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG--VHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 584 m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
..+.. |.+...+..++..+.+.|+.++|..+|+......+..|+ ...|...+......|+.+.+..+++++.+.
T Consensus 417 al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 417 GLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88765 777889999999999999999999999999987554443 557989899999999999999999998874
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.66 E-value=9.5e-15 Score=151.00 Aligned_cols=280 Identities=12% Similarity=0.099 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhH
Q 003946 142 KWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAA 221 (784)
Q Consensus 142 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 221 (784)
+.+++|.+.++++ .+|++|..|..++.+.|++++|.+.|.+. +|..+|..++.++...
T Consensus 17 ~~ld~A~~fae~~--------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~-------- 74 (449)
T 1b89_A 17 GNLDRAYEFAERC--------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS-------- 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC--------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC--------
Confidence 3455677777764 35668888888888999999998888653 4777888888877664
Q ss_pred HHHHHhhhhhccCCcCccccccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhc
Q 003946 222 ELILEIGYLFQDGRVDPRKKCNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERN 301 (784)
Q Consensus 222 ~~~~~a~~~~~~~~m~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~ 301 (784)
|++++|...++ ...+ ..++..+.+.++.+|++.|+++++.++++ .|+..+|..+++.|...
T Consensus 75 g~~EeAi~yl~--~ark----------~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~ 135 (449)
T 1b89_A 75 GNWEELVKYLQ--MARK----------KARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDE 135 (449)
T ss_dssp ----------------------------------------------CHHHHTTTTT-------CC---------------
T ss_pred CCHHHHHHHHH--HHHH----------hCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHc
Confidence 88888888666 4421 24556778888888999999888887774 36777888899999999
Q ss_pred CCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCC
Q 003946 302 GRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPS 381 (784)
Q Consensus 302 g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (784)
|.+++|...|..+. .|..|++++++.|++++|.+.+.++.
T Consensus 136 g~yeeA~~~Y~~a~------------n~~~LA~~L~~Lg~yq~AVea~~KA~---------------------------- 175 (449)
T 1b89_A 136 KMYDAAKLLYNNVS------------NFGRLASTLVHLGEYQAAVDGARKAN---------------------------- 175 (449)
T ss_dssp -CTTTHHHHHHHTT------------CHHHHHHHHHTTTCHHHHHHHHHHHT----------------------------
T ss_pred CCHHHHHHHHHHhh------------hHHHHHHHHHHhccHHHHHHHHHHcC----------------------------
Confidence 99999999888762 28899999999999999888887552
Q ss_pred CccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHH
Q 003946 382 EQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAF 461 (784)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 461 (784)
++.+|..++.+|
T Consensus 176 --------------------------------------------------------------------~~~~Wk~v~~aC 187 (449)
T 1b89_A 176 --------------------------------------------------------------------STRTWKEVCFAC 187 (449)
T ss_dssp --------------------------------------------------------------------CHHHHHHHHHHH
T ss_pred --------------------------------------------------------------------CchhHHHHHHHH
Confidence 236888899999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCh
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEA--NRP 539 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~ 539 (784)
...|+++.|......+ ...+.-...++..|.+.|.+++|..+++...... +.....|+-|.-+|++- +++
T Consensus 188 v~~~ef~lA~~~~l~L-------~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~ 259 (449)
T 1b89_A 188 VDGKEFRLAQMCGLHI-------VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKM 259 (449)
T ss_dssp HHTTCHHHHHHTTTTT-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCcHHHHHHHHHHH-------HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999885544432 2333335568888889999999999888887655 45677888887777765 344
Q ss_pred HHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCChhHHHHH
Q 003946 540 REVTALLRDARSAGIQL------DASCYEALLQSKIVQKDTPGALHL 580 (784)
Q Consensus 540 ~~A~~~~~~m~~~g~~p------~~~t~~~li~~~~~~g~~~~A~~~ 580 (784)
.+.+++|..- .+++| +...|.-+...|.+.++++.|...
T Consensus 260 ~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 260 REHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 5555554421 11222 345688888888888888887664
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-14 Score=146.19 Aligned_cols=270 Identities=11% Similarity=-0.036 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
...|..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...|+.+.+.. +.+..++..+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 3456778888999999999999999999876 5678889999999999999999999999999874 34788999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHH--------------HH-HHHHcCChhHHHHHHHHhHhcCCCCCcH
Q 003946 531 KAYIEANRPREVTALLRDARSAGIQLDA-SCYEAL--------------LQ-SKIVQKDTPGALHLFKEMKESKIPRSGH 594 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 594 (784)
..|...|++++|...++++.+.. |+. ..+..+ .. .+...|++++|+..++++.+.. |.+.
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 172 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDA 172 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCH
Confidence 99999999999999999998763 332 222222 22 2677889999999999998875 6678
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003946 595 QEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTG 674 (784)
Q Consensus 595 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 674 (784)
..+..+...+...|++++|.+.++.+.+..+ .+...|..+...|...|++++|.+.+++..+.. +.+..+|..+...
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRP--DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 8999999999999999999999999988653 356789999999999999999999999998852 3357889999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhcccCCCCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 675 YAAIGGKYTEVTELWGEMKSFASSTSMNF-------DEELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 675 ~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
+...| ++++|...++++.+..+...... +...|..+...|.+.|++++|.+++++..
T Consensus 250 ~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 250 YSNMS-QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHhc-cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999 99999999999887432211111 46789999999999999999999987543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.7e-14 Score=146.05 Aligned_cols=153 Identities=15% Similarity=0.020 Sum_probs=72.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 003946 498 CISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGA 577 (784)
Q Consensus 498 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 577 (784)
+...|++++|...++++.+.. +.+..++..+...|.+.|++++|...++++.+.. +.+..+|..+...+...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 334455555555555555443 2244555555555555555555555555554432 12344555555555555555555
Q ss_pred HHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC----------CCHHHHHHHHHHHHhcCCHH
Q 003946 578 LHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRID----------CGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 578 ~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------p~~~~y~~li~~~~~~g~~~ 647 (784)
+..++++.+.. |.+...+..+...+...|++++|.+.|+......+.. .+...|..+..+|.+.|+.+
T Consensus 226 ~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 226 LDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 55555554432 3333344444444444444444444444333321100 01344555555555555555
Q ss_pred HHHHHHH
Q 003946 648 DAEKALK 654 (784)
Q Consensus 648 ~A~~~~~ 654 (784)
+|..+++
T Consensus 304 ~A~~~~~ 310 (327)
T 3cv0_A 304 LVELTYA 310 (327)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 5555544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-13 Score=140.37 Aligned_cols=260 Identities=10% Similarity=0.043 Sum_probs=199.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003946 459 KAFLEAGKTKELTHFLIKAEKENLQVSHDD--AALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEA 536 (784)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 536 (784)
.-....|++.+|+..++..... .|+. .....+..+|...|+++.|...++. .-+|+..++..+...|...
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~----~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS----SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC----SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhcccC----CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 4455778999998888765432 3443 2445567899999999998876654 2356778888888999999
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHH
Q 003946 537 NRPREVTALLRDARSAGIQLD-ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAK 615 (784)
Q Consensus 537 g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 615 (784)
|+.++|.+.++++...+..|+ ...+..+...+...|++++|++.+++ |++...+..+...+.+.|++++|.+
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999987765564 55566666888899999999999886 5667888899999999999999999
Q ss_pred HHHHHHhcCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003946 616 LLQEVKEGQRIDCGVHD---WNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEM 692 (784)
Q Consensus 616 ~~~~~~~~~~~~p~~~~---y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m 692 (784)
.|+.+.+.. |+... ....+..+...|++++|..+|+++.+. .+.+...|+.+..++...| ++++|...+++.
T Consensus 152 ~l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g-~~~eA~~~l~~a 226 (291)
T 3mkr_A 152 ELKKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQG-RWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 999998764 44321 123344455568899999999999886 4457888888999999999 999999999998
Q ss_pred HhcccCCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhCCCCCCHHHHHH
Q 003946 693 KSFASSTSMNFDEELLDSVLYTFVRGGFFAR-ANEVVAMMEEGKMFIDKYKYRT 745 (784)
Q Consensus 693 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~pd~~~~~~ 745 (784)
.+.. +-++.++..++..+...|+.++ +.++++++.+ +.|+......
T Consensus 227 l~~~-----p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~d 273 (291)
T 3mkr_A 227 LDKD-----SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIKE 273 (291)
T ss_dssp HHHC-----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHhC-----CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHHH
Confidence 7732 2367888889999999999876 5788888887 3566654443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-12 Score=140.43 Aligned_cols=364 Identities=10% Similarity=0.008 Sum_probs=217.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 003946 286 ADSNLLIIMAHIYERNGRREELRKLQRHIDEA-----VNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEAR 360 (784)
Q Consensus 286 pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 360 (784)
.....|+.|...+...|++++|.+.|++..+. .........++|+.+..+|...|++++|...+++..+....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~-- 126 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK-- 126 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh--
Confidence 34577999999999999999999999886542 11111112237999999999999999999999988764320
Q ss_pred HHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003946 361 NSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELI 440 (784)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (784)
.
T Consensus 127 ------------~------------------------------------------------------------------- 127 (472)
T 4g1t_A 127 ------------F------------------------------------------------------------------- 127 (472)
T ss_dssp ------------S-------------------------------------------------------------------
T ss_pred ------------c-------------------------------------------------------------------
Confidence 0
Q ss_pred hhhcCCcCC-CHHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHH
Q 003946 441 TTEHGILQP-TEKIYIKLVKAFLEA--GKTKELTHFLIKAEKENLQVSHDDAALGHVITL---CISLGWLDQAHDLLDEM 514 (784)
Q Consensus 441 ~~~~~~~~p-~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~---~~~~g~~~~a~~~~~~m 514 (784)
.....+ ...+++.+..++... +++++|...|++..+.. +-+...+..+..+ +...++.++|.+.+++.
T Consensus 128 ---~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~---p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 128 ---SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK---PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201 (472)
T ss_dssp ---CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH
T ss_pred ---ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 000111 234555555555544 35778888888877665 3344444444433 33456667777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCC
Q 003946 515 HLAGVRASSSVYASLLKAYIEA----NRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIP 590 (784)
Q Consensus 515 ~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 590 (784)
.+.. +.+..++..+...+... |+.++|..++++..... +.+...+..+...|...|++++|+..+++..+..
T Consensus 202 l~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 277 (472)
T 4g1t_A 202 IRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-- 277 (472)
T ss_dssp HHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred hhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--
Confidence 7654 23555665555555443 56677888888776654 3456677778888888888888888888877754
Q ss_pred CCcHHHHHHHHHHHHhc-------------------CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003946 591 RSGHQEFEMLVKGCAQN-------------------HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEK 651 (784)
Q Consensus 591 ~~~~~~~~~ll~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~ 651 (784)
|.+..++..+...|... +..+.|...++...+..+. +...|..+...|...|++++|++
T Consensus 278 p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 278 PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN--LFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT--TCCCHHHHHHHHHHTTCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc--hhhhhhhHHHHHHHhccHHHHHH
Confidence 66666776666555332 2356677777777765543 33457778888888888888888
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHH-HHHHcCCCHHHHHHHHHHHHhcccCC-------------------CCCCCHHHHH
Q 003946 652 ALKRMRSLGHLPNAQ--TFHSMVT-GYAAIGGKYTEVTELWGEMKSFASST-------------------SMNFDEELLD 709 (784)
Q Consensus 652 ~~~~m~~~g~~p~~~--~~~~ll~-a~~~~g~~~~~a~~~~~~m~~~~~~~-------------------~~~p~~~~~~ 709 (784)
.|++..+....|... .+..+.. .....| ++++|+..+++..+..++. .-+.+..+|.
T Consensus 356 ~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 356 YFQKEFSKELTPVAKQLLHLRYGNFQLYQMK-CEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 888888753322211 1222222 223456 8888888887766532110 0122456777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHH
Q 003946 710 SVLYTFVRGGFFARANEVVAMMEEGK-MFIDKYKY 743 (784)
Q Consensus 710 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~~ 743 (784)
.|...|...|++++|.+.|++..+.| ..|+..+|
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 88888888888888888888877653 23544443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.4e-13 Score=133.70 Aligned_cols=251 Identities=7% Similarity=0.052 Sum_probs=152.0
Q ss_pred HhhhcCChhHHHHHHHhhhhCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhc
Q 003946 262 GCLLFETTRKAEQLLDIMPRIGVKADS--NLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKF 339 (784)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 339 (784)
-....|++..|+..++..... .|+. .....+..+|...|+++.|...++. ...+.. ..+..+...|...
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~----~a~~~la~~~~~~ 78 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPEL----QAVRMFAEYLASH 78 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHH----HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhH----HHHHHHHHHHcCC
Confidence 344567777777777665442 3443 3445566777777777777664433 122211 2466677777777
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHH
Q 003946 340 GDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALE 419 (784)
Q Consensus 340 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (784)
|+.++|++.++++...+
T Consensus 79 ~~~~~A~~~l~~ll~~~--------------------------------------------------------------- 95 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRS--------------------------------------------------------------- 95 (291)
T ss_dssp TTHHHHHHHHHHHHHSC---------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHhcc---------------------------------------------------------------
Confidence 77777777777766521
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 003946 420 AEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLC 498 (784)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~ 498 (784)
..| +...+..+...+.+.|++++|++.+++ +.+...+..+...+
T Consensus 96 ---------------------------~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 96 ---------------------------VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAMTVQIL 140 (291)
T ss_dssp ---------------------------CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHHHHHHH
T ss_pred ---------------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHHHHHHH
Confidence 123 344555566677777777777777765 13455566677777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 003946 499 ISLGWLDQAHDLLDEMHLAGVRASSSV---YASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTP 575 (784)
Q Consensus 499 ~~~g~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 575 (784)
.+.|++++|.+.|+.+.+.. |+... ...++..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|+++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWE 217 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHH
Confidence 77777777777777777653 33211 1122333334466777777777776653 346666777777777777777
Q ss_pred HHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHH-HHHHHHHHHhcC
Q 003946 576 GALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGL-MAKLLQEVKEGQ 624 (784)
Q Consensus 576 ~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~ 624 (784)
+|...|++..+.. |.+..++..++..+...|+.++ +.++++.+.+..
T Consensus 218 eA~~~l~~al~~~--p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 218 AAEGVLQEALDKD--SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 7777777766654 5666666666666666666644 456666666544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.9e-12 Score=135.97 Aligned_cols=366 Identities=12% Similarity=0.006 Sum_probs=182.5
Q ss_pred CCchhhHHHHHHHhhhcCChhHHHHHHHhhhhC-----C--CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 003946 250 KPNTNTFNIALAGCLLFETTRKAEQLLDIMPRI-----G--VKAD-SNLLIIMAHIYERNGRREELRKLQRHIDEA---- 317 (784)
Q Consensus 250 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-----g--~~pd-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---- 317 (784)
......||.+-..+...|++++|++.|++..+. + ..|+ ..+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334567999999999999999999999876532 1 1233 468999999999999999999999887653
Q ss_pred cC---CChhhHHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHH---HHHHHHHHhchhhhhhccCCCCCCCccccCCC
Q 003946 318 VN---LSDIQFRQFYNCLLSCHLKFG--DLNSASKMVLEMLQRAK---EARNSLAAAMLPFNAVGVNNRTPSEQNVNCTN 389 (784)
Q Consensus 318 ~~---~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (784)
.. +.... +++.+..++.+.| ++++|++.|++..+.+. ..+..+..+....+....
T Consensus 128 ~~~~~~~~~~---~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~-------------- 190 (472)
T 4g1t_A 128 SSPYRIESPE---LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP-------------- 190 (472)
T ss_dssp CCSSCCCCHH---HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC--------------
T ss_pred ccccchhhHH---HHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH--------------
Confidence 11 11121 5666666666654 68999999998877431 000000000000000000
Q ss_pred CccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHc----
Q 003946 390 SVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEA---- 464 (784)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---- 464 (784)
..........++. ..| +...+..+...+...
T Consensus 191 -------------------------~~~al~~~~~al~-------------------l~p~~~~~~~~l~~~~~~~~~~~ 226 (472)
T 4g1t_A 191 -------------------------SQNAIDPLRQAIR-------------------LNPDNQYLKVLLALKLHKMREEG 226 (472)
T ss_dssp -------------------------CCCTHHHHHHHHH-------------------HCSSCHHHHHHHHHHHHHCC---
T ss_pred -------------------------HHHHHHHHHHHhh-------------------cCCcchHHHHHHHHHHHHHHhhh
Confidence 0000000000000 122 444454444444433
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------
Q 003946 465 GKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEA-------- 536 (784)
Q Consensus 465 g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-------- 536 (784)
+++++|.+.+++..... +.+..++..+...|...|++++|...|++..+.. +-+..++..+...|...
T Consensus 227 ~~~~~a~~~~~~al~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~ 302 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKA---PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLR 302 (472)
T ss_dssp ---CHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHH
Confidence 34455666666655544 4445555556666666666666666666655543 22444555555544322
Q ss_pred -----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHH-HHHHHHH-H
Q 003946 537 -----------NRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQ-EFEMLVK-G 603 (784)
Q Consensus 537 -----------g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~ll~-~ 603 (784)
+..++|...|++..+.. ..+..++..+...|...|++++|+..|++..+....+.... .+..+.. .
T Consensus 303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~ 381 (472)
T 4g1t_A 303 ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381 (472)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 12344455555544432 12334455555555556666666666655554432111110 1111111 1
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHH
Q 003946 604 CAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYT 683 (784)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~ 683 (784)
..+.|+.++|...|++..+. .|+....... .+.+.+++++..+. -+.+..+|..+...|...| +++
T Consensus 382 ~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~---------~~~l~~~~~~~l~~-~p~~~~~~~~LG~~~~~~g-~~~ 447 (472)
T 4g1t_A 382 LYQMKCEDKAIHHFIEGVKI---NQKSREKEKM---------KDKLQKIAKMRLSK-NGADSEALHVLAFLQELNE-KMQ 447 (472)
T ss_dssp HHTSSCHHHHHHHHHHHHHS---CCCCHHHHHH---------HHHHHHHHHHHHHH-CC-CTTHHHHHHHHHHHHH-HCC
T ss_pred HHHCCCHHHHHHHHHHHHhc---CcccHHHHHH---------HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-CHH
Confidence 23445555666555555542 2333221111 12233334333332 1235678899999999999 999
Q ss_pred HHHHHHHHHHhc
Q 003946 684 EVTELWGEMKSF 695 (784)
Q Consensus 684 ~a~~~~~~m~~~ 695 (784)
+|.+.|++..+.
T Consensus 448 ~A~~~y~kALe~ 459 (472)
T 4g1t_A 448 QADEDSERGLES 459 (472)
T ss_dssp ------------
T ss_pred HHHHHHHHHHhc
Confidence 999999998874
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-11 Score=122.81 Aligned_cols=224 Identities=13% Similarity=0.062 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGV--RAS----SSV 525 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~ 525 (784)
..|..+...+...|++++|...|.+..+.. .+..++..+...+...|++++|...++...+... .++ ..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 456666667777777777777777766553 3445566667777777777777777776665321 111 456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA 605 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 605 (784)
+..+...|.+.|++++|...|++..+. .|+. ..+...|++++|+..++++.... |.+...+..+...+.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHH
Confidence 666667777777777777777776654 3442 23444456666666666665543 444445555555555
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHH
Q 003946 606 QNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEV 685 (784)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a 685 (784)
..|++++|...|+...+..+ .+...|..+...|...|++++|.+.+++..+.. +.+...|..+...+...| ++++|
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g-~~~~A 226 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVK-EYASA 226 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHh-hHHHH
Confidence 55555555555555554332 134445555555555555555555555555431 113444555555555555 55555
Q ss_pred HHHHHHHHh
Q 003946 686 TELWGEMKS 694 (784)
Q Consensus 686 ~~~~~~m~~ 694 (784)
...+++..+
T Consensus 227 ~~~~~~a~~ 235 (258)
T 3uq3_A 227 LETLDAART 235 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-11 Score=121.83 Aligned_cols=239 Identities=10% Similarity=-0.024 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCC----HHHH
Q 003946 488 DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGI--QLD----ASCY 561 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~t~ 561 (784)
...+..+...+...|++++|..+|++..+.. .+..++..+...|...|++++|...+++..+... .++ ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3467788899999999999999999999887 7889999999999999999999999999876421 122 5789
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 003946 562 EALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFC 641 (784)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~ 641 (784)
..+...+...|++++|+..|++..+.. |. ...+.+.|++++|.+.++.+....+ .+...|..+...|.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~--------~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT--------ADILTKLRNAEKELKKAEAEAYVNP--EKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC--------HHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch--------hHHHHHHhHHHHHHHHHHHHHHcCc--chHHHHHHHHHHHH
Confidence 999999999999999999999998864 33 2456777899999999999988542 24567899999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCCh
Q 003946 642 KKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFF 721 (784)
Q Consensus 642 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 721 (784)
..|++++|.+.+++..+.. +.+..+|..+...|...| ++++|...+++..+.. +.+...|..+...|.+.|++
T Consensus 151 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLM-SFPEAIADCNKAIEKD-----PNFVRAYIRKATAQIAVKEY 223 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCH
T ss_pred HhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999998853 336888999999999999 9999999999998732 23588899999999999999
Q ss_pred HHHHHHHHHHHhCC----CCCCHHHHHHHH
Q 003946 722 ARANEVVAMMEEGK----MFIDKYKYRTLF 747 (784)
Q Consensus 722 ~~A~~l~~~m~~~g----~~pd~~~~~~li 747 (784)
++|.+.+++..+.. ..|+......++
T Consensus 224 ~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 224 ASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 99999999988642 126665555444
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=9e-12 Score=120.25 Aligned_cols=199 Identities=13% Similarity=0.019 Sum_probs=118.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHH
Q 003946 521 ASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEML 600 (784)
Q Consensus 521 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 600 (784)
++...+..+...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|+..+++..+.. |.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence 344455555555666666666666666655442 2244555555556666666666666666655543 5555566666
Q ss_pred HHHHHhc-----------CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003946 601 VKGCAQN-----------HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFH 669 (784)
Q Consensus 601 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 669 (784)
...+... |++++|...|+...+.++- +...|..+...|...|++++|+..|++..+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 6666666 7777777777776664421 45567777777788888888888888777765 6677777
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 670 SMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 670 ~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
.+..+|...| ++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..
T Consensus 156 ~la~~~~~~g-~~~~A~~~~~~al~~~-----P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMG-RLDEALAQYAKALEQA-----PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777 8888888888776631 2256677777777888888888877776543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-11 Score=119.26 Aligned_cols=201 Identities=14% Similarity=0.041 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 4678888888999999999999999988776 5577788888888999999999999999888764 33677888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 531 KAYIEANRPREVTALLRDARSAGIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
..|...|++++|..+|+++.+.+..| +...+..+...+...|++++|+..+++..+.. |.+...+..+...+...|+
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCC
Confidence 88888899999999888887633344 45667777788888888888888888877754 5556677777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 610 AGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 610 ~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
+++|...++.+.+..+ .+...+..+...|...|+.++|.+.++++.+.
T Consensus 191 ~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGG--QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777777766432 34556667777777777777777777777664
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-11 Score=118.19 Aligned_cols=200 Identities=16% Similarity=0.081 Sum_probs=144.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 003946 285 KADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLA 364 (784)
Q Consensus 285 ~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 364 (784)
+++...+..+...+.+.|++++|...|+...+.++.+.. .|..+...+.+.|++++|+..|++..+.+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------- 69 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPE----ALYWLARTQLKLGLVNPALENGKTLVART-------- 69 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Confidence 456667777888888888888888888888776555544 58888888888888888888888777631
Q ss_pred HhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q 003946 365 AAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEH 444 (784)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (784)
T Consensus 70 -------------------------------------------------------------------------------- 69 (217)
T 2pl2_A 70 -------------------------------------------------------------------------------- 69 (217)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003946 445 GILQPTEKIYIKLVKAFLEA-----------GKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDE 513 (784)
Q Consensus 445 ~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 513 (784)
+.+...|..+...+... |++++|...|++..+.. +-+...+..+...+...|++++|...|++
T Consensus 70 ---P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 143 (217)
T 2pl2_A 70 ---PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQ 143 (217)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 22456677777777777 88999999998888776 55677788888888889999999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 003946 514 MHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMK 585 (784)
Q Consensus 514 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 585 (784)
..+.. .+...+..+..+|...|++++|...|++..+.. +.+...+..+...+...|+.++|+..|++..
T Consensus 144 al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 144 ALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88877 678888888888888899999988888887763 2356777888888888888888888887654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-11 Score=117.79 Aligned_cols=200 Identities=12% Similarity=-0.030 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 489 AALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSK 568 (784)
Q Consensus 489 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 568 (784)
..+..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.+.. ..+...|..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 445555555556666666666666655543 2245555555555666666666666665555442 12444555555555
Q ss_pred HHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003946 569 IVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQD 648 (784)
Q Consensus 569 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~ 648 (784)
...|++++|++.++++.+.+..|.+ ...|..+...|...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~------------------------------------~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPER------------------------------------SRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTH------------------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCccc------------------------------------HHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555442222322 3445556666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003946 649 AEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVV 728 (784)
Q Consensus 649 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 728 (784)
|.+.+++..+.. ..+...+..+...+...| ++++|...++++.+. .+.+...+..+...+.+.|++++|.+.+
T Consensus 160 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 232 (252)
T 2ho1_A 160 AKEYFEKSLRLN-RNQPSVALEMADLLYKER-EYVPARQYYDLFAQG-----GGQNARSLLLGIRLAKVFEDRDTAASYG 232 (252)
T ss_dssp HHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT-----SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcC-cccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 666666665532 123555666666666666 666666666666541 2234555666666666666666666666
Q ss_pred HHHHh
Q 003946 729 AMMEE 733 (784)
Q Consensus 729 ~~m~~ 733 (784)
+++.+
T Consensus 233 ~~~~~ 237 (252)
T 2ho1_A 233 LQLKR 237 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.2e-11 Score=114.33 Aligned_cols=202 Identities=12% Similarity=-0.011 Sum_probs=140.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+...+...|++++|...|.++.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD---PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 45677778888888888888888888887765 4566777778888888888888888888877764 3366777778
Q ss_pred HHHHHHc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 530 LKAYIEA-NRPREVTALLRDARSAGIQLD-ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 530 i~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
...|... |++++|...++++.+.+..|+ ...|..+...+...|++++|+..++++.+.. |.+...+..+...+...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHc
Confidence 8888888 888888888888776322333 4567777777777777777777777776654 55556666666666666
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 608 HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
|++++|...++...+..+ ..+...+..+...+...|+.++|..+++.+.+
T Consensus 161 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVE-VLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp TCHHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666666666655331 02344555666666666666666666666654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-10 Score=113.04 Aligned_cols=211 Identities=12% Similarity=-0.030 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 489 AALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSK 568 (784)
Q Consensus 489 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 568 (784)
.++..+...+...|++++|...|+.+.+.. +.+...+..+...|...|++++|...+++..+.. ..+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344445555555555555555555555442 2234455555555555555555555555554432 12344444444455
Q ss_pred HHc-CChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003946 569 IVQ-KDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 569 ~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
... |++++|+..++++.+.+..|. +...|..+...|...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPT------------------------------------PYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSC------------------------------------HHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcc------------------------------------hHHHHHHHHHHHHHcCCHH
Confidence 555 555555555554444211122 2445666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003946 648 DAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEV 727 (784)
Q Consensus 648 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 727 (784)
+|++.++++.+.. +.+...+..+...+...| ++++|...++++.+..+ ..+...+..+...+...|+.++|..+
T Consensus 131 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~ 204 (225)
T 2vq2_A 131 LAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG-QLGDADYYFKKYQSRVE----VLQADDLLLGWKIAKALGNAQAAYEY 204 (225)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 6666666666531 123556666666666666 77777776666655211 13455566666666666777777666
Q ss_pred HHHHHhCCCCCCHHHHHH
Q 003946 728 VAMMEEGKMFIDKYKYRT 745 (784)
Q Consensus 728 ~~~m~~~g~~pd~~~~~~ 745 (784)
++.+.+. .|+......
T Consensus 205 ~~~~~~~--~p~~~~~~~ 220 (225)
T 2vq2_A 205 EAQLQAN--FPYSEELQT 220 (225)
T ss_dssp HHHHHHH--CTTCHHHHH
T ss_pred HHHHHHh--CCCCHHHHH
Confidence 6666542 355444433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-11 Score=123.16 Aligned_cols=85 Identities=13% Similarity=0.030 Sum_probs=36.1
Q ss_pred cCChhHHHHHHHhhhhCCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCCh
Q 003946 266 FETTRKAEQLLDIMPRIGVK--A-DSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDL 342 (784)
Q Consensus 266 ~g~~~~A~~l~~~m~~~g~~--p-d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 342 (784)
.|++++|+..|+.+.+.... | +..++..+...|...|++++|...|+...+..+.... +|..+...|.+.|++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE----VFNYLGIYLTQAGNF 93 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHHccCH
Confidence 34455555555554443210 0 1233444444444444444444444444443222222 244444444444444
Q ss_pred hHHHHHHHHHHH
Q 003946 343 NSASKMVLEMLQ 354 (784)
Q Consensus 343 ~~A~~~~~~m~~ 354 (784)
++|.+.|++..+
T Consensus 94 ~~A~~~~~~al~ 105 (275)
T 1xnf_A 94 DAAYEAFDSVLE 105 (275)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 444444444433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=5e-11 Score=117.15 Aligned_cols=98 Identities=14% Similarity=0.000 Sum_probs=40.4
Q ss_pred chhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 003946 252 NTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNC 331 (784)
Q Consensus 252 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 331 (784)
...+|..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|.+.++.+.+..+.... ++..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~ 96 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAAT----AYYG 96 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchH----HHHH
Confidence 34455555555666666666666666665532 223445555555555555555555555555544322222 3555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 003946 332 LLSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~ 354 (784)
+...|.+.|++++|.+.|++..+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~ 119 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALR 119 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555555555544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.6e-11 Score=116.82 Aligned_cols=203 Identities=14% Similarity=0.072 Sum_probs=152.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
......|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+...+.. +.+..++.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN---KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp ----------------------CCTTHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 3456788888999999999999999999998865 5678888889999999999999999999998874 34788899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
.+...|...|++++|...++++.+.. ..+...+..+...+...|++++|+..++++.+.. |.+...+..+...+...
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHc
Confidence 99999999999999999999998764 3467888889999999999999999999988765 66677888888888888
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 608 HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
|++++|.+.|+......+ .+..+|..+...|...|++++|.+.+++..+.
T Consensus 173 ~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDP--GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp TCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 888888888888877543 24667888888888888888888888888774
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.8e-11 Score=128.20 Aligned_cols=283 Identities=11% Similarity=-0.019 Sum_probs=218.5
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C
Q 003946 447 LQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD----DAALGHVITLCISLGWLDQAHDLLDEMHLA----G 518 (784)
Q Consensus 447 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g 518 (784)
..+....+......+...|++++|...|++..+.. +.+ ..++..+...+...|++++|...+++..+. +
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 81 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 81 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Confidence 35567778888899999999999999999998875 334 356778889999999999999999987643 2
Q ss_pred CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC-------------------
Q 003946 519 VRA-SSSVYASLLKAYIEANRPREVTALLRDARSAGI-QLD----ASCYEALLQSKIVQKD------------------- 573 (784)
Q Consensus 519 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~------------------- 573 (784)
-.| ...++..+...|...|++++|...+++..+... .++ ..++..+...|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 111 256788899999999999999999998764310 122 4478888889999999
Q ss_pred -hhHHHHHHHHhHhc----CCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcC
Q 003946 574 -TPGALHLFKEMKES----KIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG----VHDWNNVIHFFCKKR 644 (784)
Q Consensus 574 -~~~A~~~~~~m~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g 644 (784)
+++|+..+++..+. +..+....++..+...+...|++++|.+.++...+...-.++ ..+|..+...|...|
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 99999998876542 222333457888899999999999999999887654322222 347889999999999
Q ss_pred CHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhc
Q 003946 645 LMQDAEKALKRMRSL----GHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD-EELLDSVLYTFVRG 718 (784)
Q Consensus 645 ~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~li~~~~~~ 718 (784)
++++|...+++..+. +..+. ..++..+...|...| ++++|...+++..+.....+-.+. ..++..+...|...
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 999999999988753 11111 557788888999999 999999999998775433322221 55788999999999
Q ss_pred CChHHHHHHHHHHHh
Q 003946 719 GFFARANEVVAMMEE 733 (784)
Q Consensus 719 g~~~~A~~l~~~m~~ 733 (784)
|++++|.+.+++..+
T Consensus 321 g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 321 GNHDQAMHFAEKHLE 335 (406)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-10 Score=116.80 Aligned_cols=245 Identities=8% Similarity=-0.063 Sum_probs=157.7
Q ss_pred HHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 003946 256 FNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSC 335 (784)
Q Consensus 256 ~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~ 335 (784)
+......+.+.|++++|+..|+...+.. +.+...+..+...|.+.|++++|...++...+. ..+......+|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHH
Confidence 3444556667788888888888877653 223346777777788888888888888777763 22211111146777777
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhh
Q 003946 336 HLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKF 415 (784)
Q Consensus 336 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (784)
|.+.|++++|.+.|++..+.+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~----------------------------------------------------------- 104 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD----------------------------------------------------------- 104 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-----------------------------------------------------------
T ss_pred HHHcccHHHHHHHHHHHHhcC-----------------------------------------------------------
Confidence 888888888888887776631
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 003946 416 VALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVI 495 (784)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li 495 (784)
+.+..+|..+...|...|++++|...|++..+.. +.+..++..+.
T Consensus 105 --------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~ 149 (272)
T 3u4t_A 105 --------------------------------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTDPKVFYELG 149 (272)
T ss_dssp --------------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCCHHHHHHHH
T ss_pred --------------------------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCcHHHHHHHH
Confidence 2234567777777888888888888887776654 44555566555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcC-CCCC------HHHHHHHH
Q 003946 496 TLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANR---PREVTALLRDARSAG-IQLD------ASCYEALL 565 (784)
Q Consensus 496 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~t~~~li 565 (784)
..+...+++++|...|+...+.. +.+...+..+...+...|+ .++|...+++..+.. -.|+ ...|..+.
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 24444557888888887777653 2346666677777777777 666777777665431 0122 24566666
Q ss_pred HHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHH
Q 003946 566 QSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEM 599 (784)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 599 (784)
..|...|++++|++.|++..+.. |.+......
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~ 260 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILALD--PTNKKAIDG 260 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--ccHHHHHHH
Confidence 67777777777777777776654 555533333
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-11 Score=121.10 Aligned_cols=199 Identities=10% Similarity=-0.041 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
..+|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+...+.. +.+..++..+.
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la 118 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHH
Confidence 3566667777777777777777777776665 4456667777777777777777777777776653 22456666777
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcH
Q 003946 531 KAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEA 610 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~ 610 (784)
..|.+.|++++|...|+++.+. .|+.......+..+...|++++|+..+++..... |++...+. ++..+...++.
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~ 193 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISE 193 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHHH-HHHHHHHhcCH
Confidence 7777777777777777777654 3444344444444455566777777776655543 22222232 44444555555
Q ss_pred HHHHHHHHHHHhcCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 611 GLMAKLLQEVKEGQRI-DC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 611 ~~a~~~~~~~~~~~~~-~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
++|.+.++......+. .| +...|..+...|.+.|++++|...|++..+
T Consensus 194 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5666655555432110 00 134555566666666666666666666655
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-10 Score=119.56 Aligned_cols=150 Identities=10% Similarity=0.044 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|+.+..++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|...|+.+++... -+...|+.+
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~l 240 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQR 240 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 33455555555555555555555555555544 34444555555555555555555555555555432 244555555
Q ss_pred HHHHHH-cCChHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHhHhcCCCCCcHHHHHHHH
Q 003946 530 LKAYIE-ANRPREV-----TALLRDARSAGIQLDASCYEALLQSKIVQK--DTPGALHLFKEMKESKIPRSGHQEFEMLV 601 (784)
Q Consensus 530 i~~~~~-~g~~~~A-----~~~~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~ll 601 (784)
..+|.+ .|..++| +..|++..+.. .-+...|+.+...+...| +.++|++.+.++ + ..|++...+..+.
T Consensus 241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La 316 (382)
T 2h6f_A 241 YFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLV 316 (382)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHH
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHH
Confidence 555555 3333444 34455544432 123445555555555544 355555555554 2 2244444555555
Q ss_pred HHHHhc
Q 003946 602 KGCAQN 607 (784)
Q Consensus 602 ~~~~~~ 607 (784)
..|.+.
