Citrus Sinensis ID: 003957
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 784 | 2.2.26 [Sep-21-2011] | |||||||
| Q8S8F2 | 940 | BTB/POZ domain-containing | yes | no | 0.954 | 0.795 | 0.488 | 0.0 | |
| Q5R3Z8 | 423 | F-box/LRR-repeat protein | yes | no | 0.338 | 0.626 | 0.264 | 2e-08 | |
| Q9UKC9 | 423 | F-box/LRR-repeat protein | yes | no | 0.338 | 0.626 | 0.264 | 2e-08 | |
| Q8BH16 | 423 | F-box/LRR-repeat protein | yes | no | 0.338 | 0.626 | 0.261 | 5e-08 | |
| A6H779 | 423 | F-box/LRR-repeat protein | yes | no | 0.315 | 0.583 | 0.261 | 2e-06 | |
| Q9C5D2 | 610 | F-box/LRR-repeat protein | no | no | 0.432 | 0.555 | 0.24 | 9e-06 |
| >sp|Q8S8F2|FBL11_ARATH BTB/POZ domain-containing protein FBL11 OS=Arabidopsis thaliana GN=FBL11 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/795 (48%), Positives = 526/795 (66%), Gaps = 47/795 (5%)
Query: 1 MWAMSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDAN--IAQLESSNRVEDD 58
M S K F N+PY LL+ CVKHP LTV SEM L D LLIW+DA ++ L S++ ++
Sbjct: 182 MLVKSDKYFGNVPYELLMWCVKHPHLTVHSEMDLVDGLLIWLDAGGRLSDLPESSQ-DNT 240
Query: 59 LTILKEIRISILPLWFAAGKRRSSYFSKLSDESVNSILRLVKVHPACLIKVLEDVELKHL 118
+ +++++R S+LPLWF AG+ +S FSK +D+S+ + +L+K+ CL+ L D +
Sbjct: 241 INLMEQVRFSLLPLWFIAGRSKSHGFSKFADQSIELVTKLMKMPSTCLVDSLTDGPPTDV 300
Query: 119 RIRLTEYSEKVNLSGCPQMTSAILLLSVLDSLHCLDPTSRKIFECL-------DKDQSRI 171
R+RLTEYSE ++LSGCPQ+ A LLLS+L + + + RK E ++ Q +I
Sbjct: 301 RVRLTEYSEILDLSGCPQLNEASLLLSILPNSYFANLRWRKSLESFLKNPDDDERHQEQI 360
Query: 172 PLGFLPIFSFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLV 231
LPI SFE+V+E++I KC L + ++CFSKSFPSLR ++AAY L+ K L +L+
Sbjct: 361 SHRTLPILSFESVKEIDISKCQRLDYKVVIKCFSKSFPSLRKLRAAYLLNIKVSTLLELL 420
Query: 232 QKCPMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSPS 291
L EVDLTVD SP+IP + SV S L S
Sbjct: 421 LNFRELTEVDLTVDVSPIIPVQASVFYSGQGHCLL------------------------S 456
Query: 292 KITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVC 351
IT+LTLEGRSD+CD +L IS+ C SL Y+NIKGC ++D CI+++I+RC KL S+IVC
Sbjct: 457 SITRLTLEGRSDICDMELRSISRVCESLCYLNIKGCALLSDACIASVIQRCKKLCSLIVC 516
Query: 352 DTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQA 411
TSF SI ALC+ + N + N++ASNLQ LHM+ C G+ LL L+ +
Sbjct: 517 YTSFSENSILALCATISMTNE-----HMDINSVASNLQTLHMSKCEGISETSLLNLITHS 571
Query: 412 RKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCK 471
+K+KSLCL T+++D L F GS+LE LD+S+T IS ALA ++ N LK L ARGCK
Sbjct: 572 QKMKSLCLRDTKVSDSVLCEFPGSTLEALDISNTTISWMALARVISRNPNLKTLKARGCK 631
Query: 472 NLFQQESNGRGIEFSSYPCA-DLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSI 530
NL Q E +GR FS ++F L + LEE+ +GWGFS+ S E L+PA L I
Sbjct: 632 NLLQLEVDGRTDNFSPLVSGQEVFKCLSKGSGLEELEIGWGFSYFSFESLRPAASFLRVI 691
Query: 531 TVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDL 590
+VGLG SLGED L+LLP+TCP+LE +VL+FQ +SDS + ++L SL+ LQ LA+ +C G++
Sbjct: 692 SVGLGASLGEDVLKLLPSTCPLLESIVLHFQEISDSALTSVLTSLKHLQELALSYCFGEI 751
Query: 591 SISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQ 650
S+ SFK +PNLRKL+LERVT WMTN+DL++LTQ+C L ELSLVGC L+SD Q IIS
Sbjct: 752 SLQSFKFSMPNLRKLRLERVTRWMTNDDLLVLTQSCPNLTELSLVGCLHLTSDCQPIISA 811
Query: 651 GWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLV 710
GWPG+ISLHLEECG IT GV SL+ CIALEDL LRHNG GI + F+LDA K PMLRLV
Sbjct: 812 GWPGMISLHLEECGSITENGVASLYGCIALEDLFLRHNGSGIQKSFLLDATLKFPMLRLV 871
Query: 711 SLDLCDASDGNFEIPDYADR-YSLSTVKITKCKSKNRNLCHNWSEARRQSSVHKESLVLV 769
SLD+CDA +G F++P+ + SLS VKI++CKS +L RR + +H+E+LV++
Sbjct: 872 SLDMCDAKEGGFDVPEEKEEGRSLSIVKISRCKSDRCSL------GRRAAPMHRETLVML 925
Query: 770 WNSKNLIRTVVKERL 784
WN + L +T++K+RL
Sbjct: 926 WNGQTLTKTLLKQRL 940
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May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5R3Z8|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 135/333 (40%), Gaps = 68/333 (20%)
Query: 388 LQMLHMACCNGVDGMYLLELMCQARKLKSLCLSG-TQLADKALYNFSG--SSLEMLDVSD 444
L+ L + C GV L R ++ L L+G T++ D Y+ S S L+ LD++
Sbjct: 80 LRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTS 139
Query: 445 TM-ISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKL 503
+ I+ ++L + G L+YLN C + + GIE C L A L R
Sbjct: 140 CVSITNSSLKGISEGCRNLEYLNLSWCDQITKD-----GIEALVRGCRGLKALLLR---- 190
Query: 504 EEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQV- 562
G + L E LK H ELV L Q
Sbjct: 191 -------GCTQLEDEALKHIQNYCH-------------------------ELVSLNLQSC 218
Query: 563 --MSDSIIINILESLRRLQVLAICHC--LGDLSISSFKLPLPNLRKLKLERVTPWMTNND 618
