Citrus Sinensis ID: 003954
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 784 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WV12 | 802 | Homeobox-leucine zipper p | yes | no | 0.896 | 0.876 | 0.652 | 0.0 | |
| Q9M2E8 | 808 | Homeobox-leucine zipper p | no | no | 0.911 | 0.884 | 0.591 | 0.0 | |
| Q6EPF0 | 804 | Homeobox-leucine zipper p | yes | no | 0.892 | 0.870 | 0.581 | 0.0 | |
| Q7Y0V9 | 813 | Homeobox-leucine zipper p | no | no | 0.886 | 0.854 | 0.549 | 0.0 | |
| Q7Y0V7 | 872 | Homeobox-leucine zipper p | no | no | 0.905 | 0.814 | 0.552 | 0.0 | |
| Q93V99 | 743 | Homeobox-leucine zipper p | no | no | 0.894 | 0.943 | 0.540 | 0.0 | |
| Q9LTK3 | 682 | Homeobox-leucine zipper p | no | no | 0.839 | 0.964 | 0.535 | 0.0 | |
| Q6ZAR0 | 784 | Homeobox-leucine zipper p | no | no | 0.918 | 0.918 | 0.519 | 0.0 | |
| Q8RWU4 | 762 | Homeobox-leucine zipper p | no | no | 0.891 | 0.917 | 0.520 | 0.0 | |
| Q0J9X2 | 784 | Homeobox-leucine zipper p | no | no | 0.878 | 0.878 | 0.519 | 0.0 |
| >sp|Q0WV12|ANL2_ARATH Homeobox-leucine zipper protein ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 931 bits (2406), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/731 (65%), Positives = 554/731 (75%), Gaps = 28/731 (3%)
Query: 53 EQFDPSVVGRIREEEFESRSGSDNVEGASGDDQEANEDGPPRKKKYHRHTPHQIQELESF 112
+ FD SV R REEE ESRSGSDNVEG SG+DQ+A D PPRKK+YHRHTP QIQELES
Sbjct: 94 DTFDGSVNRRSREEEHESRSGSDNVEGISGEDQDA-ADKPPRKKRYHRHTPQQIQELESM 152
Query: 113 FKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHENIILRQEHDKLRAEN 172
FKECPHPDEKQR ELS+RL LE++Q+KFWFQNRRTQMKTQ+ERHEN +LRQE+DKLRAEN
Sbjct: 153 FKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENALLRQENDKLRAEN 212
Query: 173 EMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICILANKFLGRPLTS 232
+++AM+NP C NCGGPA+ G VS E LRIENARLKDEL R+C L KFLG
Sbjct: 213 MSIREAMRNPICTNCGGPAMLGDVS-LEEHHLRIENARLKDELDRVCNLTGKFLGHHHNH 271
Query: 233 SAGPISPQGVNSSLELGVGRNGFGGVANIPGSMMQTSLEFVEGPVMSLTMP--HDRNMLI 290
NSSLEL VG N GG P S + +++L+
Sbjct: 272 H--------YNSSLELAVGTNNNGGHFAFPPDFGGGGGCLPPQQQQSTVINGIDQKSVLL 323
Query: 291 DLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRET 350
+LALTAMDEL+K+A+++ PLW+KSLDG RD NQ+EYMRTFS KP G TEASR +
Sbjct: 324 ELALTAMDELVKLAQSEEPLWVKSLDGERDELNQDEYMRTFS---STKPTGLATEASRTS 380
Query: 351 GMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVL 410
GMVIINS AL+ET+MD+NRW EMFPC +AR+ TTDV+ S + GT NGALQ+M AE QVL
Sbjct: 381 GMVIINSLALVETLMDSNRWTEMFPCNVARATTTDVI-SGGMAGTINGALQLMNAELQVL 439
Query: 411 SPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNN 470
SPLVPVR FLRFCKQH EGVWAVVDVSID RE P RRLPSG VVQDV N
Sbjct: 440 SPLVPVRNVNFLRFCKQHAEGVWAVVDVSIDPVRENSGGAP--VIRRLPSGCVVQDVSNG 497
Query: 471 YSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCECLAVLMSSTITVQDQ 530
YSKVTW+EHAEYDE+ +H L RPLL SG+GFG+ +W+ATLQRQCECLA+L+SS++T D
Sbjct: 498 YSKVTWVEHAEYDENQIHQLYRPLLRSGLGFGSQRWLATLQRQCECLAILISSSVTSHDN 557
Query: 531 SGISPIGRKSMLKLAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEP 590
+ I+P GRKSMLKLAQRMT+NFCSG+ A SV W KL VGNV DVRV+TRK+V+DPGEP
Sbjct: 558 TSITPGGRKSMLKLAQRMTFNFCSGISAPSVHNWSKLTVGNVDPDVRVMTRKSVDDPGEP 617
Query: 591 PGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSNGGPLQEMVHIAKGQAPGNCASL 650
PG+VL AAT+VWLP QRL+DF+R+ERMR EWDILSNGGP+QEM HI KGQ G SL
Sbjct: 618 PGIVLSAATSVWLPAAPQRLYDFLRNERMRCEWDILSNGGPMQEMAHITKGQDQG--VSL 675
Query: 651 LRAGAMNVNDSGMLILQETWNDSSGSLVVYAPVDVPSMSMVMNGGDSTCVALLPSGFAIL 710
LR+ AMN N S MLILQET D+SG+LVVYAPVD+P+M +VMNGGDS+ VALLPSGFA+L
Sbjct: 676 LRSNAMNANQSSMLILQETCIDASGALVVYAPVDIPAMHVVMNGGDSSYVALLPSGFAVL 735
Query: 711 PDGYFGHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVESVETVNNLI 770
PDG GG + + V GG LLTV FQILVN+LPTAKLTVESVETVNNLI
Sbjct: 736 PDGGIDGGGSGDGDQRPV--------GGGSLLTVAFQILVNNLPTAKLTVESVETVNNLI 787
Query: 771 SCTIQKIKAAV 781
SCT+QKI+AA+
Sbjct: 788 SCTVQKIRAAL 798
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Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M2E8|HDG1_ARATH Homeobox-leucine zipper protein HDG1 OS=Arabidopsis thaliana GN=HDG1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6EPF0|ROC5_ORYSJ Homeobox-leucine zipper protein ROC5 OS=Oryza sativa subsp. japonica GN=ROC5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7Y0V9|ROC4_ORYSJ Homeobox-leucine zipper protein ROC4 OS=Oryza sativa subsp. japonica GN=ROC4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q7Y0V7|ROC6_ORYSJ Homeobox-leucine zipper protein ROC6 OS=Oryza sativa subsp. japonica GN=ROC6 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q93V99|PDF2_ARATH Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LTK3|HDG7_ARATH Homeobox-leucine zipper protein HDG7 OS=Arabidopsis thaliana GN=HDG7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6ZAR0|ROC1_ORYSJ Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica GN=ROC1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8RWU4|ATML1_ARATH Homeobox-leucine zipper protein MERISTEM L1 OS=Arabidopsis thaliana GN=ATML1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q0J9X2|ROC2_ORYSJ Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp. japonica GN=ROC2 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 784 | ||||||
| 255539515 | 799 | homeobox protein, putative [Ricinus comm | 0.947 | 0.929 | 0.706 | 0.0 | |
| 359489358 | 811 | PREDICTED: homeobox-leucine zipper prote | 0.984 | 0.951 | 0.661 | 0.0 | |
| 296089063 | 771 | unnamed protein product [Vitis vinifera] | 0.951 | 0.967 | 0.662 | 0.0 | |
| 147811086 | 784 | hypothetical protein VITISV_023503 [Viti | 0.952 | 0.952 | 0.667 | 0.0 | |
| 224130112 | 823 | predicted protein [Populus trichocarpa] | 0.991 | 0.944 | 0.641 | 0.0 | |
| 449454480 | 841 | PREDICTED: homeobox-leucine zipper prote | 0.946 | 0.882 | 0.684 | 0.0 | |
| 356535894 | 751 | PREDICTED: homeobox-leucine zipper prote | 0.928 | 0.969 | 0.682 | 0.0 | |
| 356532068 | 820 | PREDICTED: homeobox-leucine zipper prote | 0.977 | 0.934 | 0.631 | 0.0 | |
| 350539483 | 821 | cutin deficient 2 [Solanum lycopersicum] | 0.985 | 0.941 | 0.633 | 0.0 | |
| 356568318 | 822 | PREDICTED: homeobox-leucine zipper prote | 0.975 | 0.930 | 0.630 | 0.0 |
| >gi|255539515|ref|XP_002510822.1| homeobox protein, putative [Ricinus communis] gi|223549937|gb|EEF51424.1| homeobox protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1094 bits (2830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/762 (70%), Positives = 625/762 (82%), Gaps = 19/762 (2%)
Query: 35 LSLSIK-NAMD-AGEMGLIGEQFDPSVVGRIREEEFESRSGSDNVEGASGDDQEANEDGP 92
LSLSIK MD G+MGL+GE FDPS+VGR++E+ +ESRSGSDN+EGASGDDQEA ED
Sbjct: 39 LSLSIKGKKMDNHGDMGLLGEHFDPSLVGRLKEDGYESRSGSDNLEGASGDDQEAGEDQR 98
Query: 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
PRKKKYHRHTP QIQELE FKECPHPDEKQR ELSRRLGLESKQIKFWFQNRRTQMKTQ
Sbjct: 99 PRKKKYHRHTPLQIQELEVCFKECPHPDEKQRLELSRRLGLESKQIKFWFQNRRTQMKTQ 158
Query: 153 MERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLK 212
+ERHENIILRQE+DKLRAENE+L M +P CN CGGP VPG VS ++ QQLRIENARLK
Sbjct: 159 LERHENIILRQENDKLRAENELLSQNMTDPMCNGCGGPVVPGPVS-FDQQQLRIENARLK 217
Query: 213 DELGRICILANKFLGRPLTSSAGPISPQGVNSSLELGVGRNGFGGVANIPGSMMQTSLEF 272
DELGR+C LANKFLGRPL+SSA PI P G NS LEL VGRNG+G + N+ S Q L++
Sbjct: 218 DELGRVCALANKFLGRPLSSSANPIPPFGSNSKLELAVGRNGYGDLGNVE-STFQMGLDY 276
Query: 273 -----------VEGPVMSLTMPHDRNMLIDLALTAMDELIKMAEADSPLWIKSLDGGRDV 321
+ GP++S +P+DR+M+IDLA+ AMDEL+K+A+ D+PLWIKSLDGG+D
Sbjct: 277 NDAITMPLMKQLTGPMVS-EVPYDRSMMIDLAVAAMDELVKIAQIDNPLWIKSLDGGKDT 335
Query: 322 FNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMDANRWAEMFPCMIARS 381
N EEYMRTFSPCIGMKPN F+ EA+R+TG+VIIN AL+E +MD NRW E FP +IAR+
Sbjct: 336 LNYEEYMRTFSPCIGMKPNSFIPEATRDTGIVIINILALVEILMDVNRWLEAFPSLIARA 395
Query: 382 ATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSID 441
+T DV+ S + GTKNGALQVM AEFQV+SPLVPVRQ +FLRFCKQH EGVW VVDVSID
Sbjct: 396 STIDVI-SSGMAGTKNGALQVMNAEFQVVSPLVPVRQVRFLRFCKQHSEGVWVVVDVSID 454
Query: 442 TNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGF 501
N E +A PF RRLPSG ++Q++PN SKVTW+EH+EYDES VH L R +LSSG GF
Sbjct: 455 ANLESSNAHPFAACRRLPSGCILQEMPNGCSKVTWVEHSEYDESAVHQLYRSILSSGKGF 514
Query: 502 GAPKWVATLQRQCECLAVLMSSTITVQDQSGISPIGRKSMLKLAQRMTYNFCSGVCASSV 561
GA +WVATLQR CEC+ +LMS TI+ +DQ+ +S G+KSMLKLAQRM NFCSGVCASS+
Sbjct: 515 GAQRWVATLQRYCECMTILMSPTISGEDQTVMSLSGKKSMLKLAQRMVDNFCSGVCASSL 574
Query: 562 RKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRS 621
RKWDKL VGN+GEDVR+LTRKN+NDPGEPPG+VL AAT+VWLP+ RQRLFDF+RDER R
Sbjct: 575 RKWDKLLVGNIGEDVRILTRKNINDPGEPPGIVLSAATSVWLPVMRQRLFDFLRDERSRC 634
Query: 622 EWDILSNGGPLQEMVHIAKGQAPGNCASLLRAGAM--NVNDSGMLILQETWNDSSGSLVV 679