T Consensus 317 ~~~~~~ 322 (382)
T 2h6f_A 317 DIYEDM 322 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-11 Score=131.00 Aligned_cols=279 Identities=13% Similarity=-0.019 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCC
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDD----AALGHVITLCISLGWLDQAHDLLDEMHLA----G-VRAS 522 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~~~ 522 (784)
..+..+...+...|++++|...|+++.+.. +.+. .++..+...|...|++++|...|++..+. + ....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG---TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 455667778899999999999999998876 3343 46888889999999999999999987753 1 1224
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCC-----------------hhHHHHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSA----GI-QLDASCYEALLQSKIVQKD-----------------TPGALHL 580 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~li~~~~~~g~-----------------~~~A~~~ 580 (784)
..++..+...|...|++++|...+++..+. +- .....++..+...|...|+ +++|++.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 567888999999999999999999987543 11 1134578888889999999 9999999
Q ss_pred HHHhHhc----CCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 003946 581 FKEMKES----KIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG----VHDWNNVIHFFCKKRLMQDAEKA 652 (784)
Q Consensus 581 ~~~m~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~ 652 (784)
+++..+. +..+....++..+...+...|++++|.+.++...+...-.++ ...|..+...|...|++++|.+.
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 8876542 222333457888899999999999999999887654321122 33788999999999999999999
Q ss_pred HHHHHhCCCC-C----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 003946 653 LKRMRSLGHL-P----NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DEELLDSVLYTFVRGGFFARANE 726 (784)
Q Consensus 653 ~~~m~~~g~~-p----~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 726 (784)
+++..+..-. . ...++..+...|...| ++++|...+++..+.....+..+ ....+..+...|.+.|++++|.+
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLH-EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 9988763110 1 1467778888999999 99999999999876433322111 24578889999999999999999
Q ss_pred HHHHHHhC
Q 003946 727 VVAMMEEG 734 (784)
Q Consensus 727 l~~~m~~~ 734 (784)
.+++..+.
T Consensus 365 ~~~~al~~ 372 (411)
T 4a1s_A 365 YAEQHLQL 372 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-10 Score=120.23 Aligned_cols=249 Identities=11% Similarity=0.018 Sum_probs=204.4
Q ss_pred hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhhcCCChhhHHHHHHH
Q 003946 253 TNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGR-REELRKLQRHIDEAVNLSDIQFRQFYNC 331 (784)
Q Consensus 253 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~-~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 331 (784)
...|+.+-..+.+.|++++|+..++..++.. +-+..+|..+..++.+.|+ +++|...|++..+.++.+.. +|+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~----a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ----VWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH----HHHH
Confidence 4468888888899999999999999999854 2345788999999999997 99999999999997666555 6999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhh
Q 003946 332 LLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTK 411 (784)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (784)
+..+|.+.|++++|+..|++..+.+
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ld------------------------------------------------------- 196 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQD------------------------------------------------------- 196 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC-------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-------------------------------------------------------
Confidence 9999999999999999999998732
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHH
Q 003946 412 DRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAAL 491 (784)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~ 491 (784)
.-+...|..+..++.+.|++++|+..|+++.+.. +-+...|
T Consensus 197 ------------------------------------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~ 237 (382)
T 2h6f_A 197 ------------------------------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVW 237 (382)
T ss_dssp ------------------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHH
T ss_pred ------------------------------------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHH
Confidence 3367899999999999999999999999999987 6678889
Q ss_pred HHHHHHHHH-cCCHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 492 GHVITLCIS-LGWLDQA-----HDLLDEMHLAGVRASSSVYASLLKAYIEAN--RPREVTALLRDARSAGIQLDASCYEA 563 (784)
Q Consensus 492 ~~li~~~~~-~g~~~~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ 563 (784)
+.+..++.+ .|..++| ...|+...+.. +-+...|+.+...|.+.| ++++|...+.++ +.. ..+...+..
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~ 314 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAF 314 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHH
Confidence 999999999 6665777 58888888765 336889999999999988 689999999988 332 446778889
Q ss_pred HHHHHHHcC---------ChhHHHHHHHHh-HhcCCCCCcHHHHHHHHHHHH
Q 003946 564 LLQSKIVQK---------DTPGALHLFKEM-KESKIPRSGHQEFEMLVKGCA 605 (784)
Q Consensus 564 li~~~~~~g---------~~~~A~~~~~~m-~~~~~~~~~~~~~~~ll~~~~ 605 (784)
+...|.+.| ..++|+++++++ .+.. |.....|..+...+.
T Consensus 315 La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D--P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 315 LVDIYEDMLENQCDNKEDILNKALELCEILAKEKD--TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHH
Confidence 999998864 258899999998 5543 665666666655443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.4e-11 Score=117.52 Aligned_cols=232 Identities=9% Similarity=-0.002 Sum_probs=137.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRA--SSSVYASLLK 531 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~ 531 (784)
+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+..-.| ....|..+..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3445566777788888888888777665 3344456667777777788888888877777633112 1334677777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHH
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 611 (784)
.|...|++++|...|++..+.. +.+...|..+...|...|++++|+..|++..+.. |.+...+..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776653 2245667777777777777777777777766542 555555555552333334566
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHHcCCC
Q 003946 612 LMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRL---MQDAEKALKRMRSLG-HLPN------AQTFHSMVTGYAAIGGK 681 (784)
Q Consensus 612 ~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~ll~a~~~~g~~ 681 (784)
+|.+.|+...+..+ .+...|..+...+...|+ .++|...+++..+.. -.|+ ..+|..+...|...| +
T Consensus 160 ~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 236 (272)
T 3u4t_A 160 KADSSFVKVLELKP--NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR-D 236 (272)
T ss_dssp HHHHHHHHHHHHST--TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHhCc--cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC-C
Confidence 66666665555432 123444555555555555 455555555544321 0122 134444555555555 5
Q ss_pred HHHHHHHHHHHHh
Q 003946 682 YTEVTELWGEMKS 694 (784)
Q Consensus 682 ~~~a~~~~~~m~~ 694 (784)
+++|...+++..+
T Consensus 237 ~~~A~~~~~~al~ 249 (272)
T 3u4t_A 237 KVKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-09 Score=108.44 Aligned_cols=222 Identities=10% Similarity=-0.007 Sum_probs=163.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCIS----LGWLDQAHDLLDEMHLAGVRASSSV 525 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~ 525 (784)
++.++..+...+...|++++|...|.+..+.+ +...+..+...|.. .+++++|...|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 45677777788888888888888888887644 34556677778888 888888888888888775 6778
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHhHhcCCCCCcHHHH
Q 003946 526 YASLLKAYIE----ANRPREVTALLRDARSAGIQLDASCYEALLQSKIV----QKDTPGALHLFKEMKESKIPRSGHQEF 597 (784)
Q Consensus 526 ~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 597 (784)
+..+...|.. .+++++|...|++..+.+ +...+..+-..|.. .++.++|+..|++..+.+ +...+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~ 149 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGC 149 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHH
Confidence 8888888888 888888888888887754 66777778778887 788888888888877755 24466
Q ss_pred HHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003946 598 EMLVKGCAQ----NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCK----KRLMQDAEKALKRMRSLGHLPNAQTFH 669 (784)
Q Consensus 598 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 669 (784)
..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 222 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF 222 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHH
Confidence 666666666 777777777777776543 34566667777777 777777777777777653 255556
Q ss_pred HHHHHHHH----cCCCHHHHHHHHHHHHh
Q 003946 670 SMVTGYAA----IGGKYTEVTELWGEMKS 694 (784)
Q Consensus 670 ~ll~a~~~----~g~~~~~a~~~~~~m~~ 694 (784)
.+...|.. .+ ++++|...+++..+
T Consensus 223 ~l~~~~~~g~~~~~-~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 223 NLGAMQYNGEGVTR-NEKQAIENFKKGCK 250 (273)
T ss_dssp HHHHHHHTTSSSSC-CSTTHHHHHHHHHH
T ss_pred HHHHHHHcCCCccc-CHHHHHHHHHHHHH
Confidence 66666666 66 77777777776665
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-09 Score=108.50 Aligned_cols=224 Identities=9% Similarity=-0.033 Sum_probs=195.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 487 DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE----ANRPREVTALLRDARSAGIQLDASCYE 562 (784)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 562 (784)
+..++..+...+...|++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55667788888999999999999999999843 67788889999999 999999999999998875 788888
Q ss_pred HHHHHHHH----cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCCCHHHHH
Q 003946 563 ALLQSKIV----QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ----NHEAGLMAKLLQEVKEGQRIDCGVHDWN 634 (784)
Q Consensus 563 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~y~ 634 (784)
.+-..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|+...+.+ +...+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~ 150 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCT 150 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHH
Confidence 99999999 999999999999998865 46788999999999 999999999999998754 566788
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhcccCCCCCCCHH
Q 003946 635 NVIHFFCK----KRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA----IGGKYTEVTELWGEMKSFASSTSMNFDEE 706 (784)
Q Consensus 635 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~~~~~a~~~~~~m~~~~~~~~~~p~~~ 706 (784)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+ ++++|...+++..+. . +..
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~------~-~~~ 219 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATK-NFKEALARYSKACEL------E-NGG 219 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCC-CHHHHHHHHHHHHHT------T-CHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHHhC------C-CHH
Confidence 88888988 999999999999999874 56778888888888 88 999999999998872 2 367
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 003946 707 LLDSVLYTFVR----GGFFARANEVVAMMEEGK 735 (784)
Q Consensus 707 ~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 735 (784)
.+..+...|.. .+++++|.+.+++..+.|
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 78889999998 999999999999998864
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-10 Score=126.46 Aligned_cols=378 Identities=14% Similarity=0.033 Sum_probs=236.3
Q ss_pred HHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHH---HHhhhhhccCCcCcccccccccc
Q 003946 171 LSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELI---LEIGYLFQDGRVDPRKKCNAPLI 247 (784)
Q Consensus 171 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~---~~a~~~~~~~~m~~~~~~~~~~~ 247 (784)
+...+.+.|++++|.+.|++..+.|. ...+..|-..|... |.. ++|...|+ +..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~--------g~~~d~~~A~~~~~--~A~---------- 65 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGT--------RDPAQIKQAEATYR--AAA---------- 65 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC-------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcc--------CCCCCHHHHHHHHH--HHH----------
Confidence 44455667777888888887776652 22222222223222 445 77877777 442
Q ss_pred CCCCchhhHHHHHHHhhhcC-----ChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHH---HHHHHhhcC
Q 003946 248 AMKPNTNTFNIALAGCLLFE-----TTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKL---QRHIDEAVN 319 (784)
Q Consensus 248 ~~~p~~~~~~~ll~~~~~~g-----~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l---~~~~~~~~~ 319 (784)
..+...+..+-..+...+ ++++|+..|+...+.|. + ..+..|...|...+..+.+.+. +......+.
T Consensus 66 --~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~ 140 (452)
T 3e4b_A 66 --DTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY 140 (452)
T ss_dssp -------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC
T ss_pred --hCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC
Confidence 114444555555343333 77889999988888662 2 3666777777776655444333 333333333
Q ss_pred CChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccc
Q 003946 320 LSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGII 399 (784)
Q Consensus 320 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (784)
+. .+..|...|...+.++++......+...-
T Consensus 141 ~~------a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a------------------------------------------- 171 (452)
T 3e4b_A 141 PE------AGLAQVLLYRTQGTYDQHLDDVERICKAA------------------------------------------- 171 (452)
T ss_dssp TT------HHHHHHHHHHHHTCGGGGHHHHHHHHHHH-------------------------------------------
T ss_pred HH------HHHHHHHHHHcCCCcccCHHHHHHHHHHH-------------------------------------------
Confidence 32 47788888888887777776655444321
Q ss_pred cccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcC---ChHHHHHHHHH
Q 003946 400 ENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAG---KTKELTHFLIK 476 (784)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~ 476 (784)
...++..+..|...|.+.| +.++|++.|.+
T Consensus 172 -----------------------------------------------~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~ 204 (452)
T 3e4b_A 172 -----------------------------------------------LNTTDICYVELATVYQKKQQPEQQAELLKQMEA 204 (452)
T ss_dssp -----------------------------------------------TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------------------------------------HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 1222237778888888899 89999999999
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHH
Q 003946 477 AEKENLQVSHDDAALGHVITLCISL----GWLDQAHDLLDEMHLAGVRASSSVYASLLKA-Y--IEANRPREVTALLRDA 549 (784)
Q Consensus 477 m~~~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m 549 (784)
....| .++...+..+...|... +++++|...|+... .| +...+..|... | ...+++++|...|++.
T Consensus 205 aa~~g---~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A 277 (452)
T 3e4b_A 205 GVSRG---TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNG 277 (452)
T ss_dssp HHHTT---CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 99888 67776656677777554 68999999999988 44 56677777766 4 4688999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh----cCcHHHHHHHHHHH
Q 003946 550 RSAGIQLDASCYEALLQSKIVQK-----DTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ----NHEAGLMAKLLQEV 620 (784)
Q Consensus 550 ~~~g~~p~~~t~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~ 620 (784)
.+.| +...+..|-..|. .| +.++|+..|++.. +.+...+..|...|.. ..++++|..+|+..
T Consensus 278 a~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 348 (452)
T 3e4b_A 278 RAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA 348 (452)
T ss_dssp HHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 8866 6677777777776 45 8999999998876 3346677777777766 34889999999988
Q ss_pred HhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 621 KEGQRIDCGVHDWNNVIHFFCK----KRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 621 ~~~~~~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
.+.+ +......|...|.. ..+.++|...|+...+.|. |+.......+....... +.++|..+.++..+
T Consensus 349 a~~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~-~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 349 ARNG----QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPA-QRAEGQRLVQQELA 420 (452)
T ss_dssp HTTT----CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHH
T ss_pred HhhC----hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHH
Confidence 8754 33456667777664 4588899999998888763 22222222222222233 45566666665444
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-11 Score=124.82 Aligned_cols=279 Identities=12% Similarity=-0.009 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CC
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD----DAALGHVITLCISLGWLDQAHDLLDEMHLA----GVR-AS 522 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~ 522 (784)
..+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +.. ..
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 345566778889999999999999998875 334 356788889999999999999999987643 211 12
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------hhHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGI-QLD----ASCYEALLQSKIVQKD--------------------TPGA 577 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~--------------------~~~A 577 (784)
..++..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 56788899999999999999999998754210 123 3478888889999999 9999
Q ss_pred HHHHHHhHhc----CCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 003946 578 LHLFKEMKES----KIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG----VHDWNNVIHFFCKKRLMQDA 649 (784)
Q Consensus 578 ~~~~~~m~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A 649 (784)
+..+++.... +..+.....+..+...+...|++++|.+.++...+.....++ ..++..+...|...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9998876542 222333457888889999999999999999887653221122 34788999999999999999
Q ss_pred HHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcCChHH
Q 003946 650 EKALKRMRSLGH-LPN----AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DEELLDSVLYTFVRGGFFAR 723 (784)
Q Consensus 650 ~~~~~~m~~~g~-~p~----~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 723 (784)
.+.+++..+..- .++ ..++..+...+...| ++++|...+++..+.....+-.+ ...++..+...|.+.|++++
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 999998875310 112 557778888999999 99999999998876433222111 24578889999999999999
Q ss_pred HHHHHHHHHhC
Q 003946 724 ANEVVAMMEEG 734 (784)
Q Consensus 724 A~~l~~~m~~~ 734 (784)
|.+.+++..+.
T Consensus 322 A~~~~~~a~~~ 332 (338)
T 3ro2_A 322 AMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999998864
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.8e-11 Score=126.20 Aligned_cols=212 Identities=16% Similarity=0.025 Sum_probs=125.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchh
Q 003946 290 LLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLP 369 (784)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 369 (784)
.+..+...+...|++++|...|++..+..+.+......+|..+...|...|++++|...|++..+....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----------- 118 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS----------- 118 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------
Confidence 344455667777777777777777776544333211125777777788888888888887777653210
Q ss_pred hhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC
Q 003946 370 FNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP 449 (784)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 449 (784)
.+....
T Consensus 119 --------------------------------------------------------------------------~~~~~~ 124 (411)
T 4a1s_A 119 --------------------------------------------------------------------------MNDRLG 124 (411)
T ss_dssp --------------------------------------------------------------------------TTCHHH
T ss_pred --------------------------------------------------------------------------ccCchH
Confidence 000011
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCCCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENL---QVSHDDAALGHVITLCISLGW-----------------LDQAHD 509 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~p~~~~~~~li~~~~~~g~-----------------~~~a~~ 509 (784)
...+|..+...|...|++++|...+.+...... ..+....++..+...|...|+ +++|..
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 225667777777888888888888777654310 002223456666777777777 777777
Q ss_pred HHHHHHHc----CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCChhHHHH
Q 003946 510 LLDEMHLA----GVR-ASSSVYASLLKAYIEANRPREVTALLRDARSAGI-QLD----ASCYEALLQSKIVQKDTPGALH 579 (784)
Q Consensus 510 ~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~ 579 (784)
.+++..+. +-. ....++..+...|...|++++|...+++..+... .++ ...+..+...|...|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 77665432 111 1234666677777777777777777776643210 011 1255666666666677777766
Q ss_pred HHHHhHh
Q 003946 580 LFKEMKE 586 (784)
Q Consensus 580 ~~~~m~~ 586 (784)
.+++...
T Consensus 285 ~~~~al~ 291 (411)
T 4a1s_A 285 HYKRTLA 291 (411)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-10 Score=122.28 Aligned_cols=311 Identities=11% Similarity=0.023 Sum_probs=197.6
Q ss_pred CCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--cCCCh
Q 003946 250 KPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKAD-----SNLLIIMAHIYERNGRREELRKLQRHIDEA--VNLSD 322 (784)
Q Consensus 250 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~--~~~~~ 322 (784)
.+....+...-..+.+.|++++|+..|+...+.+ |+ ..++..+...|...|++++|...+++.... ...+.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 4556677778888899999999999999998864 43 257888899999999999999999986554 11222
Q ss_pred hhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccccc
Q 003946 323 IQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENH 402 (784)
Q Consensus 323 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (784)
.....++..+...|...|++++|...|++..+.....
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------------------- 120 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL------------------------------------------- 120 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-------------------------------------------
Confidence 2222368899999999999999999999887743200
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCC----------------
Q 003946 403 ILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGK---------------- 466 (784)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---------------- 466 (784)
........++..+...|...|+
T Consensus 121 ------------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 121 ------------------------------------------NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp ------------------------------------------TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred ------------------------------------------ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 0000112477788888888888
Q ss_pred ----hHHHHHHHHHHHHcCC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHH
Q 003946 467 ----TKELTHFLIKAEKENL---QVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGV-RAS----SSVYASLLKAYI 534 (784)
Q Consensus 467 ----~~~a~~~~~~m~~~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~ 534 (784)
+++|...+.+...... ..+....++..+...|...|++++|...+++..+... .++ ..++..+...|.
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 8888888877653210 0111234566777778888888888888887764310 112 236667777777
Q ss_pred HcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 535 EANRPREVTALLRDARSAGI-QLD----ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
..|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+......+
T Consensus 239 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------------- 302 (406)
T 3sf4_A 239 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND---------------- 302 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------
T ss_pred HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC----------------
Confidence 78888888777777643210 011 345556666666666666666666655432100000
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcC
Q 003946 610 AGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL----GHLP-NAQTFHSMVTGYAAIG 679 (784)
Q Consensus 610 ~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~a~~~~g 679 (784)
......++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|
T Consensus 303 ----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 303 ----------------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 0001345666666666677777777666665432 1111 1344555555666655
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-10 Score=118.92 Aligned_cols=286 Identities=13% Similarity=0.026 Sum_probs=171.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchh
Q 003946 290 LLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLP 369 (784)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 369 (784)
.+......+.+.|++++|...|++..+..+.+......++..+...|...|++++|.+.+++..+....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------- 75 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART----------- 75 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----------
Confidence 344556677888888888888888877644443221226888889999999999999999887763210
Q ss_pred hhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC
Q 003946 370 FNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP 449 (784)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 449 (784)
.+....
T Consensus 76 --------------------------------------------------------------------------~~~~~~ 81 (338)
T 3ro2_A 76 --------------------------------------------------------------------------IGDQLG 81 (338)
T ss_dssp --------------------------------------------------------------------------HTCHHH
T ss_pred --------------------------------------------------------------------------ccccHH
Confidence 000011
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHcCC--------------------HH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD----DAALGHVITLCISLGW--------------------LD 505 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~----~~~~~~li~~~~~~g~--------------------~~ 505 (784)
...++..+...+...|++++|...+.+..+... -.++ ..++..+...+...|+ ++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR-ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence 235777888889999999999999988765321 0122 3367777788888888 88
Q ss_pred HHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCChh
Q 003946 506 QAHDLLDEMHLA----GVR-ASSSVYASLLKAYIEANRPREVTALLRDARSAGI-QLD----ASCYEALLQSKIVQKDTP 575 (784)
Q Consensus 506 ~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~ 575 (784)
+|...+++..+. +.. ....++..+...|...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 240 (338)
T 3ro2_A 161 AAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Confidence 888888776532 111 1234666777777888888888888877643210 011 225666666666677777
Q ss_pred HHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003946 576 GALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKR 655 (784)
Q Consensus 576 ~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 655 (784)
+|...+++..+......+. .....++..+...|...|++++|.+.+++
T Consensus 241 ~A~~~~~~al~~~~~~~~~--------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 241 TASEYYKKTLLLARQLKDR--------------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCH--------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcch--------------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7776666654321000000 00123455555555555555555555555
Q ss_pred HHhC----CCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 656 MRSL----GHLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 656 m~~~----g~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
..+. +-.+ ...++..+...|...| ++++|...+++..+
T Consensus 289 a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 289 HLAIAQELKDRIGEGRACWSLGNAYTALG-NHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHH
Confidence 4432 1000 1234445555555666 66666666665554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.6e-09 Score=106.68 Aligned_cols=203 Identities=13% Similarity=0.077 Sum_probs=127.0
Q ss_pred CCCHHHHHHHHHHHH-------HcCCh-------HHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003946 448 QPTEKIYIKLVKAFL-------EAGKT-------KELTHFLIKAEKE-NLQVSHDDAALGHVITLCISLGWLDQAHDLLD 512 (784)
Q Consensus 448 ~p~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~m~~~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 512 (784)
+-++..|..+...+. +.|++ ++|..+|++..+. . +-+...|..+...+.+.|++++|..+|+
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 123 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL---KKNMLLYFAYADYEESRMKYEKVHSIYN 123 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT---TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 335667777777665 35775 8888889888873 3 3455678888888888888888888888
Q ss_pred HHHHcCCCCC-HH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHhHhcCC
Q 003946 513 EMHLAGVRAS-SS-VYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKI-VQKDTPGALHLFKEMKESKI 589 (784)
Q Consensus 513 ~m~~~g~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~A~~~~~~m~~~~~ 589 (784)
...+. .|+ .. +|..+...+.+.|++++|..+|++..+... ++...|........ ..|+.++|..+|++..+..
T Consensus 124 ~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~- 199 (308)
T 2ond_A 124 RLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY- 199 (308)
T ss_dssp HHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-
T ss_pred HHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 88874 343 33 788888888888888888888888876532 23344433322221 2577777777777766543
Q ss_pred CCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 590 PRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC--GVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 590 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
|.+...|..++..+.+.|++++|..+|+.........| ....|..++..+.+.|+.++|..+++++.+
T Consensus 200 -p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 200 -GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp -TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555555555555555554321222 234455555555555555555555555544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-10 Score=121.07 Aligned_cols=343 Identities=11% Similarity=0.022 Sum_probs=169.9
Q ss_pred HHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCH---HHHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 003946 259 ALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRR---EELRKLQRHIDEAVNLSDIQFRQFYNCLLSC 335 (784)
Q Consensus 259 ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~---~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~ 335 (784)
+-..+.+.|++++|+++|+...+.| +...+..|...|...|+. ++|.+.|+...+. +.. .+..|...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~----A~~~Lg~~ 78 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPR----AQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-----------------------------------CHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHH----HHHHHHHH
Confidence 4556678899999999999998876 334445566667778887 8999999888765 222 36666665
Q ss_pred HHhcC-----ChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhh
Q 003946 336 HLKFG-----DLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFT 410 (784)
Q Consensus 336 ~~~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (784)
+...| +.++|...|++..+.|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~----------------------------------------------------- 105 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGE----------------------------------------------------- 105 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTC-----------------------------------------------------
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCC-----------------------------------------------------
Confidence 55555 77899999887776431
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHcCCCCCCC
Q 003946 411 KDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKT---KELTHFLIKAEKENLQVSHD 487 (784)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~p~ 487 (784)
|+ .+..|...|...+.. .++.+.+......| .|.
T Consensus 106 --------------------------------------~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~ 142 (452)
T 3e4b_A 106 --------------------------------------GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPE 142 (452)
T ss_dssp --------------------------------------SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTT
T ss_pred --------------------------------------HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHH
Confidence 11 222333333333322 22334444444444 222
Q ss_pred HHHHHHHHHHHHHcCCHH----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCHHH
Q 003946 488 DAALGHVITLCISLGWLD----QAHDLLDEMHLAGVRASSSVYASLLKAYIEAN---RPREVTALLRDARSAGIQLDASC 560 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~----~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t 560 (784)
. ...+...|...+.++ .+..++...... +...+..|...|.+.| +.++|...|++..+.| .++...
T Consensus 143 a--~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~ 215 (452)
T 3e4b_A 143 A--GLAQVLLYRTQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQR 215 (452)
T ss_dssp H--HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHH
T ss_pred H--HHHHHHHHHcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHH
Confidence 2 333444455444332 333333222221 2225556666666666 6666666666666655 344444
Q ss_pred HHHHHHHHHHc----CChhHHHHHHHHhHhcCCCCCcHHHHHHHHHH-H--HhcCcHHHHHHHHHHHHhcCCCCCCHHHH
Q 003946 561 YEALLQSKIVQ----KDTPGALHLFKEMKESKIPRSGHQEFEMLVKG-C--AQNHEAGLMAKLLQEVKEGQRIDCGVHDW 633 (784)
Q Consensus 561 ~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~y 633 (784)
+..|-..|... ++.++|+..|++.. .| +...+..+... + ...+++++|.++|+...+.+ +...+
T Consensus 216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g----~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~ 286 (452)
T 3e4b_A 216 VDSVARVLGDATLGTPDEKTAQALLEKIA-PG----YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAE 286 (452)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG----STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHH
Confidence 44444444433 46666666666654 22 23344444444 2 34566666666666665543 44555
Q ss_pred HHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhcccCCCCCCC
Q 003946 634 NNVIHFFCKKR-----LMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA----IGGKYTEVTELWGEMKSFASSTSMNFD 704 (784)
Q Consensus 634 ~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~~~~~a~~~~~~m~~~~~~~~~~p~ 704 (784)
..|...|. .| ++++|.+.|++.. .| +...+..|-..|.. .. ++++|...|++..+ .| +
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~-d~~~A~~~~~~Aa~----~g---~ 353 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKV-YPQKALDHLLTAAR----NG---Q 353 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSC-CHHHHHHHHHHHHT----TT---C
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCc-CHHHHHHHHHHHHh----hC---h
Confidence 55555555 34 6666666666555 22 44455555544544 23 66666666666655 22 2
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 003946 705 EELLDSVLYTFVR----GGFFARANEVVAMMEEGKM 736 (784)
Q Consensus 705 ~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 736 (784)
...+..|...|.. ..+.++|..+++...+.|.
T Consensus 354 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 354 NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 2334445555543 3456667777766666653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=5.8e-09 Score=106.55 Aligned_cols=218 Identities=9% Similarity=0.045 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 468 KELTHFLIKAEKENLQVSHDDAALGHVITLCIS-------LGWL-------DQAHDLLDEMHLAGVRASSSVYASLLKAY 533 (784)
Q Consensus 468 ~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 533 (784)
++|..+|++..... +-+...|..+...+.. .|++ ++|..+|+...+.-.+-+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~---p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 67888999988765 5677778888777753 5775 89999999988831233677899999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH-hcCcH
Q 003946 534 IEANRPREVTALLRDARSAGIQLD-AS-CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA-QNHEA 610 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~-~~~~~ 610 (784)
.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.. |.....|........ ..|++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999875 453 33 78889999999999999999999988765 444445544433332 36889
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCCHHHHHH
Q 003946 611 GLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLG-HLP--NAQTFHSMVTGYAAIGGKYTEVTE 687 (784)
Q Consensus 611 ~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~ll~a~~~~g~~~~~a~~ 687 (784)
++|.++|+...+..+ -+...|..++..+.+.|++++|..+|++..... +.| ....|..++......| +.+.|..
T Consensus 186 ~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g-~~~~a~~ 262 (308)
T 2ond_A 186 SVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG-DLASILK 262 (308)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS-CHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC-CHHHHHH
Confidence 999999988877543 256778888888889999999999999988863 455 3667888888888888 9999999
Q ss_pred HHHHHHhc
Q 003946 688 LWGEMKSF 695 (784)
Q Consensus 688 ~~~~m~~~ 695 (784)
+++++.+.
T Consensus 263 ~~~~a~~~ 270 (308)
T 2ond_A 263 VEKRRFTA 270 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888774
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-07 Score=106.53 Aligned_cols=466 Identities=9% Similarity=0.011 Sum_probs=275.9
Q ss_pred cccccccccCCChHHHHHHHHHHHhccchhhHHHHHHHhcccCCCCCc-hhHHHHHHHHHhccChhhHHHHHHHHHHHHH
Q 003946 78 SMGGTILVQARDPAKLSAEIENAINEHRYGDAWKLYEQHMQMDGFPRK-TLVNKILTSFVESLDSKWLEKAYGLVEQAFE 156 (784)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 156 (784)
.+...+...+.|...|..+|+.+...+.++.+..+|+++...- |.. ..+...+..-.+.++....+.+..+|++.+.
T Consensus 54 ~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 54 KLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 4445556678899999999999999999999999999998843 444 4445555555544431226678888888766
Q ss_pred hcccccCccchHHHHHHHHhhCCCC--------ccHHHHHHHHhhc-CC-CCC-hHHHHHHHHHHhhcCC-CchhhHHHH
Q 003946 157 EGKQILLEKEPLIYLSLGLSKCGLP--------VPASTILRKLVAT-EQ-YPP-VTAWSAILAHMSLTAP-GAYLAAELI 224 (784)
Q Consensus 157 ~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~-g~-~p~-~~~~~~ll~~~~~~~~-~~~~~~~~~ 224 (784)
. .+..++++.+..-+....+.+.. +...++|+..... |. .|+ ...|...|......+. +.....+.+
T Consensus 132 ~-~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 132 K-ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp S-SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred h-cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 5 21225666666655555555554 2344788876654 76 554 4688888865543211 112234567
Q ss_pred HHhhhhhccCCcCccccccccccCCCCc--hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcC
Q 003946 225 LEIGYLFQDGRVDPRKKCNAPLIAMKPN--TNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNG 302 (784)
Q Consensus 225 ~~a~~~~~~~~m~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g 302 (784)
+.+..+|+ +... ++.. ..+|..-. .+.+.-+...+.+++.+ ...
T Consensus 211 ~~~R~iy~--raL~----------iP~~~~~~~w~~Y~-~fe~~~~~~~a~~~~~e---------------------~~~ 256 (679)
T 4e6h_A 211 QYIRKLYK--TLLC----------QPMDCLESMWQRYT-QWEQDVNQLTARRHIGE---------------------LSA 256 (679)
T ss_dssp HHHHHHHH--HHTT----------SCCSSHHHHHHHHH-HHHHHHCTTTHHHHHHH---------------------HHH
T ss_pred HHHHHHHH--HHHh----------CccHHHHHHHHHHH-HHHHhcCcchHHHHHHH---------------------hhH
Confidence 88888888 6532 2111 12232111 11111011111111111 011
Q ss_pred CHHHHHHHHHHHHhh------cCCC----------------hhhHHHHHHHHHHHHHhcC-------ChhHHHHHHHHHH
Q 003946 303 RREELRKLQRHIDEA------VNLS----------------DIQFRQFYNCLLSCHLKFG-------DLNSASKMVLEML 353 (784)
Q Consensus 303 ~~~~A~~l~~~~~~~------~~~~----------------~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~ 353 (784)
+++.|...+.++... ..|. .......|...+.---..+ ..+.+..+|++..
T Consensus 257 ~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL 336 (679)
T 4e6h_A 257 QYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAA 336 (679)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHH
Confidence 223333333332111 0000 0011124666665443332 1234556676666
Q ss_pred HHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhH
Q 003946 354 QRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGML 433 (784)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (784)
..
T Consensus 337 ~~------------------------------------------------------------------------------ 338 (679)
T 4e6h_A 337 QH------------------------------------------------------------------------------ 338 (679)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 52
Q ss_pred HHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003946 434 QKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELT-HFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLD 512 (784)
Q Consensus 434 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 512 (784)
+.-+...|-..+.-+...|+.++|. .+|.+..... +.+...|...+...-+.|+++.|.++|+
T Consensus 339 -------------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~---P~s~~Lwl~~a~~ee~~~~~e~aR~iye 402 (679)
T 4e6h_A 339 -------------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI---PNSAVLAFSLSEQYELNTKIPEIETTIL 402 (679)
T ss_dssp -------------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 1234566666666667777777775 7777776543 4555566667777777777888887777
Q ss_pred HHHHcC---------CCC------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHH
Q 003946 513 EMHLAG---------VRA------------SSSVYASLLKAYIEANRPREVTALLRDARSA-GIQLDASCYEALLQSKIV 570 (784)
Q Consensus 513 ~m~~~g---------~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~ 570 (784)
.+.... -.| ...+|...+....+.|..+.|..+|.+..+. + .+....|...+..-.+
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 776531 013 1346777777777788888888888888764 2 1122233222222222
Q ss_pred c-CChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCCHHH
Q 003946 571 Q-KDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRI-DCGVHDWNNVIHFFCKKRLMQD 648 (784)
Q Consensus 571 ~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~y~~li~~~~~~g~~~~ 648 (784)
. ++.+.|..+|+...+.- |.+...+...+......|+.+.|..+|+......+. .-....|...+..-.+.|+.+.
T Consensus 482 ~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred hCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 2 45788888888877763 566667777777777788888888888888765421 0134678888888889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003946 649 AEKALKRMRSLGHLPNAQTFHSMVTGYAAIG 679 (784)
Q Consensus 649 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 679 (784)
+.++.+++.+. .|+......++.-|.-.+
T Consensus 560 ~~~v~~R~~~~--~P~~~~~~~f~~ry~~~~ 588 (679)
T 4e6h_A 560 VRTLEKRFFEK--FPEVNKLEEFTNKYKVLD 588 (679)
T ss_dssp HHHHHHHHHHH--STTCCHHHHHHHHTCBTT
T ss_pred HHHHHHHHHHh--CCCCcHHHHHHHHhcCCc
Confidence 99999999885 566566666777665433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.7e-08 Score=108.63 Aligned_cols=235 Identities=10% Similarity=0.029 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 003946 506 QAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVT-ALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEM 584 (784)
Q Consensus 506 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 584 (784)
.+..+|++.... ++-+...|-..+.-+...|+.++|. .+|++.... ++.+...|...+...-+.|++++|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344555555544 2335566666666666666666664 666666543 1234444555666666666666666666666
Q ss_pred HhcC---------CCCC-----------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhc
Q 003946 585 KESK---------IPRS-----------GHQEFEMLVKGCAQNHEAGLMAKLLQEVKEG-QRIDCGVHDWNNVIHFFCKK 643 (784)
Q Consensus 585 ~~~~---------~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~y~~li~~~~~~ 643 (784)
.+.. ..|. ....|...+....+.|+.+.|.++|+...+. ....+. .|-..+..--+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~--lyi~~A~lE~~~ 482 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPD--IYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTH--HHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHh
Confidence 5421 0021 2235666666667777788888888877664 222222 333333333343
Q ss_pred -CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChH
Q 003946 644 -RLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFA 722 (784)
Q Consensus 644 -g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 722 (784)
++.+.|.++|+..++. +.-+...|...+.-....| +.+.|..+|+.......+ ..-....|...+..-.+.|+.+
T Consensus 483 ~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~-~~~~AR~lferal~~~~~--~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVN-EESQVKSLFESSIDKISD--SHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHTTTSSS--TTHHHHHHHHHHHHHHHTCCSH
T ss_pred CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHcCCHH
Confidence 4478888888888775 3335556667777666778 888888888887762110 0013456888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003946 723 RANEVVAMMEEGKMFIDKYKYRTLFLKY 750 (784)
Q Consensus 723 ~A~~l~~~m~~~g~~pd~~~~~~li~~~ 750 (784)
.+.++.++|.+. .|+......++.++
T Consensus 559 ~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 559 SVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 888888888875 56666666666444
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.6e-11 Score=120.65 Aligned_cols=245 Identities=13% Similarity=0.037 Sum_probs=146.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKE-------NLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA----- 517 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 517 (784)
+..+|..+...+...|++++|..+|.++.+. . .+....++..+...|...|++++|...+++..+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD--HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS--SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 4578888899999999999999999998763 2 1334556777888888888999998888887754
Q ss_pred -CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 518 -GV-RASSSVYASLLKAYIEANRPREVTALLRDARSA------GIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 518 -g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
+- +....++..+...|...|++++|...|++..+. +-.| ....+..+...+...|++++|++.++++.+..