++D ++ I RLQ L + C L D S+++ L P L+ L+ R + +T+
Sbjct: 219 SRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSH-LTDAG 277
Query: 619 LVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYG-------- 670
+L +NC EL ++ L C L++ + + +S P L +L L C IT G
Sbjct: 278 FTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNST 337
Query: 671 -------VTSLFNCIALEDLLLRH--NGPGIPR 694
V L NC+ + D+ L H N G+ R
Sbjct: 338 CGHERLRVLELDNCLLITDVALEHLENCRGLER 370
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Pongo abelii (taxid: 9601) |
| >sp|Q9UKC9|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 135/333 (40%), Gaps = 68/333 (20%)
Query: 388 LQMLHMACCNGVDGMYLLELMCQARKLKSLCLSG-TQLADKALYNFSG--SSLEMLDVSD 444
L+ L + C GV L R ++ L L+G T++ D Y+ S S L+ LD++
Sbjct: 80 LRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTS 139
Query: 445 TM-ISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKL 503
+ I+ ++L + G L+YLN C + + GIE C L A L R
Sbjct: 140 CVSITNSSLKGISEGCRNLEYLNLSWCDQITKD-----GIEALVRGCRGLKALLLR---- 190
Query: 504 EEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQV- 562
G + L E LK H ELV L Q
Sbjct: 191 -------GCTQLEDEALKHIQNYCH-------------------------ELVSLNLQSC 218
Query: 563 --MSDSIIINILESLRRLQVLAICHC--LGDLSISSFKLPLPNLRKLKLERVTPWMTNND 618
++D ++ I RLQ L + C L D S+++ L P L+ L+ R + +T+
Sbjct: 219 SRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSH-LTDAG 277
Query: 619 LVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYG-------- 670
+L +NC EL ++ L C L++ + + +S P L +L L C IT G
Sbjct: 278 FTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNST 337
Query: 671 -------VTSLFNCIALEDLLLRH--NGPGIPR 694
V L NC+ + D+ L H N G+ R
Sbjct: 338 CGHERLRVLELDNCLLITDVALEHLENCRGLER 370
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Binds to hepatitis C virus non-structural protein 5A (NS5A) in a reaction crucial for hepatitis C virus RNA replication. Homo sapiens (taxid: 9606) |
| >sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 135/333 (40%), Gaps = 68/333 (20%)
Query: 388 LQMLHMACCNGVDGMYLLELMCQARKLKSLCLSG-TQLADKALYNFSG--SSLEMLDVSD 444
L+ L + C GV L R ++ L L+G T++ D Y+ S S L+ LD++
Sbjct: 80 LRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTS 139
Query: 445 TM-ISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKL 503
+ ++ ++L + G L+YLN C + ++ GIE C L A L R
Sbjct: 140 CVSVTNSSLKGISEGCRNLEYLNLSWCDQITKE-----GIEALVRGCRGLKALLLR---- 190
Query: 504 EEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQV- 562
G + L E LK H ELV L Q
Sbjct: 191 -------GCTQLEDEALKHIQNHCH-------------------------ELVSLNLQSC 218
Query: 563 --MSDSIIINILESLRRLQVLAICHC--LGDLSISSFKLPLPNLRKLKLERVTPWMTNND 618
++D ++ I RLQ L + C L D S+++ L P L+ L+ R + +T+
Sbjct: 219 SRITDDGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCSH-LTDAG 277
Query: 619 LVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYG-------- 670
+L +NC EL ++ L C L++ + + +S P L +L L C IT G
Sbjct: 278 FTLLARNCHELEKMDLEECVLITDSTLVQLSIHCPKLQALSLSHCELITDEGILHLSSST 337
Query: 671 -------VTSLFNCIALEDLLLRH--NGPGIPR 694
V L NC+ + D L H N G+ R
Sbjct: 338 CGHERLRVLELDNCLLVTDASLEHLENCRGLER 370
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Mus musculus (taxid: 10090) |
| >sp|A6H779|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 122/298 (40%), Gaps = 51/298 (17%)
Query: 388 LQMLHMACCNGVDGMYLLELMCQARKLKSLCLSG-TQLADKALYNFSG--SSLEMLDVSD 444
L+ L + C GV L R ++ L L+G T++ D Y+ S S L+ LD++
Sbjct: 80 LRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTS 139
Query: 445 TM-ISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKL 503
+ I+ ++L + G L+YLN C + + G+E C L A L R
Sbjct: 140 CVSITNSSLKGISEGCRHLEYLNLSWCDQITKD-----GVEALVRGCRGLRALLLR---- 190
Query: 504 EEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVM 563
G + L E LK H ELV L Q
Sbjct: 191 -------GCTQLEDEALKHIQNYCH-------------------------ELVSLNLQSC 218
Query: 564 S---DSIIINILESLRRLQVLAICHC--LGDLSISSFKLPLPNLRKLKLERVTPWMTNND 618
S D ++ + RLQ L + C L D S+++ L P L+ L+ R + +T+
Sbjct: 219 SRVTDDGVVQLCRGCPRLQALCLSGCGSLTDASLTALALNCPRLQILEAARCS-HLTDAG 277
Query: 619 LVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFN 676
+L +NC +L ++ L C L++ + +S P L +L L C IT G+ L N
Sbjct: 278 FTLLARNCHDLEKMDLEECILITDRTLTQLSIHCPKLQALSLSHCELITDDGILHLSN 335
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Bos taurus (taxid: 9913) |
| >sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 96/400 (24%), Positives = 165/400 (41%), Gaps = 61/400 (15%)