EWDILS+GG LQEMVHI+K + NC SLLR+ A+ N NDS MLILQETW+D + SLVV
Sbjct: 635 EWDILSHGGMLQEMVHISKSHSRANCVSLLRSTAVSPNANDSSMLILQETWHDVASSLVV 694
Query: 680 YAPVDVPSMSMVMNGGDSTCVALLPSGFAILPDGYFGHGGLINSNGTMVKTEGSSNESGG 739
YAPVD+PSMS+VMNGGDST VALLPSGF ILPD GG NGT+VK + + GG
Sbjct: 695 YAPVDIPSMSVVMNGGDSTYVALLPSGFVILPDDSSSQGGSNFCNGTLVKRDSDGGDGGG 754
Query: 740 CLLTVGFQILVNSLPTAKLTVESVETVNNLISCTIQKIKAAV 781
C+LTVGFQILVN+LPTAKLTVESVETVNNLISCTIQ+IKAA+
Sbjct: 755 CILTVGFQILVNNLPTAKLTVESVETVNNLISCTIQRIKAAL 796
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489358|ref|XP_002272264.2| PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|296089063|emb|CBI38766.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147811086|emb|CAN61351.1| hypothetical protein VITISV_023503 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224130112|ref|XP_002320755.1| predicted protein [Populus trichocarpa] gi|222861528|gb|EEE99070.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449454480|ref|XP_004144982.1| PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Cucumis sativus] gi|449473159|ref|XP_004153804.1| PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Cucumis sativus] gi|449522284|ref|XP_004168157.1| PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356535894|ref|XP_003536477.1| PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356532068|ref|XP_003534596.1| PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|350539483|ref|NP_001234657.1| cutin deficient 2 [Solanum lycopersicum] gi|255529749|gb|ACU12849.1| cutin deficient 2 [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
| >gi|356568318|ref|XP_003552359.1| PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 784 | ||||||
| TAIR|locus:2127008 | 802 | ANL2 "ANTHOCYANINLESS 2" [Arab | 0.897 | 0.877 | 0.654 | 1.1e-245 | |
| TAIR|locus:2098866 | 808 | HDG1 "AT3G61150" [Arabidopsis | 0.945 | 0.917 | 0.592 | 1.4e-229 | |
| TAIR|locus:2135368 | 743 | PDF2 "AT4G04890" [Arabidopsis | 0.905 | 0.955 | 0.539 | 3.5e-201 | |
| TAIR|locus:2119048 | 762 | ATML1 "AT4G21750" [Arabidopsis | 0.910 | 0.937 | 0.525 | 3.5e-194 | |
| TAIR|locus:2145116 | 682 | HDG7 "AT5G52170" [Arabidopsis | 0.536 | 0.617 | 0.586 | 4.8e-194 | |
| TAIR|locus:2206880 | 722 | HDG11 "AT1G73360" [Arabidopsis | 0.880 | 0.955 | 0.446 | 5.8e-153 | |
| TAIR|locus:2030913 | 687 | HDG12 "homeodomain GLABROUS 12 | 0.808 | 0.922 | 0.429 | 2.5e-149 | |
| TAIR|locus:2207235 | 721 | HDG2 "AT1G05230" [Arabidopsis | 0.748 | 0.814 | 0.460 | 5e-131 | |
| TAIR|locus:2131814 | 686 | FWA "AT4G25530" [Arabidopsis t | 0.579 | 0.661 | 0.433 | 2.1e-124 | |
| TAIR|locus:2129396 | 709 | HDG4 "AT4G17710" [Arabidopsis | 0.588 | 0.650 | 0.38 | 3.5e-107 |
| TAIR|locus:2127008 ANL2 "ANTHOCYANINLESS 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2367 (838.3 bits), Expect = 1.1e-245, P = 1.1e-245
Identities = 479/732 (65%), Positives = 558/732 (76%)
Query: 52 GEQFDPSVVGRIREEEFESRSGSDNVEGASGDDQEANEDGPPRKKKYHRHTPHQIQELES 111
G+ FD SV R REEE ESRSGSDNVEG SG+DQ+A D PPRKK+YHRHTP QIQELES
Sbjct: 93 GDTFDGSVNRRSREEEHESRSGSDNVEGISGEDQDA-ADKPPRKKRYHRHTPQQIQELES 151
Query: 112 FFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHENIILRQEHDKLRAE 171
FKECPHPDEKQR ELS+RL LE++Q+KFWFQNRRTQMKTQ+ERHEN +LRQE+DKLRAE
Sbjct: 152 MFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENALLRQENDKLRAE 211
Query: 172 NEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICILANKFLGRPLT 231
N +++AM+NP C NCGGPA+ G VS E LRIENARLKDEL R+C L KFLG
Sbjct: 212 NMSIREAMRNPICTNCGGPAMLGDVS-LEEHHLRIENARLKDELDRVCNLTGKFLGHHHN 270
Query: 232 SSAGPISPQGVNSSLELGVGRNGFGGVANIPGSMMQTS--LEFVEGPVMSLTMPHDRNML 289
NSSLEL VG N GG P L + + +++L
Sbjct: 271 HH--------YNSSLELAVGTNNNGGHFAFPPDFGGGGGCLPPQQQQSTVINGIDQKSVL 322
Query: 290 IDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRE 349
++LALTAMDEL+K+A+++ PLW+KSLDG RD NQ+EYMRTFS KP G TEASR
Sbjct: 323 LELALTAMDELVKLAQSEEPLWVKSLDGERDELNQDEYMRTFS---STKPTGLATEASRT 379
Query: 350 TGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQV 409
+GMVIINS AL+ET+MD+NRW EMFPC +AR+ TTDV+ S + GT NGALQ+M AE QV
Sbjct: 380 SGMVIINSLALVETLMDSNRWTEMFPCNVARATTTDVI-SGGMAGTINGALQLMNAELQV 438
Query: 410 LSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPN 469
LSPLVPVR FLRFCKQH EGVWAVVDVSID RE P RRLPSG VVQDV N
Sbjct: 439 LSPLVPVRNVNFLRFCKQHAEGVWAVVDVSIDPVRENSGGAP--VIRRLPSGCVVQDVSN 496
Query: 470 NYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCECLAVLMSSTITVQD 529
YSKVTW+EHAEYDE+ +H L RPLL SG+GFG+ +W+ATLQRQCECLA+L+SS++T D
Sbjct: 497 GYSKVTWVEHAEYDENQIHQLYRPLLRSGLGFGSQRWLATLQRQCECLAILISSSVTSHD 556
Query: 530 QSGISPIGRKSMLKLAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGE 589
+ I+P GRKSMLKLAQRMT+NFCSG+ A SV W KL VGNV DVRV+TRK+V+DPGE
Sbjct: 557 NTSITPGGRKSMLKLAQRMTFNFCSGISAPSVHNWSKLTVGNVDPDVRVMTRKSVDDPGE 616
Query: 590 PPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSNGGPLQEMVHIAKGQAPGNCAS 649
PPG+VL AAT+VWLP QRL+DF+R+ERMR EWDILSNGGP+QEM HI KGQ G S
Sbjct: 617 PPGIVLSAATSVWLPAAPQRLYDFLRNERMRCEWDILSNGGPMQEMAHITKGQDQG--VS 674
Query: 650 LLRAGAMNVNDSGMLILQETWNDSSGSLVVYAPVDVPSMSMVMNGGDSTCVALLPSGFAI 709
LLR+ AMN N S MLILQET D+SG+LVVYAPVD+P+M +VMNGGDS+ VALLPSGFA+
Sbjct: 675 LLRSNAMNANQSSMLILQETCIDASGALVVYAPVDIPAMHVVMNGGDSSYVALLPSGFAV 734
Query: 710 LPDGYFGHGGLINSNGTMVKTEGSSNESGGCLLTVGFQILVNSLPTAKLTVESVETVNNL 769
LPDG GG + +G + G GG LLTV FQILVN+LPTAKLTVESVETVNNL
Sbjct: 735 LPDGGIDGGG--SGDGDQ-RPVG-----GGSLLTVAFQILVNNLPTAKLTVESVETVNNL 786
Query: 770 ISCTIQKIKAAV 781
ISCT+QKI+AA+
Sbjct: 787 ISCTVQKIRAAL 798
|
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| TAIR|locus:2098866 HDG1 "AT3G61150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2135368 PDF2 "AT4G04890" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2119048 ATML1 "AT4G21750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2145116 HDG7 "AT5G52170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2206880 HDG11 "AT1G73360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2030913 HDG12 "homeodomain GLABROUS 12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2207235 HDG2 "AT1G05230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2131814 FWA "AT4G25530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2129396 HDG4 "AT4G17710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6EPF0 | ROC5_ORYSJ | No assigned EC number | 0.5815 | 0.8928 | 0.8706 | yes | no |
| A2YR02 | ROC7_ORYSI | No assigned EC number | 0.5094 | 0.8533 | 0.8931 | N/A | no |
| Q0WV12 | ANL2_ARATH | No assigned EC number | 0.6525 | 0.8966 | 0.8765 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 784 | |||
| cd08875 | 229 | cd08875, START_ArGLABRA2_like, C-terminal lipid-bi | 1e-108 | |
| pfam01852 | 205 | pfam01852, START, START domain | 1e-48 | |
| smart00234 | 205 | smart00234, START, in StAR and phosphatidylcholine | 6e-32 | |
| pfam00046 | 57 | pfam00046, Homeobox, Homeobox domain | 2e-23 | |
| cd00086 | 59 | cd00086, homeodomain, Homeodomain; DNA binding dom | 8e-21 | |
| smart00389 | 57 | smart00389, HOX, Homeodomain | 2e-19 | |
| COG5576 | 156 | COG5576, COG5576, Homeodomain-containing transcrip | 8e-11 | |
| pfam05920 | 40 | pfam05920, Homeobox_KN, Homeobox KN domain | 0.003 |
| >gnl|CDD|176884 cd08875, START_ArGLABRA2_like, C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins | Back alignment and domain information |
|---|
Score = 329 bits (845), Expect = e-108
Identities = 120/230 (52%), Positives = 160/230 (69%), Gaps = 1/230 (0%)
Query: 286 RNMLIDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTE 345
++ L++LA AMDEL+K+A+ PLWIKS ++ N +EY R F G KP GF TE
Sbjct: 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTE 60
Query: 346 ASRETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVA 405
ASR G+V++N+ L+E +MD N+W+E+FP +++++ T V+ + G +NG LQ+M A
Sbjct: 61 ASRACGLVMMNAIKLVEILMDVNKWSELFPGIVSKAKTLQVISTG-NGGNRNGTLQLMYA 119
Query: 406 EFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQ 465
E QV SPLVP R+ FLR+CKQ +G+WAVVDVSID + F RRLPSG ++Q
Sbjct: 120 ELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQ 179
Query: 466 DVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515
D+PN YSKVTW+EH E DE VH L R L+SSG+ FGA +WVATLQRQCE
Sbjct: 180 DMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells. Length = 229 |
| >gnl|CDD|216740 pfam01852, START, START domain | Back alignment and domain information |
|---|
| >gnl|CDD|214575 smart00234, START, in StAR and phosphatidylcholine transfer protein | Back alignment and domain information |
|---|
| >gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain | Back alignment and domain information |
|---|
| >gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner | Back alignment and domain information |