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 21 223556777777777888888888887776543 1111 22345555555666666666666665554420
Q ss_pred CCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------C
Q 003946 589 IPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSL-------G 660 (784)
Q Consensus 589 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-------g 660 (784)
+.. ..+..| ...++..+...|...|++++|.+.+++..+. .
T Consensus 184 -----------------------------~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 184 -----------------------------QTK--LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp -----------------------------HHT--SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -----------------------------HHH--hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 000 000011 2345677777777777777777777777642 1
Q ss_pred CCCCHH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 661 HLPNAQ-------TFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 661 ~~p~~~-------~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
..|... .+..+...+...+ .+.++...++.... ....+..++..+...|.+.|++++|.+.+++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGT-SFGEYGGWYKACKV-----DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CCHHHHHHHHHHC-------C-CSCCCC--------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHH-HHHHHHHHHhhcCC-----CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112111 1222222233333 44555555555443 1222456788899999999999999999988775
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3.4e-09 Score=99.02 Aligned_cols=164 Identities=13% Similarity=0.083 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLK 531 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 531 (784)
..|..+...|.+.|++++|+..|++..+.. +-+..++..+...|.+.|++++|...+........ .+...+..+..
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD---PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 445555555555555555555555555443 33444455555555555555555555555544321 23444444444
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHH
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 611 (784)
.+...++++.|...+.+..+. . |.+...+..+...+.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~-----------------------------------~--~~~~~~~~~lg~~~~~~g~~~ 124 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL-----------------------------------N--TVYADAYYKLGLVYDSMGEHD 124 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-----------------------------------C--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-----------------------------------C--ccchHHHHHHHHHHHHhCCch
Confidence 455555555555555544433 2 333444444444444444444
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 612 LMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 612 ~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
+|.+.|+...+.++ .+..+|..+..+|.+.|++++|++.|++.++
T Consensus 125 ~A~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 125 KAIEAYEKTISIKP--GFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcc--hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444444322 1344555566666666666666666666555
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.21 E-value=4.3e-09 Score=98.29 Aligned_cols=165 Identities=10% Similarity=0.058 Sum_probs=142.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHH
Q 003946 522 SSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLV 601 (784)
Q Consensus 522 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll 601 (784)
+..+|..+...|.+.|++++|+..|++..+.. +-+...|..+...|.+.|++++|+..+....... |.....+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 66788888888999999999999999887764 2367788888888999999999999998887765 66778888888
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCC
Q 003946 602 KGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGG 680 (784)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~ 680 (784)
..+...++++.+.+.++......+ .+...+..+...|.+.|++++|++.|++..+. .| +..+|..+..+|...|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g- 155 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNT--VYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKG- 155 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCC-
Confidence 999999999999999999887654 25678999999999999999999999999985 45 6788999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 003946 681 KYTEVTELWGEMKS 694 (784)
Q Consensus 681 ~~~~a~~~~~~m~~ 694 (784)
++++|...|++..+
T Consensus 156 ~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 156 LRDEAVKYFKKALE 169 (184)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999887
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.9e-10 Score=119.89 Aligned_cols=214 Identities=9% Similarity=-0.034 Sum_probs=168.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003946 467 TKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWL-DQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTAL 545 (784)
Q Consensus 467 ~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 545 (784)
+++++..+.+..... +.+...+..+...+...|++ ++|...|++..+.. +-+...|..+...|.+.|++++|...
T Consensus 84 ~~~al~~l~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA---QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccC---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 566777777766544 45777788888888889999 99999999988764 23588889999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHc---------CChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc--------C
Q 003946 546 LRDARSAGIQLDASCYEALLQSKIVQ---------KDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN--------H 608 (784)
Q Consensus 546 ~~~m~~~g~~p~~~t~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~--------~ 608 (784)
|++..+. .|+...+..+...|... |++++|+..|++..+.. |.+...|..+..+|... |
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 9998876 57778888888888888 88999999999888765 77788888888888888 8
Q ss_pred cHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHHH
Q 003946 609 EAGLMAKLLQEVKEGQRI-DCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEVT 686 (784)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~-~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a~ 686 (784)
++++|.+.|+...+..+. .-+...|..+..+|...|++++|.+.|++..+. .| +...+..+...+...| ++++|.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg-~~~eAi 312 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLS-RLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH-HHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHH-HHHHHH
Confidence 888888888888875320 016677888888888888888888888888774 35 4566777777888888 888777
Q ss_pred HHHHH
Q 003946 687 ELWGE 691 (784)
Q Consensus 687 ~~~~~ 691 (784)
..+.+
T Consensus 313 ~~~~~ 317 (474)
T 4abn_A 313 ESKGK 317 (474)
T ss_dssp HHTTT
T ss_pred HHhcc
Confidence 65543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.2e-09 Score=110.71 Aligned_cols=235 Identities=8% Similarity=-0.015 Sum_probs=160.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-----CHH
Q 003946 455 IKLVKAFLEAGKTKELTHFLIKAEKENLQVSH----DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR-A-----SSS 524 (784)
Q Consensus 455 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~-----~~~ 524 (784)
......+...|++++|...|.+..+.-. -.+ ...++..+...|...|+++.|...+.+..+.--. + ...
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLI-FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGG-GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 3355667889999999999999876421 112 2356888889999999999999999987753111 1 245
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCChhHHHHHHHHhHhc----CCCCCcHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDARSAGI-QLD----ASCYEALLQSKIVQKDTPGALHLFKEMKES----KIPRSGHQ 595 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~ 595 (784)
+++.+...|...|++++|...|++..+... .++ ..++..+-..|...|++++|+..+++..+. +..|....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 788888999999999999999988754210 122 246777888888899999999988887662 22244566
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG---VHDWNNVIHFFCKKRL---MQDAEKALKRMRSLGHLPN-AQTF 668 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~y~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~ 668 (784)
++..+...+.+.|++++|...++...+.....++ ...++.+...|...|+ +++|+.++++. +..|+ ...+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 7777777788888888888777766543111011 2234566667777777 66666666554 22332 3345
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 669 HSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 669 ~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
..+...|...| ++++|...+++..+
T Consensus 343 ~~la~~y~~~g-~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERK-NFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHH
Confidence 56666777777 77777777777655
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-09 Score=117.01 Aligned_cols=216 Identities=11% Similarity=-0.048 Sum_probs=178.4
Q ss_pred ChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHH
Q 003946 268 TTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRR-EELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSAS 346 (784)
Q Consensus 268 ~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~-~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 346 (784)
.++++++.++...... +.+...+..+...|...|++ ++|.+.|++..+..+.... .|..+..+|.+.|++++|.
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE----AWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHH
Confidence 4677788888766543 34668888999999999999 9999999999887655544 6999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHH
Q 003946 347 KMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVL 426 (784)
Q Consensus 347 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (784)
+.|++..+
T Consensus 158 ~~~~~al~------------------------------------------------------------------------ 165 (474)
T 4abn_A 158 TCFSGALT------------------------------------------------------------------------ 165 (474)
T ss_dssp HHHHHHHT------------------------------------------------------------------------
T ss_pred HHHHHHHh------------------------------------------------------------------------
Confidence 99998876
Q ss_pred HHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 003946 427 QTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEA---------GKTKELTHFLIKAEKENLQVSHDDAALGHVITL 497 (784)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~ 497 (784)
..|+...|..+...+... |++++|...|++..+.. +.+...|..+..+
T Consensus 166 --------------------~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~ 222 (474)
T 4abn_A 166 --------------------HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNA 222 (474)
T ss_dssp --------------------TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred --------------------hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 466678888888899898 99999999999998876 5678889999999
Q ss_pred HHHc--------CCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 498 CISL--------GWLDQAHDLLDEMHLAGVR--ASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS 567 (784)
Q Consensus 498 ~~~~--------g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 567 (784)
|... |++++|...|++..+.... -+...|..+..+|...|++++|...|++..+.. .-+...+..+...
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~ 301 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQL 301 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 9988 8899999999999886420 378889999999999999999999999987764 2356678888888
Q ss_pred HHHcCChhHHHHHHHHh
Q 003946 568 KIVQKDTPGALHLFKEM 584 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m 584 (784)
+...|+.++|++.+.++
T Consensus 302 ~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 302 LEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 88888888887765443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.9e-09 Score=109.33 Aligned_cols=239 Identities=12% Similarity=0.038 Sum_probs=163.7
Q ss_pred HHHHhhhcCChhHHHHHHHhhhhCCC-CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCC-hhhHHHHHH
Q 003946 259 ALAGCLLFETTRKAEQLLDIMPRIGV-KAD----SNLLIIMAHIYERNGRREELRKLQRHIDEAV--NLS-DIQFRQFYN 330 (784)
Q Consensus 259 ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~-~~~~~~~~~ 330 (784)
.-..+...|++++|+..|+...+.-- .+| ..++..+...|...|+++.|...+.+..+.. ... ......+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 34456688999999999999876411 122 3678888999999999999999998877641 111 222223688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhh
Q 003946 331 CLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFT 410 (784)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (784)
.+...|...|++++|.+.|++..+....
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~---------------------------------------------------- 216 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEA---------------------------------------------------- 216 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------------------------------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHH----------------------------------------------------
Confidence 8999999999999999999888764310
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCC
Q 003946 411 KDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKE----NLQVSH 486 (784)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~p 486 (784)
.+.......++..+...|...|++++|...|.+..+. +. .+.
T Consensus 217 ---------------------------------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 262 (383)
T 3ulq_A 217 ---------------------------------EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI-LPS 262 (383)
T ss_dssp ---------------------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGG
T ss_pred ---------------------------------cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-chh
Confidence 0000011257888889999999999999999987762 20 133
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCCC-H
Q 003946 487 DDAALGHVITLCISLGWLDQAHDLLDEMHLAG----VRASSSVYASLLKAYIEANR---PREVTALLRDARSAGIQLD-A 558 (784)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~ 558 (784)
...++..+...+.+.|++++|...+++..+.. -+.....+..+...|...|+ +++|..++++. +..|+ .
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~ 339 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLE 339 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHH
Confidence 35568888888999999999999998876531 11122334566677777777 66666666654 22222 2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
..+..+...|...|++++|...+++..+
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3566677777777788887777776654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-08 Score=104.12 Aligned_cols=277 Identities=10% Similarity=-0.035 Sum_probs=199.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDA----ALGHVITLCISLGWLDQAHDLLDEMHLAGV-RAS----SS 524 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~ 524 (784)
+......+...|++++|...+.+...... ..+.. +++.+...+...|++++|...+++..+..- ..+ ..
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCC--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 33445566789999999999999877542 22322 456667788899999999999998775311 112 23
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCC---CCcH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDARSA----GIQ--LD-ASCYEALLQSKIVQKDTPGALHLFKEMKESKIP---RSGH 594 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~ 594 (784)
++..+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++....... +...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 4667888899999999999999987542 221 32 345677888889999999999999988764321 1134
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHH
Q 003946 595 QEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWN-----NVIHFFCKKRLMQDAEKALKRMRSLGHLP---NAQ 666 (784)
Q Consensus 595 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~ 666 (784)
.++..+...+...|++++|...++..............+. ..+..+...|++++|...+++.......+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 5678888899999999999999998765421111111222 23455789999999999999887643211 133
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 667 TFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDE-ELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 667 ~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
.+..+...+...| ++++|...+++........+..++. ..+..+..++...|+.++|.+.+++...
T Consensus 255 ~~~~la~~~~~~g-~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 255 QWRNIARAQILLG-EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5667778899999 9999999999887654333333333 3677788999999999999999988764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.4e-10 Score=115.75 Aligned_cols=217 Identities=15% Similarity=0.056 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKE------NLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA------ 517 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------ 517 (784)
...++..+...|...|++++|...+.+.... +. .+....++..+...|...|++++|...|++..+.
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 146 (311)
T 3nf1_A 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD-HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC
Confidence 4578889999999999999999999998865 21 1334567888889999999999999999998865
Q ss_pred CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC
Q 003946 518 GVR-ASSSVYASLLKAYIEANRPREVTALLRDARSA------GIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKESKI 589 (784)
Q Consensus 518 g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 589 (784)
+-. ....++..+...|...|++++|..+|++..+. +-.| ...++..+...|...|++++|...++++.+...
T Consensus 147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 222 24567888999999999999999999998764 2122 235677888888888999999998888775320
Q ss_pred CCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHH
Q 003946 590 PRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ-RIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQT 667 (784)
Q Consensus 590 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~ 667 (784)
.. .+ + ...... ........+..+...+...+.+.+|...+++.... .| +..+
T Consensus 227 --~~--~~----------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 280 (311)
T 3nf1_A 227 --ER--EF----------G----------SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTT 280 (311)
T ss_dssp --HH--HH----------C----------------CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHH
T ss_pred --Hh--cC----------C----------CCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHH
Confidence 00 00 0 000000 00001112233333344444555555555555432 22 3456
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 668 FHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 668 ~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
+..+...|...| ++++|..++++..+
T Consensus 281 ~~~la~~~~~~g-~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 281 LKNLGALYRRQG-KFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHH
Confidence 667777777777 77777777777655
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=5e-08 Score=102.87 Aligned_cols=134 Identities=11% Similarity=0.021 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-C
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSH-----DDAALGHVITLCISLGWLDQAHDLLDEMHLA----GVR-A 521 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~ 521 (784)
.++..+...|...|++++|...+.+...... -.+ ...+++.+...|...|++++|.+.|++..+. +-. .
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQ-NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5677788888888888888888888664321 011 2345667777888888888888888776642 111 1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 522 SSSVYASLLKAYIEANRPREVTALLRDARS-----AGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 522 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
...++..+...|...|++++|...|++..+ .. .....++..+...|.+.|+.++|...+++..+.
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 134566677777778888888877777654 22 122455666666777777777777777766553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.07 E-value=8e-08 Score=101.30 Aligned_cols=240 Identities=10% Similarity=-0.022 Sum_probs=160.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh--cCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 003946 293 IMAHIYERNGRREELRKLQRHIDEA--VNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPF 370 (784)
Q Consensus 293 ~li~~~~~~g~~~~A~~l~~~~~~~--~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 370 (784)
.....+...|++++|...|++..+. ..++......++..+...|...|++++|...+.+..+...
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~------------- 172 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ------------- 172 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-------------
Confidence 3455578899999999999998765 2233333334789999999999999999999998877432
Q ss_pred hhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-
Q 003946 371 NAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP- 449 (784)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 449 (784)
. .....+
T Consensus 173 ----------------------------------~--------------------------------------~~~~~~~ 180 (378)
T 3q15_A 173 ----------------------------------N--------------------------------------HPLYSIR 180 (378)
T ss_dssp ----------------------------------T--------------------------------------STTCHHH
T ss_pred ----------------------------------h--------------------------------------CCCchhh
Confidence 0 000011
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENL---QVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA----GVRAS 522 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~ 522 (784)
...+++.+...|...|++++|.+.|.+..+... .......++..+...|...|++++|...|++..+. +.+..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 235788899999999999999999998765310 01112346778889999999999999999998861 22233
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHHHHcCC---hhHHHHHHHHhHhcCCCCCcHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGI---QLD-ASCYEALLQSKIVQKD---TPGALHLFKEMKESKIPRSGHQ 595 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~-~~t~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~ 595 (784)
..++..+...|.+.|++++|...+++..+... .|. ...+..+-..+...++ .++|+..+++ .+..+....
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~ 337 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEA 337 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHH
Confidence 77888999999999999999999999876421 122 2344555555556666 6666666655 222122223
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHH
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEV 620 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~ 620 (784)
.+..+...|...|++++|.+.|+..
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334444444444444444444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-08 Score=93.11 Aligned_cols=163 Identities=13% Similarity=0.065 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLK 531 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 531 (784)
..|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD---AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 456667777788888888888888776554 4566677777777788888888888888777663 335677777777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHH
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 611 (784)
.|...|++++|...++++.+.. ..+...+..+...+...|++++|...+++..+.. |.+...+..+...+...|+++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHH
Confidence 7777777877777777776553 3356666667777777777777777777766543 444445555555555555555
Q ss_pred HHHHHHHHHH
Q 003946 612 LMAKLLQEVK 621 (784)
Q Consensus 612 ~a~~~~~~~~ 621 (784)
+|.+.++...
T Consensus 162 ~A~~~~~~~~ 171 (186)
T 3as5_A 162 EALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.8e-08 Score=91.46 Aligned_cols=164 Identities=10% Similarity=0.016 Sum_probs=101.0
Q ss_pred hhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 003946 254 NTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLL 333 (784)
Q Consensus 254 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li 333 (784)
..|..+...+...|++++|+..++.+.+.. +.+..++..+...+...|++++|...++.+.+..+.... +|..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~a 83 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK----VATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHH
Confidence 345556666667777777777777766543 234456666666666777777777777666655333322 466666
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhh
Q 003946 334 SCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDR 413 (784)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (784)
..|.+.|++++|.+.|++.....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------------------------- 106 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEAN--------------------------------------------------------- 106 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC---------------------------------------------------------
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC---------------------------------------------------------
Confidence 66666677777766666655421
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 003946 414 KFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGH 493 (784)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~ 493 (784)
+.+...|..+...+...|++++|...+.+..+.. +.+..++..
T Consensus 107 ----------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 149 (186)
T 3as5_A 107 ----------------------------------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR---PNEGKVHRA 149 (186)
T ss_dssp ----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred ----------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---ccchHHHHH
Confidence 2234555666666666666666666666666554 344555666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 003946 494 VITLCISLGWLDQAHDLLDEMHL 516 (784)
Q Consensus 494 li~~~~~~g~~~~a~~~~~~m~~ 516 (784)
+...+...|++++|...++...+
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.7e-07 Score=95.13 Aligned_cols=278 Identities=11% Similarity=0.001 Sum_probs=178.9
Q ss_pred HHHHhhhcCChhHHHHHHHhhhhCCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCChhhHHHHHHHH
Q 003946 259 ALAGCLLFETTRKAEQLLDIMPRIGVKADS----NLLIIMAHIYERNGRREELRKLQRHIDEAV--NLSDIQFRQFYNCL 332 (784)
Q Consensus 259 ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~~~~l 332 (784)
.-..+...|++++|...+++.....-..+. .+++.+...+...|++++|.+.+++..... .........+++.+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 334556789999999999998765312222 256667788899999999999999876641 22221111246778
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhh
Q 003946 333 LSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKD 412 (784)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (784)
...+...|++++|...+++.......
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~------------------------------------------------------ 125 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINE------------------------------------------------------ 125 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH------------------------------------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH------------------------------------------------------
Confidence 88899999999999999988874320
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCc-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC--CH
Q 003946 413 RKFVALEAEVKRVLQTLLGMLQKQVELITTEHGIL-QP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSH--DD 488 (784)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p--~~ 488 (784)
.++. .| ....+..+...+...|++++|...+.+.........+ ..
T Consensus 126 -------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 126 -------------------------------QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp -------------------------------TTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred -------------------------------hccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 0000 12 2346677888899999999999999998764311111 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHH
Q 003946 489 AALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS--SSVYA----SLLKAYIEANRPREVTALLRDARSAGIQL---DAS 559 (784)
Q Consensus 489 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~ 559 (784)
.++..+...+...|++++|...+++..+..-.++ ..... ..+..+...|++++|...+++.......+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 5677788888899999999999998875421111 11111 23344778899999999988876432211 133
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhcCCC---CCc-HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003946 560 CYEALLQSKIVQKDTPGALHLFKEMKESKIP---RSG-HQEFEMLVKGCAQNHEAGLMAKLLQEVK 621 (784)
Q Consensus 560 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 621 (784)
.+..+...+...|++++|...+++....... +.. ...+..+..++...|+.++|...++...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4666777788888888888888776542100 111 1133344444555555555555554443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.98 E-value=8.1e-09 Score=103.63 Aligned_cols=214 Identities=15% Similarity=0.062 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CC
Q 003946 488 DAALGHVITLCISLGWLDQAHDLLDEMHLA------GV-RASSSVYASLLKAYIEANRPREVTALLRDARSA------GI 554 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 554 (784)
..++..+...|...|++++|...+++..+. +- +....++..+...|...|++++|...|++..+. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445666666666677777777776666543 11 112445566666666666666666666665432 00
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-CHHH
Q 003946 555 QL-DASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC-GVHD 632 (784)
Q Consensus 555 ~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~ 632 (784)
.| ...++..+...|...|++++|+..+++..+.. +.. ..+..| ...+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------------------~~~--~~~~~~~~~~~ 171 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY-----------------------------ATR--LGPDDPNVAKT 171 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-----------------------------HHH--SCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------------------HHh--cCCCCHHHHHH
Confidence 01 12334444444445555555555544443320 000 000112 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCC-C-CC
Q 003946 633 WNNVIHFFCKKRLMQDAEKALKRMRSL-------GHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTS-M-NF 703 (784)
Q Consensus 633 y~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~-~-~p 703 (784)
+..+...|...|++++|.+.+++..+. ...|....+...+..+...++....+.. +..+.......+ . ..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence 778888888888888888888887753 1223222222223323333313322222 222221111111 1 12
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 704 DEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 704 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
....+..+...|...|++++|.+++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345788899999999999999999998875
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-07 Score=92.04 Aligned_cols=134 Identities=9% Similarity=-0.084 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 486 HDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALL 565 (784)
Q Consensus 486 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 565 (784)
.|...+......+...|++++|...|+...+...+++...+..+..+|...|++++|...|++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 34455666666666777777777777776665433555565556666667777777777777666542 11344566666
Q ss_pred HHHHHcCChhHHHHHHHHhHhcCCCCCcH-------HHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003946 566 QSKIVQKDTPGALHLFKEMKESKIPRSGH-------QEFEMLVKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 622 (784)
..|...|++++|+..+++..+.. |.+. ..|..+...+...|++++|.+.|+...+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 66666666666666666666543 4444 2344444445555555555555555544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5e-08 Score=110.45 Aligned_cols=166 Identities=13% Similarity=0.030 Sum_probs=139.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|+.|-..|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|...|++..+.. +-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~---P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45788899999999999999999999988876 5567788889999999999999999999988864 2357888999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
..+|.+.|++++|++.|++..+.. .-+...|+.+-..|...|++++|++.|++..+.. |.+...+..+...+...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhccc
Confidence 999999999999999999887763 2357788889899999999999999999888765 7778888888888888888
Q ss_pred HHHHHHHHHHHHh
Q 003946 610 AGLMAKLLQEVKE 622 (784)
Q Consensus 610 ~~~a~~~~~~~~~ 622 (784)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.3e-08 Score=111.01 Aligned_cols=163 Identities=12% Similarity=0.047 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHH
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVK 602 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~ 602 (784)
..+++.|...|.+.|++++|+..|++..+.. .-+...|+.+-.+|.+.|++++|+..|++..+.. |.+..+|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 4455555555555566666666655555442 1134455555555555555555555555555433 444444444444
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCC
Q 003946 603 GCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGK 681 (784)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~ 681 (784)
++...|++++|.+.|++..+.++ -+...|+.+..+|...|++++|++.|++.++. .| +...|..+...+...| +
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P--~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g-~ 160 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP--AFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVC-D 160 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT-C
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcc-c
Confidence 44444444444444444444221 12334444444444444444444444444442 23 2334444444444444 4
Q ss_pred HHHHHHHHHHHH
Q 003946 682 YTEVTELWGEMK 693 (784)
Q Consensus 682 ~~~a~~~~~~m~ 693 (784)
+++|.+.++++.
T Consensus 161 ~~~A~~~~~kal 172 (723)
T 4gyw_A 161 WTDYDERMKKLV 172 (723)
T ss_dssp CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-07 Score=91.40 Aligned_cols=202 Identities=14% Similarity=0.008 Sum_probs=156.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
..|+..|......+...|++++|...|.+..+.. .+++...+..+..++...|++++|...|+...+... .+..++.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 80 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYI 80 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHH
Confidence 5578899999999999999999999999999876 127888888889999999999999999999998642 3677899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCC--cHHHHH
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDA-------SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRS--GHQEFE 598 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ 598 (784)
.+...|...|++++|...|++..+... .+. ..|..+-..+...|++++|++.|++..+.. |. +...+.
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~ 157 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALY 157 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHH
Confidence 999999999999999999999987632 244 457777888889999999999999998764 66 667777
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003946 599 MLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ 666 (784)
Q Consensus 599 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 666 (784)
.+...+...| ..+++.+..... .+...|.... ....+.+++|+..+++..+. .|+..
T Consensus 158 ~l~~~~~~~~-----~~~~~~a~~~~~--~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 158 SLGVLFYNNG-----ADVLRKATPLAS--SNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHHGGGTT--TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHH-----HHHHHHHHhccc--CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 7777776544 344555554432 2333444433 23455678888888888774 56543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=6e-08 Score=98.06 Aligned_cols=241 Identities=11% Similarity=0.000 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--C-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003946 469 ELTHFLIKAEKENLQVSHDDAALGHVITLCISL--G-WLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTAL 545 (784)
Q Consensus 469 ~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~--g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 545 (784)
+|.+++.+..+.- ++....| .+ .+. + ++++|...|++. ...|...|++++|...
T Consensus 3 ~a~~~~~~a~k~~---~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 59 (292)
T 1qqe_A 3 DPVELLKRAEKKG---VPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDS 59 (292)
T ss_dssp CHHHHHHHHHHHS---SCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHH
T ss_pred cHHHHHHHHHHHh---CcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4667777776653 3322112 22 232 2 478888887776 3457788999999988
Q ss_pred HHHHHHc----CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHhcC----CCCCcHHHHHHHHHHHHhc-CcHHHHHH
Q 003946 546 LRDARSA----GIQLD-ASCYEALLQSKIVQKDTPGALHLFKEMKESK----IPRSGHQEFEMLVKGCAQN-HEAGLMAK 615 (784)
Q Consensus 546 ~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~~ll~~~~~~-~~~~~a~~ 615 (784)
|++..+. |-.++ ..+|+.+...|...|++++|+..+++..+.. .......++..+...|... |++++|..
T Consensus 60 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~ 139 (292)
T 1qqe_A 60 FLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAID 139 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 8877542 21111 4678888888999999999998888776532 1111235788888899996 99999999
Q ss_pred HHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCCHHHH
Q 003946 616 LLQEVKEGQRIDCG----VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA------QTFHSMVTGYAAIGGKYTEV 685 (784)
Q Consensus 616 ~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~a~~~~g~~~~~a 685 (784)
.|++..+..+-..+ ..+|+.+...|.+.|++++|+..|++..+....... ..|..+..++...| ++++|
T Consensus 140 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A 218 (292)
T 1qqe_A 140 CYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT-DAVAA 218 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC-CHHHH
Confidence 99887764311111 356889999999999999999999999985322221 15667777888899 99999
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHh
Q 003946 686 TELWGEMKSFASSTSMNFDEELLDSVLYTFV--RGGFFARANEVVAMMEE 733 (784)
Q Consensus 686 ~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~ 733 (784)
...+++..+..+...-......+..++.+|. ..+++++|.+.++++..
T Consensus 219 ~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 219 ARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 9999998763222111111223455666665 45678888888877654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.9e-08 Score=98.53 Aligned_cols=238 Identities=14% Similarity=0.092 Sum_probs=157.0
Q ss_pred hcCChhHHHHHHHhhhh-------CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----CCChhhHHHHHHHHH
Q 003946 265 LFETTRKAEQLLDIMPR-------IGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAV----NLSDIQFRQFYNCLL 333 (784)
Q Consensus 265 ~~g~~~~A~~l~~~m~~-------~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~----~~~~~~~~~~~~~li 333 (784)
..|++++|+.+|++..+ ...+....++..+...|...|++++|...+++..+.. .++......+|..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45666666666665553 2212234778889999999999999999999977642 011222223799999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhh
Q 003946 334 SCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDR 413 (784)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (784)
..|...|++++|.+.|++.......
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~------------------------------------------------------- 117 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREK------------------------------------------------------- 117 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHH-------------------------------------------------------
Confidence 9999999999999999988874210
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCCCCCC
Q 003946 414 KFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKE-----NLQVSHD 487 (784)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~p~ 487 (784)
. .+...| ...+|..+...|...|++++|...|.+..+. +...+..
T Consensus 118 -----------~------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 118 -----------V------------------LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp -----------H------------------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred -----------H------------------cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 0 000012 3467888999999999999999999998765 1001223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHHcCChHHHHH------HHHHHHHcC
Q 003946 488 DAALGHVITLCISLGWLDQAHDLLDEMHLA-------GVRA-SSSVYASLLKAYIEANRPREVTA------LLRDARSAG 553 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~-~~~~~~~li~~~~~~g~~~~A~~------~~~~m~~~g 553 (784)
..++..+...|...|++++|...+++..+. ...+ ....|..+...+...+....+.. .++.... .
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 247 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-D 247 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-C
Confidence 567888899999999999999999998864 1122 22333333333333333222222 2221111 0
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 554 IQLDASCYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 554 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
......++..+...|...|++++|...+++..+.
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0113457888999999999999999999987753
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.78 E-value=4.2e-07 Score=79.06 Aligned_cols=128 Identities=14% Similarity=0.122 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA 605 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 605 (784)
|..+...|...|++++|..+++++.+.. ..+...|..+...+...|++++|...++++...+ |.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHH
Confidence 3344444444444455544444444332 1233444444444444445555555444444432 233333444444444
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 606 QNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
..|++++|.+.++.+....+ .+...+..+...|.+.|++++|.+.++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 44444444444444433221 1334455555555555555555555555544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.78 E-value=5e-07 Score=78.57 Aligned_cols=130 Identities=17% Similarity=0.154 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKA 532 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 532 (784)
.|..+...+...|++++|..+|.++.+.. +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC---CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 45666777777777777777777777655 4456666667777777777777777777776654 2356666677777
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 533 YIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 533 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
+...|++++|...++++.+.. ..+...+..+...+...|++++|...++++.+.
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777777776553 234566666677777777777777777766553
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-06 Score=86.79 Aligned_cols=256 Identities=10% Similarity=0.008 Sum_probs=170.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 459 KAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANR 538 (784)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 538 (784)
+-.--.|.+..++.- ..+-.. ..++ ..-.-+.++|...|+++.+ ..-.|....+..+..-+ ..+
T Consensus 21 kn~fy~G~yq~~i~e---~~~~~~-~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQE---IEKFSK-VTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHTTTCHHHHTHH---HHTSSC-CCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHhhHHHHHHHH---HHhcCc-cchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence 344467888887763 332221 1233 3333455888888876642 12234544444444333 322
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003946 539 PREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQ 618 (784)
Q Consensus 539 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 618 (784)
|...|++..+.+ .++..++..+..++...|++++|++++.+....+-.+.+...+..++..+.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 778888877655 4666777788888999999999999999887665323677889999999999999999999999
Q ss_pred HHHhcCCCCC-----CHHHHHHHHHH--HHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Q 003946 619 EVKEGQRIDC-----GVHDWNNVIHF--FCK--KRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELW 689 (784)
Q Consensus 619 ~~~~~~~~~p-----~~~~y~~li~~--~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~ 689 (784)
.|.+.. | +..+...|..+ ... .++..+|..+|+++.+. .|+..+-..++.++.+.| ++++|...+
T Consensus 161 ~~~~~~---~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g-~~~eAe~~L 234 (310)
T 3mv2_B 161 NYTNAI---EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQR-NIAEAQGIV 234 (310)
T ss_dssp HHHHHS---CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHT-CHHHHHHHH
T ss_pred HHHhcC---ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcC-CHHHHHHHH
Confidence 998753 5 23444555544 222 34899999999999775 466444455566888889 999999999
Q ss_pred HHHHhcccCC-C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003946 690 GEMKSFASST-S----MNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYR 744 (784)
Q Consensus 690 ~~m~~~~~~~-~----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 744 (784)
+.+.+..+.. . -+-++.+...+|......|+ +|.+++.++++. .|+.....
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~i~ 290 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAFIK 290 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHHHH
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChHHH
Confidence 9776531100 0 02356677566666666786 899999999984 56655443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=9e-07 Score=89.34 Aligned_cols=194 Identities=11% Similarity=-0.019 Sum_probs=115.1
Q ss_pred HHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHH
Q 003946 498 CISLGWLDQAHDLLDEMHLA----GVRAS-SSVYASLLKAYIEANRPREVTALLRDARSAGIQ-LD----ASCYEALLQS 567 (784)
Q Consensus 498 ~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~li~~ 567 (784)
|...|++++|...|.+..+. |-+++ ..+|+.+..+|.+.|++++|...|++..+.... .+ ..+|+.+-..
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555666666555554432 11111 345566666666666666666666655432100 01 2456666677
Q ss_pred HHHc-CChhHHHHHHHHhHhcCCCC----CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCH-----HHHHHHH
Q 003946 568 KIVQ-KDTPGALHLFKEMKESKIPR----SGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGV-----HDWNNVI 637 (784)
Q Consensus 568 ~~~~-g~~~~A~~~~~~m~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~y~~li 637 (784)
|... |++++|+..|++..+..... ....++..+...+.+.|++++|...|+...+..+-.+.. ..|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 7775 77777777777765532100 013457777778888888888888888877654322222 2577888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH--HcCCCHHHHHHHHHHHHh
Q 003946 638 HFFCKKRLMQDAEKALKRMRSLGHLPNAQ------TFHSMVTGYA--AIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 638 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~ll~a~~--~~g~~~~~a~~~~~~m~~ 694 (784)
.+|...|++++|...|++..+ +.|+.. .+..++.+|. ..+ ++++|...|+++..
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~-~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSE-QLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTT-THHHHHHHHTTSSC
T ss_pred HHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHH-HHHHHHHHhccCCc
Confidence 889999999999999998876 344321 3444556664 234 67788777766543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.8e-07 Score=90.55 Aligned_cols=233 Identities=14% Similarity=0.063 Sum_probs=151.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH
Q 003946 464 AGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVT 543 (784)
Q Consensus 464 ~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 543 (784)
.|++++|.+++++..+.. +.. + +...++++.|...|... ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~---~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL---KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH---CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc---ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 467788888888877643 211 0 11146777777776654 34667778888888
Q ss_pred HHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCChhHHHHHHHHhHhc----CCCCCcHHHHHHHHHHHHhcCcHHHHH
Q 003946 544 ALLRDARSAGIQ-LD----ASCYEALLQSKIVQKDTPGALHLFKEMKES----KIPRSGHQEFEMLVKGCAQNHEAGLMA 614 (784)
Q Consensus 544 ~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~ 614 (784)
..|.+..+.... .+ ..+|+.+...|...|++++|+..|++..+. |.......++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 888776432100 11 346777778888888888888888876543 2111123467777788877 9999999
Q ss_pred HHHHHHHhcCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCCHHHH
Q 003946 615 KLLQEVKEGQRIDC----GVHDWNNVIHFFCKKRLMQDAEKALKRMRSL----GHLPN-AQTFHSMVTGYAAIGGKYTEV 685 (784)
Q Consensus 615 ~~~~~~~~~~~~~p----~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~g~~~~~a 685 (784)
..|+...+..+-.. ...+|+.+...|.+.|++++|++.|++..+. +..+. ...+..+...+...| ++++|
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A 214 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA-DYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC-CHHHH
Confidence 88887665321100 1457888999999999999999999988763 21111 225566666777779 99999
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003946 686 TELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEV 727 (784)
Q Consensus 686 ~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 727 (784)
...+++.. ..+.............++.++ ..|+.+.+.++
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999887 432211111223455566666 56787766664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.3e-06 Score=84.64 Aligned_cols=183 Identities=11% Similarity=0.099 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHH
Q 003946 487 DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS---SSVYASLLKAYIEANRPREVTALLRDARSAGI-QLD-ASCY 561 (784)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~ 561 (784)
+...+-.....+.+.|++++|...|+.+.+... .+ ...+..+..+|.+.|++++|...|++..+... .|+ ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 444455566666677777777777777766531 12 45666666677777777777777777665421 111 2345
Q ss_pred HHHHHHHHH--------cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHH
Q 003946 562 EALLQSKIV--------QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDW 633 (784)
Q Consensus 562 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y 633 (784)
..+..++.. .|++++|+..|++..+.. |.+......+ ..+..+... ....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHHHH
Confidence 555555555 666666666666666543 3322111111 111111100 01123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHh
Q 003946 634 NNVIHFFCKKRLMQDAEKALKRMRSLGHLPN----AQTFHSMVTGYAAI----------GGKYTEVTELWGEMKS 694 (784)
Q Consensus 634 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~a~~~~----------g~~~~~a~~~~~~m~~ 694 (784)
-.+...|.+.|++++|+..|++..+. .|+ ...+..+..+|... | ++++|...++++.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~-~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPE-RYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccc-hHHHHHHHHHHHHH
Confidence 55666777777788887777777764 233 34555566666654 6 77777777777765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-06 Score=81.81 Aligned_cols=130 Identities=10% Similarity=0.068 Sum_probs=66.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 529 LLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
+...|.+.|++++|...|++..+.. +-+...|..+...+...|++++|+..|++..+.. |.+..++..+...+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHh
Confidence 5556666666666666666665543 1245556666666666666666666666666544 555555555555554433
Q ss_pred c--HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003946 609 E--AGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ 666 (784)
Q Consensus 609 ~--~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 666 (784)
+ ...+...++.... ..|....+..+..++...|++++|...|++..+ +.|+..