Query: 306 DADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVK-LQSIIVCD----TSFGVYSI 360
D L + K+C L +N++ C +TDV + +L+ C K L+SI V T + ++
Sbjct: 180 DQGLAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLSLEAV 239
Query: 361 RALCS--EVPYCNSSALCGKRNFNTLAS--NLQMLHMACCNGVDGMY-LLELMCQARKLK 415
+ C EV Y +S + K L+ L + C + D + + +C + L+
Sbjct: 240 GSHCKLLEVLYLDSEYIHDKGLIAVAQGCHRLKNLKLQCVSVTDVAFAAVGELCTS--LE 297
Query: 416 SLCLSGTQ-LADKALYNFSGSSLEMLDVSDT---MISGAALAYMVHGNSGLKYLNARGCK 471
L L Q DK + S ++ D++ + +S L + HG L+ + GC
Sbjct: 298 RLALYSFQHFTDKGMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCH 357
Query: 472 NLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSIT 531
N+ RGIE C +L+E+ L +
Sbjct: 358 NI-----GTRGIEAIGKSCP----------RLKELALLY--------------------- 381
Query: 532 VGLGGSLGEDALRLLPTTCPMLELVVLY-FQVMSDSIIINILESLRRLQVLAI--CHCLG 588
+G AL+ + C LE++ L + D + +I + R L+ L I C+ +G
Sbjct: 382 ---CQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRCYEIG 438
Query: 589 DLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLII 648
+ I S +L +L L R + N L+ + + CS L +L++ GC +S I
Sbjct: 439 NKGIISIGKHCKSLTELSL-RFCDKVGNKALIAIGKGCS-LQQLNVSGCNQISDAGITAI 496
Query: 649 SQGWPGLISLHLEECGDITAYGVTSLF-NCIALEDLLLRH 687
++G P L L + +I + L C L+DL+L H
Sbjct: 497 ARGCPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVLSH 536
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 784 | ||||||
| 297740092 | 1010 | unnamed protein product [Vitis vinifera] | 0.997 | 0.774 | 0.600 | 0.0 | |
| 225440932 | 980 | PREDICTED: BTB/POZ domain-containing pro | 0.997 | 0.797 | 0.600 | 0.0 | |
| 356503794 | 982 | PREDICTED: BTB/POZ domain-containing pro | 0.985 | 0.787 | 0.550 | 0.0 | |
| 357510981 | 1039 | LRR and BTB/POZ domain-containing protei | 0.985 | 0.743 | 0.521 | 0.0 | |
| 145360678 | 898 | ubiquitin-protein ligase [Arabidopsis th | 0.954 | 0.832 | 0.488 | 0.0 | |
| 124007178 | 940 | RecName: Full=BTB/POZ domain-containing | 0.954 | 0.795 | 0.488 | 0.0 | |
| 110740942 | 931 | hypothetical protein [Arabidopsis thalia | 0.954 | 0.803 | 0.488 | 0.0 | |
| 297823449 | 941 | predicted protein [Arabidopsis lyrata su | 0.954 | 0.794 | 0.485 | 0.0 | |
| 147800622 | 871 | hypothetical protein VITISV_009362 [Viti | 0.822 | 0.740 | 0.576 | 0.0 | |
| 357131799 | 952 | PREDICTED: BTB/POZ domain-containing pro | 0.963 | 0.793 | 0.417 | 1e-147 |
| >gi|297740092|emb|CBI30274.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/803 (60%), Positives = 599/803 (74%), Gaps = 21/803 (2%)
Query: 1 MWAMSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLT 60
MWAMS S+ N+PY++L+ C +HP LTVDSE HLSDALL+W+ AN E S+ +EDD T
Sbjct: 210 MWAMSCNSYGNLPYNMLIACTRHPELTVDSEKHLSDALLVWLAANPELSECSSCLEDDCT 269
Query: 61 -ILKEIRISILPLWFAAGKRRSSYFSKLSDESVNSILRLVKVHPAC-LIKVLEDVELKHL 118
+LK+IR+++LPLWF+AGK+ YFSKL+D+S+N+IL LVK HP+ L+ L D +L L
Sbjct: 270 DVLKQIRVNLLPLWFSAGKKWCCYFSKLADKSINAILSLVK-HPSTGLVIDLGDEDLLQL 328
Query: 119 RIRLTEYSEKVNLSGCPQMTSAILLLSVLDSLHCLDPTSRKIFEC-------LDKDQSRI 171
RIRLT+Y++KV++SGCPQ+T +LLLSV+ + +D RK E LD+ Q I
Sbjct: 329 RIRLTKYTKKVDISGCPQITVELLLLSVIPCSYIMDSKLRKSIEQSLINLKHLDRKQYAI 388
Query: 172 PLGFLPIFSFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLV 231
G LPI +FEAVQ+V+I KC LH E+A+ECF KSFP+LRT++AAY L+ K +L +LV
Sbjct: 389 SPGLLPILTFEAVQDVDISKCSRLHFEAAIECFCKSFPALRTLRAAYLLNIKMTSLRQLV 448
Query: 232 QKCPMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSS-LYATSVYHSGPSP 290
KC +L EVDLTVD SPVIP +VS++SSS + P + + ++ L ATS SG
Sbjct: 449 -KCSLLSEVDLTVDVSPVIPMQVSIISSSQTITPKISTTFVQSENYILDATSFSLSGSLL 507
Query: 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIV 350
S IT LTLEGR+D+ D+DL+ IS++CVSL Y+N+K C SVTD +S LIRRC+KLQSI+V
Sbjct: 508 SNITNLTLEGRTDVSDSDLQDISEFCVSLCYLNLKACTSVTDTGMSILIRRCIKLQSILV 567
Query: 351 CDTSFGVYSIRALCSEVPYCNSSALC--GKRNFNTLASNLQMLHMACCNGVDGMYLLELM 408
CDTSFG SI ALC +P +S G + N++A LQ LHM C GVD LLE++
Sbjct: 568 CDTSFGRNSILALCCSLPNSGNSVAVDFGNKQQNSVALKLQTLHMGGCKGVDETSLLEVL 627
Query: 409 CQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNAR 468
Q + L+SLCL T L D AL +FSGSSLEMLDV +TM+SGAALAY+V GN GLK L AR
Sbjct: 628 SQVQVLRSLCLRETHLVDNALCSFSGSSLEMLDVDNTMVSGAALAYVVRGNPGLKCLKAR 687
Query: 469 GCKNLFQQESNGRGIEFSSYP--CADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKL 526
GCKNLFQQ SNG+G E SS+ C +L+ EL +T KLEE GWGFS SLE L PAI
Sbjct: 688 GCKNLFQQGSNGKGEECSSFSHSCKELYLELAKTCKLEEFSFGWGFSHFSLEALGPAITS 747
Query: 527 LHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC 586