|---|
| >gnl|CDD|197696 smart00389, HOX, Homeodomain | Back alignment and domain information |
|---|
| >gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 784 | |||
| cd08875 | 229 | START_ArGLABRA2_like C-terminal lipid-binding STAR | 100.0 | |
| PF01852 | 206 | START: START domain; InterPro: IPR002913 START (St | 99.72 | |
| smart00234 | 206 | START in StAR and phosphatidylcholine transfer pro | 99.7 | |
| KOG0842 | 307 | consensus Transcription factor tinman/NKX2-3, cont | 99.68 | |
| KOG0483 | 198 | consensus Transcription factor HEX, contains HOX a | 99.66 | |
| KOG0484 | 125 | consensus Transcription factor PHOX2/ARIX, contain | 99.64 | |
| KOG0488 | 309 | consensus Transcription factor BarH and related HO | 99.62 | |
| KOG0487 | 308 | consensus Transcription factor Abd-B, contains HOX | 99.6 | |
| KOG0485 | 268 | consensus Transcription factor NKX-5.1/HMX1, conta | 99.6 | |
| KOG0489 | 261 | consensus Transcription factor zerknullt and relat | 99.59 | |
| KOG0494 | 332 | consensus Transcription factor CHX10 and related H | 99.59 | |
| KOG0848 | 317 | consensus Transcription factor Caudal, contains HO | 99.57 | |
| KOG0843 | 197 | consensus Transcription factor EMX1 and related HO | 99.56 | |
| KOG2251 | 228 | consensus Homeobox transcription factor [Transcrip | 99.52 | |
| KOG0850 | 245 | consensus Transcription factor DLX and related pro | 99.52 | |
| KOG0492 | 246 | consensus Transcription factor MSH, contains HOX d | 99.47 | |
| KOG0493 | 342 | consensus Transcription factor Engrailed, contains | 99.46 | |
| PF00046 | 57 | Homeobox: Homeobox domain not present here.; Inter | 99.44 | |
| KOG0844 | 408 | consensus Transcription factor EVX1, contains HOX | 99.36 | |
| TIGR01565 | 58 | homeo_ZF_HD homeobox domain, ZF-HD class. This mod | 99.36 | |
| KOG0486 | 351 | consensus Transcription factor PTX1, contains HOX | 99.34 | |
| cd00177 | 193 | START Lipid-binding START domain of mammalian STAR | 99.27 | |
| smart00389 | 56 | HOX Homeodomain. DNA-binding factors that are invo | 99.27 | |
| KOG4577 | 383 | consensus Transcription factor LIM3, contains LIM | 99.26 | |
| cd00086 | 59 | homeodomain Homeodomain; DNA binding domains invol | 99.26 | |
| COG5576 | 156 | Homeodomain-containing transcription factor [Trans | 99.25 | |
| KOG0491 | 194 | consensus Transcription factor BSH, contains HOX d | 99.22 | |
| KOG3802 | 398 | consensus Transcription factor OCT-1, contains POU | 99.16 | |
| KOG0847 | 288 | consensus Transcription factor, contains HOX domai | 99.12 | |
| cd08871 | 222 | START_STARD10-like Lipid-binding START domain of m | 99.1 | |
| cd08867 | 206 | START_STARD4_5_6-like Lipid-binding START domain o | 99.06 | |
| KOG0490 | 235 | consensus Transcription factor, contains HOX domai | 99.02 | |
| cd08868 | 208 | START_STARD1_3_like Cholesterol-binding START doma | 99.02 | |
| cd08904 | 204 | START_STARD6-like Lipid-binding START domain of ma | 98.87 | |
| KOG0849 | 354 | consensus Transcription factor PRD and related pro | 98.84 | |
| cd08903 | 208 | START_STARD5-like Lipid-binding START domain of ma | 98.72 | |
| cd08909 | 205 | START_STARD13-like C-terminal lipid-binding START | 98.67 | |
| cd08869 | 197 | START_RhoGAP C-terminal lipid-binding START domain | 98.64 | |
| PLN00188 | 719 | enhanced disease resistance protein (EDR2); Provis | 98.62 | |
| KOG1168 | 385 | consensus Transcription factor ACJ6/BRN-3, contain | 98.55 | |
| cd08905 | 209 | START_STARD1-like Cholesterol-binding START domain | 98.52 | |
| cd08902 | 202 | START_STARD4-like Lipid-binding START domain of ma | 98.39 | |
| cd08906 | 209 | START_STARD3-like Cholesterol-binding START domain | 98.35 | |
| KOG0775 | 304 | consensus Transcription factor SIX and related HOX | 98.21 | |
| cd08908 | 204 | START_STARD12-like C-terminal lipid-binding START | 98.12 | |
| cd08877 | 215 | START_2 Uncharacterized subgroup of the steroidoge | 98.05 | |
| cd08910 | 207 | START_STARD2-like Lipid-binding START domain of ma | 97.99 | |
| cd08876 | 195 | START_1 Uncharacterized subgroup of the steroidoge | 97.9 | |
| cd08874 | 205 | START_STARD9-like C-terminal START domain of mamma | 97.86 | |
| cd08907 | 205 | START_STARD8-like C-terminal lipid-binding START d | 97.82 | |
| cd08870 | 209 | START_STARD2_7-like Lipid-binding START domain of | 97.8 | |
| KOG0774 | 334 | consensus Transcription factor PBX and related HOX | 97.8 | |
| KOG0490 | 235 | consensus Transcription factor, contains HOX domai | 97.6 | |
| cd08872 | 235 | START_STARD11-like Ceramide-binding START domain o | 97.55 | |
| PF05920 | 40 | Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 | 97.47 | |
| cd08911 | 207 | START_STARD7-like Lipid-binding START domain of ma | 97.44 | |
| cd08871 | 222 | START_STARD10-like Lipid-binding START domain of m | 97.43 | |
| cd08873 | 235 | START_STARD14_15-like Lipid-binding START domain o | 97.38 | |
| KOG2252 | 558 | consensus CCAAT displacement protein and related h | 97.26 | |
| cd08907 | 205 | START_STARD8-like C-terminal lipid-binding START d | 96.86 | |
| KOG1146 | 1406 | consensus Homeobox protein [General function predi | 96.86 | |
| cd08913 | 240 | START_STARD14-like Lipid-binding START domain of m | 96.77 | |
| cd08914 | 236 | START_STARD15-like Lipid-binding START domain of m | 96.7 | |
| cd08869 | 197 | START_RhoGAP C-terminal lipid-binding START domain | 96.56 | |
| cd08904 | 204 | START_STARD6-like Lipid-binding START domain of ma | 96.47 | |
| cd08874 | 205 | START_STARD9-like C-terminal START domain of mamma | 96.28 | |
| cd08876 | 195 | START_1 Uncharacterized subgroup of the steroidoge | 95.83 | |
| cd08868 | 208 | START_STARD1_3_like Cholesterol-binding START doma | 95.62 | |
| cd00177 | 193 | START Lipid-binding START domain of mammalian STAR | 95.48 | |
| smart00234 | 206 | START in StAR and phosphatidylcholine transfer pro | 95.34 | |
| cd08906 | 209 | START_STARD3-like Cholesterol-binding START domain | 95.18 | |
| cd08877 | 215 | START_2 Uncharacterized subgroup of the steroidoge | 95.11 | |
| cd08903 | 208 | START_STARD5-like Lipid-binding START domain of ma | 95.08 | |
| cd08908 | 204 | START_STARD12-like C-terminal lipid-binding START | 94.95 | |
| cd08867 | 206 | START_STARD4_5_6-like Lipid-binding START domain o | 94.88 | |
| KOG0773 | 342 | consensus Transcription factor MEIS1 and related H | 94.59 | |
| cd08911 | 207 | START_STARD7-like Lipid-binding START domain of ma | 93.91 | |
| PF01852 | 206 | START: START domain; InterPro: IPR002913 START (St | 93.41 | |
| cd08873 | 235 | START_STARD14_15-like Lipid-binding START domain o | 93.22 | |
| cd08870 | 209 | START_STARD2_7-like Lipid-binding START domain of | 93.08 | |
| PF11569 | 56 | Homez: Homeodomain leucine-zipper encoding, Homez; | 93.08 | |
| cd08909 | 205 | START_STARD13-like C-terminal lipid-binding START | 92.66 | |
| cd08910 | 207 | START_STARD2-like Lipid-binding START domain of ma | 92.57 | |
| cd08875 | 229 | START_ArGLABRA2_like C-terminal lipid-binding STAR | 91.84 | |
| cd08914 | 236 | START_STARD15-like Lipid-binding START domain of m | 91.82 | |
| PRK09413 | 121 | IS2 repressor TnpA; Reviewed | 90.44 | |
| cd08902 | 202 | START_STARD4-like Lipid-binding START domain of ma | 89.45 | |
| cd08913 | 240 | START_STARD14-like Lipid-binding START domain of m | 88.25 | |
| cd08864 | 208 | SRPBCC_DUF3074 DUF3074, an uncharacterized ligand- | 87.59 | |
| KOG2761 | 219 | consensus START domain-containing proteins involve | 86.6 | |
| KOG4005 | 292 | consensus Transcription factor XBP-1 [Transcriptio | 85.54 | |
| cd08860 | 146 | TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom | 85.25 | |
| cd08905 | 209 | START_STARD1-like Cholesterol-binding START domain | 83.83 | |
| cd08866 | 144 | SRPBCC_11 Ligand-binding SRPBCC domain of an uncha | 83.37 | |
| PF04218 | 53 | CENP-B_N: CENP-B N-terminal DNA-binding domain; In | 82.73 | |
| cd08872 | 235 | START_STARD11-like Ceramide-binding START domain o | 82.47 | |
| KOG3623 | 1007 | consensus Homeobox transcription factor SIP1 [Tran | 81.75 | |
| cd05018 | 144 | CoxG Carbon monoxide dehydrogenase subunit G (CoxG | 81.48 | |
| KOG4196 | 135 | consensus bZIP transcription factor MafK [Transcri | 81.17 | |
| cd08861 | 142 | OtcD1_ARO-CYC_like N-terminal and C-terminal aroma | 81.07 |
| >cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-88 Score=697.69 Aligned_cols=229 Identities=53% Similarity=0.902 Sum_probs=221.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceEecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhc
Q 003954 286 RNMLIDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMM 365 (784)