T Consensus 137 ~~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 2 2233333333321 112222233334444455666666666666655 345543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.5e-06 Score=82.57 Aligned_cols=188 Identities=7% Similarity=-0.047 Sum_probs=123.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC-C
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD---DAALGHVITLCISLGWLDQAHDLLDEMHLAGV-RA-S 522 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~-~ 522 (784)
..+...+-.+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|...|+...+... .| .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG---RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 3466778888889999999999999999998875 233 56788888999999999999999999998632 12 2
Q ss_pred HHHHHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCc
Q 003946 523 SSVYASLLKAYIE--------ANRPREVTALLRDARSAGIQLDA-SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSG 593 (784)
Q Consensus 523 ~~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 593 (784)
...+..+..++.. .|++++|...|++..+. .|+. ..+..+ ..+...... .
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~ 147 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----L 147 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----H
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----H
Confidence 5667778888888 99999999999999876 3432 222111 001100000 0
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 003946 594 HQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC-GVHDWNNVIHFFCKK----------RLMQDAEKALKRMRSL 659 (784)
Q Consensus 594 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~----------g~~~~A~~~~~~m~~~ 659 (784)
...+..+...+.+.|++++|...|+.+.+..+-.| ....+..+..+|... |++++|...|++..+.
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 11234445555566666666666666555442222 123455555555544 6666777776666653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-06 Score=87.53 Aligned_cols=167 Identities=10% Similarity=0.031 Sum_probs=125.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 486 HDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALL 565 (784)
Q Consensus 486 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 565 (784)
.+...+..+...+.+.|++++|...|++..+.. +-+...+..+...|.+.|++++|...+++.... .|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 344556667778888999999999999988764 236788888899999999999999999988665 45554333332
Q ss_pred H-HHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 003946 566 Q-SKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKR 644 (784)
Q Consensus 566 ~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g 644 (784)
. .+...++.++|+..+++..... |++...+..+...+...|++++|...|..+...++-..+...+..+...|...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2 3556777888888888887765 777778888888888888888888888888776543333667888888888888
Q ss_pred CHHHHHHHHHHHH
Q 003946 645 LMQDAEKALKRMR 657 (784)
Q Consensus 645 ~~~~A~~~~~~m~ 657 (784)
+.++|...+++-.
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888877776654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.58 E-value=5.1e-06 Score=82.28 Aligned_cols=170 Identities=10% Similarity=0.004 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----C
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRA-----S 522 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-----~ 522 (784)
.++..++..+..++...|++++|++++.+....+. -.-+...+..++..+.+.|+.+.|.+.++.|.+. .| +
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~ 173 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGD 173 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cccccccc
Confidence 34555556677777777788887777777655441 0134555666777777777777777777777665 34 2
Q ss_pred HHHHHHHHHHH--HHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC----C----C
Q 003946 523 SSVYASLLKAY--IEAN--RPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESK----I----P 590 (784)
Q Consensus 523 ~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~----~----~ 590 (784)
..+..-|+.++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.. - .
T Consensus 174 d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~ 251 (310)
T 3mv2_B 174 NEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAV 251 (310)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCC
Confidence 34444454442 2223 777777777777654 4554444445556777777777777777655421 0 2
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 003946 591 RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ 624 (784)
Q Consensus 591 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 624 (784)
|.++.+...++......|+ +|.++++++.+..
T Consensus 252 p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 252 LYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 5566666555555555665 6677777777644
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.3e-06 Score=80.27 Aligned_cols=75 Identities=7% Similarity=0.015 Sum_probs=37.6
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 003946 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCK 642 (784)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~ 642 (784)
+...|...|++++|+..|++..+.. |.+...+..+...+...|++++|...|+...+.++- +..+|..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD--NLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHH
Confidence 4455555556666666555555543 444455555555555555555555555555443321 23344444444433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.56 E-value=0.00015 Score=78.54 Aligned_cols=47 Identities=6% Similarity=-0.041 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003946 468 KELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA 517 (784)
Q Consensus 468 ~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 517 (784)
+.+..+|+++.... +.+...|...+.-+.+.|+++.|..+|+.....
T Consensus 196 ~Rv~~~ye~al~~~---p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 196 SRMHFIHNYILDSF---YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 44667888877764 555777877778788888899999999888877
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.55 E-value=5.8e-06 Score=79.65 Aligned_cols=204 Identities=9% Similarity=0.024 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCH-HHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD-DAALGHVITLCISLGWLDQAHDLLDEMHLAGVR-ASS-SVY 526 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~-~~~ 526 (784)
+...+..+...+.+.|++++|...|+++.+..+ -.|. ...+..+..++.+.|++++|...|+.+.+.... +.. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 344555666677788888888888888776542 1121 245666777777888888888888887765322 111 133
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh
Q 003946 527 ASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ 606 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 606 (784)
-.+..++.+.|.. .++ .|..+-..+...|+.++|+..|+++.+.. |.+..........
T Consensus 82 ~~~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l--- 139 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL--- 139 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH---
T ss_pred HHHHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH---
Confidence 3333344332210 000 11112222334566777777777776654 4433222211100
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCCH
Q 003946 607 NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA----QTFHSMVTGYAAIGGKY 682 (784)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~a~~~~g~~~ 682 (784)
..+...+. ...-.+...|.+.|++++|+..|+++.+. .|+. ..+..+..++.+.| ++
T Consensus 140 -------~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g-~~ 200 (225)
T 2yhc_A 140 -------VFLKDRLA---------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQ-MN 200 (225)
T ss_dssp -------HHHHHHHH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-CH
T ss_pred -------HHHHHHHH---------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcC-Cc
Confidence 00001110 11234456667777777777777777664 3432 34666666777777 77
Q ss_pred HHHHHHHHHHHhc
Q 003946 683 TEVTELWGEMKSF 695 (784)
Q Consensus 683 ~~a~~~~~~m~~~ 695 (784)
++|...++.+...
T Consensus 201 ~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 201 AQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 7777777766653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-05 Score=79.35 Aligned_cols=168 Identities=6% Similarity=-0.088 Sum_probs=110.1
Q ss_pred HHHHHHcCChhHHHHHHHHhHhcCCCCCcH----HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC----HHHHHHH
Q 003946 565 LQSKIVQKDTPGALHLFKEMKESKIPRSGH----QEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG----VHDWNNV 636 (784)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~y~~l 636 (784)
+..+...|++++|..++++..+.....++. ..+..+...+...+++++|...|+.........++ ..+|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 344455555555555555555432111111 11223444444555666666666666553222223 3468999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC-HHHHH
Q 003946 637 IHFFCKKRLMQDAEKALKRMRSL-----GHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD-EELLD 709 (784)
Q Consensus 637 i~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~ 709 (784)
...|...|++++|+..|++..+. +..|. ..+|..+...|...| ++++|...+++..+.....+..+. ..+|.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999988841 22222 347788888999999 999999999988775544444444 67899
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHh
Q 003946 710 SVLYTFVRGGF-FARANEVVAMMEE 733 (784)
Q Consensus 710 ~li~~~~~~g~-~~~A~~l~~~m~~ 733 (784)
.+...|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999888763
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-06 Score=81.05 Aligned_cols=159 Identities=10% Similarity=-0.015 Sum_probs=73.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcC
Q 003946 494 VITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS-KIVQK 572 (784)
Q Consensus 494 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g 572 (784)
....+.+.|++++|...|+...+.. +.+...+..+...|...|++++|...|++..+. .|+...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhc
Confidence 3444455555555555555544332 124455555555555555555555555555433 2232222111111 11111
Q ss_pred ChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003946 573 DTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKA 652 (784)
Q Consensus 573 ~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~ 652 (784)
+..+|+..+++..+.. |.+...+..+...+...|++++|...|+.+.+..+..++...+..+...|...|+.++|...
T Consensus 89 ~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 89 AESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp TSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred ccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2223455555555433 44444555555555555555555555555544332112234455555555555555555555
Q ss_pred HHHHH
Q 003946 653 LKRMR 657 (784)
Q Consensus 653 ~~~m~ 657 (784)
|++.+
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.4e-05 Score=75.72 Aligned_cols=200 Identities=7% Similarity=0.019 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHcCCCCC
Q 003946 452 KIYIKLVKAFLEAG--KTKELTHFLIKAEKENLQVSHDDAALGHVITLC----ISL---GWLDQAHDLLDEMHLAGVRAS 522 (784)
Q Consensus 452 ~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~----~~~---g~~~~a~~~~~~m~~~g~~~~ 522 (784)
..|+.--..+...| ++++++++++.+.... +-+..+|+.--..+ ... ++++++..+++.+.+.. +-|
T Consensus 68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkn 143 (306)
T 3dra_A 68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDN---EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKN 143 (306)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCC
Confidence 45555555555555 6666666666666554 33344444433333 333 55666666666666554 235
Q ss_pred HHHHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------hhHHHHHHHHhHhcCCCCCcH
Q 003946 523 SSVYASLLKAYIEANRPR--EVTALLRDARSAGIQLDASCYEALLQSKIVQKD------TPGALHLFKEMKESKIPRSGH 594 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~~~~~ 594 (784)
..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.--..+...+. ++++++.++++.... |.+.
T Consensus 144 y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~--p~n~ 220 (306)
T 3dra_A 144 HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC--PQNP 220 (306)
T ss_dssp HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC--SSCH
T ss_pred HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC--CCCc
Confidence 666665555555566655 66666666655542 355555555444444443 555555555555544 5555
Q ss_pred HHHHHHHHHHHhcCcHHH-HHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 595 QEFEMLVKGCAQNHEAGL-MAKLLQEVKEGQR-IDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 595 ~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~-~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
..|+.+...+.+.|+... +..+.+.+.+.+. -..+...+..+.+.|.+.|+.++|.++++.+.+
T Consensus 221 SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 221 STWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 555555555555554222 2333333332110 012344555555555555555555555555543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-06 Score=99.46 Aligned_cols=173 Identities=10% Similarity=-0.059 Sum_probs=142.2
Q ss_pred HHcCChHHHHHHHHHHH--------HcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 462 LEAGKTKELTHFLIKAE--------KENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAY 533 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~--------~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 533 (784)
...|++++|++.+++.. +.. +.+...+..+..++.+.|++++|...|++..+.. +-+...|..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF---SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC---TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc---ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHH
Confidence 78899999999999988 443 4556678888899999999999999999999864 33788999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHH
Q 003946 534 IEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLM 613 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 613 (784)
...|++++|...|++..+.. .-+...|..+-.+|.+.|++++ ++.|++..+.. |.+...|..+..++.+.|++++|
T Consensus 478 ~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998764 2366788899999999999999 99999998866 77788899999999999999999
Q ss_pred HHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCC
Q 003946 614 AKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRL 645 (784)
Q Consensus 614 ~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~ 645 (784)
.+.|+...+.+ |+ ...|..+..+|...|+
T Consensus 554 ~~~~~~al~l~---P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPTS---RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTTS---TTHHHHHHHHHHHTC----
T ss_pred HHHHHhhcccC---cccHHHHHHHHHHHHccCC
Confidence 99998887743 44 4567777777766554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.8e-05 Score=75.52 Aligned_cols=234 Identities=9% Similarity=0.029 Sum_probs=143.8
Q ss_pred HHHHHcCCh-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--
Q 003946 459 KAFLEAGKT-KELTHFLIKAEKENLQVSHDDAALGHVITLCISLG--WLDQAHDLLDEMHLAGVRASSSVYASLLKAY-- 533 (784)
Q Consensus 459 ~~~~~~g~~-~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-- 533 (784)
.+..+.|.+ ++|+.++..+.... +-+...|+.--..+...| ++++++++++.+.....+ +..+|+.--..+
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHH
Confidence 333444544 68999999998876 566667888777777888 899999999998887533 556666544444
Q ss_pred --HHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh
Q 003946 534 --IEA---NRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTP--GALHLFKEMKESKIPRSGHQEFEMLVKGCAQ 606 (784)
Q Consensus 534 --~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~ 606 (784)
... +++++++.+++.+.+.. ..|...|+.---.+.+.|.++ ++++.++++.+.. |.+...|+.-...+.+
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHS
T ss_pred HHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHh
Confidence 444 67888888888887764 347777877777777777777 7777777777765 4444444444444433
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCHHHH
Q 003946 607 NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKYTEV 685 (784)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~~a 685 (784)
.++. ++ ...++++++.++++... .| |...|+.+-..+.+.|...+.+
T Consensus 193 l~~~-----------------~~-------------~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 193 KKHL-----------------AT-------------DNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp SGGG-----------------CC-------------HHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred cccc-----------------ch-------------hhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHH
Confidence 3320 00 00155566666665553 23 4555665555555555223334
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 686 TELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 686 ~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
..+.+++.+... .-..++..+..+.+.|.+.|+.++|.++++.+.+
T Consensus 241 ~~~~~~~~~~~~--~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 241 EEFSLQFVDLEK--DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHTTEEGGG--TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 445555443210 0123555666666666666666666666666654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00021 Score=77.31 Aligned_cols=357 Identities=10% Similarity=0.003 Sum_probs=214.2
Q ss_pred CChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhhc---CCChhhHHHHHHHHHHHHH----h
Q 003946 267 ETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGR-REELRKLQRHIDEAV---NLSDIQFRQFYNCLLSCHL----K 338 (784)
Q Consensus 267 g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~-~~~A~~l~~~~~~~~---~~~~~~~~~~~~~li~~~~----~ 338 (784)
|+++.+..+|+..+.. .|+...|...+....+.+. .+....+|+...... ..+.. +|...+..+. .
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~----iW~~Yi~f~~~~~~~ 101 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYG----LYKEYIEEEGKIEDE 101 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHH----HHHHHHHHTSSCSSH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHH----HHHHHHHHHHhchhh
Confidence 8899999999999874 4899999998888877774 456778888877652 22322 6988888654 3
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHH
Q 003946 339 FGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVAL 418 (784)
Q Consensus 339 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (784)
.|+++.+.++|++...........+-..+..+.
T Consensus 102 ~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE----------------------------------------------- 134 (493)
T 2uy1_A 102 QTRIEKIRNGYMRALQTPMGSLSELWKDFENFE----------------------------------------------- 134 (493)
T ss_dssp HHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-----------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-----------------------------------------------
Confidence 467788888888876521000000000000000
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 003946 419 EAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLC 498 (784)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~ 498 (784)
. ..+..+...++.... +.+..|..++..+...-. ..+...|...+.--
T Consensus 135 --------~--------------------~~~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~~~--~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 135 --------L--------------------ELNKITGKKIVGDTL--PIFQSSFQRYQQIQPLIR--GWSVKNAARLIDLE 182 (493)
T ss_dssp --------H--------------------HHCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--TCSHHHHHHHHHHH
T ss_pred --------H--------------------HhccccHHHHHHHHh--HHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHH
Confidence 0 000011111111111 122333333433332110 11223344433332
Q ss_pred HHc--C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003946 499 ISL--G-----WLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQ 571 (784)
Q Consensus 499 ~~~--g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 571 (784)
... | ..+.+..+|+...... +.+...|-..+.-+.+.|+.+.|..++++.... +.+...|. .|+..
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~ 255 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLV 255 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhh
Confidence 111 0 1356778899888753 456888988888899999999999999999887 23333332 23332
Q ss_pred CChhHHHHHHHHhHhcC---------C--CCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 003946 572 KDTPGALHLFKEMKESK---------I--PRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFF 640 (784)
Q Consensus 572 g~~~~A~~~~~~m~~~~---------~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~ 640 (784)
.+.++. ++.+.+.- . .+.....|...+....+.++++.|..+|+.. ...+ .+...|-.....-
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE 329 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIE 329 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHH
Confidence 222222 22222211 0 0112245667777777788899999999999 3221 2334444323222
Q ss_pred HhcC-CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhc
Q 003946 641 CKKR-LMQDAEKALKRMRSLGHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRG 718 (784)
Q Consensus 641 ~~~g-~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~ 718 (784)
...+ +.+.|..+|+...+.- |+ ...|...+.-....| +.+.|..+|+.+.+ ....|...+..-...
T Consensus 330 ~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~-~~~~aR~l~er~~k---------~~~lw~~~~~fE~~~ 397 (493)
T 2uy1_A 330 YYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIG-DEENARALFKRLEK---------TSRMWDSMIEYEFMV 397 (493)
T ss_dssp HHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHSCC---------BHHHHHHHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH---------HHHHHHHHHHHHHHC
Confidence 2333 6999999999998752 43 455566677667788 99999999998742 578899998888889
Q ss_pred CChHHHHHHHHHHHh
Q 003946 719 GFFARANEVVAMMEE 733 (784)
Q Consensus 719 g~~~~A~~l~~~m~~ 733 (784)
|+.+.+.++++++.+
T Consensus 398 G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 398 GSMELFRELVDQKMD 412 (493)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998888874
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.4e-06 Score=77.72 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003946 488 DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRA-SSSVYASLLKAYIEANRPREVTALLRD 548 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 548 (784)
...+..+...+...|++++|...|+++.+....+ +...+..+...|...|+.++|...|++
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 3444444444444444444444444444432111 133444444444444444444444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.47 E-value=5.9e-06 Score=93.97 Aligned_cols=152 Identities=14% Similarity=0.024 Sum_probs=129.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+..++.+.|++++|...|++..+.. +.+...|..+..++...|++++|...|++..+.. +-+...|..+
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~l 507 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERV---GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLAL 507 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 55788889999999999999999999999876 5677889999999999999999999999999875 2367889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
..+|.+.|++++ ...|++..+.. .-+...|..+-.++.+.|++++|++.|++..+.. |.+...+..+..++...++
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 999999999999 99999998764 3367889999999999999999999999987755 7777888888888766554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-05 Score=76.98 Aligned_cols=177 Identities=15% Similarity=0.027 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----ChHHHHH
Q 003946 469 ELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN----RPREVTA 544 (784)
Q Consensus 469 ~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~ 544 (784)
+|.+.|.+..+.| +...+..+-..|...+++++|...|+...+.| +...+..|-..|.. + +.++|..
T Consensus 4 eA~~~~~~aa~~g-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 4 EPGSQYQQQAEAG-----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp CTTHHHHHHHHTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred hHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 4566666666655 45556667777777778888888887777765 56667777777766 5 7777887
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh----cCcHHHHHHH
Q 003946 545 LLRDARSAGIQLDASCYEALLQSKIV----QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ----NHEAGLMAKL 616 (784)
Q Consensus 545 ~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~ 616 (784)
.|++..+.| +...+..|-..|.. .++.++|+..|++..+.+........+..|...|.. .+++++|..+
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 777776643 55566666666655 667777777777776655210124566666666666 6677777777
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 003946 617 LQEVKEGQRIDCGVHDWNNVIHFFCKK-R-----LMQDAEKALKRMRSLG 660 (784)
Q Consensus 617 ~~~~~~~~~~~p~~~~y~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 660 (784)
|+...+.. ++...+..|...|... | +.++|.+.|++..+.|
T Consensus 152 ~~~A~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77776541 2344566666666543 2 6777777777776655
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=6.7e-06 Score=82.56 Aligned_cols=166 Identities=11% Similarity=0.028 Sum_probs=120.5
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 003946 286 ADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAA 365 (784)
Q Consensus 286 pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 365 (784)
.+...+..+...+.+.|++++|...|++..+..+.+.. .+..+...|.+.|++++|...|++....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~la~~~~~~g~~~~A~~~l~~~~~~---------- 180 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE----IGLLLAETLIALNRSEDAEAVLXTIPLQ---------- 180 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH----HHHHHHHHHHHTTCHHHHHHHHTTSCGG----------
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh----HHHHHHHHHHHCCCHHHHHHHHHhCchh----------
Confidence 34456667777888888899998888888876555544 5888888888888888888888766542
Q ss_pred hchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcC
Q 003946 366 AMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHG 445 (784)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (784)
T Consensus 181 -------------------------------------------------------------------------------- 180 (287)
T 3qou_A 181 -------------------------------------------------------------------------------- 180 (287)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCHHHHH-HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCH
Q 003946 446 ILQPTEKIYI-KLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR-ASS 523 (784)
Q Consensus 446 ~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~ 523 (784)
.|+..... .....+.+.++.++|...|++..... +.+...+..+...+...|++++|...|..+.+.... .+.
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~---P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN---PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 33333222 22233566777778888888887776 566777888888888888888888888888876422 125
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 524 SVYASLLKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 550 (784)
..+..+...|...|+.++|...|++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 678888888888888888887777654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.5e-05 Score=76.78 Aligned_cols=170 Identities=7% Similarity=-0.029 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDD-AALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
...+..+..+|.+.|++++|+..|++..+..+ -.+.. ..+..+..++...|.. .+ ..|..+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~~~~g~~~~~~~~~-----~~------------~~~~~~ 102 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVMYMRGLTNMALDDS-----AL------------QGFFGV 102 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHHHHHHHHHHhhhhh-----hh------------hhhhcc
Confidence 35788889999999999999999999988752 12221 1333344444433210 11 112223
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDAS-CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
...+...|+.++|...|+++.+. .|+.. .+.+.... ..+...+ ......+...+.+.|
T Consensus 103 ~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~---------~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 103 DRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL---------AKYEYSVAEYYTERG 161 (225)
T ss_dssp -----CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH---------HHHHHHHHHHHHHHT
T ss_pred chhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH---------HHHHHHHHHHHHHcC
Confidence 33444567788888888888765 34322 22111100 0000000 112234456677777
Q ss_pred cHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 609 EAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
++++|...|+.+.+..+-.|. ...+..+..+|.+.|+.++|.+.++.+...
T Consensus 162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 888888888877776532221 246777888888888888888888887775
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=7.1e-06 Score=91.51 Aligned_cols=155 Identities=10% Similarity=-0.028 Sum_probs=105.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH
Q 003946 464 AGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVT 543 (784)
Q Consensus 464 ~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 543 (784)
.|++++|.+.|++..+.. +.+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 367788888888877655 4556777788888888888888888888887764 235777888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc---CcHHHHHHHHHHH
Q 003946 544 ALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN---HEAGLMAKLLQEV 620 (784)
Q Consensus 544 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~ 620 (784)
..+++..+.. ..+...|..+...|...|++++|++.+++..+.. |.+...+..+...+... |+.++|.+.++..
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8888887663 2356778888888888888888888888877765 66677778888888888 8888888888877
Q ss_pred HhcCC
Q 003946 621 KEGQR 625 (784)
Q Consensus 621 ~~~~~ 625 (784)
.+.++
T Consensus 155 l~~~p 159 (568)
T 2vsy_A 155 VAQGV 159 (568)
T ss_dssp HHHTC
T ss_pred HhcCC
Confidence 77553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.4e-05 Score=74.44 Aligned_cols=163 Identities=9% Similarity=-0.052 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhcCCCCCCHHHH
Q 003946 558 ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH----EAGLMAKLLQEVKEGQRIDCGVHDW 633 (784)
Q Consensus 558 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~p~~~~y 633 (784)
...+..+-..|...+++++|+..|++..+.| +...+..+...|.. + ++++|.++|+...+.+ +...+
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g----~~~a~ 88 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG----SKSGE 88 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC----CHHHH
Confidence 3333444444444444444444444444332 12333334444433 3 4555555555544332 34456
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhcccCCCCCCC
Q 003946 634 NNVIHFFCK----KRLMQDAEKALKRMRSLGHL-PNAQTFHSMVTGYAA----IGGKYTEVTELWGEMKSFASSTSMNFD 704 (784)
Q Consensus 634 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~a~~~----~g~~~~~a~~~~~~m~~~~~~~~~~p~ 704 (784)
..|...|.. .+++++|++.|++..+.|.. .+...+..|-..|.. .+ ++++|...+++..+ . ..+
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~----~--~~~ 161 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE-DDVKASEYFKGSSS----L--SRT 161 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC-CHHHHHHHHHHHHH----T--SCT
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHH----c--CCC
Confidence 666666655 66777777777777765421 015666666666766 56 77888888877765 2 224
Q ss_pred HHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 003946 705 EELLDSVLYTFVRG-G-----FFARANEVVAMMEEGKM 736 (784)
Q Consensus 705 ~~~~~~li~~~~~~-g-----~~~~A~~l~~~m~~~g~ 736 (784)
...+..|...|... | ++++|.+++++..+.|.
T Consensus 162 ~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 162 GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 44566666776653 2 77888888888777664
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.5e-05 Score=80.94 Aligned_cols=199 Identities=10% Similarity=-0.005 Sum_probs=126.3
Q ss_pred cCChhHHHHHHHhhhhC------CCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCChhhHHHHHHHHH
Q 003946 266 FETTRKAEQLLDIMPRI------GVKADS----NLLIIMAHIYERNGRREELRKLQRHIDEAV--NLSDIQFRQFYNCLL 333 (784)
Q Consensus 266 ~g~~~~A~~l~~~m~~~------g~~pd~----~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~~~~li 333 (784)
.|++++|.+++++..+. +..++. ..|......|...|++++|...|....+.. ..+......+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777776655431 112332 356666777888899999998888766541 111111122688888
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhh
Q 003946 334 SCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDR 413 (784)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (784)
.+|.+.|++++|+..|++..+... ..
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~-----------------------------------------------~~------- 109 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYV-----------------------------------------------EN------- 109 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHH-----------------------------------------------TT-------
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHH-----------------------------------------------Hc-------
Confidence 888889999999998887766321 00
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CC--CHHH
Q 003946 414 KFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQV-SH--DDAA 490 (784)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~p--~~~~ 490 (784)
+....-..+++.+...|.. |++++|+..|++........ .+ ...+
T Consensus 110 -------------------------------g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 110 -------------------------------GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp -------------------------------TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------------CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 0000012467777778877 99999998888876432000 01 1356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 491 LGHVITLCISLGWLDQAHDLLDEMHLA----GVRAS-SSVYASLLKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 491 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 550 (784)
+..+...|.+.|++++|...|++..+. +..++ ...+..+...+...|++++|...|++..
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777788888888888888888877753 11111 2255666667777788888888888876
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.5e-06 Score=77.65 Aligned_cols=141 Identities=6% Similarity=-0.093 Sum_probs=87.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 003946 461 FLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPR 540 (784)
Q Consensus 461 ~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 540 (784)
+...|++++|+..+....... +-+...+..+-..|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 344566677777776654332 2223334456677777777777777777777664 235677777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH-HHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 541 EVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHL-FKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 541 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
+|...|++..+.. +-+...|..+...|.+.|+.++|.+. +++..+.. |.++.+|......+...|
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 7777777776653 12456677777777777777665544 46655543 555555555544444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=9.7e-06 Score=90.42 Aligned_cols=154 Identities=8% Similarity=-0.060 Sum_probs=119.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 003946 501 LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHL 580 (784)
Q Consensus 501 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 580 (784)
.|++++|...|++..+.. +.+...+..+...|.+.|++++|...|++..+.. ..+...|..+...|...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 3368899999999999999999999999998764 23678899999999999999999999
Q ss_pred HHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 003946 581 FKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK---RLMQDAEKALKRMR 657 (784)
Q Consensus 581 ~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~---g~~~~A~~~~~~m~ 657 (784)
+++..+.. |.+...+..+...+.+.|++++|.+.|+...+..+ .+...+..+...|... |+.++|.+.+++..
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 99998875 77788999999999999999999999999988653 2567789999999999 99999999999998
Q ss_pred hCC
Q 003946 658 SLG 660 (784)
Q Consensus 658 ~~g 660 (784)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 863
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.8e-06 Score=75.81 Aligned_cols=56 Identities=9% Similarity=-0.111 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003946 293 IMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEM 352 (784)
Q Consensus 293 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 352 (784)
.+...|.+.|++++|.+.|+...+.++.+.. +|..+..+|.+.|++++|+..|++.
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQERDPK----AHRFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCchHHHHHHHHHH
Confidence 3334444444444444444444333222222 2444444444444444444444333
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.5e-05 Score=76.15 Aligned_cols=130 Identities=6% Similarity=-0.031 Sum_probs=87.4
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCC--CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHH
Q 003946 602 KGCAQNHEAGLMAKLLQEVKEGQRI--DCG--VHDWNNVIHFFCKKRLMQDAEKALKRMRSL-GHLPN-----AQTFHSM 671 (784)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~--~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~l 671 (784)
..+...|++++|...++...+.... .+. ..+|+.+...|...|++++|+..+++..+. ...|+ ..+|..+
T Consensus 123 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nl 202 (293)
T 2qfc_A 123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202 (293)
T ss_dssp HHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhH
Confidence 3344445555555555554432111 111 447888899999999999999999888732 01222 2577888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 003946 672 VTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD-EELLDSVLYTFVRGGFFARA-NEVVAMME 732 (784)
Q Consensus 672 l~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A-~~l~~~m~ 732 (784)
...|...| ++++|...+++..+.....+.... ..+|..+...|.+.|++++| ...+++..
T Consensus 203 g~~y~~~~-~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 203 AKALYLDS-RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 88899999 999999999987764332222222 56788899999999999999 77677654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.35 E-value=3e-05 Score=78.07 Aligned_cols=170 Identities=7% Similarity=-0.013 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCC---CC-cHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDARSAGIQLDA-----SCYEALLQSKIVQKDTPGALHLFKEMKESKIP---RS-GHQ 595 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~-~~~ 595 (784)
.+...+..+...|++++|...+++..+.....+. ..+..+...+...|++++|+..+++..+.... +. ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445566777788888888887776654321111 12333445556677888888888877653211 11 134
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHH---hcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC-H
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVK---EGQRIDC--GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLG----HLPN-A 665 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~-~ 665 (784)
+++.+...|...|++++|...|++.. +..+..+ ...+|+.+...|...|++++|++.+++..+.. .... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 77788888888888888888888776 2221111 12578899999999999999999999876531 1111 5
Q ss_pred HHHHHHHHHHHHcCCCHHHH-HHHHHHHHhc
Q 003946 666 QTFHSMVTGYAAIGGKYTEV-TELWGEMKSF 695 (784)
Q Consensus 666 ~~~~~ll~a~~~~g~~~~~a-~~~~~~m~~~ 695 (784)
.+|..+...|...| ++++| ...+++....
T Consensus 237 ~~~~~lg~~y~~~g-~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLE-YEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CcHHHHHHHHHHHHHH
Confidence 67888888999999 99999 7778776653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.30 E-value=2.1e-05 Score=71.16 Aligned_cols=58 Identities=14% Similarity=0.017 Sum_probs=23.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 528 SLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
.+...+...|++++|...|++..+.. ..+...|..+...+...|++++|+..+++..+
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 75 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE 75 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444443321 11333344444444444444444444444333
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.29 E-value=3.1e-05 Score=73.59 Aligned_cols=125 Identities=13% Similarity=-0.001 Sum_probs=70.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 529 LLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
+...+...|++++|...|++.. .|+...|..+...|...|++++|+..|++..+.. |.+...+..+...+...|
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcc
Confidence 3444445555555555554442 3444555555555555555555555555554433 444445555555555555
Q ss_pred cHHHHHHHHHHHHhcCCCC-------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003946 609 EAGLMAKLLQEVKEGQRID-------------C-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSL 659 (784)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~-------------p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 659 (784)
++++|.+.|+...+..+-. | ....|..+..+|.+.|++++|.+.|++..+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555555555432211 1 2256777788888888888888888888764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.8e-05 Score=72.91 Aligned_cols=127 Identities=11% Similarity=-0.074 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003946 493 HVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQK 572 (784)
Q Consensus 493 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 572 (784)
.+...+...|++++|...|++. +.|+..++..+...|.+.|++++|...|++..+.. ..+...|..+...|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 3444455555555555555544 23455555555556666666666666665555442 224455555555666666
Q ss_pred ChhHHHHHHHHhHhcC--------------CCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 003946 573 DTPGALHLFKEMKESK--------------IPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ 624 (784)
Q Consensus 573 ~~~~A~~~~~~m~~~~--------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 624 (784)
++++|+..|++..+.. ..|.....+..+...+.+.|++++|.+.|+...+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 6666666666555532 112233566677777777777777777777776643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00038 Score=70.38 Aligned_cols=152 Identities=7% Similarity=-0.058 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHcCCCCCHHHH
Q 003946 450 TEKIYIKLVKAFLEAG-KTKELTHFLIKAEKENLQVSHDDAALGHVITLCISL-G-WLDQAHDLLDEMHLAGVRASSSVY 526 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~~g~~~~~~~~ 526 (784)
+..+|+.--..+...| .+++++.+++.+.... +-+..+|+.-...+.+. + +++++.++++.+.+... -|..+|
T Consensus 87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n---PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp-kNy~AW 162 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN---LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP-KNYHTW 162 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT-TCHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCHHHH
Confidence 4456776666666677 4888888888888776 56666777777666666 6 77888888888887653 377777
Q ss_pred HHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------hhHHHHHHHHhHhcCCCC
Q 003946 527 ASLLKAYIEANRPR--------EVTALLRDARSAGIQLDASCYEALLQSKIVQKD-------TPGALHLFKEMKESKIPR 591 (784)
Q Consensus 527 ~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~~ 591 (784)
+--.-.+.+.|..+ ++++.++++.+... -|...|+.--..+.+.+. ++++++.++++.... |
T Consensus 163 ~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~--P 239 (349)
T 3q7a_A 163 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI--P 239 (349)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC--C
Confidence 76655555555555 77888888777653 377777777777666665 567777777776654 6
Q ss_pred CcHHHHHHHHHHHHhcC
Q 003946 592 SGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 592 ~~~~~~~~ll~~~~~~~ 608 (784)
.+...|+.+-..+.+.|
T Consensus 240 ~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 240 HNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 66667766666555555
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00086 Score=67.78 Aligned_cols=148 Identities=11% Similarity=0.004 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLG-WLDQAHDLLDEMHLAGVRASSSVYASLLKA 532 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 532 (784)
++.+-....+.+..++|++++.++.... +-+..+|+.--..+...| .++++..+++.+..... -+..+|+.--..
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n---P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wl 132 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN---PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 3333333444455578999999999887 566677887777777788 59999999999988753 378888887777
Q ss_pred HHHc-C-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh--------HHHHHHHHhHhcCCCCCcHHHHHHHHH
Q 003946 533 YIEA-N-RPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTP--------GALHLFKEMKESKIPRSGHQEFEMLVK 602 (784)
Q Consensus 533 ~~~~-g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~~ll~ 602 (784)
+.+. + ++++++.+++.+.+.. ..|...|+.-.-.+.+.|..+ ++++.++++.+.. |.+..+|+....