L I +GLG SL DAL LLPTTCP LE V+LYFQV++DSI+INI++SLR LQVL +C+C
Sbjct: 748 LKKINMGLGASLSHDALTLLPTTCPFLESVILYFQVITDSIMINIMQSLRYLQVLVLCYC 807
Query: 587 LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQL 646
LGD+S SFK +PNLRKL+LERVTPWMTN++L ILTQNC LVELSL+GC LL+SDSQ
Sbjct: 808 LGDISSLSFKFSMPNLRKLRLERVTPWMTNDELAILTQNCVNLVELSLLGCRLLNSDSQQ 867
Query: 647 IISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPM 706
IIS GWPGL S+HLEECG++TA GV SLF+C ALEDLLLRHNGPGI R+FILDAASKMPM
Sbjct: 868 IISCGWPGLTSIHLEECGEVTADGVISLFDCKALEDLLLRHNGPGIQRNFILDAASKMPM 927
Query: 707 LRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKSKNRNLCHNWSEARR-----QSSV 761
LR VSLDLCDAS+G+F++P+YADRYSLS VKI +CK + L +A R + V
Sbjct: 928 LRKVSLDLCDASEGDFDLPNYADRYSLSIVKIARCKFRKCTLELQILDATRRPVHMERPV 987
Query: 762 HKESLVLVWNSKNLIRTVVKERL 784
HKE+LVLVW+SKNL RTVVKER+
Sbjct: 988 HKETLVLVWSSKNLTRTVVKERI 1010
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440932|ref|XP_002277002.1| PREDICTED: BTB/POZ domain-containing protein FBL11-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/803 (60%), Positives = 599/803 (74%), Gaps = 21/803 (2%)
Query: 1 MWAMSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLT 60
MWAMS S+ N+PY++L+ C +HP LTVDSE HLSDALL+W+ AN E S+ +EDD T
Sbjct: 180 MWAMSCNSYGNLPYNMLIACTRHPELTVDSEKHLSDALLVWLAANPELSECSSCLEDDCT 239
Query: 61 -ILKEIRISILPLWFAAGKRRSSYFSKLSDESVNSILRLVKVHPAC-LIKVLEDVELKHL 118
+LK+IR+++LPLWF+AGK+ YFSKL+D+S+N+IL LVK HP+ L+ L D +L L
Sbjct: 240 DVLKQIRVNLLPLWFSAGKKWCCYFSKLADKSINAILSLVK-HPSTGLVIDLGDEDLLQL 298
Query: 119 RIRLTEYSEKVNLSGCPQMTSAILLLSVLDSLHCLDPTSRKIFEC-------LDKDQSRI 171
RIRLT+Y++KV++SGCPQ+T +LLLSV+ + +D RK E LD+ Q I
Sbjct: 299 RIRLTKYTKKVDISGCPQITVELLLLSVIPCSYIMDSKLRKSIEQSLINLKHLDRKQYAI 358
Query: 172 PLGFLPIFSFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLV 231
G LPI +FEAVQ+V+I KC LH E+A+ECF KSFP+LRT++AAY L+ K +L +LV
Sbjct: 359 SPGLLPILTFEAVQDVDISKCSRLHFEAAIECFCKSFPALRTLRAAYLLNIKMTSLRQLV 418
Query: 232 QKCPMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSS-LYATSVYHSGPSP 290
KC +L EVDLTVD SPVIP +VS++SSS + P + + ++ L ATS SG
Sbjct: 419 -KCSLLSEVDLTVDVSPVIPMQVSIISSSQTITPKISTTFVQSENYILDATSFSLSGSLL 477
Query: 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIV 350
S IT LTLEGR+D+ D+DL+ IS++CVSL Y+N+K C SVTD +S LIRRC+KLQSI+V
Sbjct: 478 SNITNLTLEGRTDVSDSDLQDISEFCVSLCYLNLKACTSVTDTGMSILIRRCIKLQSILV 537
Query: 351 CDTSFGVYSIRALCSEVPYCNSSALC--GKRNFNTLASNLQMLHMACCNGVDGMYLLELM 408
CDTSFG SI ALC +P +S G + N++A LQ LHM C GVD LLE++
Sbjct: 538 CDTSFGRNSILALCCSLPNSGNSVAVDFGNKQQNSVALKLQTLHMGGCKGVDETSLLEVL 597
Query: 409 CQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNAR 468
Q + L+SLCL T L D AL +FSGSSLEMLDV +TM+SGAALAY+V GN GLK L AR
Sbjct: 598 SQVQVLRSLCLRETHLVDNALCSFSGSSLEMLDVDNTMVSGAALAYVVRGNPGLKCLKAR 657
Query: 469 GCKNLFQQESNGRGIEFSSYP--CADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKL 526
GCKNLFQQ SNG+G E SS+ C +L+ EL +T KLEE GWGFS SLE L PAI
Sbjct: 658 GCKNLFQQGSNGKGEECSSFSHSCKELYLELAKTCKLEEFSFGWGFSHFSLEALGPAITS 717
Query: 527 LHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC 586
L I +GLG SL DAL LLPTTCP LE V+LYFQV++DSI+INI++SLR LQVL +C+C
Sbjct: 718 LKKINMGLGASLSHDALTLLPTTCPFLESVILYFQVITDSIMINIMQSLRYLQVLVLCYC 777
Query: 587 LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQL 646
LGD+S SFK +PNLRKL+LERVTPWMTN++L ILTQNC LVELSL+GC LL+SDSQ
Sbjct: 778 LGDISSLSFKFSMPNLRKLRLERVTPWMTNDELAILTQNCVNLVELSLLGCRLLNSDSQQ 837
Query: 647 IISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPM 706
IIS GWPGL S+HLEECG++TA GV SLF+C ALEDLLLRHNGPGI R+FILDAASKMPM
Sbjct: 838 IISCGWPGLTSIHLEECGEVTADGVISLFDCKALEDLLLRHNGPGIQRNFILDAASKMPM 897
Query: 707 LRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKSKNRNLCHNWSEARR-----QSSV 761
LR VSLDLCDAS+G+F++P+YADRYSLS VKI +CK + L +A R + V
Sbjct: 898 LRKVSLDLCDASEGDFDLPNYADRYSLSIVKIARCKFRKCTLELQILDATRRPVHMERPV 957
Query: 762 HKESLVLVWNSKNLIRTVVKERL 784
HKE+LVLVW+SKNL RTVVKER+
Sbjct: 958 HKETLVLVWSSKNLTRTVVKERI 980
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503794|ref|XP_003520688.1| PREDICTED: BTB/POZ domain-containing protein FBL11-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/808 (55%), Positives = 582/808 (72%), Gaps = 35/808 (4%)
Query: 1 MWAMSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDD-L 59
MWA KSF +PY LLL VKHP LTVDSE+HLSDALL+W+++N LE ++ E++
Sbjct: 186 MWAKHSKSFGKLPYDLLLSLVKHPHLTVDSELHLSDALLLWLESNTENLERPSKSEENCY 245
Query: 60 TILKEIRISILPLWFAAGKRRSSYFSKLSDESVNSILRLVKVHPACLIKVLEDVELKHLR 119