Q Consensus 286 ~~~~~~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LVe~lm 365 (784)
|++|++||++||+||++||++++|||+++.++++|+||+|||.+.||+..|.++.||++|||||||+|.||+.+|||+||
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~lm 80 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEILM 80 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHHh
Confidence 56899999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred ChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeeeeeecccccccceeeEEEEeeeeecCCeEEEEEEeccCCCC
Q 003954 366 DANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNRE 445 (784)
Q Consensus 366 D~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~ael~~~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~~ 445 (784)
|+++|.++||+||++|+|++|| ++|.+|++||+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+.
T Consensus 81 D~~kW~~~Fp~iv~~a~tl~vi-stg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~ 159 (229)
T cd08875 81 DVNKWSELFPGIVSKAKTLQVI-STGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT 159 (229)
T ss_pred ChhhhhhhhhhhcceeeEEEEe-eCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999998864
Q ss_pred CCCCCCccceeecCCcceEeeCCCCccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHHH
Q 003954 446 GLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (784)
Q Consensus 446 ~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~ce 515 (784)
.+..++++||||+|||||||||+|||||||||||+|||++.+|.+||++++||+||||+||+++||||||
T Consensus 160 ~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 4444578999999999999999999999999999999999999999999999999999999999999997
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells. |
| >PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] | Back alignment and domain information |
|---|
| >smart00234 START in StAR and phosphatidylcholine transfer protein | Back alignment and domain information |
|---|
| >KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription] | Back alignment and domain information |
|---|
| >KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >KOG0485 consensus Transcription factor NKX-5 | Back alignment and domain information |
|---|
| >KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG2251 consensus Homeobox transcription factor [Transcription] | Back alignment and domain information |
|---|
| >KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF00046 Homeobox: Homeobox domain not present here | Back alignment and domain information |
|---|
| >KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class | Back alignment and domain information |
|---|
| >KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins | Back alignment and domain information |
|---|
| >smart00389 HOX Homeodomain | Back alignment and domain information |
|---|
| >KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner | Back alignment and domain information |
|---|
| >COG5576 Homeodomain-containing transcription factor [Transcription] | Back alignment and domain information |
|---|
| >KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >KOG0847 consensus Transcription factor, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins | Back alignment and domain information |
|---|
| >cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins | Back alignment and domain information |
|---|
| >KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins | Back alignment and domain information |
|---|
| >cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins | Back alignment and domain information |
|---|
| >KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins | Back alignment and domain information |
|---|
| >cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
| >cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
| >PLN00188 enhanced disease resistance protein (EDR2); Provisional | Back alignment and domain information |
|---|
| >KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins | Back alignment and domain information |
|---|
| >cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins | Back alignment and domain information |
|---|
| >cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins | Back alignment and domain information |
|---|
| >KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription] | Back alignment and domain information |
|---|
| >cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
| >cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family | Back alignment and domain information |
|---|
| >cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins | Back alignment and domain information |
|---|
| >cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family | Back alignment and domain information |
|---|
| >cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding | Back alignment and domain information |
|---|
| >cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
| >cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins | Back alignment and domain information |
|---|
| >KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains | Back alignment and domain information |
|---|
| >PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] | Back alignment and domain information |
|---|
| >cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins | Back alignment and domain information |
|---|
| >cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins | Back alignment and domain information |
|---|
| >cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins | Back alignment and domain information |
|---|
| >KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription] | Back alignment and domain information |
|---|
| >cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
| >KOG1146 consensus Homeobox protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins | Back alignment and domain information |
|---|
| >cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins | Back alignment and domain information |
|---|
| >cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
| >cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins | Back alignment and domain information |
|---|
| >cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding | Back alignment and domain information |
|---|
| >cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family | Back alignment and domain information |
|---|
| >cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins | Back alignment and domain information |
|---|
| >cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins | Back alignment and domain information |
|---|
| >smart00234 START in StAR and phosphatidylcholine transfer protein | Back alignment and domain information |
|---|
| >cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins | Back alignment and domain information |
|---|
| >cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family | Back alignment and domain information |
|---|
| >cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins | Back alignment and domain information |
|---|
| >cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
| >cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins | Back alignment and domain information |
|---|
| >KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] | Back alignment and domain information |
|---|
| >cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins | Back alignment and domain information |
|---|
| >PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] | Back alignment and domain information |
|---|
| >cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins | Back alignment and domain information |
|---|
| >cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins | Back alignment and domain information |
|---|
| >PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A | Back alignment and domain information |
|---|
| >cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
| >cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins | Back alignment and domain information |
|---|
| >cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins | Back alignment and domain information |
|---|
| >cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins | Back alignment and domain information |
|---|
| >PRK09413 IS2 repressor TnpA; Reviewed | Back alignment and domain information |
|---|
| >cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins | Back alignment and domain information |
|---|
| >cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins | Back alignment and domain information |
|---|
| >cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily | Back alignment and domain information |