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~ 209 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWY 209 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 7776 6 7888888888888764 347777776655555545444 6666666666654 444545555554
Q ss_pred HHHhcC
Q 003946 603 GCAQNH 608 (784)
Q Consensus 603 ~~~~~~ 608 (784)
.+.+.+
T Consensus 210 lL~~l~ 215 (349)
T 3q7a_A 210 LRVSRP 215 (349)
T ss_dssp HHTTST
T ss_pred HHHhcc
Confidence 444444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.21 E-value=7.3e-05 Score=63.41 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
...|..+...+...|++++|.+.|.++.+.. +.+..++..+...+...|++++|..+|+.+.+.. +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 3455555555556666666666665555543 3344455555555555555555555555555442 22444555555
Q ss_pred HHHHHcCChHHHHHHHHHHHHc
Q 003946 531 KAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
..|...|++++|...|+++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHh
Confidence 5555555555555555555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.21 E-value=8.7e-05 Score=62.93 Aligned_cols=117 Identities=14% Similarity=0.081 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 488 DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS 567 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 567 (784)
...+..+...+...|++++|...|+++.+.. +.+..++..+...|.+.|++++|..+|+++.+.. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678888899999999999999999998874 3478899999999999999999999999998764 3477889999999
Q ss_pred HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
+...|++++|...++++.+.. |.+...+..+...+...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcc
Confidence 999999999999999998865 666777777777665543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.20 E-value=7.9e-05 Score=67.23 Aligned_cols=129 Identities=9% Similarity=-0.032 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLK 531 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 531 (784)
..|..+...+...|++++|...|.+..... +.+..++..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 567778888889999999999999988776 5567778888888889999999999999888764 346778888888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHcCChhHHHHHHHHhH
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDASCYEA--LLQSKIVQKDTPGALHLFKEMK 585 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--li~~~~~~g~~~~A~~~~~~m~ 585 (784)
.|...|++++|...|++..+... .+...+.. ....+...|++++|+..+....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88889999999999988876532 24444433 3333666777888887776543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.5e-05 Score=73.49 Aligned_cols=103 Identities=9% Similarity=-0.035 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC
Q 003946 630 VHDWNNVIHFFCKKRLMQDAEKALKRMRSL----GHLP--NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF 703 (784)
Q Consensus 630 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p--~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p 703 (784)
..++..+...|...|++++|.+.+++..+. +-.| ....+..+...+...| ++++|...+++..+.....+..+
T Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~ 144 (203)
T 3gw4_A 66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVYAQQADDQV 144 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhccchH
Confidence 345666667777777777777777665542 1111 1234556666677777 77777777777654322222111
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 704 -DEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 704 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
...++..+...+...|++++|.+.+++..+
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 123456677777777777777777766653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00011 Score=73.96 Aligned_cols=129 Identities=8% Similarity=-0.063 Sum_probs=76.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHH
Q 003946 456 KLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDA----ALGHVITLCISLGWLDQAHDLLDEMHLAGVR-AS----SSVY 526 (784)
Q Consensus 456 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~ 526 (784)
..+..+...|++++|..++.+...... ..|+.. .+..+...+...|++++|...|++..+.... ++ ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 345667777888888888877765431 122221 2223445555666777777777777763222 22 3357
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH----c-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 003946 527 ASLLKAYIEANRPREVTALLRDARS----A-GIQLD-ASCYEALLQSKIVQKDTPGALHLFKEMK 585 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~ 585 (784)
+.+...|...|++++|...|++..+ . +..+. ..+|..+...|.+.|++++|+..+++..
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7777777777777777777777653 1 11111 1255666666666666666666666554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.10 E-value=4.7e-05 Score=71.50 Aligned_cols=122 Identities=10% Similarity=-0.031 Sum_probs=72.2
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHc
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA----GVR-ASSSVYASLLKAYIEA 536 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~ 536 (784)
...|++++|.+.++.... . ......++..+...+...|++++|...+++..+. +.. ....++..+...|...
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-H--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHT-S--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcC-C--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 356777777775544432 2 1334556777777777788888888777776652 111 1245566677777777
Q ss_pred CChHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 537 NRPREVTALLRDARSA----GIQL--DASCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 537 g~~~~A~~~~~~m~~~----g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
|++++|...+++..+. +-.| ....+..+...+...|++++|...+++...
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777777765432 1011 123456666666677777777777766543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00014 Score=62.16 Aligned_cols=120 Identities=14% Similarity=0.062 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+...+...|++++|...|.+..... +.+...+..+...+...|++++|...++...+.. +.+...+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 86 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN---PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHH
Confidence 44677778888888888888888888887765 4566777778888888888888888888887763 3357777778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDT 574 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 574 (784)
...|.+.|++++|...|++..+.. ..+...+..+...+...|+.
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 888888888888888888876653 23556666666666665543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00013 Score=62.57 Aligned_cols=97 Identities=10% Similarity=0.000 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLK 531 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 531 (784)
..|......|.+.|++++|+..|.+..+.. +.+..+|..+..++.+.|++++|...|+...+.. +.+...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 455555566666666666666666655554 4455555555566666666666666666655543 224555555555
Q ss_pred HHHHcCChHHHHHHHHHHHHc
Q 003946 532 AYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~ 552 (784)
+|...|++++|...|++..+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 555666666666665555543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.07 E-value=3.4e-05 Score=77.08 Aligned_cols=194 Identities=10% Similarity=0.007 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHH
Q 003946 522 SSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLV 601 (784)
Q Consensus 522 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll 601 (784)
+...+..+...+.+.|++++|...|++..+.. ..+...|..+...|...|++++|+..+++..+.. |.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 34455555666666666666666666665542 1255566666666666666666666666665543 55566666666
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCC
Q 003946 602 KGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGK 681 (784)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~ 681 (784)
.++...|++++|...|+...+..+-.+. .+...+....+ ..++.. +.........++...... +..+. .| +
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~-l~~l~-~~-~ 150 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRL--NFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSY-LTRLI-AA-E 150 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTC--CCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHH-HHHHH-HH-H
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchh--hHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHH-HHHHH-HH-H
Confidence 6666666666666666665543211110 11111111111 111111 112222223334333333 33333 46 7
Q ss_pred HHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhc-CChHHHHHHHHHHHh
Q 003946 682 YTEVTELWGEMKSFASSTSMNFD-EELLDSVLYTFVRG-GFFARANEVVAMMEE 733 (784)
Q Consensus 682 ~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~li~~~~~~-g~~~~A~~l~~~m~~ 733 (784)
+++|.+.+++..+ ..|+ ......+...+.+. +++++|.++|.+..+
T Consensus 151 ~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 151 RERELEECQRNHE------GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHTTTSGGGT------TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhhhc------cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888777776655 2344 33344444445554 567788888877764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.002 Score=64.70 Aligned_cols=222 Identities=9% Similarity=-0.010 Sum_probs=161.3
Q ss_pred HHHHcCChH-HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 460 AFLEAGKTK-ELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW----------LDQAHDLLDEMHLAGVRASSSVYAS 528 (784)
Q Consensus 460 ~~~~~g~~~-~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~ 528 (784)
...+.|.++ +|+.++..+...+ +-+..+|+.--..+...+. ++++..+++.+.... +-+..+|+.
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~h 113 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 113 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 334666665 7999999999876 4455556654444433333 678899999998875 348888988
Q ss_pred HHHHHHHcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH
Q 003946 529 LLKAYIEANR--PREVTALLRDARSAGIQLDASCYEALLQSKIVQKD-TPGALHLFKEMKESKIPRSGHQEFEMLVKGCA 605 (784)
Q Consensus 529 li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 605 (784)
-...+.+.|+ +++++.+++.+.+.. ..|...|+.---.+...|. ++++++.++++.+.. |.+..+|+.....+.
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
Confidence 8888888884 889999999998876 3588889888888888887 589999999999876 777888888777776
Q ss_pred hc--------------CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCC
Q 003946 606 QN--------------HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK-----------RLMQDAEKALKRMRSLG 660 (784)
Q Consensus 606 ~~--------------~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~-----------g~~~~A~~~~~~m~~~g 660 (784)
+. +.++++.+.++......+ -|...|+-+-..+.+. +.++++++.++++.+
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P--~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle-- 266 (331)
T 3dss_A 191 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP--NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE-- 266 (331)
T ss_dssp HHSCCC------CCCHHHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--
T ss_pred HhhhccccccccccchHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--
Confidence 65 457888888888887553 2667777666666655 457889999999887
Q ss_pred CCCCHHHHHHHHHH-----HHHcCCCHHHHHHHHHHHHh
Q 003946 661 HLPNAQTFHSMVTG-----YAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 661 ~~p~~~~~~~ll~a-----~~~~g~~~~~a~~~~~~m~~ 694 (784)
+.||. .|..+-.+ ....+ ..+++...+.++.+
T Consensus 267 ~~pd~-~w~l~~~~~~~~~~~~~~-~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 267 LEPEN-KWCLLTIILLMRALDPLL-YEKETLQYFSTLKA 303 (331)
T ss_dssp HCTTC-HHHHHHHHHHHHHHCTTT-THHHHHHHHHHHHH
T ss_pred hCccc-chHHHHHHHHHHhhcccc-cHHHHHHHHHHHHH
Confidence 46764 34322222 12345 67777888888776
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00014 Score=62.27 Aligned_cols=25 Identities=12% Similarity=-0.049 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHh
Q 003946 560 CYEALLQSKIVQKDTPGALHLFKEM 584 (784)
Q Consensus 560 t~~~li~~~~~~g~~~~A~~~~~~m 584 (784)
.|..+..+|.+.|++++|+..|++.
T Consensus 49 ~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 49 LYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHhhccHHHHHHHHHHH
Confidence 3333333333333333333333333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.06 E-value=5.7e-05 Score=73.74 Aligned_cols=192 Identities=7% Similarity=-0.122 Sum_probs=133.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCCC-------------
Q 003946 463 EAGKTKELTHFLIKAEKENLQVSHDDAALGHV-------ITLCISLGWLDQAHDLLDEMHLAGVRAS------------- 522 (784)
Q Consensus 463 ~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~~~------------- 522 (784)
..++...|.+.|.+..+.. +-....|..+ ...+.+.++..++...+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d---P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD---ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHhC---hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccc
Confidence 6899999999999999887 5566667766 3455554444444444433332 2221
Q ss_pred ---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCC-
Q 003946 523 ---------SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRS- 592 (784)
Q Consensus 523 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~- 592 (784)
...+-.+...+...|++++|.++|+.+... .|+......+-..+.+.+++++|+..|+...... ++
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~ 168 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKF 168 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--Ccc
Confidence 233445677888999999999999988765 3555466666667888999999999998554422 11
Q ss_pred -cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003946 593 -GHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG--VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQ 666 (784)
Q Consensus 593 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 666 (784)
....+..+..++...|++++|+..|++..... ..|. .........++.+.|+.++|..+|+++... .|+..
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~ 242 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPK 242 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH
Confidence 13367778888888889999998888887432 2243 235666777788888888999888888874 56633
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=3.1e-05 Score=68.70 Aligned_cols=95 Identities=11% Similarity=-0.057 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGC 604 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~ 604 (784)
.+..+...+.+.|++++|...|++..+.. ..+...|..+-.+|...|++++|+..|++..... |.+...+..+..++
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHH
Confidence 33444444555555555555555544432 1244444444445555555555555555544433 33344444444444
Q ss_pred HhcCcHHHHHHHHHHHHh
Q 003946 605 AQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 605 ~~~~~~~~a~~~~~~~~~ 622 (784)
...|++++|.+.|+...+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.03 E-value=6.6e-05 Score=66.62 Aligned_cols=94 Identities=6% Similarity=-0.156 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 003946 561 YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFF 640 (784)
Q Consensus 561 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~ 640 (784)
+..+-..+.+.|++++|+..|++..... |.+...|..+..+|...|++++|...|+...+.++- +...|..+..+|
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~--~~~~~~~lg~~~ 114 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN--DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHH
Confidence 3333334444444444444444444332 333444444444444444444444444444333221 223344444444
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 003946 641 CKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 641 ~~~g~~~~A~~~~~~m~~ 658 (784)
.+.|++++|.+.|++..+
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00015 Score=61.98 Aligned_cols=117 Identities=9% Similarity=-0.028 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003946 488 DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS 567 (784)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 567 (784)
...+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++..+.. ..+...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3345555556666666666666666665543 2245556666666666666666666666655442 2234555555556
Q ss_pred HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
+...|++++|...|++..+.. |.+...+..+...+...|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHh
Confidence 666666666666666555543 333444444444444333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.03 E-value=9.9e-05 Score=67.67 Aligned_cols=122 Identities=11% Similarity=0.128 Sum_probs=73.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCh-
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKA-YIEANRP- 539 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~- 539 (784)
...|++++|...+.+..+.. +.+...+..+...|...|++++|...|+...+.. +.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 46667777777777766654 4555666666677777777777777777766543 2255566666666 5566666
Q ss_pred -HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 540 -REVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 540 -~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
++|...|++..+.. ..+...+..+...|...|++++|+..|++..+..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 67777776666543 2245556666666666666666666666666543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00031 Score=68.61 Aligned_cols=198 Identities=7% Similarity=-0.077 Sum_probs=123.7
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCChhHHHHHHHHhHh------------cCCC-----
Q 003946 535 EANRPREVTALLRDARSAGIQLDASCYEAL-------LQSKIVQKDTPGALHLFKEMKE------------SKIP----- 590 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-------i~~~~~~g~~~~A~~~~~~m~~------------~~~~----- 590 (784)
..++...|.+.|.+..+.. +-....|+.+ ...+...++..+++..+..-.. .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 3566666666666665542 1234455555 3444444444444444443332 1100
Q ss_pred --CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---
Q 003946 591 --RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNA--- 665 (784)
Q Consensus 591 --~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--- 665 (784)
..-....-.+...+...|++++|.++|+.+...+ |+....-.+...+.+.|++++|+..|+..... |+.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~ 170 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLA 170 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccH
Confidence 0112234455666777788888888887776543 43335555666788899999999999755432 322
Q ss_pred -HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 003946 666 -QTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD--EELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYK 742 (784)
Q Consensus 666 -~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 742 (784)
..+..+-.++...| ++++|+..|++... ....|. .........++.+.|+.++|..+|+++... .|+...
T Consensus 171 ~~a~~~LG~al~~LG-~~~eAl~~l~~a~~----g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~ 243 (282)
T 4f3v_A 171 GAAGVAHGVAAANLA-LFTEAERRLTEAND----SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKV 243 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHT----STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHhc----CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHH
Confidence 35667778888888 99999999998875 233243 446677788888999999999999999884 577444
Q ss_pred HHHH
Q 003946 743 YRTL 746 (784)
Q Consensus 743 ~~~l 746 (784)
+..|
T Consensus 244 ~~aL 247 (282)
T 4f3v_A 244 AAAL 247 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00013 Score=62.87 Aligned_cols=23 Identities=4% Similarity=-0.048 Sum_probs=8.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 003946 527 ASLLKAYIEANRPREVTALLRDA 549 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m 549 (784)
..+...+...|++++|...|++.
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~a 42 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEA 42 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333333
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.01 E-value=4.2e-05 Score=76.41 Aligned_cols=191 Identities=9% Similarity=-0.012 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003946 491 LGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIV 570 (784)
Q Consensus 491 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 570 (784)
+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...+++..+.. ..+...+..+..+|..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344444444444555554444444432 1134444444444555555555555555444332 1233444444445555
Q ss_pred cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003946 571 QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAE 650 (784)
Q Consensus 571 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~ 650 (784)
.|++++|+..|++..+.. |.+...+...+....+ ...+.......... ..++......+.. + ..|+.++|+
T Consensus 85 ~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~i~~~l~~-l-~~~~~~~A~ 155 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRWNSIEERR--IHQESELHSYLTR-L-IAAEREREL 155 (281)
T ss_dssp TTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHHHHHHHTC--CCCCCHHHHHHHH-H-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHHHHHHHHH--HhhhHHHHHHHHH-H-HHHHHHHHH
Confidence 555555555554443321 1100001111111110 00111111111111 2233333333322 2 268888898
Q ss_pred HHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 651 KALKRMRSLGHLPNAQTFH-SMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 651 ~~~~~m~~~g~~p~~~~~~-~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
+.+++..+. .|+..... .+-..+...++.+++|.++|+++.+
T Consensus 156 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888877763 56654433 3333344442278889999988765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00013 Score=74.96 Aligned_cols=87 Identities=8% Similarity=-0.062 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIH 638 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 638 (784)
..|..+..+|.+.|++++|+..+++..+.. |.+...+..+..+|...|++++|...|+...+..+ .+...+..+..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~l~~ 272 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 445555555555555555555555555433 44444444444444445555555554444444321 12334555555
Q ss_pred HHHhcCCHHHH
Q 003946 639 FFCKKRLMQDA 649 (784)
Q Consensus 639 ~~~~~g~~~~A 649 (784)
++.+.|+.++|
T Consensus 273 ~~~~~~~~~~a 283 (336)
T 1p5q_A 273 CQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00011 Score=65.09 Aligned_cols=99 Identities=10% Similarity=-0.010 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|...|+...+... -+...|..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD---FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHH
Confidence 33456666666667777777777777766655 45566666666666677777777777776666542 245566666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc
Q 003946 530 LKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
..+|.+.|++++|...|++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66777777777777777766654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00015 Score=62.36 Aligned_cols=118 Identities=10% Similarity=-0.016 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 449 PTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYAS 528 (784)
Q Consensus 449 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 528 (784)
.+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN---PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 356788888888899999999999999888765 4567778888888888888888888888888764 336778888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003946 529 LLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQ 571 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 571 (784)
+...|.+.|++++|...|++..+... .+...+..+...+...
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHh
Confidence 88888888888888888888766521 1334455555554443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00015 Score=66.40 Aligned_cols=127 Identities=14% Similarity=0.047 Sum_probs=90.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCh--h
Q 003946 499 ISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQS-KIVQKDT--P 575 (784)
Q Consensus 499 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g~~--~ 575 (784)
...|++++|...++...+.. +.+...|..+...|...|++++|...|++..+.. ..+...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34577778888887777654 3467778888888888888888888888876653 2356667777777 6677887 8
Q ss_pred HHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC
Q 003946 576 GALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG 629 (784)
Q Consensus 576 ~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 629 (784)
+|+..+++..+.. |.+...+..+...+...|++++|...|+...+..+..++
T Consensus 99 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 8888888887765 666777888888888888888888888888776543333
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00022 Score=73.24 Aligned_cols=138 Identities=9% Similarity=-0.049 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+...|.+.|++++|...|.+..... +.+.. + ..+.+.++ .. ....+|..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-~-----------~~~~~~~~----~~----~~~~~~~nl 202 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL---EYESS-F-----------SNEEAQKA----QA----LRLASHLNL 202 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCCC-C-----------CSHHHHHH----HH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh---hcccc-C-----------ChHHHHHH----HH----HHHHHHHHH
Confidence 45677777778888888888888888877654 12200 0 00000000 00 012344445
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
..+|.+.|++++|...|++..+.. ..+...|..+..+|...|++++|+..|++..+.. |.+...+..+...+.+.|+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHH
Confidence 555555555555555555554432 1244455555555555555555555555555433 4445555555555555555
Q ss_pred HHHH
Q 003946 610 AGLM 613 (784)
Q Consensus 610 ~~~a 613 (784)
.+++
T Consensus 280 ~~~a 283 (336)
T 1p5q_A 280 QLAR 283 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00017 Score=61.87 Aligned_cols=102 Identities=14% Similarity=0.031 Sum_probs=47.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-C----HHHHHHHH
Q 003946 563 ALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC-G----VHDWNNVI 637 (784)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~----~~~y~~li 637 (784)
.+-..+.+.|++++|++.|++..+.. |.+...|..+..+|.+.|++++|.+.++...+..+-.+ + ..+|..+.
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 33334444444444444444444332 33344444444444444444444444444333211000 0 12455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 003946 638 HFFCKKRLMQDAEKALKRMRSLGHLPNAQTF 668 (784)
Q Consensus 638 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 668 (784)
..|...|++++|++.|++.+. ..||....
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 666667777777777766655 24554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0002 Score=64.64 Aligned_cols=94 Identities=9% Similarity=-0.104 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA 605 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~ 605 (784)
+..+...|.+.|++++|...|++..+.. .-+...|..+..+|...|++++|+..|++..+.. |.+...|..+..++.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 3334444444444444444444443332 1133344444444444444444444444444332 333444444444444
Q ss_pred hcCcHHHHHHHHHHHHh
Q 003946 606 QNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 606 ~~~~~~~a~~~~~~~~~ 622 (784)
..|++++|.+.|+...+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=4e-05 Score=67.99 Aligned_cols=96 Identities=9% Similarity=-0.101 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIH 638 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 638 (784)
..+..+...+...|++++|+..|++..... |.+...|..+..+|...|++++|...|+......+- +...|..+..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~ 97 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX--EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CchHHHHHHH
Confidence 345555666666777777777777666654 555666666666666666666666666666654321 3445566666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 003946 639 FFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 639 ~~~~~g~~~~A~~~~~~m~~ 658 (784)
+|...|++++|.+.|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00037 Score=59.47 Aligned_cols=91 Identities=12% Similarity=0.019 Sum_probs=38.5
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 003946 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK 643 (784)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~ 643 (784)
+-..+.+.|++++|+..|++..+.. |.+...|..+..++.+.|++++|...++...+.++ .+...|..+..+|...
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHH
Confidence 3333444444444444444444332 33333444444444444444444444444333221 1233444444455555
Q ss_pred CCHHHHHHHHHHHHh
Q 003946 644 RLMQDAEKALKRMRS 658 (784)
Q Consensus 644 g~~~~A~~~~~~m~~ 658 (784)
|++++|.+.|++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 555555555544443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=4.6e-05 Score=71.49 Aligned_cols=132 Identities=9% Similarity=-0.041 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG--------------VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGH 661 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--------------~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 661 (784)
.+..+...+...|++++|...|+......+..|+ ...|..+..+|.+.|++++|+..+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3444444555555555555555555443222121 2567788888888888888888888887752
Q ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHhC
Q 003946 662 LPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARAN-EVVAMMEEG 734 (784)
Q Consensus 662 ~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~ 734 (784)
..+...|..+..+|...| ++++|...+++..+.. +-+...+..+...+...|+.+++. ..+..|...
T Consensus 119 p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFG-FLEEAKENLYKAASLN-----PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 235677777888888888 8888888888887631 125667777777777777766665 455555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00079 Score=56.11 Aligned_cols=90 Identities=12% Similarity=-0.007 Sum_probs=36.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 494 VITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKD 573 (784)
Q Consensus 494 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 573 (784)
+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++..+.. ..+...+..+...+...|+
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhh
Confidence 3333444444444444444443332 1133334444444444444444444444443331 1123334444444444444
Q ss_pred hhHHHHHHHHhH
Q 003946 574 TPGALHLFKEMK 585 (784)
Q Consensus 574 ~~~A~~~~~~m~ 585 (784)
+++|...+++..
T Consensus 88 ~~~A~~~~~~~~ 99 (118)
T 1elw_A 88 FEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00027 Score=61.96 Aligned_cols=90 Identities=9% Similarity=-0.099 Sum_probs=38.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 529 LLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
+...+.+.|++++|...|++..+.. +.+...|..+-.+|...|++++|+..|++..... |.++..+..+..++...|
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcC
Confidence 3334444444444444444443332 1233344444444444444444444444444432 333334444444444444
Q ss_pred cHHHHHHHHHHHH
Q 003946 609 EAGLMAKLLQEVK 621 (784)
Q Consensus 609 ~~~~a~~~~~~~~ 621 (784)
++++|.+.|+...
T Consensus 101 ~~~~A~~~~~~al 113 (142)
T 2xcb_A 101 DLDGAESGFYSAR 113 (142)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00048 Score=59.68 Aligned_cols=98 Identities=11% Similarity=-0.022 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003946 594 HQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVT 673 (784)
Q Consensus 594 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 673 (784)
...+..+...+...|++++|...|+......+ .+...|..+...|...|++++|...+++..+.. +.+...|..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34444444444445555555555444444322 134455555666666666666666666655531 113455555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHhc
Q 003946 674 GYAAIGGKYTEVTELWGEMKSF 695 (784)
Q Consensus 674 a~~~~g~~~~~a~~~~~~m~~~ 695 (784)
++...| ++++|...+++..+.
T Consensus 86 ~~~~~~-~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEME-SYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHh-hHHHHHHHHHHHHHH
Confidence 666666 666666666655553
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00041 Score=74.05 Aligned_cols=102 Identities=9% Similarity=-0.050 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC
Q 003946 630 VHDWNNVIHFFCKKRLMQDAEKALKRMRSL----GHLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD 704 (784)
Q Consensus 630 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~ 704 (784)
..++..+...|...|++++|..++++.... +-+|. ...|..++..|...| ++++|..++++...........|.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~ 213 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR-NLAKSKASLTAARTAANSIYCPTQ 213 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHhhcCCCchH
Confidence 345667777777777777777777766542 11221 345666777777777 888887777776553322222111
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003946 705 --EELLDSVLYTFVRGGFFARANEVVAMME 732 (784)
Q Consensus 705 --~~~~~~li~~~~~~g~~~~A~~l~~~m~ 732 (784)
...+..+...+...|++++|.+.+.+..
T Consensus 214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 214 TVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2456666677777777777777666554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00084 Score=55.93 Aligned_cols=99 Identities=12% Similarity=-0.030 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
...|..+...+...|++++|...|.+..... +.+...+..+...+...|++++|...++...+.. +.+...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 3567788889999999999999999998876 5677888889999999999999999999999874 33688899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcC
Q 003946 531 KAYIEANRPREVTALLRDARSAG 553 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g 553 (784)
.+|...|++++|...+++..+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999999998763
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0007 Score=57.69 Aligned_cols=97 Identities=11% Similarity=-0.018 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLK 531 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 531 (784)
..|..+...+.+.|++++|+..|.+..+.. +.+...|..+..++.+.|++++|...|+...+.. +.+...|..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 456667777778888888888888877765 5566777777788888888888888888877764 235677777777
Q ss_pred HHHHcCChHHHHHHHHHHHHc
Q 003946 532 AYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~ 552 (784)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888888888888888777654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=5.8e-05 Score=70.82 Aligned_cols=95 Identities=7% Similarity=-0.103 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003946 491 LGHVITLCISLGWLDQAHDLLDEMHLAGVR-AS--------------SSVYASLLKAYIEANRPREVTALLRDARSAGIQ 555 (784)
Q Consensus 491 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 555 (784)
+..+...+.+.|++++|...|++..+.... |+ ..++..+..+|.+.|++++|...+++..+.. .
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c
Confidence 444444555555555555555555543211 00 1344444444444444444444444444332 1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 556 LDASCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 556 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
.+...|..+..+|...|++++|+..|++..+
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2333444444444444444444444444433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.033 Score=55.90 Aligned_cols=117 Identities=6% Similarity=-0.129 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHH
Q 003946 449 PTEKIYIKLVKAFLEAG--KTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW-LDQAHDLLDEMHLAGVRASSSV 525 (784)
Q Consensus 449 p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~ 525 (784)
-+..+|+--...+...+ .+++++.++.++.... +-+...|+.-.-.+...|. ++++.+.++.+.+..+ -|...
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d---prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SA 181 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSS 181 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHH
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHH
Confidence 36678887777777777 4789999999998887 6778888888777778887 6889999999888764 37888
Q ss_pred HHHHHHHHHHc--------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003946 526 YASLLKAYIEA--------------NRPREVTALLRDARSAGIQLDASCYEALLQSKIV 570 (784)
Q Consensus 526 ~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 570 (784)
|+.....+.+. +.++++++.+....... +-|...|+-+-..+.+
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGA 239 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 88776666655 34666777777766553 2355666554444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.01 Score=63.05 Aligned_cols=205 Identities=11% Similarity=0.036 Sum_probs=142.0
Q ss_pred HHhhhcCChhHHHHHHHhhhhCCCCCCh----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCChh
Q 003946 261 AGCLLFETTRKAEQLLDIMPRIGVKADS----------------NLLIIMAHIYERNGRREELRKLQRHIDEAV-NLSDI 323 (784)
Q Consensus 261 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~----------------~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~~~~ 323 (784)
..+.+.|++++|++.|....+..-.... ..+..+...|.+.|++++|.+.+..+.+.. .....
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4456789999999999998865321111 247788999999999999999998876641 21111
Q ss_pred h-HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCcccccccccccc
Q 003946 324 Q-FRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENH 402 (784)
Q Consensus 324 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (784)
. ...+.+.+-..+...|+.++|..++........
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------------------- 126 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAK--------------------------------------------- 126 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 1 111344455555667899999999988776432
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003946 403 ILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKEN 481 (784)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 481 (784)
..+..+ -..++..+...|...|++++|..++.+....-
T Consensus 127 -----------------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 127 -----------------------------------------REKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp -----------------------------------------HSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------HhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 000111 23577889999999999999999999876532
Q ss_pred C--CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003946 482 L--QVSH-DDAALGHVITLCISLGWLDQAHDLLDEMHLA--GVRAS----SSVYASLLKAYIEANRPREVTALLRDARS 551 (784)
Q Consensus 482 ~--~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 551 (784)
. .-.+ ...++..++..|...|++++|..+++..... .+..+ ...+..+...+...|++++|...|.+..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 0112 2346888889999999999999999887643 12212 34566677777888999999988877743
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00039 Score=59.42 Aligned_cols=109 Identities=9% Similarity=0.114 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGV--RAS----SSV 525 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~ 525 (784)
..|..+...+...|++++|...|.+..... +.+...+..+...+...|++++|...++...+... .++ ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 456777778888888888888888887765 55667777788888888888888888888776531 122 667
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALL 565 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 565 (784)
+..+...|.+.|++++|...|++..+. .|+...+..+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 777778888888888888888887765 35554444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00073 Score=57.82 Aligned_cols=105 Identities=10% Similarity=0.006 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAG--VRAS----SSV 525 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~----~~~ 525 (784)
..+..+-..+.+.|++++|+..|.+..+.. +-+...|..+..+|.+.|++++|.+.++...+.. ..++ ..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 567778888888999999999998888776 5667778888888888999999988888877542 1112 235
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDASCY 561 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 561 (784)
|..+..+|...|++++|+..|++..+. .||....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 666777788888888888888887654 4555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00063 Score=58.05 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=46.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC-CCC----HHHHHHHH
Q 003946 563 ALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRI-DCG----VHDWNNVI 637 (784)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~----~~~y~~li 637 (784)
.+...+...|++++|+..|++..+.. |.+...+..+...+...|++++|...++......+. .++ ...|..+.
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 33333444444444444444443332 233333334444444444444444444433332110 011 44556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003946 638 HFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHS 670 (784)
Q Consensus 638 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 670 (784)
..|...|++++|.+.|++..+. .|+...+..
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 117 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKK 117 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 6666666666666666666653 345444333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00029 Score=58.24 Aligned_cols=55 Identities=16% Similarity=0.053 Sum_probs=21.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 495 ITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 495 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 550 (784)
...+...|++++|...|+...+.. +.+...+..+...|...|++++|...|++..
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 333334444444444444433332 1123333333333444444444444444333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0011 Score=57.18 Aligned_cols=100 Identities=15% Similarity=-0.013 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYA 527 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 527 (784)
..+...|..+...+...|++++|...|.+..... +.+...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 81 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHF 81 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHH
Confidence 3456677777777777777777777777776665 4456667777777777777777777777777654 23566677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 003946 528 SLLKAYIEANRPREVTALLRDARS 551 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~ 551 (784)
.+..+|...|++++|...|++..+
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777777776654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00034 Score=62.41 Aligned_cols=136 Identities=13% Similarity=-0.006 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHH
Q 003946 597 FEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG----VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGH-LPN----AQT 667 (784)
Q Consensus 597 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~ 667 (784)
+..+...+...|++++|...++...+.....++ ..++..+...|...|++++|.+.+++..+..- .++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444455555555544443322110011 24678888888899999999998888765310 011 446
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 668 FHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DEELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 668 ~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
+..+...+...| ++++|...+++..+.....+..+ ....+..+...|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 667777888888 99999999988776433322222 245678888999999999999999988764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0013 Score=57.49 Aligned_cols=97 Identities=8% Similarity=-0.123 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003946 487 DDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS----SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYE 562 (784)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 562 (784)
+...+..+...+...|++++|...|++..+.. |+ ...+..+...|...|++++|...+++..+.. ..+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34444445555555555555555555555432 33 3444445555555555555555555544432 11334444
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHh
Q 003946 563 ALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
.+..++...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444455555555555554444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00074 Score=59.09 Aligned_cols=99 Identities=14% Similarity=-0.014 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...+..+...+.+.|++++|...|.+..... +.+...|..+..++.+.|++++|...|+...+.. +.+...+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 92 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD---HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 33456666777788888888888888887766 5567777777788888888888888888887764 2356677777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc
Q 003946 530 LKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
..+|...|++++|...|++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 78888888888888888877654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00032 Score=59.51 Aligned_cols=98 Identities=9% Similarity=-0.082 Sum_probs=82.5
Q ss_pred hhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 003946 254 NTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLL 333 (784)
Q Consensus 254 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li 333 (784)
..+..+-..+.+.|++++|+..|+...+.. +.+...+..+..++.+.|++++|...|+...+.++.+.. .|..+.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~----~~~~la 92 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA----VHAALA 92 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHH
Confidence 346666778889999999999999998854 336678888999999999999999999999987665554 599999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHH
Q 003946 334 SCHLKFGDLNSASKMVLEMLQRA 356 (784)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~~ 356 (784)
.+|.+.|++++|+..|++..+.+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999887643
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00046 Score=57.00 Aligned_cols=100 Identities=14% Similarity=0.012 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRA--SSSVYA 527 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~ 527 (784)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+.. +. +...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD---PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence 44567788888999999999999999998876 5677888899999999999999999999999864 33 588899
Q ss_pred HHHHHHHHc-CChHHHHHHHHHHHHcC
Q 003946 528 SLLKAYIEA-NRPREVTALLRDARSAG 553 (784)
Q Consensus 528 ~li~~~~~~-g~~~~A~~~~~~m~~~g 553 (784)
.+...|.+. |++++|.+.+++..+..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999999 99999999999998764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0017 Score=56.79 Aligned_cols=100 Identities=10% Similarity=-0.041 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003946 448 QPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHD----DAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASS 523 (784)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 523 (784)
..+...|..+...+...|++++|...|++..+.. |+ ...+..+...|...|++++|...++...+.. +.+.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 99 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDV 99 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCH
Confidence 4477899999999999999999999999998764 55 5778888889999999999999999988864 3368
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003946 524 SVYASLLKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
..+..+..+|...|++++|...|++..+.
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88889999999999999999999999876
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0011 Score=59.76 Aligned_cols=99 Identities=9% Similarity=-0.002 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
+...|..+...+.+.|++++|+..|.+..+.. +.+...|..+..+|.+.|++++|...|+...+.. +.+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45677778888888888888888888888765 4567778888888888888888888888888764 2357778888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc
Q 003946 530 LKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
..+|...|++++|...|++..+.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 88888888888888888887654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.60 E-value=9.6e-05 Score=62.35 Aligned_cols=59 Identities=8% Similarity=-0.129 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 003946 561 YEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVK 621 (784)
Q Consensus 561 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 621 (784)
|..+...|...|++++|+..|++..+.. |.+...+..+..++.+.|++++|...|+...
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444444332 3333333334444444444444444443333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0034 Score=55.63 Aligned_cols=67 Identities=12% Similarity=-0.027 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003946 289 NLLIIMAHIYERNGRREELRKLQRHIDEAV--NLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQR 355 (784)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (784)
.++..+...|...|++++|.+.+++..+.. ..+......++..+...|...|++++|.+.+++..+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 78 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL 78 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455666666777777777777776655431 1111111125777888888888888888888877663
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00085 Score=56.83 Aligned_cols=15 Identities=7% Similarity=0.029 Sum_probs=5.6
Q ss_pred HcCChHHHHHHHHHH
Q 003946 535 EANRPREVTALLRDA 549 (784)
Q Consensus 535 ~~g~~~~A~~~~~~m 549 (784)
+.|++++|...|++.
T Consensus 29 ~~g~~~~A~~~~~~a 43 (121)
T 1hxi_A 29 KLANLAEAALAFEAV 43 (121)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 333333333333333
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00065 Score=73.31 Aligned_cols=89 Identities=10% Similarity=-0.053 Sum_probs=45.7
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHH
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 611 (784)
.|.+.|++++|...|++..+.. ..+...|..+..+|.+.|++++|++.+++..+.. |.+..++..+..+|.+.|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Confidence 3445555666666666555442 1234555555555555555555555555555543 444444444444444455555
Q ss_pred HHHHHHHHHHhc
Q 003946 612 LMAKLLQEVKEG 623 (784)
Q Consensus 612 ~a~~~~~~~~~~ 623 (784)
+|.+.|++..+.