+LK+IR+ +LPLWFA GKR S YF +L++ES++SI RL+ + P I E +L HLR
Sbjct: 246 EVLKQIRVGLLPLWFALGKRNSFYFRQLAEESLDSIFRLLNIAPMGSIDTFEYSDLHHLR 305
Query: 120 IRLTEYSEKVNLSGCPQMTSAILLLSVLDSLHCLDPTSRKIFECLD-------KDQSRIP 172
IRLTEYS+KV+LSGCPQ+ S +LLLS++ + DP + I + +D+S P
Sbjct: 306 IRLTEYSKKVDLSGCPQIASTVLLLSLIPQSYLTDPMEKNIIKQFFINCGHPIRDKSVFP 365
Query: 173 LGFLPIFSFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQ 232
L F+FEAVQEV+I KC L +E AV+CF K FPSLR +KAA+ L+ T++ +L++
Sbjct: 366 LELSETFTFEAVQEVDISKCRNLIIEHAVDCFCKFFPSLRILKAAHLLNIGTISFLQLLE 425
Query: 233 KCPMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSVYHS-GPSPS 291
KC M+CE+DLTVD +P+IP V+V SSS A++PLV KS + + Y+ GP S
Sbjct: 426 KCTMVCEIDLTVDITPLIPA-VTVASSSRAMIPLVPEKSSSVNHIAVQIMPYNEFGPPLS 484
Query: 292 KITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVC 351
+TKLT EGR+D+ D L++ISK CVSL ++NIKGC+SVTD+ IS+LI C KL SI+VC
Sbjct: 485 NVTKLTFEGRTDVSDLGLQYISKLCVSLRHLNIKGCISVTDIGISDLISTCKKLNSIVVC 544
Query: 352 DTSFGVYSIRALCSEVPYCNSSALCGKRNFNTL----------ASNLQMLHMACCNGVDG 401
DT FG+YS++ALCS A+ G NF +L SN +MLHM C G+
Sbjct: 545 DTLFGIYSVQALCS--------AISGSGNFPSLHSRDKRLKSVVSNFEMLHMGGCRGISE 596
Query: 402 MYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSG 461
LLELM QA+ LKSLCL T L D+ALYNF GSSLEMLDVSDT ISGAALA+++HGN
Sbjct: 597 SSLLELMSQAQVLKSLCLRWTDLVDQALYNFVGSSLEMLDVSDTKISGAALAHIIHGNPS 656
Query: 462 LKYLNARGCKNLFQQESNGRGIEFSSYPC--ADLFAELGRTRKLEEIVLGWGFSFLSLEV 519
LK L ARGC+NLF +N SS+P L AELG+ +LEEI GWGFS SL
Sbjct: 657 LKCLRARGCQNLFPG-NNCIEKRKSSFPSLHEKLHAELGKMCRLEEIEFGWGFSSFSLSA 715
Query: 520 LKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQ 579
L+P + L +I +GLGG+LGEDAL+ LP CP+LE ++L+FQV+SD I++N + SL+ LQ
Sbjct: 716 LEPLLMSLKTINIGLGGTLGEDALKQLPAICPLLETIILHFQVISDMIVMNFVTSLKYLQ 775
Query: 580 VLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTL 639
VLA+C+C GD+S+SSFK P+ NLRKL+LER+TPWMTN+DLV+L QNC L+ELSL+GC L
Sbjct: 776 VLALCYCFGDISMSSFKFPMQNLRKLRLERITPWMTNDDLVVLAQNCRNLLELSLLGCPL 835
Query: 640 LSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILD 699
L DS II+ GWPGL+S+HLE+CG++TA G ++L +C ALED+LLRHNGPG+PR+FI
Sbjct: 836 LDPDSLQIITCGWPGLVSIHLEDCGEVTANGASALLDCKALEDILLRHNGPGLPRNFICY 895
Query: 700 AASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSKN--RNLCHNWSEAR 756
AAS+MP+LR +SLD+CDAS+G+F+IP+ YAD+Y LST+KI +CKS+ NL
Sbjct: 896 AASEMPLLRKLSLDICDASEGDFDIPNQYADKYFLSTLKIARCKSQRCAFNLPAPAPGVH 955
Query: 757 RQSSVHKESLVLVWNSKNLIRTVVKERL 784
R+ SVH E+LVLVWNS++LIRTVVKERL
Sbjct: 956 RR-SVHVETLVLVWNSRDLIRTVVKERL 982
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357510981|ref|XP_003625779.1| LRR and BTB/POZ domain-containing protein FBL11 [Medicago truncatula] gi|355500794|gb|AES81997.1| LRR and BTB/POZ domain-containing protein FBL11 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/867 (52%), Positives = 581/867 (67%), Gaps = 94/867 (10%)
Query: 1 MWAMSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLT 60
MWA + F +PY+LLL VKHP LTVDSEMHLSDALL+W+++N+ LE + ED+
Sbjct: 184 MWAKKNNFFREVPYNLLLSSVKHPHLTVDSEMHLSDALLLWLESNMENLERRSEAEDNYN 243
Query: 61 -ILKE-----------------------------IRISILPLWFAAGKRRSSYFSKLSDE 90
ILK+ I + +LPLWFAAGKR S YF +L++E
Sbjct: 244 GILKQVSLYVSLLILSYHKTLVEHALCCHMWLDMIHVELLPLWFAAGKRNSFYFRQLAEE 303
Query: 91 SVNSILRLVKVHPACLIKVLEDVELKHLRIRLTEYSEKVNLSGCPQMTSAILLLSVLDSL 150
S+ SI R + + P + + +L+HLRIR+TEYS+K++LS CPQ+TSAILLLS++
Sbjct: 304 SLGSIFRALNILPIGSLDISGYSDLQHLRIRVTEYSKKIDLSNCPQITSAILLLSLIPES 363
Query: 151 HCLDPTSRKIFECLD-------KDQSRIPLGFLPIFSFEAVQEVNICKCHALHLESAVEC 203
+ DP RKI E +++ P L F FEAVQEV+I KC L +E AV C
Sbjct: 364 YLTDPMQRKIIEQFFNNSGHPIQEKYEFPQKLLETFIFEAVQEVDISKCRRLLIEHAVNC 423
Query: 204 FSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSSSSAL 263
FS+SFPSLR +KAAY L+ +T +L++KC ++ EVDLTVD +P+IP V+++SSS +
Sbjct: 424 FSQSFPSLRILKAAYLLNIRTTGFLQLLEKCSLVNEVDLTVDVTPLIPASVTILSSSPVV 483
Query: 264 MPLVLNKSIAGDSSLYATSVYH-SGPSPSKITKLTLEGRSD------------------- 303
+PLV K+ + T +H S P S +TKL+LEGR+D
Sbjct: 484 IPLVPEKTPSLKYKAVETMSFHESRPQISYVTKLSLEGRTDVSGRCFHGERIHAQSKHFC 543
Query: 304 ------------------MCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKL 345
M D L++ISK+CVSL ++NIKGC+ VTD+ IS+LI RC KL
Sbjct: 544 FILFIFFSANNHNFFILSMADLSLQYISKFCVSLCHLNIKGCICVTDIGISDLIHRCNKL 603
Query: 346 QSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNF---NTLASNLQMLHMACCNGVDGM 402
SI+VCDTSFG+ S++ALC SA+ NF +++ SNLQ LHM C G+ +