|---|
| >KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4005 consensus Transcription factor XBP-1 [Transcription] | Back alignment and domain information |
|---|
| >cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains | Back alignment and domain information |
|---|
| >cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins | Back alignment and domain information |
|---|
| >cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
| >PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere | Back alignment and domain information |
|---|
| >cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains | Back alignment and domain information |
|---|
| >KOG3623 consensus Homeobox transcription factor SIP1 [Transcription] | Back alignment and domain information |
|---|
| >cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) | Back alignment and domain information |
|---|
| >KOG4196 consensus bZIP transcription factor MafK [Transcription] | Back alignment and domain information |
|---|
| >cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 784 | ||||
| 3a01_B | 67 | Crystal Structure Of Aristaless And Clawless Homeod | 1e-07 | ||
| 3lnq_A | 58 | Structure Of Aristaless Homeodomain In Complex With | 4e-06 | ||
| 3a02_A | 60 | Crystal Structure Of Aristaless Homeodomain Length | 4e-06 | ||
| 1fjl_A | 81 | Homeodomain From The Drosophila Paired Protein Boun | 4e-06 | ||
| 3a01_A | 93 | Crystal Structure Of Aristaless And Clawless Homeod | 7e-06 | ||
| 1puf_A | 77 | Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bo | 8e-06 | ||
| 1b8i_A | 81 | Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX | 9e-06 | ||
| 3d1n_I | 151 | Structure Of Human Brn-5 Transcription Factor In Co | 1e-05 | ||
| 2m0c_A | 75 | Solution Nmr Structure Of Homeobox Domain Of Human | 2e-05 | ||
| 1zq3_P | 68 | Nmr Solution Structure Of The Bicoid Homeodomain Bo | 2e-05 | ||
| 2l7m_P | 68 | Solution Structure Of The Pitx2 Homeodomain R24h Mu | 2e-05 | ||
| 2l7f_P | 68 | Solution Structure Of The Pitx2 Homeodomain Length | 3e-05 | ||
| 2dmq_A | 80 | Solution Structure Of The Homeobox Domain Of LimHOM | 4e-05 | ||
| 2dmu_A | 70 | Solution Structure Of The Homeobox Domain Of Homeob | 5e-05 | ||
| 2lp0_A | 60 | The Solution Structure Of Homeodomain-Protein Compl | 5e-05 | ||
| 1ahd_P | 68 | Determination Of The Nmr Solution Structure Of An A | 6e-05 | ||
| 9ant_A | 62 | Antennapedia Homeodomain-Dna Complex Length = 62 | 6e-05 | ||
| 3cmy_A | 61 | Structure Of A Homeodomain In Complex With Dna Leng | 7e-05 | ||
| 3hdd_A | 60 | Engrailed Homeodomain Dna Complex Length = 60 | 9e-05 | ||
| 1hdd_C | 61 | Crystal Structure Of An Engrailed Homeodomain-Dna C | 1e-04 | ||
| 1hom_A | 68 | Determination Of The Three-Dimensional Structure Of | 1e-04 | ||
| 1ftt_A | 68 | Thyroid Transcription Factor 1 Homeodomain (Rattus | 2e-04 | ||
| 1p7j_A | 59 | Crystal Structure Of Engrailed Homeodomain Mutant K | 2e-04 | ||
| 2r5y_A | 88 | Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HO | 2e-04 | ||
| 1p7i_A | 59 | Crystal Structure Of Engrailed Homeodomain Mutant K | 3e-04 | ||
| 3rkq_A | 58 | Nkx2.5 Homeodomain Dimer Bound To Anf-242 Dna Lengt | 3e-04 | ||
| 2hdd_A | 61 | Engrailed Homeodomain Q50k Variant Dna Complex Leng | 3e-04 | ||
| 1enh_A | 54 | Structural Studies Of The Engrailed Homeodomain Len | 3e-04 | ||
| 1ftz_A | 70 | Nuclear Magnetic Resonance Solution Structure Of Th | 4e-04 | ||
| 2p81_A | 44 | Engrailed Homeodomain Helix-Turn-Helix Motif Length | 5e-04 | ||
| 1du0_A | 57 | Engrailed Homeodomain Q50a Variant Dna Complex Leng | 5e-04 | ||
| 1nk2_P | 77 | VndNK-2 HomeodomainDNA COMPLEX, NMR, 20 STRUCTURES | 6e-04 | ||
| 1qry_A | 80 | Homeobox Protein Vnd (Ventral Nervous System Defect | 7e-04 | ||
| 1san_A | 62 | The Des(1-6)antennapedia Homeodomain: Comparison Of | 7e-04 | ||
| 2k40_A | 67 | Nmr Structure Of Hesx-1 Homeodomain Double Mutant R | 8e-04 |
| >pdb|3A01|B Chain B, Crystal Structure Of Aristaless And Clawless Homeodomains Bo Length = 67 | Back alignment and structure |
|
| >pdb|3LNQ|A Chain A, Structure Of Aristaless Homeodomain In Complex With Dna Length = 58 | Back alignment and structure |
| >pdb|3A02|A Chain A, Crystal Structure Of Aristaless Homeodomain Length = 60 | Back alignment and structure |
| >pdb|1FJL|A Chain A, Homeodomain From The Drosophila Paired Protein Bound To A Dna Oligonucleotide Length = 81 | Back alignment and structure |
| >pdb|3A01|A Chain A, Crystal Structure Of Aristaless And Clawless Homeodomains Bo Length = 93 | Back alignment and structure |
| >pdb|1PUF|A Chain A, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To Dna Length = 77 | Back alignment and structure |
| >pdb|1B8I|A Chain A, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX Length = 81 | Back alignment and structure |
| >pdb|3D1N|I Chain I, Structure Of Human Brn-5 Transcription Factor In Complex With Corticotrophin-Releasing Hormone Gene Promoter Length = 151 | Back alignment and structure |
| >pdb|2M0C|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Human Alx4, Northeast Structural Genomics Consortium (Nesg) Target Hr4490c Length = 75 | Back alignment and structure |
| >pdb|1ZQ3|P Chain P, Nmr Solution Structure Of The Bicoid Homeodomain Bound To The Consensus Dna Binding Site Taatcc Length = 68 | Back alignment and structure |
| >pdb|2L7M|P Chain P, Solution Structure Of The Pitx2 Homeodomain R24h Mutant Length = 68 | Back alignment and structure |
| >pdb|2L7F|P Chain P, Solution Structure Of The Pitx2 Homeodomain Length = 68 | Back alignment and structure |
| >pdb|2DMQ|A Chain A, Solution Structure Of The Homeobox Domain Of LimHOMEOBOX Protein Lhx9 Length = 80 | Back alignment and structure |
| >pdb|2DMU|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox Protein Goosecoid Length = 70 | Back alignment and structure |
| >pdb|2LP0|A Chain A, The Solution Structure Of Homeodomain-Protein Complex Length = 60 | Back alignment and structure |
| >pdb|1AHD|P Chain P, Determination Of The Nmr Solution Structure Of An Antennapedia Homeodomain-Dna Complex Length = 68 | Back alignment and structure |
| >pdb|9ANT|A Chain A, Antennapedia Homeodomain-Dna Complex Length = 62 | Back alignment and structure |
| >pdb|3CMY|A Chain A, Structure Of A Homeodomain In Complex With Dna Length = 61 | Back alignment and structure |
| >pdb|3HDD|A Chain A, Engrailed Homeodomain Dna Complex Length = 60 | Back alignment and structure |
| >pdb|1HDD|C Chain C, Crystal Structure Of An Engrailed Homeodomain-Dna Complex At 2.8 Angstroms Resolution: A Framework For Understanding Homeodomain-Dna Interactions Length = 61 | Back alignment and structure |
| >pdb|1HOM|A Chain A, Determination Of The Three-Dimensional Structure Of The Antennapedia Homeodomain From Drosophila In Solution By 1h Nuclear Magnetic Resonance Spectroscopy Length = 68 | Back alignment and structure |
| >pdb|1FTT|A Chain A, Thyroid Transcription Factor 1 Homeodomain (Rattus Norvegicus) Length = 68 | Back alignment and structure |
| >pdb|1P7J|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52e Length = 59 | Back alignment and structure |
| >pdb|2R5Y|A Chain A, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd Site Length = 88 | Back alignment and structure |
| >pdb|1P7I|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52a Length = 59 | Back alignment and structure |
| >pdb|3RKQ|A Chain A, Nkx2.5 Homeodomain Dimer Bound To Anf-242 Dna Length = 58 | Back alignment and structure |
| >pdb|2HDD|A Chain A, Engrailed Homeodomain Q50k Variant Dna Complex Length = 61 | Back alignment and structure |
| >pdb|1ENH|A Chain A, Structural Studies Of The Engrailed Homeodomain Length = 54 | Back alignment and structure |
| >pdb|1FTZ|A Chain A, Nuclear Magnetic Resonance Solution Structure Of The Fushi Tarazu Homeodomain From Drosophila And Comparison With The Antennapedia Homeodomain Length = 70 | Back alignment and structure |
| >pdb|2P81|A Chain A, Engrailed Homeodomain Helix-Turn-Helix Motif Length = 44 | Back alignment and structure |
| >pdb|1DU0|A Chain A, Engrailed Homeodomain Q50a Variant Dna Complex Length = 57 | Back alignment and structure |
| >pdb|1NK2|P Chain P, VndNK-2 HomeodomainDNA COMPLEX, NMR, 20 STRUCTURES Length = 77 | Back alignment and structure |
| >pdb|1QRY|A Chain A, Homeobox Protein Vnd (Ventral Nervous System Defective Protein) Length = 80 | Back alignment and structure |
| >pdb|1SAN|A Chain A, The Des(1-6)antennapedia Homeodomain: Comparison Of The Nmr Solution Structure And The Dna Binding Affinity With The Intact Antennapedia Homeodomain Length = 62 | Back alignment and structure |