T Consensus 92 eA~~~~~~al~~ 103 (477)
T 1wao_1 92 AALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555544444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00049 Score=74.28 Aligned_cols=120 Identities=8% Similarity=-0.056 Sum_probs=90.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 003946 495 ITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDT 574 (784)
Q Consensus 495 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 574 (784)
...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|...+++..+.. ..+...|..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 345667899999999999999874 3368899999999999999999999999998874 33678899999999999999
Q ss_pred hHHHHHHHHhHhcCCCCCcHHHHHHHHHH--HHhcCcHHHHHHHHH
Q 003946 575 PGALHLFKEMKESKIPRSGHQEFEMLVKG--CAQNHEAGLMAKLLQ 618 (784)
Q Consensus 575 ~~A~~~~~~m~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 618 (784)
++|++.|++..+.. |.+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999998865 4444344444333 455555555555544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0018 Score=69.49 Aligned_cols=88 Identities=7% Similarity=-0.053 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIH 638 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 638 (784)
..|..+..+|.+.|++++|+..+++..+.. |.+...|..+..+|...|++++|...|+...+..+- +...|..+..
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~--~~~a~~~l~~ 393 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ--NKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Confidence 344444555555555555555555554433 344444444444444444444444444444443211 2223444555
Q ss_pred HHHhcCCHHHHH
Q 003946 639 FFCKKRLMQDAE 650 (784)
Q Consensus 639 ~~~~~g~~~~A~ 650 (784)
++.+.|+.+++.
T Consensus 394 ~~~~~~~~~~a~ 405 (457)
T 1kt0_A 394 CQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0025 Score=54.24 Aligned_cols=54 Identities=19% Similarity=0.075 Sum_probs=21.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003946 497 LCISLGWLDQAHDLLDEMHLAGVRASS---SVYASLLKAYIEANRPREVTALLRDARS 551 (784)
Q Consensus 497 ~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 551 (784)
.+...|++++|...|+...+.... +. ..+..+..+|.+.|++++|...|++..+
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333444444444444444433211 11 2333344444444444444444444433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0064 Score=51.60 Aligned_cols=94 Identities=10% Similarity=0.017 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHH
Q 003946 455 IKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDD---AALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS---SSVYAS 528 (784)
Q Consensus 455 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~ 528 (784)
..+...+.+.|++++|...|.+..+.. +.+. ..+..+..++.+.|++++|...|+...+.... + ...+..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 345667889999999999999998865 2233 46777888999999999999999999986422 3 677888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 003946 529 LLKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
+..+|.+.|++++|...|++..+.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 899999999999999999999876
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0032 Score=67.53 Aligned_cols=139 Identities=8% Similarity=-0.031 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
....|..+...+.+.|++++|+..|.+..+... -.++. .-+... +.... ...+|..+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p-~~~~~--------------~~~~~~----~~~~~----~~~~~~nl 323 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLE-MEYGL--------------SEKESK----ASESF----LLAAFLNL 323 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TCCSC--------------CHHHHH----HHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccC--------------ChHHHH----HHHHH----HHHHHHHH
Confidence 345777788888888888888888888876541 11110 000000 00000 13445555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCc
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHE 609 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 609 (784)
..+|.+.|++++|+..+++..+.. ..+...|..+-.+|...|++++|+..|++..+.. |.+...+..+...+.+.++
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHH
Confidence 555555566666665555555442 2244555555555666666666666666555533 4444555555555555555
Q ss_pred HHHHH
Q 003946 610 AGLMA 614 (784)
Q Consensus 610 ~~~a~ 614 (784)
.+++.
T Consensus 401 ~~~a~ 405 (457)
T 1kt0_A 401 HNERD 405 (457)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0038 Score=55.87 Aligned_cols=62 Identities=10% Similarity=-0.008 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 595 QEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 595 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
..|..+..+|.+.|++++|...++...+.++ .+...|..+..+|...|++++|...|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREE--TNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3444444444444555555544444444321 1334455555555555555555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00074 Score=56.75 Aligned_cols=88 Identities=7% Similarity=0.094 Sum_probs=70.5
Q ss_pred hcCChhHHHHHHHhhhhCCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCCh
Q 003946 265 LFETTRKAEQLLDIMPRIGV--KADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDL 342 (784)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~g~--~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 342 (784)
..|++++|+..|++.++.+. +-+...+..+..+|.+.|++++|.+.|++..+..+.+.. ++..+..+|.+.|++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA----LRVFYAMVLYNLGRY 77 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH----HHHHHHHHHHHcCCH
Confidence 46889999999999988641 223477888999999999999999999999987555544 689999999999999
Q ss_pred hHHHHHHHHHHHHH
Q 003946 343 NSASKMVLEMLQRA 356 (784)
Q Consensus 343 ~~A~~~~~~m~~~~ 356 (784)
++|...|++.....
T Consensus 78 ~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 78 EQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0031 Score=65.33 Aligned_cols=87 Identities=17% Similarity=0.075 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003946 559 SCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIH 638 (784)
Q Consensus 559 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~ 638 (784)
..|..+..+|.+.|++++|+..+++..+.. |.+...+..+..+|...|++++|.+.|+...+..+ .+...+..+..
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P--~~~~~~~~l~~ 349 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP--EDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Confidence 445555555555555555555555555432 44444444444444445555555544444444321 12333444444
Q ss_pred HHHhcCCHHHH
Q 003946 639 FFCKKRLMQDA 649 (784)
Q Consensus 639 ~~~~~g~~~~A 649 (784)
.+...++.+++
T Consensus 350 ~~~~~~~~~~a 360 (370)
T 1ihg_A 350 VKQKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0064 Score=54.33 Aligned_cols=101 Identities=13% Similarity=0.017 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-------CCCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKE-------NLQV--------SHDDAALGHVITLCISLGWLDQAHDLLDEMH 515 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~--------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 515 (784)
...+......+.+.|++++|+..|.+.... ..+. +.+...|..+..+|.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 356778888999999999999999998765 1000 1223456666677777777777777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003946 516 LAGVRASSSVYASLLKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 516 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 654 235667777777777777777777777776654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0047 Score=64.01 Aligned_cols=138 Identities=9% Similarity=-0.078 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
...|..+...+.+.|++++|+..|++..+.- +... .....+.+.. . -+.+..+|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~----~~~~----------~~~~~~~~~~-------~-~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV----EGSR----------AAAEDADGAK-------L-QPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHH----------HHSCHHHHGG-------G-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----hcCc----------cccChHHHHH-------H-HHHHHHHHHHHH
Confidence 3457777778888888888888888776521 0000 0000000000 0 001234555555
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcH
Q 003946 531 KAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEA 610 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~ 610 (784)
.+|.+.|++++|...+++..+.. ..+...|..+..+|...|++++|+..|++..+.. |.+...+..+...+...++.
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665542 1244555556666666666666666666655543 44455555555555555444
Q ss_pred HHH
Q 003946 611 GLM 613 (784)
Q Consensus 611 ~~a 613 (784)
+++
T Consensus 358 ~~a 360 (370)
T 1ihg_A 358 KDK 360 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0076 Score=52.91 Aligned_cols=92 Identities=14% Similarity=0.020 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHHcCChhHHHHHHHHhHhc-----C
Q 003946 527 ASLLKAYIEANRPREVTALLRDARSAGIQLD-------------ASCYEALLQSKIVQKDTPGALHLFKEMKES-----K 588 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----~ 588 (784)
......+.+.|++++|...|++..+. .|+ ...|+.+-.++.+.|++++|+..+++..+. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 33444455556666666666655443 222 125555555666666666666665555543 1
Q ss_pred CCCCcHHHH----HHHHHHHHhcCcHHHHHHHHHHH
Q 003946 589 IPRSGHQEF----EMLVKGCAQNHEAGLMAKLLQEV 620 (784)
Q Consensus 589 ~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~ 620 (784)
+.|++...| .....++...|++++|...|+..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 124444444 44444444444444444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.041 Score=60.43 Aligned_cols=177 Identities=8% Similarity=-0.045 Sum_probs=135.2
Q ss_pred HHcCCh-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 462 LEAGKT-KELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW----------LDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 462 ~~~g~~-~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
.+.|.+ ++|++.++++.... +-+...|+.--..+.+.|+ ++++.+.++.+.+... -+..+|+.-.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~n---P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~ 114 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRC 114 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 344444 67899999999876 5566678777777777777 8999999999998764 3788898888
Q ss_pred HHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc
Q 003946 531 KAYIEAN--RPREVTALLRDARSAGIQLDASCYEALLQSKIVQK-DTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN 607 (784)
Q Consensus 531 ~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 607 (784)
..+.+.| +++++...++++.+.. ..|...|+.--..+.+.| ..+++++.++++.+.. |.+..+|+.....+.+.
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhh
Confidence 8888888 6699999999998876 348888988888888888 8899999999988765 77788888877777664
Q ss_pred --------------CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003946 608 --------------HEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 608 --------------~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
+.++++.+.++.....++ -|...|+-+-..+.+.++.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P--~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTDP--NDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS--SCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCCcc
Confidence 456777777777766543 25566777777776666633
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0015 Score=66.86 Aligned_cols=61 Identities=10% Similarity=0.004 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003946 560 CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 560 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 622 (784)
.|..+..+|.+.|++++|+..+++..+.. |.+...|..+..+|...|++++|...|+...+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555556666666666666666655543 44455555555555555555555555555544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0036 Score=67.15 Aligned_cols=102 Identities=9% Similarity=-0.033 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCC
Q 003946 630 VHDWNNVIHFFCKKRLMQDAEKALKRMRSL-----G-HLPN-AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMN 702 (784)
Q Consensus 630 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~ 702 (784)
..+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|...|...| ++++|..++++..+.... -+.
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G-~~~eA~~~~~~Al~i~~~-~lG 428 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAG-HIEVGHGMICKAYAILLV-THG 428 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH-HTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH-HhC
Confidence 457888888999999999998888887653 2 2232 457888888899989 999999988877653221 122
Q ss_pred CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 703 FD----EELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 703 p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
|+ ..+.+.+-.++...|++++|..++.++.+
T Consensus 429 ~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 429 PSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 34566777888888999999999999875
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0033 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=8.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 003946 526 YASLLKAYIEANRPREVTALLRD 548 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~ 548 (784)
+..+...|...|++++|...|++
T Consensus 22 ~~~lg~~~~~~g~~~~A~~~~~~ 44 (115)
T 2kat_A 22 RFTLGKTYAEHEQFDAALPHLRA 44 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHH
Confidence 33333333333333333333333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.048 Score=59.87 Aligned_cols=155 Identities=11% Similarity=-0.039 Sum_probs=126.2
Q ss_pred CHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc
Q 003946 450 TEKIYIKLVKAFLEAGK----------TKELTHFLIKAEKENLQVSHDDAALGHVITLCISLG--WLDQAHDLLDEMHLA 517 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~ 517 (784)
+...|+.--.++...|+ ++++++.++++.+.. +-+..+|..-...+.+.| +++++.+.++.+.+.
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~---pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence 34566666566666666 899999999999887 677888998888888999 779999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------------CChhHHHHHHH
Q 003946 518 GVRASSSVYASLLKAYIEAN-RPREVTALLRDARSAGIQLDASCYEALLQSKIVQ--------------KDTPGALHLFK 582 (784)
Q Consensus 518 g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~--------------g~~~~A~~~~~ 582 (784)
... |..+|+.-...+.+.| ..+++.+.++++.+..+ -|...|+.....+... +.++++++.++
T Consensus 139 d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~ 216 (567)
T 1dce_A 139 DER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ 216 (567)
T ss_dssp CTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHH
T ss_pred ccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHH
Confidence 644 8999999888888889 89999999999987753 4788888887777763 45688999999
Q ss_pred HhHhcCCCCCcHHHHHHHHHHHHhcCcHH
Q 003946 583 EMKESKIPRSGHQEFEMLVKGCAQNHEAG 611 (784)
Q Consensus 583 ~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 611 (784)
+..... |.+...|..+-..+.+.++.+
T Consensus 217 ~ai~~~--P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 217 NAFFTD--PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHHHC--SSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHhhC--CCCccHHHHHHHHHhcCCCcc
Confidence 888765 888889999888888877633
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.016 Score=62.02 Aligned_cols=93 Identities=11% Similarity=-0.011 Sum_probs=73.0
Q ss_pred hhhcCChhHHHHHHHhhhhC---CCCC---Ch-hHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cCCChhhHHHHHHH
Q 003946 263 CLLFETTRKAEQLLDIMPRI---GVKA---DS-NLLIIMAHIYERNGRREELRKLQRHIDEA----VNLSDIQFRQFYNC 331 (784)
Q Consensus 263 ~~~~g~~~~A~~l~~~m~~~---g~~p---d~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~----~~~~~~~~~~~~~~ 331 (784)
+-..|++++|+.++++.++. -+.| +. .+++.|..+|...|++++|..++++..+. -+++.+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44689999999999887642 1223 22 67899999999999999999999886543 34444444458999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHH
Q 003946 332 LLSCHLKFGDLNSASKMVLEMLQR 355 (784)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~m~~~ 355 (784)
|...|...|++++|+.++++..+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988874
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.014 Score=51.12 Aligned_cols=75 Identities=8% Similarity=0.057 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-HHHH----HHHHHHHHHcCCCHHHHHHHHHHHHhcccC-CC
Q 003946 632 DWNNVIHFFCKKRLMQDAEKALKRMRSL-----GHLPN-AQTF----HSMVTGYAAIGGKYTEVTELWGEMKSFASS-TS 700 (784)
Q Consensus 632 ~y~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~~~----~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~-~~ 700 (784)
.|+.+..++.+.|++++|+..+++.++. .+.|+ ...| ...-.++...| ++++|+..|++..+..+. .+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lg-r~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLG-RGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCC-CHHHHHHHHHHHHhcCCCcHH
Confidence 6788888888888888888888877763 12675 4566 77777888888 888888888887765432 34
Q ss_pred CCCCHHH
Q 003946 701 MNFDEEL 707 (784)
Q Consensus 701 ~~p~~~~ 707 (784)
+.+....
T Consensus 138 ~~~~~~~ 144 (159)
T 2hr2_A 138 ETPGKER 144 (159)
T ss_dssp CCTTHHH
T ss_pred HHHHHHH
Confidence 4444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.032 Score=48.20 Aligned_cols=111 Identities=14% Similarity=0.036 Sum_probs=78.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChH
Q 003946 465 GKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE----ANRPR 540 (784)
Q Consensus 465 g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~ 540 (784)
+++++|.+.|++..+.+ .|+.. +-..|...+.+++|.+.|+...+.| +...+..|-..|.. .++.+
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 45677888888877776 45543 4455556667777888888877765 66777777777777 67788
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHhHhcC
Q 003946 541 EVTALLRDARSAGIQLDASCYEALLQSKIV----QKDTPGALHLFKEMKESK 588 (784)
Q Consensus 541 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 588 (784)
+|...|++..+.| +...+..|-..|.. .++.++|+..|++..+.|
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888888777654 55666666666666 677777777777777665
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0031 Score=64.51 Aligned_cols=148 Identities=9% Similarity=-0.053 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
....|..+...+.+.|++++|...|.+..... |+... +...|+.+++...+ . ..+|..+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~----p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nl 236 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM----GDDFM-------FQLYGKYQDMALAV---K-------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS----CHHHH-------HTCCHHHHHHHHHH---H-------THHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh----ccchh-------hhhcccHHHHHHHH---H-------HHHHHHH
Confidence 34567778888889999999999999987654 44432 12223333333222 1 1377788
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH-hcC
Q 003946 530 LKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA-QNH 608 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~-~~~ 608 (784)
..+|.+.|++++|...+++..+.. ..+...|..+..+|...|++++|+..|++..+.. |.+...+..+..... ..+
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHH
Confidence 888889999999999999887763 2367788888889999999999999998876643 544444443333311 223
Q ss_pred cHHHHHHHHHHHH
Q 003946 609 EAGLMAKLLQEVK 621 (784)
Q Consensus 609 ~~~~a~~~~~~~~ 621 (784)
..+.+.++|..+.
T Consensus 314 ~~~~a~~~~~~~l 326 (338)
T 2if4_A 314 LYQKQKEMYKGIF 326 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHhh
Confidence 3344444444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.013 Score=50.71 Aligned_cols=109 Identities=9% Similarity=-0.025 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHh----cCcHHHHH
Q 003946 539 PREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQ----NHEAGLMA 614 (784)
Q Consensus 539 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~ 614 (784)
+++|...|++..+.| .|+.. |-..|...+.+++|++.|++..+.| +...+..|...|.. .+++++|.
T Consensus 11 ~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 11 LKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 444444444444443 22222 2233333334444444444444433 12334444444443 34444444
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 003946 615 KLLQEVKEGQRIDCGVHDWNNVIHFFCK----KRLMQDAEKALKRMRSLG 660 (784)
Q Consensus 615 ~~~~~~~~~~~~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~g 660 (784)
++|+...+.+ +...+..|-..|.. .++.++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 4444444432 33445555555555 555555555555555544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.018 Score=47.71 Aligned_cols=82 Identities=15% Similarity=0.066 Sum_probs=66.8
Q ss_pred hHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHH
Q 003946 270 RKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMV 349 (784)
Q Consensus 270 ~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 349 (784)
+.|+..|+...+.. +.+...+..+...|.+.|++++|...|+...+..+.... .|..+..+|.+.|++++|...|
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV----AWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH----HHHHHHHHHHHcCCHHHHHHHH
Confidence 35677788877653 335678888999999999999999999999887555444 5899999999999999999999
Q ss_pred HHHHHHH
Q 003946 350 LEMLQRA 356 (784)
Q Consensus 350 ~~m~~~~ 356 (784)
++..+..
T Consensus 77 ~~al~~~ 83 (115)
T 2kat_A 77 ESGLAAA 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9887743
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0014 Score=53.99 Aligned_cols=24 Identities=13% Similarity=-0.083 Sum_probs=9.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 003946 634 NNVIHFFCKKRLMQDAEKALKRMR 657 (784)
Q Consensus 634 ~~li~~~~~~g~~~~A~~~~~~m~ 657 (784)
..+..+|.+.|++++|++.+++..
T Consensus 42 ~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 42 SNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333333333333333333333333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.021 Score=44.54 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHh
Q 003946 526 YASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKE 586 (784)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (784)
+..+...|...|++++|...|++..+.. ..+...|..+...+...|++++|+..+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3333444444444444444444443321 11333344444444444444444444444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.033 Score=43.44 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
...|..+...+...|++++|...|.+..+.. +.+..++..+...+.+.|++++|...|++..+.. +.+...+..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4566677777777888888888887777665 4456667777777777777777777777777653 22455555555
Q ss_pred HHHHH
Q 003946 531 KAYIE 535 (784)
Q Consensus 531 ~~~~~ 535 (784)
..+.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0082 Score=48.49 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~ 550 (784)
.+..+...|.+.|++++|...|++..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al 34 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELV 34 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333334444444444444444333
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.012 Score=48.26 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLA 517 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 517 (784)
..|..+...+...|++++|...|.+..+.. +.+...+..+..++.+.|++++|...++...+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 445555566666666666666666665554 344555555666666666666666666666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.033 Score=56.16 Aligned_cols=63 Identities=10% Similarity=-0.069 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003946 629 GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKS 694 (784)
Q Consensus 629 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~ 694 (784)
+..+|..+...+...|++++|...+++.+..+ |+...|..+-..+.-.| ++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G-~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKG-MNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHh
Confidence 44555555555555566666666666666643 55555555555555556 66666666666554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0092 Score=52.25 Aligned_cols=58 Identities=5% Similarity=-0.068 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003946 611 GLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKK-----------RLMQDAEKALKRMRSLGHLPNAQTFHSMV 672 (784)
Q Consensus 611 ~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 672 (784)
++|+..|++..+.++- +...|..+..+|... |++++|++.|++.++ +.|+...|...+
T Consensus 63 ~eAi~~le~AL~ldP~--~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 63 QEAITKFEEALLIDPK--KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 3555555555543321 234455555555544 367777777777776 456655554433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.22 Score=41.28 Aligned_cols=139 Identities=11% Similarity=0.078 Sum_probs=93.5
Q ss_pred HcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003946 570 VQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDA 649 (784)
Q Consensus 570 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A 649 (784)
-.|.+++..++..+.... .+..-|+-++--....-+.+-..+.++.+-.-..+ ..+|++...
T Consensus 19 ldG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 346677777777766653 33445666665555566666666666666655432 334455544
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003946 650 EKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVA 729 (784)
Q Consensus 650 ~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 729 (784)
...+-.+- .+..-+...++.+...| +-|.-.++...+.. +.+|++...-.+..+|.+-|+..+|.+++.
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~-KkDqLdki~~~~l~-----n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQG-KRDKLEEIGREILK-----NNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTT-CHHHHHHHHHHHC-------CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhc-cHhHHHHHHHHHhc-----cCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 44443332 24455667778888888 88888888888643 466788888889999999999999999999
Q ss_pred HHHhCCCC
Q 003946 730 MMEEGKMF 737 (784)
Q Consensus 730 ~m~~~g~~ 737 (784)
+..++|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 99988874
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.023 Score=49.78 Aligned_cols=59 Identities=10% Similarity=0.101 Sum_probs=38.3
Q ss_pred hhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 003946 574 TPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN-----------HEAGLMAKLLQEVKEGQRIDCGVHDWNNVI 637 (784)
Q Consensus 574 ~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p~~~~y~~li 637 (784)
+++|+..|++..+.. |....+|..+..+|... |++++|.+.|++..+. .|+-..|..-+
T Consensus 62 ~~eAi~~le~AL~ld--P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~~~y~~al 131 (158)
T 1zu2_A 62 IQEAITKFEEALLID--PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 446677777666654 66666777777777665 3788888888888774 35554444333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.053 Score=43.51 Aligned_cols=65 Identities=11% Similarity=-0.068 Sum_probs=42.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003946 287 DSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEMLQR 355 (784)
Q Consensus 287 d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (784)
+...+..+...|.+.|++++|.+.|+...+.++.... .|..+..+|.+.|++++|.+.|++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG----TYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455666666777777777777777776665444333 4677777777777777777777766653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.05 Score=57.17 Aligned_cols=92 Identities=5% Similarity=0.034 Sum_probs=72.5
Q ss_pred hcCChhHHHHHHHhhhhC---CCCCC---h-hHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cCCChhhHHHHHHHHH
Q 003946 265 LFETTRKAEQLLDIMPRI---GVKAD---S-NLLIIMAHIYERNGRREELRKLQRHIDEA----VNLSDIQFRQFYNCLL 333 (784)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~---g~~pd---~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~----~~~~~~~~~~~~~~li 333 (784)
..|++++|+.++++.++. -+.|+ . .+++.|..+|...|++++|..++++..+. .+++.+....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999887642 22233 2 77899999999999999999999886543 3444444445899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHH
Q 003946 334 SCHLKFGDLNSASKMVLEMLQRA 356 (784)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~m~~~~ 356 (784)
..|...|++++|+.++++..+.-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHH
Confidence 99999999999999999988753
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.14 Score=51.63 Aligned_cols=74 Identities=8% Similarity=0.003 Sum_probs=58.6
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003946 591 RSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFH 669 (784)
Q Consensus 591 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 669 (784)
|.+..+|..+...+...|++++|...++.....+ |+...|..+-..+.-.|++++|.+.|++... +.|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 6667777777777777788888888888888754 6777787888888889999999999988887 468777764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.093 Score=55.19 Aligned_cols=96 Identities=8% Similarity=-0.063 Sum_probs=70.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC--CCCCCC-HH
Q 003946 637 IHFFCKKRLMQDAEKALKRMRSLG---HLPN----AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS--TSMNFD-EE 706 (784)
Q Consensus 637 i~~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~--~~~~p~-~~ 706 (784)
+..+.+.|++++|++++++.++.. +.|+ ..+++.+..+|...| ++++|+.++++....... ..-.|+ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g-~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG-LLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 344566788888888888887642 2232 457888888899999 999999999887653221 112233 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 707 LLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 707 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
+++.|...|...|++++|..++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 689999999999999999999988764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.093 Score=55.19 Aligned_cols=98 Identities=10% Similarity=-0.128 Sum_probs=77.0
Q ss_pred HHHHhhhcCChhHHHHHHHhhhhC---CCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cCCChhhHHH
Q 003946 259 ALAGCLLFETTRKAEQLLDIMPRI---GVKADS----NLLIIMAHIYERNGRREELRKLQRHIDEA----VNLSDIQFRQ 327 (784)
Q Consensus 259 ll~~~~~~g~~~~A~~l~~~m~~~---g~~pd~----~~~~~li~~~~~~g~~~~A~~l~~~~~~~----~~~~~~~~~~ 327 (784)
.+..+.+.|++++|+.++++.++. -+.|+. .+++.|..+|...|++++|..++++..+. .++..+....
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 345566789999999999988743 122332 67889999999999999999999886543 3444444455
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 003946 328 FYNCLLSCHLKFGDLNSASKMVLEMLQRA 356 (784)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 356 (784)
+++.|...|...|++++|+.++++..+.-
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999988753
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.076 Score=55.79 Aligned_cols=90 Identities=2% Similarity=-0.127 Sum_probs=64.1
Q ss_pred cCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC-C-CCCCC-HHHHHHHH
Q 003946 643 KRLMQDAEKALKRMRSL---GHLPN----AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASS-T-SMNFD-EELLDSVL 712 (784)
Q Consensus 643 ~g~~~~A~~~~~~m~~~---g~~p~----~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~-~-~~~p~-~~~~~~li 712 (784)
.|++++|+.++++.++. -+-|+ ..+++.|..+|...| ++++|..++++..+...+ . .-.|+ ..+|+.|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ-DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46778888887776652 12232 457788888888888 888888888877653221 1 12233 34689999
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 003946 713 YTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 713 ~~~~~~g~~~~A~~l~~~m~~ 733 (784)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.98 Score=37.52 Aligned_cols=66 Identities=20% Similarity=0.127 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR 520 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 520 (784)
......++.+...|.-++..+++..+.... +|++...-.+-.||.+.|+..+|.+++.+..+.|++
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~---~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNN---EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccC---CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 445566777778888888777777754433 677777777778888888888888888888887764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.93 Score=52.26 Aligned_cols=49 Identities=6% Similarity=0.046 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003946 595 QEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKAL 653 (784)
Q Consensus 595 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~ 653 (784)
..|..+...|.+.++++.|++.|..+.. |..+...|...|+.+...++-
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHH
Confidence 3444455555555555555444444432 344444444455554444333
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.21 Score=57.81 Aligned_cols=154 Identities=12% Similarity=0.149 Sum_probs=94.9
Q ss_pred HHHHcCChHHHHH-HHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 460 AFLEAGKTKELTH-FLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANR 538 (784)
Q Consensus 460 ~~~~~g~~~~a~~-~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 538 (784)
.....+++++|.+ ++.. .++......++..+.+.|.++.|.++.+.-. .-.......|+
T Consensus 608 ~~~~~~~~~~a~~~~l~~--------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~ 667 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN--------VEGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQ 667 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG--------CCCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHhc--------CCchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCC
Confidence 3456788888866 4421 2212223677788888888888887663211 11334567899
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003946 539 PREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQ 618 (784)
Q Consensus 539 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 618 (784)
+++|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...++.+...++-+
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHH
Confidence 99998876543 4678899999999999999999999987642 3344444555665555544444
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003946 619 EVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRM 656 (784)
Q Consensus 619 ~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 656 (784)
.....+. ++.-..+|.+.|++++|++++.++
T Consensus 732 ~a~~~~~-------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 732 DAETTGK-------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHcCc-------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4443321 344444455556666555555433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.54 E-value=2.1 Score=37.87 Aligned_cols=23 Identities=0% Similarity=0.042 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 003946 633 WNNVIHFFCKKRLMQDAEKALKR 655 (784)
Q Consensus 633 y~~li~~~~~~g~~~~A~~~~~~ 655 (784)
+|.-...+...|+++++.+++.+
T Consensus 92 ~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 92 FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44445555556666666666543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.25 Score=39.05 Aligned_cols=55 Identities=13% Similarity=0.069 Sum_probs=25.2
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDAS-CYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
.+.+.|++++|...|++..+.. ..+.. .|..+-.+|...|++++|+..|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444455555555555544432 11233 4444444444455555555555544443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.29 E-value=2.7 Score=37.24 Aligned_cols=128 Identities=15% Similarity=0.112 Sum_probs=89.4
Q ss_pred HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003946 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
..+.|+++.|.++.+++ ++...|..|.......|+++-|++.|..... |..+.-.|.-.|+.+
T Consensus 15 AL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHH
T ss_pred HHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHH
Confidence 34568888888887765 3366888888888888888888888888774 678888888899988
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003946 648 DAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEV 727 (784)
Q Consensus 648 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 727 (784)
+-.++-+.....| + ++.-...+.-.| +++++.+++.+..+ -| --.-.....|-.+.|.++
T Consensus 78 ~L~kla~iA~~~g---~---~n~af~~~l~lG-dv~~~i~lL~~~~r-------~~------eA~~~A~t~g~~~~a~~~ 137 (177)
T 3mkq_B 78 KLSKMQNIAQTRE---D---FGSMLLNTFYNN-STKERSSIFAEGGS-------LP------LAYAVAKANGDEAAASAF 137 (177)
T ss_dssp HHHHHHHHHHHTT---C---HHHHHHHHHHHT-CHHHHHHHHHHTTC-------HH------HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCc---c---HHHHHHHHHHcC-CHHHHHHHHHHCCC-------hH------HHHHHHHHcCcHHHHHHH
Confidence 8777766555543 1 344555566678 99999999866544 11 111122235667788888
Q ss_pred HHHHH
Q 003946 728 VAMME 732 (784)
Q Consensus 728 ~~~m~ 732 (784)
.+++.
T Consensus 138 ~~~~~ 142 (177)
T 3mkq_B 138 LEQAE 142 (177)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 77663
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.36 Score=38.05 Aligned_cols=55 Identities=11% Similarity=0.003 Sum_probs=29.5
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003946 460 AFLEAGKTKELTHFLIKAEKENLQVSHDDA-ALGHVITLCISLGWLDQAHDLLDEMHLA 517 (784)
Q Consensus 460 ~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 517 (784)
.+.+.|++++|...|++..+.. +.+.. .+..+..++...|++++|...|+...+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE---PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC---SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4445555555555555555543 33344 4555555555555555555555555544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.87 Score=35.69 Aligned_cols=46 Identities=2% Similarity=-0.049 Sum_probs=18.5
Q ss_pred hHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003946 575 PGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 575 ~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 622 (784)
++|..++++..+.. |.+......+...+.+.|++++|...|+.+.+
T Consensus 26 ~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444332 33333333333444444444444444444333
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.42 E-value=0.59 Score=40.34 Aligned_cols=81 Identities=9% Similarity=-0.018 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChHHH
Q 003946 468 KELTHFLIKAEKENLQVSHDDAALGHVITLCISLG---WLDQAHDLLDEMHLAGVRA--SSSVYASLLKAYIEANRPREV 542 (784)
Q Consensus 468 ~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A 542 (784)
..+.+.|.+....+ .++..+...+-.++++++ +++++..++++..+.+ .| +...+-.|.-+|.+.|++++|
T Consensus 15 ~~~~~~y~~e~~~~---~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHTT---CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34445555555555 456666666666677666 4557777777777654 12 233334455566777777777
Q ss_pred HHHHHHHHHc
Q 003946 543 TALLRDARSA 552 (784)
Q Consensus 543 ~~~~~~m~~~ 552 (784)
.+.++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777777664
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.48 E-value=0.77 Score=36.85 Aligned_cols=77 Identities=12% Similarity=0.019 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003946 664 NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASST--SMNFDEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKY 741 (784)
Q Consensus 664 ~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 741 (784)
+..-+..+...+...+ +++.|...+++..+..... .-.+...++..|..+|.+.|++++|...+++..+ +.|+..
T Consensus 4 sa~dc~~lG~~~~~~~-~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEA-DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CHHHHHHHHHHHHHcc-chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 4455567777888888 9999999888876643222 1234567888999999999999999999998887 466654
Q ss_pred HH
Q 003946 742 KY 743 (784)
Q Consensus 742 ~~ 743 (784)
..
T Consensus 81 ~~ 82 (104)
T 2v5f_A 81 RA 82 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.31 E-value=0.93 Score=39.09 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHH
Q 003946 505 DQAHDLLDEMHLAGVRASSSVYASLLKAYIEAN---RPREVTALLRDARS 551 (784)
Q Consensus 505 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 551 (784)
..+++.|.+..+.|. ++..+.-.+..++++++ +++++..++++..+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~ 63 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP 63 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 334444444433332 34444444444444444 33344444444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.08 E-value=2.9 Score=32.64 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 522 SSSVYASLLKAYIEANR---PREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 522 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
|...+..+..++...++ .++|..++++..+.. +-+......+-..+.+.|++++|+..|+++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44444444444433332 455555555554442 1233444444445555555555555555555443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=91.56 E-value=10 Score=36.58 Aligned_cols=83 Identities=11% Similarity=0.040 Sum_probs=45.1
Q ss_pred hHHHHHHHHhHhcCCCCC--cHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhc-C
Q 003946 575 PGALHLFKEMKESKIPRS--GHQEFEMLVKGCAQN-----HEAGLMAKLLQEVKEGQRIDC--GVHDWNNVIHFFCKK-R 644 (784)
Q Consensus 575 ~~A~~~~~~m~~~~~~~~--~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~p--~~~~y~~li~~~~~~-g 644 (784)
..|...+++..+.. |. +...|..+...|.+. |+.+.|.+.|++..+.+ | +..++......+++. |
T Consensus 180 ~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln---P~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 180 HAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC---SAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC---CTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHhcC
Confidence 44555555555543 33 334566666666653 56666666666665533 3 244455555555553 6
Q ss_pred CHHHHHHHHHHHHhCCCC
Q 003946 645 LMQDAEKALKRMRSLGHL 662 (784)
Q Consensus 645 ~~~~A~~~~~~m~~~g~~ 662 (784)
+.+++.+.+++.+.....
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 666666666666655433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=90.29 E-value=2.9 Score=33.29 Aligned_cols=61 Identities=8% Similarity=-0.107 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003946 491 LGHVITLCISLGWLDQAHDLLDEMHLAG------VRASSSVYASLLKAYIEANRPREVTALLRDARS 551 (784)
Q Consensus 491 ~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 551 (784)
+..+...+.+.|+++.|...|+...+.- -.+...++..|..+|.+.|+++.|...+++..+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344455555555555555555444320 012334444444444555555555555444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=89.63 E-value=1.8 Score=41.72 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhcccCCCCCC--CHHHHHHHHHHH
Q 003946 646 MQDAEKALKRMRSLGHLPN---AQTFHSMVTGYAAI-----GGKYTEVTELWGEMKSFASSTSMNF--DEELLDSVLYTF 715 (784)
Q Consensus 646 ~~~A~~~~~~m~~~g~~p~---~~~~~~ll~a~~~~-----g~~~~~a~~~~~~m~~~~~~~~~~p--~~~~~~~li~~~ 715 (784)
..+|..++++..+ +.|+ ...|..+...|... | +.++|.+.|++..+ +.| +..++..+.+.|
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gG-d~ekA~~~ferAL~------LnP~~~id~~v~YA~~l 249 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGG-GMEKAHTAFEHLTR------YCSAHDPDHHITYADAL 249 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTC-CHHHHHHHHHHHHH------HCCTTCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCC-CHHHHHHHHHHHHH------hCCCCCchHHHHHHHHH
Confidence 3455555666655 3454 44566666666663 4 77777777777666 333 255566666666
Q ss_pred Hhc-CChHHHHHHHHHHHhCCCC--CCHHHHHHH
Q 003946 716 VRG-GFFARANEVVAMMEEGKMF--IDKYKYRTL 746 (784)
Q Consensus 716 ~~~-g~~~~A~~l~~~m~~~g~~--pd~~~~~~l 746 (784)
++. |+.+++.+.+++..+.... |+....+.+
T Consensus 250 ~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 250 CIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp TTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 663 6777777777777766555 554444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.29 E-value=2.8 Score=34.72 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=6.8
Q ss_pred HHhcCcHHHHHHHHHHHH
Q 003946 604 CAQNHEAGLMAKLLQEVK 621 (784)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~ 621 (784)
+.+.|+++.|.+.++.+.