Sbjct: 604 NSIVVCDTSFGINSVQALC--------SAISDGGNFPSLHSVVSNLQALHMGGCIGISEL 655
Query: 403 YLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGL 462
L ELM Q + LK+LCL GT L D+AL+NF GSSLEMLDVSDT IS AAL++++HGN L
Sbjct: 656 SLQELMSQTQVLKNLCLRGTYLVDQALFNFKGSSLEMLDVSDTKISEAALSFVIHGNPSL 715
Query: 463 KYLNARGCKNLFQQESN--GRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVL 520
K L ARGCKNL + +S+ R FSS +L AELG+ +LEEI GWGFS SL L
Sbjct: 716 KSLKARGCKNLLKGDSSIEKREPSFSSLH-EELHAELGKKSRLEEIEFGWGFSSFSLSAL 774
Query: 521 KPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQV 580
+PA+ L +I VGLGG LGEDALR LP CP+LE ++L+FQVMSD I+ ++ SL LQV
Sbjct: 775 EPALTSLKTINVGLGGMLGEDALRQLPAICPLLETIILHFQVMSDIIVRKLVTSLMNLQV 834
Query: 581 LAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLL 640
L +C+C GD+SISSFKLP+ NLRKL+LERVTPWMTN+DLVIL+QNC LVELSL+GC LL
Sbjct: 835 LVLCYCFGDISISSFKLPMQNLRKLRLERVTPWMTNDDLVILSQNCRNLVELSLLGCPLL 894
Query: 641 SSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDA 700
+SDSQ IIS+ WPGL+S+HLEECG+ITA GV+ L NC ALEDLLLRHNG G+ R+FIL A
Sbjct: 895 NSDSQQIISRAWPGLVSMHLEECGEITANGVSVLLNCRALEDLLLRHNGLGLQRNFILHA 954
Query: 701 ASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKSKNRNLCHNWS---EARR 757
AS++P+LR +SLD+CDA +G F+IP+YADRYSLST+KI KCKS+ N S R
Sbjct: 955 ASELPLLRKLSLDICDAIEGGFDIPNYADRYSLSTLKIAKCKSQ--RCAFNVSVPPPGSR 1012
Query: 758 QSSVHKESLVLVWNSKNLIRTVVKERL 784
+ SVH E+LVLVWN +NL RTVVKERL
Sbjct: 1013 RRSVHVETLVLVWNCENLTRTVVKERL 1039
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145360678|ref|NP_565845.2| ubiquitin-protein ligase [Arabidopsis thaliana] gi|330254151|gb|AEC09245.1| ubiquitin-protein ligase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/795 (48%), Positives = 526/795 (66%), Gaps = 47/795 (5%)
Query: 1 MWAMSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDAN--IAQLESSNRVEDD 58
M S K F N+PY LL+ CVKHP LTV SEM L D LLIW+DA ++ L S++ ++
Sbjct: 140 MLVKSDKYFGNVPYELLMWCVKHPHLTVHSEMDLVDGLLIWLDAGGRLSDLPESSQ-DNT 198
Query: 59 LTILKEIRISILPLWFAAGKRRSSYFSKLSDESVNSILRLVKVHPACLIKVLEDVELKHL 118
+ +++++R S+LPLWF AG+ +S FSK +D+S+ + +L+K+ CL+ L D +
Sbjct: 199 INLMEQVRFSLLPLWFIAGRSKSHGFSKFADQSIELVTKLMKMPSTCLVDSLTDGPPTDV 258
Query: 119 RIRLTEYSEKVNLSGCPQMTSAILLLSVLDSLHCLDPTSRKIFECL-------DKDQSRI 171
R+RLTEYSE ++LSGCPQ+ A LLLS+L + + + RK E ++ Q +I
Sbjct: 259 RVRLTEYSEILDLSGCPQLNEASLLLSILPNSYFANLRWRKSLESFLKNPDDDERHQEQI 318
Query: 172 PLGFLPIFSFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLV 231
LPI SFE+V+E++I KC L + ++CFSKSFPSLR ++AAY L+ K L +L+
Sbjct: 319 SHRTLPILSFESVKEIDISKCQRLDYKVVIKCFSKSFPSLRKLRAAYLLNIKVSTLLELL 378
Query: 232 QKCPMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSPS 291
L EVDLTVD SP+IP + SV S L S
Sbjct: 379 LNFRELTEVDLTVDVSPIIPVQASVFYSGQGHCLL------------------------S 414
Query: 292 KITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVC 351
IT+LTLEGRSD+CD +L IS+ C SL Y+NIKGC ++D CI+++I+RC KL S+IVC
Sbjct: 415 SITRLTLEGRSDICDMELRSISRVCESLCYLNIKGCALLSDACIASVIQRCKKLCSLIVC 474
Query: 352 DTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQA 411
TSF SI ALC+ + N + N++ASNLQ LHM+ C G+ LL L+ +
Sbjct: 475 YTSFSENSILALCATISMTNE-----HMDINSVASNLQTLHMSKCEGISETSLLNLITHS 529
Query: 412 RKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCK 471
+K+KSLCL T+++D L F GS+LE LD+S+T IS ALA ++ N LK L ARGCK
Sbjct: 530 QKMKSLCLRDTKVSDSVLCEFPGSTLEALDISNTTISWMALARVISRNPNLKTLKARGCK 589
Query: 472 NLFQQESNGRGIEFSSYPCA-DLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSI 530
NL Q E +GR FS ++F L + LEE+ +GWGFS+ S E L+PA L I
Sbjct: 590 NLLQLEVDGRTDNFSPLVSGQEVFKCLSKGSGLEELEIGWGFSYFSFESLRPAASFLRVI 649
Query: 531 TVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDL 590
+VGLG SLGED L+LLP+TCP+LE +VL+FQ +SDS + ++L SL+ LQ LA+ +C G++
Sbjct: 650 SVGLGASLGEDVLKLLPSTCPLLESIVLHFQEISDSALTSVLTSLKHLQELALSYCFGEI 709
Query: 591 SISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQ 650
S+ SFK +PNLRKL+LERVT WMTN+DL++LTQ+C L ELSLVGC L+SD Q IIS
Sbjct: 710 SLQSFKFSMPNLRKLRLERVTRWMTNDDLLVLTQSCPNLTELSLVGCLHLTSDCQPIISA 769
Query: 651 GWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLV 710
GWPG+ISLHLEECG IT GV SL+ CIALEDL LRHNG GI + F+LDA K PMLRLV
Sbjct: 770 GWPGMISLHLEECGSITENGVASLYGCIALEDLFLRHNGSGIQKSFLLDATLKFPMLRLV 829
Query: 711 SLDLCDASDGNFEIPDYADR-YSLSTVKITKCKSKNRNLCHNWSEARRQSSVHKESLVLV 769
SLD+CDA +G F++P+ + SLS VKI++CKS +L RR + +H+E+LV++
Sbjct: 830 SLDMCDAKEGGFDVPEEKEEGRSLSIVKISRCKSDRCSL------GRRAAPMHRETLVML 883
Query: 770 WNSKNLIRTVVKERL 784
WN + L +T++K+RL