| >pdb|2K40|A Chain A, Nmr Structure Of Hesx-1 Homeodomain Double Mutant R31lE42L Length = 67 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 2e-23
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 89 EDGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQ 148
G KY P Q++ LES F + P P +++ L + ++I WF RR +
Sbjct: 2 SSGSSGPTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKK 61
Query: 149 MKTQMERHEN 158
+ + +
Sbjct: 62 VNAEETKKSG 71
|
| >3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Length = 151 | Back alignment and structure |
|---|
| >2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 89 | Back alignment and structure |
|---|
| >1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Length = 61 | Back alignment and structure |
|---|
| >2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 89 | Back alignment and structure |
|---|
| >2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Length = 164 | Back alignment and structure |
|---|
| >2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72 | Back alignment and structure |
|---|
| >3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Length = 66 | Back alignment and structure |
|---|
| >1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 71 | Back alignment and structure |
|---|
| >2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 76 | Back alignment and structure |
|---|
| >1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Length = 160 | Back alignment and structure |
|---|
| >2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
| >2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
| >1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Length = 146 | Back alignment and structure |
|---|
| >2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Length = 84 | Back alignment and structure |
|---|
| >2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 | Back alignment and structure |
|---|
| >3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
| >2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
| >1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Length = 77 | Back alignment and structure |
|---|
| >1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Length = 81 | Back alignment and structure |
|---|
| >3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Length = 93 | Back alignment and structure |
|---|
| >2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
| >3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Length = 155 | Back alignment and structure |
|---|
| >2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Length = 80 | Back alignment and structure |
|---|
| >3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Length = 56 | Back alignment and structure |
|---|
| >2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Length = 61 | Back alignment and structure |
|---|
| >1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Length = 66 | Back alignment and structure |
|---|
| >2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Length = 62 | Back alignment and structure |
|---|
| >3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Length = 58 | Back alignment and structure |
|---|
| >1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Length = 58 | Back alignment and structure |
|---|
| >2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 80 | Back alignment and structure |
|---|
| >2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Length = 73 | Back alignment and structure |
|---|
| >1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Length = 68 | Back alignment and structure |
|---|
| >2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 69 | Back alignment and structure |
|---|
| >2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Length = 77 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 70 | Back alignment and structure |
|---|
| >2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Length = 67 | Back alignment and structure |
|---|
| >2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 70 | Back alignment and structure |
|---|
| >1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Length = 81 | Back alignment and structure |
|---|
| >1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Length = 68 | Back alignment and structure |
|---|
| >1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Length = 68 | Back alignment and structure |
|---|
| >1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Length = 68 | Back alignment and structure |
|---|
| >3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Length = 60 | Back alignment and structure |
|---|
| >2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Length = 63 | Back alignment and structure |
|---|
| >2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 76 | Back alignment and structure |
|---|
| >2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Length = 73 | Back alignment and structure |
|---|
| >1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Length = 60 | Back alignment and structure |
|---|
| >2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 95 | Back alignment and structure |
|---|
| >2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Length = 88 | Back alignment and structure |
|---|
| >1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Length = 97 | Back alignment and structure |
|---|
| >1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72 | Back alignment and structure |
|---|
| >1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Length = 87 | Back alignment and structure |
|---|
| >1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Length = 83 | Back alignment and structure |
|---|
| >1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Length = 194 | Back alignment and structure |
|---|
| >2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Length = 221 | Back alignment and structure |
|---|
| >1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A Length = 99 | Back alignment and structure |
|---|
| >1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Length = 60 | Back alignment and structure |
|---|
| >2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 64 | Back alignment and structure |
|---|
| >1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Length = 73 | Back alignment and structure |
|---|
| >2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
| >2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Length = 89 | Back alignment and structure |
|---|
| >3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} Length = 67 | Back alignment and structure |
|---|
| >1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 73 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 784 | |||
| 2r55_A | 231 | STAR-related lipid transfer protein 5; alpha and b | 99.82 | |
| 2dmt_A | 80 | Homeobox protein BARH-like 1; homeobox domain, thr | 99.7 | |
| 2da3_A | 80 | Alpha-fetoprotein enhancer binding protein; homeob | 99.69 | |
| 2kt0_A | 84 | Nanog, homeobox protein nanog; homeodomain, struct | 99.69 | |
| 3a01_A | 93 | Homeodomain-containing protein; homeodomain, prote | 99.69 | |
| 1nk2_P | 77 | Homeobox protein VND; homeodomain, DNA-binding pro | 99.68 | |
| 2cue_A | 80 | Paired box protein PAX6; homeobox domain, transcri | 99.68 | |
| 2dmq_A | 80 | LIM/homeobox protein LHX9; homeobox domain, three | 99.67 | |
| 1wh5_A | 80 | ZF-HD homeobox family protein; structural genomics | 99.67 | |
| 1fjl_A | 81 | Paired protein; DNA-binding protein, paired BOX, t | 99.67 | |
| 2dms_A | 80 | Homeobox protein OTX2; homeobox domain, three heli | 99.66 | |
| 1wh7_A | 80 | ZF-HD homeobox family protein; homeobox domain, st | 99.66 | |
| 2cra_A | 70 | Homeobox protein HOX-B13; DNA-binding, transcripti | 99.66 | |
| 2dmu_A | 70 | Homeobox protein goosecoid; homeobox domain, three | 99.66 | |
| 2h1k_A | 63 | IPF-1, pancreatic and duodenal homeobox 1, homeodo | 99.66 | |
| 1puf_A | 77 | HOX-1.7, homeobox protein HOX-A9; homeodomian, pro | 99.66 | |
| 2vi6_A | 62 | Homeobox protein nanog; homeodomain, DNA-binding, | 99.65 | |
| 2e1o_A | 70 | Homeobox protein PRH; DNA binding protein, structu | 99.65 | |
| 1zq3_P | 68 | PRD-4, homeotic bicoid protein; protein-DNA comple | 99.65 | |
| 2da2_A | 70 | Alpha-fetoprotein enhancer binding protein; homeob | 99.65 | |
| 2hdd_A | 61 | Protein (engrailed homeodomain Q50K); DNA binding, | 99.64 | |
| 2djn_A | 70 | Homeobox protein DLX-5; structural genomics, NPPSF | 99.64 | |
| 2da1_A | 70 | Alpha-fetoprotein enhancer binding protein; homeob | 99.64 | |