T Consensus 84 ~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 333333333333333333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=87.27 E-value=13 Score=31.71 Aligned_cols=108 Identities=12% Similarity=0.125 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003946 449 PTEKIYIKLVKAFLEAGKT------KELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS 522 (784)
Q Consensus 449 p~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 522 (784)
-|..+|-..+....+.|+. ++..++|++.... ++|+.. +.++.=.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~---~Pp~k~------------~~wrrYI-------------- 61 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA---LPPDKY------------GQNESFA-------------- 61 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH---SCGGGG------------TTCHHHH--------------
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc---CCcccc------------ccHHHHH--------------
Confidence 3677777777777777777 6666777766654 355421 0110000
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 523 SSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
..|--.. .+...+++++|.++|+.+++..-.. ...|......-.+.|++.+|.+++......+
T Consensus 62 -~LWIrYA-~~~ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 62 -RIQVRFA-ELKAIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp -HHHHHHH-HHHHHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -HHHHHHH-HHHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 0000000 0112256666666666665432222 4455555555556667777777776666655
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=87.01 E-value=2.9 Score=34.57 Aligned_cols=82 Identities=10% Similarity=0.028 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHH
Q 003946 468 KELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQ---AHDLLDEMHLAGVR-ASSSVYASLLKAYIEANRPREVT 543 (784)
Q Consensus 468 ~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~ 543 (784)
..+.+-|.+....| .|+..+-..+-.++.++.+... +..+++++.+.+-+ -.....-.|.-++.+.|++++|.
T Consensus 18 ~~~~~~y~~e~~~~---~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHS---CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444444444444 3444444445555555554443 66666665554311 01222223445556666666666
Q ss_pred HHHHHHHHc
Q 003946 544 ALLRDARSA 552 (784)
Q Consensus 544 ~~~~~m~~~ 552 (784)
+.++.+++.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.62 E-value=6.9 Score=30.61 Aligned_cols=63 Identities=3% Similarity=0.083 Sum_probs=51.4
Q ss_pred ChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 003946 268 TTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLS 334 (784)
Q Consensus 268 ~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~ 334 (784)
|.-+..+-++.+....+.|++.+..+.+.+|-|.+++..|.++|+.++.+...... +|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~----iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKE----IYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTT----HHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchh----hHHHHHH
Confidence 45567777888888889999999999999999999999999999999887544432 4666654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.48 E-value=22 Score=37.08 Aligned_cols=194 Identities=7% Similarity=0.037 Sum_probs=125.4
Q ss_pred CChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHH----hc
Q 003946 537 NRPREVTALLRDARSA-----GIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCA----QN 607 (784)
Q Consensus 537 g~~~~A~~~~~~m~~~-----g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~----~~ 607 (784)
|+++.|.+.+-.+.+. ...........++..|...++++...+.+.-+.+..... ......++..+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 6788888887766542 234456778889999999999999988887766543222 233444444332 22
Q ss_pred CcHHH--HHHHHHHHHh--cCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHH
Q 003946 608 HEAGL--MAKLLQEVKE--GQRIDC---GVHDWNNVIHFFCKKRLMQDAEKALKRMRSL--GHLPN---AQTFHSMVTGY 675 (784)
Q Consensus 608 ~~~~~--a~~~~~~~~~--~~~~~p---~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~a~ 675 (784)
...+. -..+.+.+.. .+.+-- .......|...|-..|++.+|.+++.++... |..+. ...|..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32221 1122221111 111111 1233467889999999999999999998643 22222 34667778889
Q ss_pred HHcCCCHHHHHHHHHHHHhcccCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 676 AAIGGKYTEVTELWGEMKSFASSTSMNFD--EELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 676 ~~~g~~~~~a~~~~~~m~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
...+ ++..|..+..++..........|+ ...|..++..+...+++.+|.+.|.+.-+
T Consensus 188 l~~~-d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKG-DYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHT-CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCC-CHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999 999999999987542222222232 34578889999999999999998888764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.18 E-value=19 Score=40.19 Aligned_cols=57 Identities=9% Similarity=-0.059 Sum_probs=47.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003946 456 KLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMH 515 (784)
Q Consensus 456 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 515 (784)
.-..-|...|+++.|+++-++....- +.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34455667899999999999988775 6678899999999999999999999888774
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.51 E-value=4.5 Score=41.57 Aligned_cols=71 Identities=11% Similarity=0.072 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHL-----AGVRASSSVY 526 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~ 526 (784)
....++.++...|++++|...+..+.... +.+...|..+|.++.+.|+..+|.+.|+...+ .|+.|+..+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~---P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34556777888889998888888888776 67888888899999999999998888887653 4788876553
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=84.50 E-value=0.0013 Score=67.55 Aligned_cols=121 Identities=14% Similarity=0.168 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
++.||--+-.+|...+.+..|.-.--.+. +.||. ...++.-|-..|.+++-+.+++.-... -......|+-|
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniI-----vhade--L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL 269 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 269 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence 55678888888888888877665555544 22332 334677777888888877777765522 13467778888
Q ss_pred HHHHHHcCChHHHHHHHHHHH-HcCCCC------CHHHHHHHHHHHHHcCChhHHHH
Q 003946 530 LKAYIEANRPREVTALLRDAR-SAGIQL------DASCYEALLQSKIVQKDTPGALH 579 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~-~~g~~p------~~~t~~~li~~~~~~g~~~~A~~ 579 (784)
.-.|+|-. .++..+-++.-. +-++.. ....|.-++-.|.+..+++.|..
T Consensus 270 aILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 270 AILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 88887753 333222222111 111111 22447777777777777776643
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.91 E-value=48 Score=34.51 Aligned_cols=100 Identities=13% Similarity=0.052 Sum_probs=71.0
Q ss_pred HHHHHHHhhhcCChhHHHHHHHhhhhC--CCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh---cCCChhhHHH
Q 003946 256 FNIALAGCLLFETTRKAEQLLDIMPRI--GVKAD---SNLLIIMAHIYERNGRREELRKLQRHIDEA---VNLSDIQFRQ 327 (784)
Q Consensus 256 ~~~ll~~~~~~g~~~~A~~l~~~m~~~--g~~pd---~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---~~~~~~~~~~ 327 (784)
...+...+...|++.+|..++..+... |.... ...+...+..|...+++..|..++..+... ..+....-..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345667788899999999999988632 32222 146677788899999999999998887542 2222222223
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003946 328 FYNCLLSCHLKFGDLNSASKMVLEMLQR 355 (784)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 355 (784)
.+..++..+...+++.+|...|.+..+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4777888888889999998888877663
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=81.73 E-value=0.064 Score=55.28 Aligned_cols=81 Identities=20% Similarity=0.076 Sum_probs=52.6
Q ss_pred CCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHH
Q 003946 250 KPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFY 329 (784)
Q Consensus 250 ~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~ 329 (784)
..++.||-.+-.+|...+.+..|...--.++-+ ||. ...++.-|-+.|.+++...+++.-......... ++
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ade--L~elv~~YE~~G~f~ELIsLlEaglglErAHmG----mF 266 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---ADE--LEELINYYQDRGYFEELITMLEAALGLERAHMG----MF 266 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SSC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH----HH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH----HH
Confidence 456678999999999999888876554444422 221 113455677888888888877776543333333 57
Q ss_pred HHHHHHHHhc
Q 003946 330 NCLLSCHLKF 339 (784)
Q Consensus 330 ~~li~~~~~~ 339 (784)
+-|.-.|+|-
T Consensus 267 TELaILYsKY 276 (624)
T 3lvg_A 267 TELAILYSKF 276 (624)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHhc
Confidence 7777777765
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=81.27 E-value=9.2 Score=32.61 Aligned_cols=112 Identities=16% Similarity=0.085 Sum_probs=72.3
Q ss_pred cccCCChHHHHHHHHHHHhccch------hhHHHHHHHhcccCCCCCc----hhHHHHHHHHHhccChhhHHHHHHHHHH
Q 003946 84 LVQARDPAKLSAEIENAINEHRY------GDAWKLYEQHMQMDGFPRK----TLVNKILTSFVESLDSKWLEKAYGLVEQ 153 (784)
Q Consensus 84 ~~~~~~~~~~~~li~~~~~~~~~------~~A~~l~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 153 (784)
...+.|+.+|-..+...-+.|++ +..+++|++... ..+|+. ..|-.+.--|+......+.++|.+++..
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45678999999999888888999 888899998776 334433 2233333333332222344445556666
Q ss_pred HHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCC
Q 003946 154 AFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPP 199 (784)
Q Consensus 154 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 199 (784)
+....+. . ..++..-...-.+.|+++.|++++......+.+|.
T Consensus 86 a~~~hKk--F-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 86 ARANCKK--F-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHCTT--B-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHhHH--H-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 5544122 2 55555566667789999999999999998877654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=81.23 E-value=6.2 Score=40.57 Aligned_cols=72 Identities=10% Similarity=0.051 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-ccCCCCCCCHHHH
Q 003946 635 NVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSF-ASSTSMNFDEELL 708 (784)
Q Consensus 635 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~-~~~~~~~p~~~~~ 708 (784)
.++..+...|++++|...+...... ..-+...|..+|.++...| +..+|.+.|+...+. ..+.|+.|++.+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~G-r~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSD-RQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3444444455555555444444432 1124444555555555555 555555555444331 1123455554443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.23 E-value=15 Score=30.52 Aligned_cols=63 Identities=3% Similarity=0.083 Sum_probs=50.7
Q ss_pred ChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 003946 268 TTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLS 334 (784)
Q Consensus 268 ~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~ 334 (784)
|.-+..+-++.+....+.|++.+..+.+.+|-+.+++..|.++|+-++.+...... +|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~----iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKE----IYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTT----HHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchh----hHHHHHH
Confidence 44466677778888889999999999999999999999999999999987544433 4666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 784 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.84 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.42 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.39 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.98 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.93 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.92 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.91 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.9 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.85 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.69 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.65 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.6 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.38 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.21 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.1 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.97 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.92 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.9 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.89 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.89 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.77 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.76 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.69 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.66 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.64 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.53 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.51 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.47 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.41 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.38 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.36 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.35 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.11 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.09 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.04 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.97 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.97 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.93 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.85 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.85 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.83 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.8 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.73 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.5 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.4 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.29 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.26 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.24 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.83 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.32 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.6 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.54 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.35 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.93 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.53 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.06 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 83.49 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 80.62 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=6.9e-17 Score=169.10 Aligned_cols=379 Identities=12% Similarity=0.021 Sum_probs=221.2
Q ss_pred HHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcC
Q 003946 261 AGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFG 340 (784)
Q Consensus 261 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 340 (784)
..+.+.|++++|++.++++.+.. +-+...+..+..+|.+.|++++|...|+...+.++.... +|..+..+|.+.|
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE----AYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHhhhhc
Confidence 45668899999999999998753 234678888999999999999999999999887555444 6999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHH
Q 003946 341 DLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEA 420 (784)
Q Consensus 341 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (784)
++++|+..+......+.................. .. .
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~----~ 118 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG---------------------------------------DM----E 118 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHS---------------------------------------CS----S
T ss_pred cccccccccccccccccccccccccccccccccc---------------------------------------cc----c
Confidence 9999999999888753200000000000000000 00 0
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 003946 421 EVKRVLQTLLGMLQKQVELITTEHGILQPTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCIS 500 (784)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~ 500 (784)
........ ......................+....+...+....... +.+...+..+...+..
T Consensus 119 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~ 181 (388)
T d1w3ba_ 119 GAVQAYVS--------------ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ---PNFAVAWSNLGCVFNA 181 (388)
T ss_dssp HHHHHHHH--------------HHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHT
T ss_pred cccccccc--------------ccccccccccccccccccccccchhhhhHHHHHHhhccC---cchhHHHHhhcccccc
Confidence 00000000 000012233344444455555556666666555555443 3344455555566666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 003946 501 LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHL 580 (784)
Q Consensus 501 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 580 (784)
.|++++|...++...+.. +-+...+..+...+...|++++|...+++....+ ..+...+..+...+.+.|++++|+..
T Consensus 182 ~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 259 (388)
T d1w3ba_ 182 QGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDT 259 (388)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 666666666666655543 2245556666666666666666666666665543 23455555566666666666666666
Q ss_pred HHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003946 581 FKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLG 660 (784)
Q Consensus 581 ~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g 660 (784)
|++..+.. |.+..++..+...+...|++++|.+.++......+ .+...+..+...|...|++++|++.|++..+.
T Consensus 260 ~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~- 334 (388)
T d1w3ba_ 260 YRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP--THADSLNNLANIKREQGNIEEAVRLYRKALEV- 334 (388)
T ss_dssp HHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC--ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 66655543 55555666666666666666666666665555432 24445555666666666666666666665542
Q ss_pred CCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcC
Q 003946 661 HLP-NAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNF-DEELLDSVLYTFVRGG 719 (784)
Q Consensus 661 ~~p-~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g 719 (784)
.| +..+|..+...|...| ++++|...+++..+ +.| +...|..|..+|.+.|
T Consensus 335 -~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~------l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 335 -FPEFAAAHSNLASVLQQQG-KLQEALMHYKEAIR------ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTTT-CCHHHHHHHHHHHT------TCTTCHHHHHHHHHHHHHTC
T ss_pred -CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcC
Confidence 34 3445555555566666 66666666666554 223 3445555655555554
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=6.5e-17 Score=169.32 Aligned_cols=353 Identities=13% Similarity=0.027 Sum_probs=251.9
Q ss_pred hhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHH
Q 003946 253 TNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCL 332 (784)
Q Consensus 253 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~l 332 (784)
...|..+...+.+.|++++|+..|+...+.. +-+..++..+..+|.+.|++++|...+....+....... .+...
T Consensus 33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ 107 (388)
T d1w3ba_ 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID----GYINL 107 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccccccccccccccccc----ccccc
Confidence 4455666666667777777777777766543 223456666777777777777777777776665444433 24444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccCCCCCCCccccCCCCccccccccccccccchhhhhhh
Q 003946 333 LSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNAVGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKD 412 (784)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (784)
.......+....+....................... .
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~--- 144 (388)
T d1w3ba_ 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN----------------------------------------L--- 144 (388)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH----------------------------------------H---
T ss_pred cccccccccccccccccccccccccccccccccccc----------------------------------------c---
Confidence 444555555555554444333321100000000000 0
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHH
Q 003946 413 RKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAAL 491 (784)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~ 491 (784)
................... ..| +...+..+...+...|++++|...+.+..... +-+...+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~ 206 (388)
T d1w3ba_ 145 LKALGRLEEAKACYLKAIE---------------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAY 206 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHH---------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred ccccchhhhhHHHHHHhhc---------------cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC---cccHHHH
Confidence 0000000000000000000 133 56788888999999999999999999998876 5567788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003946 492 GHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQ 571 (784)
Q Consensus 492 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 571 (784)
..+...+...|++++|...++.....+. .+...+..+...|.+.|++++|...|++..+.. +-+..+|..+...+...
T Consensus 207 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 284 (388)
T d1w3ba_ 207 INLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 8999999999999999999999988753 467888889999999999999999999998764 23577899999999999
Q ss_pred CChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003946 572 KDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEK 651 (784)
Q Consensus 572 g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~ 651 (784)
|++++|++.++...... |.+...+..+...+.+.|++++|.+.|++..+..+ -+..+|..+...|.+.|++++|.+
T Consensus 285 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~ 360 (388)
T d1w3ba_ 285 GSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp SCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT--TCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CCHHHHHHHHHhhhccC--CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999988765 77788999999999999999999999999987543 246778999999999999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHHcC
Q 003946 652 ALKRMRSLGHLPN-AQTFHSMVTGYAAIG 679 (784)
Q Consensus 652 ~~~~m~~~g~~p~-~~~~~~ll~a~~~~g 679 (784)
.|++..+ +.|+ ...|..+..+|.+.|
T Consensus 361 ~~~~al~--l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 361 HYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 9999987 4674 778888888888776
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=8.2e-11 Score=118.97 Aligned_cols=258 Identities=12% Similarity=0.000 Sum_probs=191.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003946 457 LVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEA 536 (784)
Q Consensus 457 li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 536 (784)
....+.+.|++++|...|+++.+.. +-+..+|..+..++...|++++|...|.+..+.. +-+...+..+...|...
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD---PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 4556789999999999999999876 5677889999999999999999999999998875 23688899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH----------------HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHH
Q 003946 537 NRPREVTALLRDARSAGIQLDAS----------------CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEML 600 (784)
Q Consensus 537 g~~~~A~~~~~~m~~~g~~p~~~----------------t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 600 (784)
|++++|.+.+++..... |+.. .....+..+...+...+|.+.+.+..+......+...+..+
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l 178 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 178 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 99999999999987642 2211 11122233444556777888887777654334456677778
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC
Q 003946 601 VKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIG 679 (784)
Q Consensus 601 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g 679 (784)
...+...|++++|...|+......+- +...|..+...|...|++++|.+.|++..+. .| +..+|..+..+|...|
T Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g 254 (323)
T d1fcha_ 179 GVLFNLSGEYDKAVDCFTAALSVRPN--DYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLG 254 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhcccccccccccc--cccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHHHHHCC
Confidence 88888888888888888887765432 4667888888888888888888888888774 45 4667788888888888
Q ss_pred CCHHHHHHHHHHHHhcccCCC------CCCCHHHHHHHHHHHHhcCChHHHH
Q 003946 680 GKYTEVTELWGEMKSFASSTS------MNFDEELLDSVLYTFVRGGFFARAN 725 (784)
Q Consensus 680 ~~~~~a~~~~~~m~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~A~ 725 (784)
++++|...|++..+..++.. .......|..+-.++...|+.+.+.
T Consensus 255 -~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 255 -AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred -CHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888776433211 1122345666666666666665443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.2e-10 Score=115.67 Aligned_cols=231 Identities=11% Similarity=0.017 Sum_probs=178.5
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----
Q 003946 448 QP-TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRA----- 521 (784)
Q Consensus 448 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~----- 521 (784)
.| +..+|..+..++...|++++|...|.+..+.. +-+...+..+...|...|++++|.+.++.........
T Consensus 49 ~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 125 (323)
T d1fcha_ 49 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK---PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 125 (323)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc---cccccccccccccccccccccccccchhhHHHhccchHHHHH
Confidence 44 56789999999999999999999999998876 5567788889999999999999999999988653110
Q ss_pred ---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCC
Q 003946 522 ---------SSSVYASLLKAYIEANRPREVTALLRDARSAGI-QLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPR 591 (784)
Q Consensus 522 ---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 591 (784)
+.......+..+...+...+|...|.+..+... .++...+..+...+...|++++|+..|++..... |
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p 203 (323)
T d1fcha_ 126 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--P 203 (323)
T ss_dssp ---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred hhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--c
Confidence 011112233345566778889999988765432 3467788889999999999999999999988765 7
Q ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------CC
Q 003946 592 SGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSL----------GH 661 (784)
Q Consensus 592 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----------g~ 661 (784)
.+..+|..+...+.+.|++++|.+.|+...+.++- +..+|..+..+|.+.|++++|++.|++.++. ..
T Consensus 204 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 281 (323)
T d1fcha_ 204 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG--YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 281 (323)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred ccccchhhhhhcccccccchhHHHHHHHHHHHhhc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhH
Confidence 78889999999999999999999999998876532 4667999999999999999999999998762 01
Q ss_pred CCCHHHHHHHHHHHHHcCCCHHHHH
Q 003946 662 LPNAQTFHSMVTGYAAIGGKYTEVT 686 (784)
Q Consensus 662 ~p~~~~~~~ll~a~~~~g~~~~~a~ 686 (784)
......|..+-.++...+ +.+.+.
T Consensus 282 ~~~~~~~~~l~~al~~~~-~~d~~~ 305 (323)
T d1fcha_ 282 AMSENIWSTLRLALSMLG-QSDAYG 305 (323)
T ss_dssp CCCHHHHHHHHHHHHHHT-CGGGHH
T ss_pred HHHHHHHHHHHHHHHHcC-CHHHHH
Confidence 112234555555666666 655443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.5e-07 Score=93.65 Aligned_cols=185 Identities=8% Similarity=-0.025 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAG-KTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYAS 528 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 528 (784)
+...|+....++...| ++++|+..+++..+.. +-+..+|..+...+.+.|++++|...++.+.+.. +-+...|..
T Consensus 76 ~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~---p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~ 151 (315)
T d2h6fa1 76 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQH 151 (315)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHH
T ss_pred ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH---HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHH
Confidence 4567777777777765 4788888888877765 5567778888888888888888888888888764 336788888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------hhHHHHHHHHhHhcCCCCCcHHHHHHHHH
Q 003946 529 LLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKD------TPGALHLFKEMKESKIPRSGHQEFEMLVK 602 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~~~~~~~~~~ll~ 602 (784)
+...+.+.|++++|...+++..+... -+...|+.+...+.+.+. +++|++.+.+..+.. |.+...|..+..
T Consensus 152 ~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~--P~~~~~~~~l~~ 228 (315)
T d2h6fa1 152 RQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKG 228 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC--CCchHHHHHHHH
Confidence 88888888888888888888877642 356677766666655554 467777777776655 666667766666
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 003946 603 GCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCK 642 (784)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~ 642 (784)
.+.+.+ .+++.+.++...+..+...+...+..++..|..
T Consensus 229 ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 229 ILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 554443 456666666665544333345555666665543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=2.7e-07 Score=91.60 Aligned_cols=187 Identities=12% Similarity=0.048 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003946 467 TKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALL 546 (784)
Q Consensus 467 ~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 546 (784)
.++|..+|++..+.. .+.+...|...+....+.|+++.|..+|+.+.+........+|...+..+.+.|+++.|..+|
T Consensus 80 ~~~a~~i~~ral~~~--~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 80 SDEAANIYERAISTL--LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHTTT--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 355556666655443 233444455555555566666666666666655432223445666666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHH-HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 003946 547 RDARSAGIQLDASCYEALLQS-KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQR 625 (784)
Q Consensus 547 ~~m~~~g~~p~~~t~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 625 (784)
+++.+.+.. +...|...... +...|+.+.|..+|+.+.+.. |.+...+...+..+.+.|+++.|..+|+......+
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 666554321 22222222221 222355555666666555542 44444555555555555555555555555444333
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 626 IDCG--VHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 626 ~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
..|+ ...|...+.--...|+.+.+.++++++.+
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222 23455555544455555555555554443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=1.5e-06 Score=87.61 Aligned_cols=313 Identities=12% Similarity=0.059 Sum_probs=187.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCChhh-HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 003946 294 MAHIYERNGRREELRKLQRHIDEAVNLSDIQ-FRQFYNCLLSCHLKFGDLNSASKMVLEMLQRAKEARNSLAAAMLPFNA 372 (784)
Q Consensus 294 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 372 (784)
....+...|++++|.+++++..+..+.+... ....++.+...|...|++++|...|++..+....
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~-------------- 83 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-------------- 83 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--------------
Confidence 3455677888888888888876653332221 1124777888899999999999999888764320
Q ss_pred hccCCCCCCCccccCCCCccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCcCCCHH
Q 003946 373 VGVNNRTPSEQNVNCTNSVDLENSGIIENHILSYEDFTKDRKFVALEAEVKRVLQTLLGMLQKQVELITTEHGILQPTEK 452 (784)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 452 (784)
. +.......
T Consensus 84 ---------------------------------~--------------------------------------~~~~~~~~ 92 (366)
T d1hz4a_ 84 ---------------------------------H--------------------------------------DVWHYALW 92 (366)
T ss_dssp ---------------------------------T--------------------------------------TCHHHHHH
T ss_pred ---------------------------------h--------------------------------------cchHHHHH
Confidence 0 00001124
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCCH
Q 003946 453 IYIKLVKAFLEAGKTKELTHFLIKAEKE----NLQVSHDD-AALGHVITLCISLGWLDQAHDLLDEMHLAGV----RASS 523 (784)
Q Consensus 453 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~~~~ 523 (784)
++..+...+...|++..+...+.+.... ..+..+.. ..+..+...+...|+++.+...+........ ....
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 5566777888899999998888876431 11012222 2445566777888999999988888775432 2234
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHH
Q 003946 524 SVYASLLKAYIEANRPREVTALLRDARSA--GIQLD----ASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEF 597 (784)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 597 (784)
..+..+...+...++..++...+.+.... ..... ...+..+...+...|+.++|...+++........
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------ 246 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN------ 246 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc------
Confidence 55666667777888888888777765431 11111 1234445555666677777777766554322110
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHH
Q 003946 598 EMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS----LGHLPN-AQTFHSMV 672 (784)
Q Consensus 598 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll 672 (784)
.......+..+...|...|++++|.+.+++... .+..|+ ..++..+.
T Consensus 247 ----------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 298 (366)
T d1hz4a_ 247 ----------------------------NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 298 (366)
T ss_dssp ----------------------------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHH
Confidence 111234455667777777888888777776653 233443 34566666
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcccCCCCCC----CHHHHHHHHHHHHhcCChHHHHH
Q 003946 673 TGYAAIGGKYTEVTELWGEMKSFASSTSMNF----DEELLDSVLYTFVRGGFFARANE 726 (784)
Q Consensus 673 ~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~ 726 (784)
..|...| ++++|.+.+++..+.....+... ....+..++..+...++.+++.+
T Consensus 299 ~~~~~~g-~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 299 QLYWQAG-RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHT-CHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHCC-CHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 7777778 88888888877655433323211 12234445555566666555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=7.5e-07 Score=89.99 Aligned_cols=273 Identities=10% Similarity=-0.024 Sum_probs=199.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHH
Q 003946 457 LVKAFLEAGKTKELTHFLIKAEKENLQVSHD-----DAALGHVITLCISLGWLDQAHDLLDEMHLAGV-RAS----SSVY 526 (784)
Q Consensus 457 li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~ 526 (784)
....+...|++++|.+++++..... +.+ ...+..+...|...|++++|...|++..+... .++ ...+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~---~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEEL---PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC---CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC---cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 4456789999999999999987754 222 23566777889999999999999998875321 112 3456
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHhHhcCC---CCCcHHH
Q 003946 527 ASLLKAYIEANRPREVTALLRDARS----AGIQLD---ASCYEALLQSKIVQKDTPGALHLFKEMKESKI---PRSGHQE 596 (784)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~ 596 (784)
..+...+...|++..+...+.+... .+.... ...+..+...+...|+++.+...+........ .......
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 6777888999999999999987643 211111 23556667788899999999999988776432 1233455
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHH
Q 003946 597 FEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDC-----GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP---NAQTF 668 (784)
Q Consensus 597 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~ 668 (784)
+......+...++...+...+........... ....+..+...+...|+.++|...+++........ ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 66677778888999999888876554322111 13356777788899999999999998876543222 24556
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003946 669 HSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFD-EELLDSVLYTFVRGGFFARANEVVAMMEE 733 (784)
Q Consensus 669 ~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 733 (784)
..+..++...| ++++|...+++........+..|+ ...+..+...|.+.|++++|.+.+++..+
T Consensus 255 ~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 255 RNIARAQILLG-EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67788899999 999999999998765444455554 45688899999999999999999998764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=2.2e-07 Score=92.25 Aligned_cols=94 Identities=11% Similarity=-0.019 Sum_probs=56.5
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCCh-hHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCChhhHHHHHHHH
Q 003946 255 TFNIALAGCLLFETTRKAEQLLDIMPRIGVKADS-NLLIIMAHIYERNG-RREELRKLQRHIDEAVNLSDIQFRQFYNCL 332 (784)
Q Consensus 255 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~li~~~~~~g-~~~~A~~l~~~~~~~~~~~~~~~~~~~~~l 332 (784)
.|+.+-..+.+.+.+++|+++++.+++. .|+. ..|+....++...| ++++|...++...+.++.+.. +|+.+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~----a~~~~ 118 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ----VWHHR 118 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhh----HHHHH
Confidence 4455545555666667777777666664 3433 44566655665554 366666666666665444443 46666
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 003946 333 LSCHLKFGDLNSASKMVLEMLQ 354 (784)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~m~~ 354 (784)
...+.+.|++++|++.|+++.+
T Consensus 119 ~~~~~~l~~~~eAl~~~~kal~ 140 (315)
T d2h6fa1 119 RVLVEWLRDPSQELEFIADILN 140 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHH
T ss_pred hHHHHhhccHHHHHHHHhhhhh
Confidence 6666666666666666666655
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.85 E-value=5.4e-07 Score=89.29 Aligned_cols=219 Identities=9% Similarity=0.029 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 468 KELTHFLIKAEKENLQVSHDDAALGHVITLCIS--------------LGWLDQAHDLLDEMHLAGVRASSSVYASLLKAY 533 (784)
Q Consensus 468 ~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~--------------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 533 (784)
+.+..+|+++.... +.+...|...+.-+-. .+..++|..+|+...+...+.+...|...+..+
T Consensus 33 ~Rv~~vyerAl~~~---~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~ 109 (308)
T d2onda1 33 KRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34555666666553 3444545444433222 223567777777777654455667777777777
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHH-HHhcCcHHH
Q 003946 534 IEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG-CAQNHEAGL 612 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~-~~~~~~~~~ 612 (784)
.+.|+.+.|..+|+++.+.........|...+..+.+.|+.+.|.++|+.+.+.+ |.+...|...... +...|+.+.
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~--~~~~~~~~~~a~~e~~~~~~~~~ 187 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhccCHHH
Confidence 7888888888888887765332234567777777777778888888887777655 3333333333322 233456666
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCCCHHHHHHHH
Q 003946 613 MAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLG-HLPN--AQTFHSMVTGYAAIGGKYTEVTELW 689 (784)
Q Consensus 613 a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~a~~~~g~~~~~a~~~~ 689 (784)
|..+|+.+....+ .+...|...++.+.+.|+.++|..+|++..... ..|+ ...|...+.--...| +.+.+..+.
T Consensus 188 a~~i~e~~l~~~p--~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G-~~~~~~~~~ 264 (308)
T d2onda1 188 AFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG-DLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS-CHHHHHHHH
T ss_pred HHHHHHHHHHhhh--hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 6666666665432 134456666666666666666666666665542 2222 334555555445556 666666666
Q ss_pred HHHHh
Q 003946 690 GEMKS 694 (784)
Q Consensus 690 ~~m~~ 694 (784)
+++.+
T Consensus 265 ~r~~~ 269 (308)
T d2onda1 265 KRRFT 269 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=5.1e-07 Score=86.92 Aligned_cols=97 Identities=11% Similarity=-0.090 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASL 529 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 529 (784)
++.+|+.+..+|.+.|++++|+..|++..+.. +-+..++..+..++...|++++|...|+...+.. +.+......+
T Consensus 70 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 145 (259)
T d1xnfa_ 70 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWL 145 (259)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH---hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHH
Confidence 34555556666666666666666666655544 2334445555555566666666666666555543 1233333333
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 003946 530 LKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~m~ 550 (784)
..++.+.+..+.+..+.....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 146 YLAEQKLDEKQAKEVLKQHFE 166 (259)
T ss_dssp HHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHhh
Confidence 333344444444444433333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=6.3e-07 Score=86.20 Aligned_cols=200 Identities=9% Similarity=-0.076 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 451 EKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
..+|..+...|.+.|++++|...|++..+.. +-+..+|..+..++.+.|++++|...|++..+... -+..++..+.
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg 112 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRG 112 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC---CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHH
Confidence 3577778888999999999999999988876 56778888899999999999999999999988752 3567788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhc---
Q 003946 531 KAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQN--- 607 (784)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~--- 607 (784)
.+|...|++++|...|+...+.. +.+......+..++.+.+..+.+..+..........+. .+.. +..+...
T Consensus 113 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~ 187 (259)
T d1xnfa_ 113 IALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW---GWNI-VEFYLGNISE 187 (259)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST---HHHH-HHHHTTSSCH
T ss_pred HHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh---hhhH-HHHHHHHHHH
Confidence 89999999999999999887764 23444444444455555555555555555544332222 1111 1111111
Q ss_pred -CcHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003946 608 -HEAGLMAKLLQEVKEGQRIDC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN 664 (784)
Q Consensus 608 -~~~~~a~~~~~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 664 (784)
+..+.+...+..... ..| ...+|..+...|...|++++|.+.|++.+.. .|+
T Consensus 188 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~ 241 (259)
T d1xnfa_ 188 QTLMERLKADATDNTS---LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 241 (259)
T ss_dssp HHHHHHHHHHCCSHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred HHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCC
Confidence 112222222111111 111 1235666777777888888888888877763 454
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.60 E-value=2.5e-07 Score=93.13 Aligned_cols=154 Identities=8% Similarity=-0.112 Sum_probs=80.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003946 459 KAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANR 538 (784)
Q Consensus 459 ~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 538 (784)
..+...+.+++|+..++.....+ +-+...|+.+...+.+.|++++|...+....+.. | ....+...+...+.
T Consensus 152 ~~~~~~~~~~~Al~~~~~~i~~~---p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~---~~~~~~~~~~~l~~ 223 (334)
T d1dcea1 152 VAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--L---KELELVQNAFFTDP 223 (334)
T ss_dssp HHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--H---HHHHHHHHHHHHCS
T ss_pred HHHHhccccHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--H---HHHHHHHHHHHhcc
Confidence 44455666777777776666555 4556666666666666666665544443333220 0 01122233444455
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHH
Q 003946 539 PREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQ 618 (784)
Q Consensus 539 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 618 (784)
.+++...+....... .++...+..+...+...++.++|...+.+..... |.+..++..+...+...|++++|.+.++
T Consensus 224 ~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~eA~~~~~ 300 (334)
T d1dcea1 224 NDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFS 300 (334)
T ss_dssp SCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTGGGHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555554432 2233344444555555555666666655554433 4444455555555555555555555555
Q ss_pred HHHhc
Q 003946 619 EVKEG 623 (784)
Q Consensus 619 ~~~~~ 623 (784)
...+.
T Consensus 301 ~ai~l 305 (334)
T d1dcea1 301 TLKAV 305 (334)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.59 E-value=1.6e-07 Score=94.62 Aligned_cols=265 Identities=6% Similarity=-0.125 Sum_probs=188.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH----------HHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003946 455 IKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITL----------CISLGWLDQAHDLLDEMHLAGVRASSS 524 (784)
Q Consensus 455 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~----------~~~~g~~~~a~~~~~~m~~~g~~~~~~ 524 (784)
..++......+..++|++++.+..+.. +-+...|+..-.. +...|++++|..+++...+.. +-+..
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~---P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~ 108 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYG 108 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHH
Confidence 333333333344589999999998765 3344444332222 223445788999999998875 34778
Q ss_pred HHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHH
Q 003946 525 VYASLLKAYIEANR--PREVTALLRDARSAGIQLDASCYEALL-QSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLV 601 (784)
Q Consensus 525 ~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll 601 (784)
.|..+..++...++ .++|...++++.+.. .++...+...+ ..+...+..++|+..++.+.+.. |.+...|..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~--p~~~~a~~~l~ 185 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRS 185 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence 88888888877765 789999999998764 34566665544 56667899999999999988876 78889999999
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCC
Q 003946 602 KGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAAIGGK 681 (784)
Q Consensus 602 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~ 681 (784)
..+.+.|++++|...+....... |+ .......+...+..+++...+....... .++...+..+...+...+ +
T Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~---~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~-~ 257 (334)
T d1dcea1 186 CLLPQLHPQPDSGPQGRLPENVL---LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQ-S 257 (334)
T ss_dssp HHHHHHSCCCCSSSCCSSCHHHH---HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHH-H
T ss_pred HHHHHhcCHHHHHHHHHHhHHhH---HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHh-h
Confidence 99999998887766554443321 11 1223344566677778888888887752 334555666777777788 9
Q ss_pred HHHHHHHHHHHHhcccCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 003946 682 YTEVTELWGEMKSFASSTSMNF-DEELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYK 742 (784)
Q Consensus 682 ~~~a~~~~~~m~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 742 (784)
+++|...+.+... ..| +...|..+...|...|++++|.+.+++..+ +.|+...
T Consensus 258 ~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~ 311 (334)
T d1dcea1 258 ELESCKELQELEP------ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA 311 (334)
T ss_dssp HHHHHHHHHHHCT------TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHH
T ss_pred HHHHHHHHHHHHh------hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHH
Confidence 9999999888765 223 456788899999999999999999999988 4675443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.38 E-value=6.7e-06 Score=80.28 Aligned_cols=244 Identities=10% Similarity=-0.016 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003946 469 ELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRD 548 (784)
Q Consensus 469 ~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 548 (784)
++.+++.+..+.+ +|....+. ++.+ ...+++++|.++|... ...|...|++++|...|.+
T Consensus 3 ~~~~~l~~aek~~---~~~~~~~~-~~~~-~~~~~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~k 62 (290)
T d1qqea_ 3 DPVELLKRAEKKG---VPSSGFMK-LFSG-SDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (290)
T ss_dssp CHHHHHHHHHHHS---SCCCTHHH-HHSC-CSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CcchhHHH-HhcC-CccccHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHH
Confidence 4556677766665 44443121 1110 1122456676665554 4567788888888888887
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHhc----CCCCCcHHHHHHHHHHHHh-cCcHHHHHHHHH
Q 003946 549 ARSA----GIQL-DASCYEALLQSKIVQKDTPGALHLFKEMKES----KIPRSGHQEFEMLVKGCAQ-NHEAGLMAKLLQ 618 (784)
Q Consensus 549 m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~ 618 (784)
..+. +-.+ -..+|..+..+|.+.|++++|++.+++..+. +.......++..+...|.. .|++++|.+.++
T Consensus 63 A~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 142 (290)
T d1qqea_ 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHH
Confidence 7542 1111 1346788888888888888888888865542 2212223455566666644 688999999887
Q ss_pred HHHhcCCCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CH-HHHHHHHHHHHHcCCCHHHHHHH
Q 003946 619 EVKEGQRID---C-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-----NA-QTFHSMVTGYAAIGGKYTEVTEL 688 (784)
Q Consensus 619 ~~~~~~~~~---p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~-~~~~~ll~a~~~~g~~~~~a~~~ 688 (784)
...+..... + -..+|..+...|...|++++|.+.|++........ .. ..+...+..+...| +++.|...