Sbjct: 884 WNGQTLTKTLLKQRL 898
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|124007178|sp|Q8S8F2.2|FBL11_ARATH RecName: Full=BTB/POZ domain-containing protein FBL11 | Back alignment and taxonomy information |
|---|
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/795 (48%), Positives = 526/795 (66%), Gaps = 47/795 (5%)
Query: 1 MWAMSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDAN--IAQLESSNRVEDD 58
M S K F N+PY LL+ CVKHP LTV SEM L D LLIW+DA ++ L S++ ++
Sbjct: 182 MLVKSDKYFGNVPYELLMWCVKHPHLTVHSEMDLVDGLLIWLDAGGRLSDLPESSQ-DNT 240
Query: 59 LTILKEIRISILPLWFAAGKRRSSYFSKLSDESVNSILRLVKVHPACLIKVLEDVELKHL 118
+ +++++R S+LPLWF AG+ +S FSK +D+S+ + +L+K+ CL+ L D +
Sbjct: 241 INLMEQVRFSLLPLWFIAGRSKSHGFSKFADQSIELVTKLMKMPSTCLVDSLTDGPPTDV 300
Query: 119 RIRLTEYSEKVNLSGCPQMTSAILLLSVLDSLHCLDPTSRKIFECL-------DKDQSRI 171
R+RLTEYSE ++LSGCPQ+ A LLLS+L + + + RK E ++ Q +I
Sbjct: 301 RVRLTEYSEILDLSGCPQLNEASLLLSILPNSYFANLRWRKSLESFLKNPDDDERHQEQI 360
Query: 172 PLGFLPIFSFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLV 231
LPI SFE+V+E++I KC L + ++CFSKSFPSLR ++AAY L+ K L +L+
Sbjct: 361 SHRTLPILSFESVKEIDISKCQRLDYKVVIKCFSKSFPSLRKLRAAYLLNIKVSTLLELL 420
Query: 232 QKCPMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSPS 291
L EVDLTVD SP+IP + SV S L S
Sbjct: 421 LNFRELTEVDLTVDVSPIIPVQASVFYSGQGHCLL------------------------S 456
Query: 292 KITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVC 351
IT+LTLEGRSD+CD +L IS+ C SL Y+NIKGC ++D CI+++I+RC KL S+IVC
Sbjct: 457 SITRLTLEGRSDICDMELRSISRVCESLCYLNIKGCALLSDACIASVIQRCKKLCSLIVC 516
Query: 352 DTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQA 411
TSF SI ALC+ + N + N++ASNLQ LHM+ C G+ LL L+ +
Sbjct: 517 YTSFSENSILALCATISMTNE-----HMDINSVASNLQTLHMSKCEGISETSLLNLITHS 571
Query: 412 RKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCK 471
+K+KSLCL T+++D L F GS+LE LD+S+T IS ALA ++ N LK L ARGCK
Sbjct: 572 QKMKSLCLRDTKVSDSVLCEFPGSTLEALDISNTTISWMALARVISRNPNLKTLKARGCK 631
Query: 472 NLFQQESNGRGIEFSSYPCA-DLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSI 530
NL Q E +GR FS ++F L + LEE+ +GWGFS+ S E L+PA L I
Sbjct: 632 NLLQLEVDGRTDNFSPLVSGQEVFKCLSKGSGLEELEIGWGFSYFSFESLRPAASFLRVI 691
Query: 531 TVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDL 590
+VGLG SLGED L+LLP+TCP+LE +VL+FQ +SDS + ++L SL+ LQ LA+ +C G++
Sbjct: 692 SVGLGASLGEDVLKLLPSTCPLLESIVLHFQEISDSALTSVLTSLKHLQELALSYCFGEI 751
Query: 591 SISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQ 650
S+ SFK +PNLRKL+LERVT WMTN+DL++LTQ+C L ELSLVGC L+SD Q IIS
Sbjct: 752 SLQSFKFSMPNLRKLRLERVTRWMTNDDLLVLTQSCPNLTELSLVGCLHLTSDCQPIISA 811
Query: 651 GWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLV 710
GWPG+ISLHLEECG IT GV SL+ CIALEDL LRHNG GI + F+LDA K PMLRLV
Sbjct: 812 GWPGMISLHLEECGSITENGVASLYGCIALEDLFLRHNGSGIQKSFLLDATLKFPMLRLV 871
Query: 711 SLDLCDASDGNFEIPDYADR-YSLSTVKITKCKSKNRNLCHNWSEARRQSSVHKESLVLV 769
SLD+CDA +G F++P+ + SLS VKI++CKS +L RR + +H+E+LV++
Sbjct: 872 SLDMCDAKEGGFDVPEEKEEGRSLSIVKISRCKSDRCSL------GRRAAPMHRETLVML 925
Query: 770 WNSKNLIRTVVKERL 784
WN + L +T++K+RL
Sbjct: 926 WNGQTLTKTLLKQRL 940
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110740942|dbj|BAE98566.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/795 (48%), Positives = 526/795 (66%), Gaps = 47/795 (5%)
Query: 1 MWAMSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDAN--IAQLESSNRVEDD 58
M S K F N+PY LL+ CVKHP LTV SEM L D LLIW+DA ++ L S++ ++
Sbjct: 173 MLVKSDKYFGNVPYELLMWCVKHPHLTVHSEMDLVDGLLIWLDAGGRLSDLPESSQ-DNT 231
Query: 59 LTILKEIRISILPLWFAAGKRRSSYFSKLSDESVNSILRLVKVHPACLIKVLEDVELKHL 118
+ +++++R S+LPLWF AG+ +S FSK +D+S+ + +L+K+ CL+ L D +
Sbjct: 232 INLMEQVRFSLLPLWFIAGRSKSHGFSKFADQSIELVTKLMKMPSTCLVDSLTDGPPTDV 291
Query: 119 RIRLTEYSEKVNLSGCPQMTSAILLLSVLDSLHCLDPTSRKIFECL-------DKDQSRI 171
R+RLTEYSE ++LSGCPQ+ A LLLS+L + + + RK E ++ Q +I
Sbjct: 292 RVRLTEYSEILDLSGCPQLNEASLLLSILPNSYFANLRWRKSLESFLKNPDDDERHQEQI 351
Query: 172 PLGFLPIFSFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLV 231
LPI SFE+V+E++I KC L + ++CFSKSFPSLR ++AAY L+ K L +L+
Sbjct: 352 SHRTLPILSFESVKEIDISKCQRLDYKVVIKCFSKSFPSLRKLRAAYLLNIKVSTLLELL 411
Query: 232 QKCPMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSPS 291
L EVDLTVD SP+IP + SV S L S
Sbjct: 412 LNFRELTEVDLTVDVSPIIPVQASVFYSGQGHCLL------------------------S 447
Query: 292 KITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVC 351
IT+LTLEGRSD+CD +L IS+ C SL Y+NIKGC ++D CI+++I+RC KL S+IVC