| 1ig7_A | 58 | Homeotic protein MSX-1; helix-turn-helix, transcri | 99.64 | |
| 1ahd_P | 68 | Antennapedia protein mutant; DNA binding protein/D | 99.64 | |
| 1yz8_P | 68 | Pituitary homeobox 2; DNA binding protein, transcr | 99.63 | |
| 1ftt_A | 68 | TTF-1 HD, thyroid transcription factor 1 homeodoma | 99.63 | |
| 2l7z_A | 73 | Homeobox protein HOX-A13; gene regulation; NMR {Ho | 99.62 | |
| 2da4_A | 80 | Hypothetical protein DKFZP686K21156; homeobox doma | 99.62 | |
| 1jgg_A | 60 | Segmentation protein EVEN-skipped; homeodomain, pr | 99.62 | |
| 1b8i_A | 81 | Ultrabithorax, protein (ultrabithorax homeotic pro | 99.62 | |
| 1bw5_A | 66 | ISL-1HD, insulin gene enhancer protein ISL-1; DNA- | 99.62 | |
| 2r5y_A | 88 | Homeotic protein sex combs reduced; homeodomain; H | 99.62 | |
| 3nar_A | 96 | ZHX1, zinc fingers and homeoboxes protein 1; corep | 99.61 | |
| 3rkq_A | 58 | Homeobox protein NKX-2.5; helix-turn-helix, DNA bi | 99.61 | |
| 2m0c_A | 75 | Homeobox protein aristaless-like 4; structural gen | 99.6 | |
| 1akh_A | 61 | Protein (mating-type protein A-1); complex (TWO DN | 99.6 | |
| 2hi3_A | 73 | Homeodomain-only protein; transcription; NMR {Mus | 99.6 | |
| 1uhs_A | 72 | HOP, homeodomain only protein; structural genomics | 99.6 | |
| 2da5_A | 75 | Zinc fingers and homeoboxes protein 3; homeobox do | 99.6 | |
| 2k40_A | 67 | Homeobox expressed in ES cells 1; thermostable hom | 99.6 | |
| 3a02_A | 60 | Homeobox protein aristaless; homeodomain, developm | 99.6 | |
| 3a03_A | 56 | T-cell leukemia homeobox protein 2; homeodomain, d | 99.59 | |
| 1b72_A | 97 | Protein (homeobox protein HOX-B1); homeodomain, DN | 99.59 | |
| 2cuf_A | 95 | FLJ21616 protein; homeobox domain, hepatocyte tran | 99.59 | |
| 2ecc_A | 76 | Homeobox and leucine zipper protein homez; homeobo | 99.58 | |
| 1x2n_A | 73 | Homeobox protein pknox1; homeobox domain, structur | 99.58 | |
| 2ly9_A | 74 | Zinc fingers and homeoboxes protein 1; structural | 99.57 | |
| 2ecb_A | 89 | Zinc fingers and homeoboxes protein 1; homeobox do | 99.56 | |
| 2dn0_A | 76 | Zinc fingers and homeoboxes protein 3; triple home | 99.56 | |
| 2dmn_A | 83 | Homeobox protein TGIF2LX; TGFB-induced factor 2-li | 99.55 | |
| 1puf_B | 73 | PRE-B-cell leukemia transcription factor-1; homeod | 99.55 | |
| 2da6_A | 102 | Hepatocyte nuclear factor 1-beta; homeobox domain, | 99.54 | |
| 1e3o_C | 160 | Octamer-binding transcription factor 1; transcript | 99.54 | |
| 1au7_A | 146 | Protein PIT-1, GHF-1; complex (DNA-binding protein | 99.54 | |
| 2cqx_A | 72 | LAG1 longevity assurance homolog 5; homeodomain, D | 99.53 | |
| 1b72_B | 87 | Protein (PBX1); homeodomain, DNA, complex, DNA-bin | 99.53 | |
| 2dmp_A | 89 | Zinc fingers and homeoboxes protein 2; homeobox do | 99.53 | |
| 1du6_A | 64 | PBX1, homeobox protein PBX1; homeodomain, gene reg | 99.53 | |
| 1k61_A | 60 | Mating-type protein alpha-2; protein-DNA complex, | 99.53 | |
| 1wi3_A | 71 | DNA-binding protein SATB2; homeodomain, helix-turn | 99.52 | |
| 2xsd_C | 164 | POU domain, class 3, transcription factor 1; trans | 99.52 | |
| 1mnm_C | 87 | Protein (MAT alpha-2 transcriptional repressor); t | 99.51 | |
| 3d1n_I | 151 | POU domain, class 6, transcription factor 1; prote | 99.5 | |
| 1lfb_A | 99 | Liver transcription factor (LFB1); transcription r | 99.5 | |
| 1le8_B | 83 | Mating-type protein alpha-2; matalpha2, isothermal | 99.5 | |
| 2l9r_A | 69 | Homeobox protein NKX-3.1; structural genomics, nor | 99.49 | |
| 3nau_A | 66 | Zinc fingers and homeoboxes protein 2; ZHX2, corep | 99.49 | |
| 1x2m_A | 64 | LAG1 longevity assurance homolog 6; homeobox domai | 99.46 | |
| 3l1p_A | 155 | POU domain, class 5, transcription factor 1; POU, | 99.45 | |
| 2e19_A | 64 | Transcription factor 8; homeobox domain, structura | 99.44 | |
| 2d5v_A | 164 | Hepatocyte nuclear factor 6; transcription factor, | 99.42 | |
| 3k2a_A | 67 | Homeobox protein MEIS2; homeobox domain, DNA-bindi | 99.34 | |
| 1ic8_A | 194 | Hepatocyte nuclear factor 1-alpha; transcription r | 99.29 | |
| 1em2_A | 229 | MLN64 protein; beta barrel, lipid binding protein; | 99.25 | |
| 3p0l_A | 221 | Steroidogenic acute regulatory protein, mitochond; | 99.24 | |
| 2pso_A | 237 | STAR-related lipid transfer protein 13; alpha and | 99.23 | |
| 2h8r_A | 221 | Hepatocyte nuclear factor 1-beta; trasncription fa | 99.14 | |
| 2lk2_A | 89 | Homeobox protein TGIF1; NESG, structural genomics, | 99.11 | |
| 2da7_A | 71 | Zinc finger homeobox protein 1B; homeobox domain, | 99.05 | |
| 1mh3_A | 421 | Maltose binding-A1 homeodomain protein chimera; MA | 98.99 | |
| 1ln1_A | 214 | PC-TP, phosphatidylcholine transfer protein; start | 98.96 | |
| 1jss_A | 224 | Stard4, cholesterol-regulated start protein 4; sta | 98.95 | |
| 3fo5_A | 258 | Thioesterase, adipose associated, isoform BFIT2; o | 98.81 | |
| 3qsz_A | 189 | STAR-related lipid transfer protein; structural ge | 98.53 | |
| 2e3n_A | 255 | Lipid-transfer protein CERT; ceramide transfer, li | 98.4 | |
| 2nzz_A | 37 | Penetratin conjugated GAS (374-394) peptide; confo | 98.33 | |
| 2r55_A | 231 | STAR-related lipid transfer protein 5; alpha and b | 97.53 | |
| 3qsz_A | 189 | STAR-related lipid transfer protein; structural ge | 97.2 | |
| 1jss_A | 224 | Stard4, cholesterol-regulated start protein 4; sta | 96.88 | |
| 1ln1_A | 214 | PC-TP, phosphatidylcholine transfer protein; start | 96.78 | |
| 3p0l_A | 221 | Steroidogenic acute regulatory protein, mitochond; | 96.64 | |
| 2pso_A | 237 | STAR-related lipid transfer protein 13; alpha and | 96.46 | |
| 1em2_A | 229 | MLN64 protein; beta barrel, lipid binding protein; | 96.15 | |
| 3fo5_A | 258 | Thioesterase, adipose associated, isoform BFIT2; o | 94.66 | |
| 2d4r_A | 147 | Hypothetical protein TTHA0849; start domain, struc | 94.28 | |
| 2e3n_A | 255 | Lipid-transfer protein CERT; ceramide transfer, li | 93.04 | |
| 3tfz_A | 172 | Cyclase; helix-GRIP, BET V1-like superfamily, bios | 86.27 | |
| 3tl1_A | 159 | WHIE ORF VI, polyketide cyclase; helix-GRIP fold, | 85.27 | |
| 2jn6_A | 97 | Protein CGL2762, transposase; GFT PSI-2, protein s | 83.66 | |
| 2ys9_A | 70 | Homeobox and leucine zipper protein homez; homeodo | 81.25 | |
| 3tvq_A | 169 | Multifunctional cyclase-dehydratase-3-O-methyl TR | 81.17 |
| >2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=184.68 Aligned_cols=202 Identities=12% Similarity=0.138 Sum_probs=157.4
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCCceEecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHh
Q 003954 285 DRNMLIDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETM 364 (784)
Q Consensus 285 ~~~~~~~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~~~~~eAsR~~~~V~~~~~~LVe~l 364 (784)
+++.++++|++||+||+++++. +..|....+. ++.+.|.+.. .+..+.+-|..++|.+.+.+|+++|
T Consensus 20 ~~~~y~~~a~~~~~~~l~~~~~-~~~W~~~~~~--------~gv~v~~~~~----~~~~~~~~k~~~~v~~~~~~v~~~l 86 (231)
T 2r55_A 20 FQSMAAQMSEAVAEKMLQYRRD-TAGWKICREG--------NGVSVSWRPS----VEFPGNLYRGEGIVYGTLEEVWDCV 86 (231)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC-CSSCEEEECC--------SSEEEEEEEC----SSSSSEEEEEEEEESSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcC-CCCCEEEEeC--------CCEEEEEEcc----CCCCCcEEEEEEEECCCHHHHHHHH
Confidence 4788999999999999999975 4789876432 1223332211 1223578899999999999999999
Q ss_pred cC-----hhhHhhhcccccccceEeeEeeCCCCCCCCCCeeEEeee-eeecccccccceeeEEEEeeeeecCCeEEEEEE
Q 003954 365 MD-----ANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVA-EFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDV 438 (784)
Q Consensus 365 mD-----~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~a-el~~~SpLvp~Re~~fLRyckq~~~g~w~VvDv 438 (784)
|+ +.+|-+.| ..++.++.| . +.-.++|. ....++++|++|||.++||+++.++|.|+|+.+
T Consensus 87 ~~~d~~~r~~Wd~~~----~~~~vle~i-~--------~~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~ 153 (231)
T 2r55_A 87 KPAVGGLRVKWDENV----TGFEIIQSI-T--------DTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNAT 153 (231)
T ss_dssp CC--CCSHHHHCTTC----SEEEEEEEC-S--------SSEEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEE
T ss_pred HhhCcchhhhhcccc----ceeEEEEEc-C--------CCEEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEE
Confidence 77 88997763 468888887 3 12234442 223456799999999999999999999999999
Q ss_pred eccCCCCCCCCCCccceeecCCcceEeeCC--CCccEEEEEEeeeecccccccccccccccccchhHHHHHHHHHHHHHH
Q 003954 439 SIDTNREGLSADPFQTYRRLPSGFVVQDVP--NNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCEC 516 (784)
Q Consensus 439 S~d~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rwla~LqR~cer 516 (784)
|++... .+....++|++.++|||+||+++ +|.|+|||+.|++..-+ +| +.++++.+..++.+|++.|+++|+.