T Consensus 143 ~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-d~~~A~~~ 221 (290)
T d1qqea_ 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT-DAVAAART 221 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhc-cHHHHHHH
Confidence 765421111 1 13468889999999999999999999988753111 11 12334444566778 99999999
Q ss_pred HHHHHhcccCCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHh
Q 003946 689 WGEMKSFASSTSMNFDEELLDSVLYTFVR--GGFFARANEVVAMMEE 733 (784)
Q Consensus 689 ~~~m~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~ 733 (784)
+++..+..+...-.........++.++.. .+++++|.+-|+++.+
T Consensus 222 ~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 99987732111111123345666777665 2458888888876553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=2.9e-05 Score=70.06 Aligned_cols=123 Identities=13% Similarity=0.015 Sum_probs=78.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHH
Q 003946 532 AYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAG 611 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~ 611 (784)
.+...|++++|++.|+++. .|+..+|..+-..|...|++++|++.|++..+.. |.....|..+..++.+.|+++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhccHH
Confidence 3455666666666665542 4556666666666666666666666666666544 555666666666666666666
Q ss_pred HHHHHHHHHHhcCCC-------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003946 612 LMAKLLQEVKEGQRI-------------DC-GVHDWNNVIHFFCKKRLMQDAEKALKRMRSLG 660 (784)
Q Consensus 612 ~a~~~~~~~~~~~~~-------------~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g 660 (784)
+|.+.|++.....+- .+ ...++..+..+|.+.|++++|.+.+++..+..
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 666666665432110 01 12456677778899999999999998887753
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.10 E-value=0.00011 Score=71.38 Aligned_cols=123 Identities=8% Similarity=-0.045 Sum_probs=67.7
Q ss_pred cCChhHHHHHHHHhHhc----CCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHH
Q 003946 571 QKDTPGALHLFKEMKES----KIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG-----VHDWNNVIHFFC 641 (784)
Q Consensus 571 ~g~~~~A~~~~~~m~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~y~~li~~~~ 641 (784)
.|++++|++.+++..+. +..+....++..+...+...|++++|.+.|+.+.......+. ...|..++..+.
T Consensus 131 ~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (290)
T d1qqea_ 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210 (290)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHH
Confidence 35556665555554321 111112334555666666777777777777666554322221 123445556677
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHh
Q 003946 642 KKRLMQDAEKALKRMRSLGHL-PN---AQTFHSMVTGYAAI--GGKYTEVTELWGEMKS 694 (784)
Q Consensus 642 ~~g~~~~A~~~~~~m~~~g~~-p~---~~~~~~ll~a~~~~--g~~~~~a~~~~~~m~~ 694 (784)
..|+++.|...+++..+.... ++ ......++.++... + .+++|...|+++.+
T Consensus 211 ~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e-~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 211 AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE-QLSEHCKEFDNFMR 268 (290)
T ss_dssp HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT-THHHHHHHHTTSSC
T ss_pred HhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHhh
Confidence 889999999999988764211 11 22345566666542 3 46777777665543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=8.2e-05 Score=60.71 Aligned_cols=87 Identities=7% Similarity=-0.039 Sum_probs=43.3
Q ss_pred HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003946 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
+...|++++|+..|++..+.. |.+...|..+..++.+.|++++|...++...+.++ .+...|..+..+|...|+++
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhcc--chhhHHHHHHHHHHHccCHH
Confidence 344455555555555544433 44444444444455555555555555544444332 23444555555555555555
Q ss_pred HHHHHHHHHHh
Q 003946 648 DAEKALKRMRS 658 (784)
Q Consensus 648 ~A~~~~~~m~~ 658 (784)
+|+..|++..+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55555555554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=0.00011 Score=63.85 Aligned_cols=27 Identities=4% Similarity=-0.088 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 632 DWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 632 ~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
+|..+..+|...|++++|.+.+++...
T Consensus 80 a~~~~g~~~~~~g~~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 80 GYYRRAASNMALGKFRAALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=0.00018 Score=58.53 Aligned_cols=85 Identities=13% Similarity=0.021 Sum_probs=33.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 003946 499 ISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGAL 578 (784)
Q Consensus 499 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 578 (784)
.+.|++++|...|++..+.. +-+...|..+..+|.+.|++++|+..+++..+.+ +.+...|..+..++...|++++|+
T Consensus 14 ~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~A~ 91 (117)
T d1elwa_ 14 LSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAK 91 (117)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHHHH
Confidence 33344444444444443332 1233334444444444444444444444443332 123333444444444444444444
Q ss_pred HHHHHhH
Q 003946 579 HLFKEMK 585 (784)
Q Consensus 579 ~~~~~m~ 585 (784)
..|++..
T Consensus 92 ~~~~~a~ 98 (117)
T d1elwa_ 92 RTYEEGL 98 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=0.00017 Score=64.87 Aligned_cols=140 Identities=16% Similarity=0.066 Sum_probs=87.8
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCCH
Q 003946 604 CAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLP-NAQTFHSMVTGYAAIGGKY 682 (784)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~ 682 (784)
+...|+++.|.+.|..+. .|+..+|..+..+|...|++++|++.|++.++. .| +...|..+..+|.+.| ++
T Consensus 15 ~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g-~~ 86 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTE-KY 86 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT-CH
T ss_pred HHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhc-cH
Confidence 444555666665555431 245556666777777777777777777777764 34 4666666677777777 77
Q ss_pred HHHHHHHHHHHhcccCC--------C--CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 003946 683 TEVTELWGEMKSFASST--------S--MNFD-EELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDKYKYRTLFLKYH 751 (784)
Q Consensus 683 ~~a~~~~~~m~~~~~~~--------~--~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~ 751 (784)
++|...|++.....+.. + ..++ ..++..+..+|.+.|++++|.+.+.+..+....|+.......+..+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~ 166 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 77777777665421110 0 1111 35666778888999999999999998887655555555555454433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.89 E-value=0.0042 Score=58.58 Aligned_cols=99 Identities=6% Similarity=-0.122 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhcccCCC
Q 003946 629 GVHDWNNVIHFFCK----KRLMQDAEKALKRMRSLGHLPNAQTFHSMVTGYAA----IGGKYTEVTELWGEMKSFASSTS 700 (784)
Q Consensus 629 ~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~~~~~a~~~~~~m~~~~~~~~ 700 (784)
+...+..|...|.. ..+...+...++...+.| +......+-..|.. .. ++++|...|++..+ .|
T Consensus 141 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~-d~~~A~~~~~~aa~----~g 212 (265)
T d1ouva_ 141 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATK-NFKEALARYSKACE----LE 212 (265)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCC-CHHHHHHHHHHHHH----TT
T ss_pred ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCccccc-chhhhhhhHhhhhc----cc
Confidence 34445555555553 344555666666655543 34444444434433 34 67777777777665 22
Q ss_pred CCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCC
Q 003946 701 MNFDEELLDSVLYTFVR----GGFFARANEVVAMMEEGKMFI 738 (784)
Q Consensus 701 ~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p 738 (784)
++..+..|...|.+ ..+.++|.++|++..+.|-.+
T Consensus 213 ---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 213 ---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp ---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred ---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 34455556666654 235677777777777666443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.89 E-value=0.01 Score=57.30 Aligned_cols=56 Identities=9% Similarity=0.125 Sum_probs=31.6
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003946 285 KADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLSCHLKFGDLNSASKMVLEM 352 (784)
Q Consensus 285 ~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 352 (784)
.||..-...+.+-|.+.|.++.|..+|..+.. |..++..|.+.++++.|.+++.+.
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d------------~~rl~~~~v~l~~~~~avd~~~k~ 66 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN------------FGRLASTLVHLGEYQAAVDGARKA 66 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC------------HHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC------------HHHHHHHHHhhccHHHHHHHHHHc
Confidence 35666666777888899999999988876654 888888889999988888876533
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=0.00068 Score=58.54 Aligned_cols=95 Identities=8% Similarity=-0.009 Sum_probs=73.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAY 533 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 533 (784)
+......|.+.|++++|...|.+..+.. +-+...|..+...|...|++++|...|+...+.. +-+..+|..+..+|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc---hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHH
Confidence 3445566778888888888888888776 5677777778888888888888888888887764 33667888888888
Q ss_pred HHcCChHHHHHHHHHHHHc
Q 003946 534 IEANRPREVTALLRDARSA 552 (784)
Q Consensus 534 ~~~g~~~~A~~~~~~m~~~ 552 (784)
...|++++|...+++..+.
T Consensus 89 ~~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKV 107 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHc
Confidence 8888888888888888765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.76 E-value=0.0002 Score=64.83 Aligned_cols=98 Identities=13% Similarity=-0.015 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHH
Q 003946 521 ASSSVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEML 600 (784)
Q Consensus 521 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 600 (784)
|+...+......|.+.|++++|+..|++..+.. +.+...|+.+..+|.+.|++++|+..|++..+.. |.+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHHHH
Confidence 344444445555555555555555555554442 2244455555555555555555555555554432 4444444445
Q ss_pred HHHHHhcCcHHHHHHHHHHHH
Q 003946 601 VKGCAQNHEAGLMAKLLQEVK 621 (784)
Q Consensus 601 l~~~~~~~~~~~a~~~~~~~~ 621 (784)
..+|.+.|++++|...|+...
T Consensus 79 g~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555554444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.69 E-value=0.0003 Score=63.57 Aligned_cols=99 Identities=15% Similarity=-0.014 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003946 449 PTEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYAS 528 (784)
Q Consensus 449 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 528 (784)
|+...+......|.+.|++++|+..|.+..... +.+...|..+..+|.+.|++++|...|+...+.. +-+..+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~---p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHH
Confidence 444445555666667777777777777666655 4556666666666777777777777776666542 124566666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 003946 529 LLKAYIEANRPREVTALLRDARS 551 (784)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~m~~ 551 (784)
+..+|.+.|++++|...|++..+
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 66667777777777666666543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.00014 Score=59.53 Aligned_cols=92 Identities=10% Similarity=-0.060 Sum_probs=43.7
Q ss_pred HHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHH
Q 003946 564 LLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH---EAGLMAKLLQEVKEGQRIDCG-VHDWNNVIHF 639 (784)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p~-~~~y~~li~~ 639 (784)
+++.+...+++++|.+.|++....+ |++..++..+..++.+.+ ++++|..+|+.+...++ .|+ ..+|..+..+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~-~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC-CchHHHHHHHHHHH
Confidence 3444444455555555555544433 444444444444444322 22334444444443221 111 2245555556
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 003946 640 FCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 640 ~~~~g~~~~A~~~~~~m~~ 658 (784)
|.+.|++++|++.|++.++
T Consensus 82 y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 6666666666666666655
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.64 E-value=0.00026 Score=56.99 Aligned_cols=85 Identities=12% Similarity=0.067 Sum_probs=38.4
Q ss_pred HHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003946 568 KIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQ 647 (784)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 647 (784)
+.+.|++++|+..|++..... |.+..+|..+..++.+.|++++|...|+...+.++ .+...|..+...|...|+++
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhccccccccccc--ccccchHHHHHHHHHCCCHH
Confidence 334444444444444444433 33444444444444444444444444444444321 12344445555555555555
Q ss_pred HHHHHHHHH
Q 003946 648 DAEKALKRM 656 (784)
Q Consensus 648 ~A~~~~~~m 656 (784)
+|++.+++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.0003 Score=57.46 Aligned_cols=94 Identities=7% Similarity=0.052 Sum_probs=56.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 003946 456 KLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGW---LDQAHDLLDEMHLAGVRAS-SSVYASLLK 531 (784)
Q Consensus 456 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~-~~~~~~li~ 531 (784)
.+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++ +++|..+|+++.+.+..|+ ..++..|..
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~---p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 45566666666777777777666665 4555666666666655433 3446666666665432222 224555666
Q ss_pred HHHHcCChHHHHHHHHHHHHc
Q 003946 532 AYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 532 ~~~~~g~~~~A~~~~~~m~~~ 552 (784)
+|.+.|++++|...|++..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 666667777777666666654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.51 E-value=0.0007 Score=54.34 Aligned_cols=89 Identities=12% Similarity=-0.027 Sum_probs=66.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003946 457 LVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIEA 536 (784)
Q Consensus 457 li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 536 (784)
+...+.+.|++++|...|++..+.. +-+...|..+..++.+.|++++|...|+...+.. +.+..+|..+...|...
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc---cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 4456677788888888888877765 4466777777778888888888888888877764 33577777788888888
Q ss_pred CChHHHHHHHHHH
Q 003946 537 NRPREVTALLRDA 549 (784)
Q Consensus 537 g~~~~A~~~~~~m 549 (784)
|+.++|.+.+++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8888888777764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.47 E-value=0.037 Score=53.24 Aligned_cols=135 Identities=12% Similarity=0.020 Sum_probs=87.5
Q ss_pred ccchHHH--HHHHHhhCCCCccHHHHHHHHhhcCCCCChHHHHHHHHHHhhcCCCchhhHHHHHHhhhhhccCCcCcccc
Q 003946 164 EKEPLIY--LSLGLSKCGLPVPASTILRKLVATEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKK 241 (784)
Q Consensus 164 ~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~~~ 241 (784)
+++.++. ....|-+.|.++.|..++..+.. |..++..|.+. +++..|.+++. +.
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l--------~~~~~avd~~~--k~----- 66 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHL--------GEYQAAVDGAR--KA----- 66 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTT--------TCHHHHHHHHH--HH-----
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhh--------ccHHHHHHHHH--Hc-----
Confidence 4455544 56667799999999999998764 56666666665 66777777766 32
Q ss_pred ccccccCCCCchhhHHHHHHHhhhcCChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 003946 242 CNAPLIAMKPNTNTFNIALAGCLLFETTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLS 321 (784)
Q Consensus 242 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~ 321 (784)
-+..+|..+...|.+......|. +.......+......++..|-..|.+++...+++.........
T Consensus 67 ---------~~~~~~k~~~~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~ 132 (336)
T d1b89a_ 67 ---------NSTRTWKEVCFACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH 132 (336)
T ss_dssp ---------TCHHHHHHHHHHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred ---------CCHHHHHHHHHHHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccc
Confidence 24558889999998887765542 2233334566666789999999999999999999876543343
Q ss_pred hhhHHHHHHHHHHHHHhcC
Q 003946 322 DIQFRQFYNCLLSCHLKFG 340 (784)
Q Consensus 322 ~~~~~~~~~~li~~~~~~g 340 (784)
.. +++.++..|++.+
T Consensus 133 ~~----~~~~L~~lyak~~ 147 (336)
T d1b89a_ 133 MG----MFTELAILYSKFK 147 (336)
T ss_dssp HH----HHHHHHHHHHTTC
T ss_pred hH----HHHHHHHHHHHhC
Confidence 33 5899999999865
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.0015 Score=53.72 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=43.7
Q ss_pred HHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHH
Q 003946 567 SKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCG-----VHDWNNVIHFFC 641 (784)
Q Consensus 567 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~y~~li~~~~ 641 (784)
.+...|++++|+..|.+..+.+ |.+...+..+..+|.+.|+++.|.+.++.+.+..+-.+. ..+|..+...+.
T Consensus 13 ~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~ 90 (128)
T d1elra_ 13 DAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444432 344444444444444444444444444443332111111 134556666666
Q ss_pred hcCCHHHHHHHHHHHHh
Q 003946 642 KKRLMQDAEKALKRMRS 658 (784)
Q Consensus 642 ~~g~~~~A~~~~~~m~~ 658 (784)
..+++++|++.|++...
T Consensus 91 ~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 91 KEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 77777777777766654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.0043 Score=53.90 Aligned_cols=73 Identities=8% Similarity=-0.055 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEML 600 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 600 (784)
+|+.+..+|.+.|++++|+..++...+.. +.++..|..+..+|...|++++|+..|++..+.. |.+......+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l 136 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQL 136 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 45556666666666666666666666553 2255566666666666666666666666666544 4444443333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.36 E-value=0.059 Score=50.19 Aligned_cols=222 Identities=10% Similarity=-0.004 Sum_probs=156.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCIS----LGWLDQAHDLLDEMHLAGVRASSSV 525 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~ 525 (784)
|+..+..|-..+-+.+++++|++.|++..+.| +...+..|-..|.. ..+...|...+....+.+ +...
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a 72 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 72 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccch
Confidence 44567777778888999999999999998877 34445556666665 568999999999988876 4555
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHhHhcCCCCCcHHHH
Q 003946 526 YASLLKAYIE----ANRPREVTALLRDARSAGIQLDASCYEALLQSKIV----QKDTPGALHLFKEMKESKIPRSGHQEF 597 (784)
Q Consensus 526 ~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 597 (784)
...+...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+......+ +...+
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~ 145 (265)
T d1ouva_ 73 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGC 145 (265)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred hhccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc----ccchh
Confidence 5566555544 4678889999998887653 2222333333332 345667777777766643 35677
Q ss_pred HHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003946 598 EMLVKGCAQ----NHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCK----KRLMQDAEKALKRMRSLGHLPNAQTFH 669 (784)
Q Consensus 598 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 669 (784)
..+...+.. ..+...+...++...+.+ +......+-..|.. ..+.++|...|++..+.| ++..+.
T Consensus 146 ~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g----~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~ 218 (265)
T d1ouva_ 146 TILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF 218 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred hhhhhhhccCCCcccccccchhhhhcccccc----ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHH
Confidence 777777775 446778888888877654 55666666666665 568999999999999887 455666
Q ss_pred HHHHHHHH----cCCCHHHHHHHHHHHHh
Q 003946 670 SMVTGYAA----IGGKYTEVTELWGEMKS 694 (784)
Q Consensus 670 ~ll~a~~~----~g~~~~~a~~~~~~m~~ 694 (784)
.|...|.. .. +.++|.+.|++..+
T Consensus 219 ~LG~~y~~G~g~~~-n~~~A~~~~~kAa~ 246 (265)
T d1ouva_ 219 NLGAMQYNGEGVTR-NEKQAIENFKKGCK 246 (265)
T ss_dssp HHHHHHHTTSSSSC-CSTTHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcc-CHHHHHHHHHHHHH
Confidence 66666654 23 67888888888765
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=0.0029 Score=55.02 Aligned_cols=63 Identities=10% Similarity=-0.016 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 003946 560 CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQ 624 (784)
Q Consensus 560 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 624 (784)
+|+.+..+|.+.|++++|+..++...+.. |.+..++..+..+|...|++++|...|+...+.+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc--ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 45555566666666666666666666654 5555566666666666666666666666665543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.11 E-value=0.01 Score=50.24 Aligned_cols=70 Identities=7% Similarity=-0.076 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHH
Q 003946 524 SVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQE 596 (784)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 596 (784)
.+|+.+..+|.+.|++++|+..+++..+.. +.+..+|..+..++...|++++|+..|++..+.. |.+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~n~~~ 137 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDI 137 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 355556666666677777777666665553 2355666666666666666666666666666544 444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.0059 Score=50.01 Aligned_cols=96 Identities=9% Similarity=0.134 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC-----HHHHH
Q 003946 454 YIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR-AS-----SSVYA 527 (784)
Q Consensus 454 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~-----~~~~~ 527 (784)
+-.+-..+.+.|++++|+..|.+....+ +.+...+..+..+|.+.|++++|...++.+++.... +. ..+|.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4456667778888888888888888776 566777888888888888888888888887653210 11 24566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Q 003946 528 SLLKAYIEANRPREVTALLRDARSA 552 (784)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~m~~~ 552 (784)
.+...+...+++++|...|++....
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 6777777777888888888776543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.04 E-value=0.018 Score=50.06 Aligned_cols=71 Identities=11% Similarity=0.058 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMH-----LAGVRASSSV 525 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~~ 525 (784)
..+..+...+.+.|++++|+..++++.... +-+...|..++.+|.+.|+..+|.+.|+++. +.|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~---P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 456678888888888888888888888876 6788888888888888888888888888764 3577777654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.97 E-value=0.0065 Score=53.07 Aligned_cols=72 Identities=8% Similarity=-0.022 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCCCCH
Q 003946 666 QTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVAMME-----EGKMFIDK 740 (784)
Q Consensus 666 ~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~pd~ 740 (784)
..+..+..++...| ++++|...++++.+.. +-+...|..++.+|.+.|+.++|.+.|+++. +.|+.|..
T Consensus 68 ~a~~~la~~~~~~g-~~~~Al~~~~~al~~~-----P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 68 LAHTAKAEAEIACG-RASAVIAELEALTFEH-----PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHHCC-CchHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 45677888889999 9999999999988732 2377889999999999999999999998874 46999987
Q ss_pred HHH
Q 003946 741 YKY 743 (784)
Q Consensus 741 ~~~ 743 (784)
.+-
T Consensus 142 ~l~ 144 (179)
T d2ff4a2 142 TLR 144 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.97 E-value=0.007 Score=52.41 Aligned_cols=63 Identities=13% Similarity=-0.033 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 524 SVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
..|..+..+|.+.|++++|+..+++..+.. +.+...|..+-.+|...|++++|+..|++..+.
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344445555555556666665555555443 224445555555555555555555555555553
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.93 E-value=0.017 Score=48.90 Aligned_cols=61 Identities=13% Similarity=0.017 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003946 560 CYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 560 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 622 (784)
+|+.+..+|.+.|++++|++.+++..+.. |.+..+|..+..++...|++++|...|+...+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~--p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc--chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555556666665555555543 44444555555555555555555555555444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.00093 Score=70.01 Aligned_cols=111 Identities=9% Similarity=-0.083 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHH
Q 003946 524 SVYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKG 603 (784)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~ 603 (784)
..+..+...+.+.|+.++|...+....... ...++..+-..+...|++++|+..|++..+.. |.+...|+.+...
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQPYNQLAIL 195 (497)
T ss_dssp ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCchHHHHHHHHH
Confidence 334444444445555555544444333210 01234444444555555555555555555443 4445555555555
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 003946 604 CAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFC 641 (784)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~ 641 (784)
+...|+..+|...|.+.....+ |-..+++.|...|.
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~~--~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVKF--PFPAASTNLQKALS 231 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSSB--CCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHH
Confidence 5555555555555555444321 33444555544443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.85 E-value=0.01 Score=51.37 Aligned_cols=61 Identities=8% Similarity=-0.134 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003946 596 EFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRS 658 (784)
Q Consensus 596 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 658 (784)
.|..+..++.+.|++++|+..++...+.++ .+...|..+..+|...|++++|++.|++.++
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p--~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDP--SNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhh--hhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444444444444444444444444322 1334455555555555555555555555554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.83 E-value=0.024 Score=48.77 Aligned_cols=31 Identities=16% Similarity=-0.065 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003946 450 TEKIYIKLVKAFLEAGKTKELTHFLIKAEKE 480 (784)
Q Consensus 450 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 480 (784)
+..+|..+..++...|++++|...|.+....
T Consensus 97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344444445555555555555555555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.80 E-value=0.017 Score=49.82 Aligned_cols=73 Identities=8% Similarity=0.068 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcCCCCCcHHHHHHH
Q 003946 525 VYASLLKAYIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESKIPRSGHQEFEML 600 (784)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 600 (784)
+|+.+..+|.+.|++++|+..++...+.. +.+...|..+..++...|++++|+..|++..+.. |++......+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~--P~n~~~~~~l 138 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQI 138 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 34445555666666666666666665543 2345555566666666666666666666655543 4444443333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.00099 Score=69.79 Aligned_cols=168 Identities=7% Similarity=-0.102 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 003946 504 LDQAHDLLDEMHLAGVRASSSVYASLLKA--YIEANRPREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLF 581 (784)
Q Consensus 504 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 581 (784)
+..+.+.++...+..-.++..-....+.. +...+.++.|+..+....+.. .++...+..+-..+.+.|+.++|...+
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 143 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQ 143 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence 34455566655544333332222221111 122344455544444333221 234556677777777888888888877
Q ss_pred HHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003946 582 KEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDAEKALKRMRSLGH 661 (784)
Q Consensus 582 ~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 661 (784)
+..... +...++..+...+...+++++|...|++..+..+- +...|+.|...|...|+..+|...|.+.+...
T Consensus 144 ~~al~~----~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~--~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~- 216 (497)
T d1ya0a1 144 SSSCSY----ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS--NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK- 216 (497)
T ss_dssp CHHHHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-
T ss_pred HHHhCC----CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence 765542 22457778888888899999999999988886532 45678999999999999999999998888763
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 003946 662 LPNAQTFHSMVTGYAAIG 679 (784)
Q Consensus 662 ~p~~~~~~~ll~a~~~~g 679 (784)
.|-..++..|...+.+..
T Consensus 217 ~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 217 FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp BCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 567778888877776655
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.50 E-value=0.01 Score=49.67 Aligned_cols=33 Identities=9% Similarity=-0.013 Sum_probs=19.0
Q ss_pred hhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcC
Q 003946 574 TPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNH 608 (784)
Q Consensus 574 ~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 608 (784)
+++|+..|++..+.. |.+..+|..+..+|...|
T Consensus 57 ~~~Ai~~~~kAl~l~--P~~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 57 IQEAITKFEEALLID--PKKDEAVWCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--chhhHHHhhHHHHHHHcc
Confidence 455666666666543 555666666666555443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.40 E-value=0.015 Score=48.57 Aligned_cols=116 Identities=17% Similarity=0.093 Sum_probs=72.7
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003946 461 FLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISL----------GWLDQAHDLLDEMHLAGVRASSSVYASLL 530 (784)
Q Consensus 461 ~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li 530 (784)
|-+.+.+++|...|+...+.. |.+..++..+..++... +.+++|...|+...+.. +.+..+|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~---P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC---CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHH
Confidence 445667889999999988876 66777777777777643 34567888888777764 23567777777
Q ss_pred HHHHHcCC-----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhcC
Q 003946 531 KAYIEANR-----------PREVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKESK 588 (784)
Q Consensus 531 ~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 588 (784)
.+|...|+ +++|.+.|++..+. .|+...|..-+..+ .+|.+++.+..+.|
T Consensus 83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 77766543 45566666665544 45544444333332 34455555544443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.29 E-value=0.0035 Score=58.79 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=27.9
Q ss_pred cCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 003946 571 QKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 571 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 622 (784)
.|++++|+..+++..+.. |.+...+..+...++..|++++|.+.|+...+
T Consensus 9 ~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455555555555555544 55555555555555555555555555555554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.26 E-value=0.0034 Score=58.91 Aligned_cols=121 Identities=17% Similarity=0.109 Sum_probs=67.4
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChH
Q 003946 462 LEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRAS-SSVYASLLKAYIEANRPR 540 (784)
Q Consensus 462 ~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~ 540 (784)
.+.|++++|+..+++..+.. +-|...+..+...++..|++++|...|+...+.. |+ ...+..+...+...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~~~---P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccH
Confidence 35677888888888877776 6677777778888888888888888888777653 32 334443433333222222
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHhc
Q 003946 541 EVTALLRDARSAGIQLDASCYEALLQSKIVQKDTPGALHLFKEMKES 587 (784)
Q Consensus 541 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (784)
++..-...-...+-.++...+......+...|+.++|.+.++++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22111110000011112233334444555667777777777666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.24 E-value=0.059 Score=45.42 Aligned_cols=66 Identities=8% Similarity=0.052 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 003946 630 VHDWNNVIHFFCKKRLMQDAEKALKRMRSL-----GHLPN-----AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFA 696 (784)
Q Consensus 630 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-----~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~ 696 (784)
...|+.+..+|...|++++|.+.+++.++. ...++ ...|..+..+|...| ++++|...|++..+..
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg-~~eeA~~~~~~Al~l~ 130 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLG-RGAEAMPEFKKVVEMI 130 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 356788888888888888888888877642 12222 224556677788888 8888888888876643
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.83 E-value=0.1 Score=43.92 Aligned_cols=98 Identities=16% Similarity=0.040 Sum_probs=56.8
Q ss_pred HHHHHH--HHHHHHcCChHHHHHHHHHHHHcCCCCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 003946 452 KIYIKL--VKAFLEAGKTKELTHFLIKAEKENLQVSHD----------DAALGHVITLCISLGWLDQAHDLLDEMHLA-- 517 (784)
Q Consensus 452 ~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~~~~~~p~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 517 (784)
.+|..+ ...+.+.|++++|+..|.+...... -.|+ ...|+.+..+|.+.|++++|...+++..+.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~-~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISH-TMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCh-hhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 345555 4456677888888888888765331 1222 345666677777777777777766665532
Q ss_pred ---CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003946 518 ---GVRAS-----SSVYASLLKAYIEANRPREVTALLRDAR 550 (784)
Q Consensus 518 ---g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 550 (784)
...++ ...++.+..+|...|++++|...|++..
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1234445555666666666666665543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.32 E-value=0.44 Score=36.93 Aligned_cols=139 Identities=12% Similarity=0.096 Sum_probs=84.7
Q ss_pred HcCChhHHHHHHHHhHhcCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003946 570 VQKDTPGALHLFKEMKESKIPRSGHQEFEMLVKGCAQNHEAGLMAKLLQEVKEGQRIDCGVHDWNNVIHFFCKKRLMQDA 649 (784)
Q Consensus 570 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A 649 (784)
-.|.+++..++..+.... .+..-|+-++--....-+.+...+.++.+-.-..+. .++++...
T Consensus 14 ldG~ve~Gveii~k~~~s----s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~v 75 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 75 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HhhhHHhHHHHHHHHccc----CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHHH
Confidence 346666677766666552 234455555555555556666666666666544322 23333333
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003946 650 EKALKRMRSLGHLPNAQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASSTSMNFDEELLDSVLYTFVRGGFFARANEVVA 729 (784)
Q Consensus 650 ~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 729 (784)
...+-.+- .+..-+...++.....| +-|.-.++...+.+ +-+|++...-.+..+|.+-|...++-+++.
T Consensus 76 v~C~~~~n-----~~se~vdlALd~lv~~~-kkd~Ld~i~~~l~k-----n~~i~~~~llkia~A~kkig~~re~nell~ 144 (161)
T d1wy6a1 76 VECGVINN-----TLNEHVNKALDILVIQG-KRDKLEEIGREILK-----NNEVSASILVAIANALRRVGDERDATTLLI 144 (161)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTT-CHHHHHHHHHHHC-------CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhc-cHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 33332221 23344556677777777 77777777777654 355677777788888888888888888888
Q ss_pred HHHhCCCC
Q 003946 730 MMEEGKMF 737 (784)
Q Consensus 730 ~m~~~g~~ 737 (784)
+..++|++
T Consensus 145 ~ACe~G~K 152 (161)
T d1wy6a1 145 EACKKGEK 152 (161)
T ss_dssp HHHHTTCH
T ss_pred HHHHHhHH
Confidence 88887764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.60 E-value=0.067 Score=40.53 Aligned_cols=64 Identities=9% Similarity=-0.054 Sum_probs=36.7
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003946 599 MLVKGCAQNHEAGLMAKLLQEVKEGQR----IDCG-VHDWNNVIHFFCKKRLMQDAEKALKRMRSLGHLPN 664 (784)
Q Consensus 599 ~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 664 (784)
.+...+.+.|+++.|...|++..+..+ ..++ ..+++.|..+|.+.|++++|++.+++.++ +.|+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~ 78 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPE 78 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcC
Confidence 444555555555555555554433211 1112 34567777777777777777777777776 3454
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.54 E-value=0.13 Score=38.86 Aligned_cols=73 Identities=12% Similarity=0.019 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 003946 665 AQTFHSMVTGYAAIGGKYTEVTELWGEMKSFASST-SMNFD-EELLDSVLYTFVRGGFFARANEVVAMMEEGKMFIDK 740 (784)
Q Consensus 665 ~~~~~~ll~a~~~~g~~~~~a~~~~~~m~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 740 (784)
...+-.+...+.+.| ++++|...+++..+..+.. ...++ ..+++.|..+|.+.|++++|.+.+++..+. .|+.
T Consensus 5 addc~~lG~~~~~~g-~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--~P~~ 79 (95)
T d1tjca_ 5 AEDSFELGKVAYTEA-DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (95)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--CcCC
Confidence 334446677888888 9999999998877644322 12233 567888999999999999999999999874 5664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.35 E-value=0.83 Score=35.38 Aligned_cols=66 Identities=20% Similarity=0.127 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003946 452 KIYIKLVKAFLEAGKTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVR 520 (784)
Q Consensus 452 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 520 (784)
...+..++.+.++|.-++..++++.+.+.+ .|.+.....+..||.+.|+..++.+++.+..+.|++
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~---~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN---EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 455667778888888888888888877766 677777778888899999999998888888888864
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.93 E-value=2.3 Score=33.70 Aligned_cols=110 Identities=15% Similarity=0.039 Sum_probs=61.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChHH
Q 003946 466 KTKELTHFLIKAEKENLQVSHDDAALGHVITLCISLGWLDQAHDLLDEMHLAGVRASSSVYASLLKAYIE----ANRPRE 541 (784)
Q Consensus 466 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~ 541 (784)
++++|.+.|.+..+.| .+... ..+. .....+.++|.+.++...+.| +......|-..|.. ..+.++
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~--~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGC--LSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHH--HHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhh--hhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHH
Confidence 5677778887777666 33332 1222 223456777777777777665 45555555555544 344667
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHhHhcC
Q 003946 542 VTALLRDARSAGIQLDASCYEALLQSKIV----QKDTPGALHLFKEMKESK 588 (784)
Q Consensus 542 A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 588 (784)
|.++|++..+.| +......|-..|.. ..+.++|.+.|+...+.|
T Consensus 78 A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 78 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 777777766654 23333333333333 235666666666665555
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| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.53 E-value=2.3 Score=33.71 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHhCC
Q 003946 645 LMQDAEKALKRMRSLG 660 (784)
Q Consensus 645 ~~~~A~~~~~~m~~~g 660 (784)
+.++|.++|++..+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4555555555555444
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| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.06 E-value=5.5 Score=29.08 Aligned_cols=63 Identities=3% Similarity=0.083 Sum_probs=50.7
Q ss_pred ChhHHHHHHHhhhhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 003946 268 TTRKAEQLLDIMPRIGVKADSNLLIIMAHIYERNGRREELRKLQRHIDEAVNLSDIQFRQFYNCLLS 334 (784)
Q Consensus 268 ~~~~A~~l~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~li~ 334 (784)
|.-+..+-++.+....+.|++.+..+.+.+|-|.+++..|.++|+.++.+...... .|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~----~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKE----IYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTT----HHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHH----HHHHHHH
Confidence 44567777788888889999999999999999999999999999999887544433 3655543
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| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.49 E-value=1.9 Score=33.62 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=53.5
Q ss_pred CCchhHHHHHHHHHhccChhhHHHHHHHHHHHHHhcccccCccchHHHHHHHHhhCCCCccHHHHHHHHhhcCCCCChH
Q 003946 123 PRKTLVNKILTSFVESLDSKWLEKAYGLVEQAFEEGKQILLEKEPLIYLSLGLSKCGLPVPASTILRKLVATEQYPPVT 201 (784)
Q Consensus 123 p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 201 (784)
|+..+--..--+++++.+....++++.+++.+... .+. ...+.+-+|..+|.+.|+++.|++.++.+++. .|+-.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-~p~-~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGG-GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-Cch-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcH
Confidence 44434334445566667888999999999999876 111 12245566888999999999999999999985 45543
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| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.62 E-value=9.6 Score=29.38 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=9.9
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHh
Q 003946 599 MLVKGCAQNHEAGLMAKLLQEVKE 622 (784)
Q Consensus 599 ~ll~~~~~~~~~~~a~~~~~~~~~ 622 (784)
.|.-+|.+.|+++.|.+.++.+.+
T Consensus 78 ~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 78 YLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHc
Confidence 333334444444444444444443
|