T Consensus 154 Sv~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~ 228 (231)
T 2r55_A 154 HVEHPL-CPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQ 228 (231)
T ss_dssp ECCCTT-SCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred eccCCC-CCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 998532 22234789999999999999998 78999999999998876 44 5788899999999999999999985
Q ss_pred H
Q 003954 517 L 517 (784)
Q Consensus 517 l 517 (784)
+
T Consensus 229 ~ 229 (231)
T 2r55_A 229 F 229 (231)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A | Back alignment and structure |
|---|
| >2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B | Back alignment and structure |
|---|
| >2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} | Back alignment and structure |
|---|
| >1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A | Back alignment and structure |
|---|
| >2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} | Back alignment and structure |
|---|
| >2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A | Back alignment and structure |
|---|
| >2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A | Back alignment and structure |
|---|
| >1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P | Back alignment and structure |
|---|
| >1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* | Back alignment and structure |
|---|
| >2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* | Back alignment and structure |
|---|
| >1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* | Back alignment and structure |
|---|
| >3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* | Back alignment and structure |
|---|
| >2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A | Back alignment and structure |
|---|
| >3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} | Back alignment and structure |
|---|
| >1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* | Back alignment and structure |
|---|
| >2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A | Back alignment and structure |
|---|
| >1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 | Back alignment and structure |
|---|
| >2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P | Back alignment and structure |
|---|
| >2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} | Back alignment and structure |
|---|
| >1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A | Back alignment and structure |
|---|
| >1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* | Back alignment and structure |
|---|
| >2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A | Back alignment and structure |
|---|
| >2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A | Back alignment and structure |
|---|
| >3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 | Back alignment and structure |
|---|
| >1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 | Back alignment and structure |
|---|
| >3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 | Back alignment and structure |
|---|
| >2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A | Back alignment and structure |
|---|
| >1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* | Back alignment and structure |
|---|
| >1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 | Back alignment and structure |
|---|
| >3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} | Back alignment and structure |
|---|
| >2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* | Back alignment and structure |
|---|
| >2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A | Back alignment and structure |
|---|
| >2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} | Back alignment and structure |
|---|
| >1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 | Back alignment and structure |
|---|
| >1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* | Back alignment and structure |
|---|
| >3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 | Back alignment and structure |
|---|
| >1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 | Back alignment and structure |
|---|
| >3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 | Back alignment and structure |
|---|
| >2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* | Back alignment and structure |
|---|
| >3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP} | Back alignment and structure |
|---|
| >3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A | Back alignment and structure |
|---|
| >2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19 | Back alignment and structure |
|---|
| >2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 784 | ||||
| d1pufa_ | 77 | a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus m | 4e-20 | |
| d2e1oa1 | 57 | a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo | 7e-19 | |
| d1k61a_ | 60 | a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast | 2e-18 | |
| d9anta_ | 56 | a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila | 2e-18 | |
| d1wh7a_ | 80 | a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Tha | 4e-18 | |
| d1zq3p1 | 67 | a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fl | 8e-18 | |
| d2cuea1 | 68 | a.4.1.1 (A:7-74) Paired box protein pax6 {Human (H | 1e-17 | |
| d1ftta_ | 68 | a.4.1.1 (A:) Thyroid transcription factor 1 homeod | 2e-17 | |
| d1vnda_ | 77 | a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophi | 5e-17 | |
| d1pufb_ | 73 | a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 96 | 1e-16 | |
| d2ecba1 | 76 | a.4.1.1 (A:8-83) Zinc fingers and homeoboxes prote | 1e-16 | |
| d1fjla_ | 65 | a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila | 2e-16 | |
| d2craa1 | 58 | a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human ( | 5e-16 | |
| d1x2ma1 | 52 | a.4.1.1 (A:8-59) Lag1 longevity assurance homolog | 7e-16 | |
| d1x2na1 | 62 | a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H | 7e-16 | |
| d1jgga_ | 57 | a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly ( | 2e-15 | |
| d1yz8p1 | 60 | a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo | 2e-15 | |
| d1le8a_ | 53 | a.4.1.1 (A:) Mating type protein A1 Homeodomain {B | 3e-15 | |
| d2cqxa1 | 59 | a.4.1.1 (A:8-66) LAG1 longevity assurance homolog | 4e-15 | |
| d1s7ea1 | 50 | a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {M | 4e-15 | |
| d1bw5a_ | 66 | a.4.1.1 (A:) Insulin gene enhancer protein isl-1 { | 4e-15 | |
| d1au7a1 | 58 | a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Ra | 8e-15 | |
| d1b72a_ | 88 | a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo | 2e-14 | |
| d1p7ia_ | 53 | a.4.1.1 (A:) Engrailed Homeodomain {Drosophila mel | 3e-14 | |
| d1ig7a_ | 58 | a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculu | 3e-14 | |
| d2cufa1 | 82 | a.4.1.1 (A:8-89) Homeobox-containing protein 1, HM | 1e-13 | |
| d1ocpa_ | 67 | a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus mus | 1e-13 | |
| d1wi3a_ | 71 | a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Hom | 2e-13 | |
| d1uhsa_ | 72 | a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse | 6e-12 | |
| d2ecca1 | 76 | a.4.1.1 (A:1-76) Homeobox-leucine zipper protein H | 7e-12 | |
| d1e3oc1 | 57 | a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human ( | 9e-12 | |
| d1lfba_ | 78 | a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HN | 3e-11 | |
| d2jn6a1 | 89 | a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 | 0.004 |
| >d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: Homeodomain domain: Homeobox protein hox-a9 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 83.0 bits (205), Expect = 4e-20
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152
+KK +T HQ ELE F + +R E++R L L +Q+K WFQNRR +MK
Sbjct: 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71
Query: 153 ME 154
+
Sbjct: 72 NK 73
|
| >d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
| >d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 | Back information, alignment and structure |
|---|
| >d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 56 | Back information, alignment and structure |
|---|
| >d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 80 | Back information, alignment and structure |
|---|
| >d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 67 | Back information, alignment and structure |
|---|
| >d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 | Back information, alignment and structure |
|---|
| >d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 68 | Back information, alignment and structure |
|---|
| >d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 77 | Back information, alignment and structure |
|---|
| >d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 | Back information, alignment and structure |
|---|
| >d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 | Back information, alignment and structure |
|---|
| >d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 65 | Back information, alignment and structure |
|---|
| >d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Length = 58 | Back information, alignment and structure |
|---|
| >d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 | Back information, alignment and structure |
|---|
| >d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 | Back information, alignment and structure |
|---|
| >d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 57 | Back information, alignment and structure |
|---|
| >d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 | Back information, alignment and structure |
|---|
| >d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 53 | Back information, alignment and structure |
|---|
| >d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 59 | Back information, alignment and structure |
|---|
| >d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 | Back information, alignment and structure |
|---|
| >d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 66 | Back information, alignment and structure |
|---|
| >d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 58 | Back information, alignment and structure |
|---|
| >d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
| >d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 53 | Back information, alignment and structure |
|---|
| >d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 58 | Back information, alignment and structure |
|---|
| >d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Length = 82 | Back information, alignment and structure |
|---|
| >d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 67 | Back information, alignment and structure |
|---|
| >d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 | Back information, alignment and structure |
|---|
| >d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Length = 72 | Back information, alignment and structure |
|---|
| >d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Length = 76 | Back information, alignment and structure |
|---|
| >d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
| >d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Length = 78 | Back information, alignment and structure |
|---|
| >d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]} Length = 89 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 784 | |||
| d1pufa_ | 77 | Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax | 99.73 | |
| d2craa1 | 58 | Homeobox protein hox-b13 {Human (Homo sapiens) [Ta | 99.72 | |
| d2e1oa1 | 57 | Homeobox protein prh {Human (Homo sapiens) [TaxId: | 99.71 | |
| d1ig7a_ | 58 | Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 | 99.71 | |
| d1zq3p1 | 67 | Homeotic bicoid protein {Fruit fly (Drosophila mel | 99.7 | |
| d9anta_ | 56 | Antennapedia Homeodomain {Drosophila melanogaster | 99.7 | |
| d1jgga_ | 57 | Even-skipped homeodomain {Fruit fly (Drosophila me | 99.7 | |
| d1fjla_ | 65 | Paired protein {Fruit fly (Drosophila melanogaster | 99.69 | |
| d1vnda_ | 77 | VND/NK-2 protein {Fruit fly (Drosophila melanogast | 99.68 | |
| d2cuea1 | 68 | Paired box protein pax6 {Human (Homo sapiens) [Tax | 99.68 | |
| d1b72a_ | 88 | Homeobox protein hox-b1 {Human (Homo sapiens) [Tax | 99.68 | |
| d1p7ia_ | 53 | Engrailed Homeodomain {Drosophila melanogaster [Ta | 99.67 | |
| d1ftta_ | 68 | Thyroid transcription factor 1 homeodomain {Rat (R | 99.67 | |
| d1uhsa_ | 72 | Homeodomain-only protein, Hop {Mouse (Mus musculus | 99.66 | |
| d1yz8p1 | 60 | Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: | 99.65 | |
| d1bw5a_ | 66 | Insulin gene enhancer protein isl-1 {Rat (Rattus n | 99.62 | |
| d1ocpa_ | 67 | Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId | 99.62 | |
| d2cufa1 | 82 | Homeobox-containing protein 1, HMBOX1 (Flj21616) { | 99.6 | |
| d1le8a_ | 53 | Mating type protein A1 Homeodomain {Baker's yeast | 99.6 | |
| d1au7a1 | 58 | Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta | 99.59 | |
| d1wi3a_ | 71 | DNA-binding protein SATB2 {Human (Homo sapiens) [T | 99.59 | |
| d1wh7a_ | 80 | ZF-HD homeobox protein At4g24660 {Thale cress (Ara | 99.59 | |
| d1e3oc1 | 57 | Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId | 99.56 | |
| d1s7ea1 | 50 | Hepatocyte nuclear factor 6 {Mouse (Mus musculus) | 99.51 | |
| d2ecba1 | 76 | Zinc fingers and homeoboxes protein 1, ZHX1 {Human | 99.5 | |
| d1pufb_ | 73 | pbx1 {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d2ecca1 | 76 | Homeobox-leucine zipper protein Homez {Human (Homo | 99.47 | |
| d1x2ma1 | 52 | Lag1 longevity assurance homolog 6, LASS6 {Mouse ( | 99.43 | |
| d1lfba_ | 78 | Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat | 99.4 | |
| d2cqxa1 | 59 | LAG1 longevity assurance homolog 5, LASS5 {Mouse ( | 99.39 | |
| d1k61a_ | 60 | mat alpha2 Homeodomain {Baker's yeast (Saccharomyc | 99.38 | |
| d1x2na1 | 62 | Homeobox protein pknox1 {Human (Homo sapiens) [Tax | 99.29 | |
| d1jssa_ | 199 | Cholesterol-regulated Start protein 4 (Stard4). {M | 99.0 | |
| d2psoa1 | 197 | Star-related lipid transfer protein 13 {Human (Hom | 98.65 | |
| d1em2a_ | 214 | Lipid transport domain of Mln64 {Human (Homo sapie | 98.63 | |
| d1ln1a_ | 203 | Phosphatidylcholine transfer protein {Human (Homo | 98.34 | |
| d1em2a_ | 214 | Lipid transport domain of Mln64 {Human (Homo sapie | 96.61 | |
| d1ln1a_ | 203 | Phosphatidylcholine transfer protein {Human (Homo | 96.44 | |
| d1jssa_ | 199 | Cholesterol-regulated Start protein 4 (Stard4). {M | 96.08 | |
| d2psoa1 | 197 | Star-related lipid transfer protein 13 {Human (Hom | 95.66 | |
| d2d4ra1 | 146 | Hypothetical protein TTHA0849 {Thermus thermophilu | 90.69 |
| >d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: Homeodomain domain: Homeobox protein hox-a9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.73 E-value=8.3e-19 Score=149.93 Aligned_cols=66 Identities=36% Similarity=0.451 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeeccchhhHHHHHHHhh
Q 003954 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERH 156 (784)
Q Consensus 91 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~~~ 156 (784)
.+.+||+|++||++|+..||.+|+.++||+..+|++||..|||+++||++||||||+|+|+..+..
T Consensus 10 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~l~l~~~qV~iWFqNrR~k~kr~~~~~ 75 (77)
T d1pufa_ 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHhhhhhhhhHHHHHHHHHHh
Confidence 345578899999999999999999999999999999999999999999999999999999876543
|
| >d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
| >d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|