Sbjct: 448 SITRLTLEGRSDICDMELRSISRVCESLCYLNIKGCALLSDACIASVIQRCKKLCSLIVC 507
Query: 352 DTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQA 411
TSF SI ALC+ + N + N++ASNLQ LHM+ C G+ LL L+ +
Sbjct: 508 YTSFSENSILALCATISMTNE-----HMDINSVASNLQTLHMSKCEGISETSLLNLITHS 562
Query: 412 RKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCK 471
+K+KSLCL T+++D L F GS+LE LD+S+T IS ALA ++ N LK L ARGCK
Sbjct: 563 QKMKSLCLRDTKVSDSVLCEFPGSTLEALDISNTTISWMALARVISRNPNLKTLKARGCK 622
Query: 472 NLFQQESNGRGIEFSSYPCA-DLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSI 530
NL Q E +GR FS ++F L + LEE+ +GWGFS+ S E L+PA L I
Sbjct: 623 NLLQLEVDGRTDNFSPLVSGQEVFKCLSKGSGLEELEIGWGFSYFSFESLRPAASFLRVI 682
Query: 531 TVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDL 590
+VGLG SLGED L+LLP+TCP+LE +VL+FQ +SDS + ++L SL+ LQ LA+ +C G++
Sbjct: 683 SVGLGASLGEDVLKLLPSTCPLLESIVLHFQEISDSALTSVLTSLKHLQELALSYCFGEI 742
Query: 591 SISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQ 650
S+ SFK +PNLRKL+LERVT WMTN+DL++LTQ+C L ELSLVGC L+SD Q IIS
Sbjct: 743 SLQSFKFSMPNLRKLRLERVTRWMTNDDLLVLTQSCPNLTELSLVGCLHLTSDCQPIISA 802
Query: 651 GWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLV 710
GWPG+ISLHLEECG IT GV SL+ CIALEDL LRHNG GI + F+LDA K PMLRLV
Sbjct: 803 GWPGMISLHLEECGSITENGVASLYGCIALEDLFLRHNGSGIQKSFLLDATLKFPMLRLV 862
Query: 711 SLDLCDASDGNFEIPDYADR-YSLSTVKITKCKSKNRNLCHNWSEARRQSSVHKESLVLV 769
SLD+CDA +G F++P+ + SLS VKI++CKS +L RR + +H+E+LV++
Sbjct: 863 SLDMCDAKEGGFDVPEEKEEGRSLSIVKISRCKSDRCSL------GRRAAPMHRETLVML 916
Query: 770 WNSKNLIRTVVKERL 784
WN + L +T++K+RL
Sbjct: 917 WNGQTLTKTLLKQRL 931
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823449|ref|XP_002879607.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297325446|gb|EFH55866.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/795 (48%), Positives = 528/795 (66%), Gaps = 47/795 (5%)
Query: 1 MWAMSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDD-L 59
M S K F N+PY LL+ C+KH LTV SEMHL+DALL+W+D + S+ +D+ +
Sbjct: 183 MLVKSDKYFGNVPYELLMCCIKHSHLTVHSEMHLADALLVWLDTGRRMSDLSDSSQDNTI 242
Query: 60 TILKEIRISILPLWFAAGKRRSSYFSKLSDESVNSILRLVKVHPACLIKVLEDVELKHLR 119
+++++R S+LPLWF AG+ +S FSK +D+S+ + +L+K+ CL+ L D LR
Sbjct: 243 NLMEQVRFSLLPLWFIAGRSKSHGFSKFADQSIELVTKLMKMPSTCLVDSLTDGPPTDLR 302
Query: 120 IRLTEYSEKVNLSGCPQMTSAILLLSVLDSLHCLDPTSRKIFECL-------DKDQSRIP 172
+RLTEYSE ++LSGCPQ+ A LLLS+L + + + RK + ++ Q ++
Sbjct: 303 VRLTEYSEILDLSGCPQLNEASLLLSILPNSYFANLRWRKSLKSFLKNPDDDERHQEQLS 362
Query: 173 LGFLPIFSFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQ 232
LPI SFE+V+E++I KC L ++ ++CFSKSFPSLR ++AAY L+ K + +L+Q
Sbjct: 363 HRTLPILSFESVKEIDISKCQRLDYKAVIKCFSKSFPSLRKLRAAYLLNIKVSTMLELLQ 422
Query: 233 KCPMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSPSK 292
L EVDLTVD +P+IP + SV S G SL S
Sbjct: 423 NFRELTEVDLTVDFAPIIPVQASVFYSGQ------------GHCSL------------SN 458
Query: 293 ITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCD 352
IT+LTLEGRSD+CD +L IS+ C SL Y+NIKGC ++D CI+ +I+RC KL S+IVC
Sbjct: 459 ITRLTLEGRSDICDMELRSISRVCDSLCYLNIKGCALLSDACIAYVIQRCKKLCSLIVCY 518
Query: 353 TSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQAR 412
TSF SI ALC+ + N + ++LA +LQMLHM+ C G LL+L+ Q +
Sbjct: 519 TSFSENSILALCATISMTNE-----HMDSSSLACSLQMLHMSKCEGSSETSLLKLITQTQ 573
Query: 413 KLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKN 472
K+KSLCL T+++D L GSSLE LD+S+TMIS AL +++ N LK L ARGCKN
Sbjct: 574 KMKSLCLRDTKVSDSVLCELPGSSLEALDISNTMISRMALTHVISRNPNLKSLKARGCKN 633
Query: 473 LFQQESNGRGIEFSS--YPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSI 530
L Q + +GR E SS + ++F L + LEE+ +GWGFS+ SLE L+PA L I
Sbjct: 634 LLQLQVDGR-TENSSPLFSGQEVFKCLSKGSGLEELEIGWGFSYFSLESLRPAASFLRVI 692
Query: 531 TVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDL 590
+VGLG SLGEDAL+LLP+TCP+LE +VLYFQ +SDS + +IL S + LQ LA+ +C GD+
Sbjct: 693 SVGLGASLGEDALKLLPSTCPLLESIVLYFQEISDSALTSILTSSKHLQELALSYCFGDI 752
Query: 591 SISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQ 650
S+ SFK +PNLRKL+LERV+ WMTN+DL++LTQ+C L ELSLVGC L+SD Q IIS
Sbjct: 753 SLQSFKFSMPNLRKLRLERVSRWMTNDDLLVLTQSCPNLTELSLVGCLHLNSDCQPIISA 812
Query: 651 GWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLV 710
GWPG+ISLHLEECG IT GV SL+ C+ALEDLLLRHNG GI + F+LDA K P LRLV
Sbjct: 813 GWPGMISLHLEECGSITENGVASLYGCVALEDLLLRHNGSGIQKSFLLDATLKFPKLRLV 872
Query: 711 SLDLCDASDGNFEIPDYADR-YSLSTVKITKCKSKNRNLCHNWSEARRQSSVHKESLVLV 769
SLD+CDA +G F++P+ + SLS VKI++CKS+ L + H+E+LV++
Sbjct: 873 SLDMCDAKEGGFDVPEEKEEGRSLSIVKISRCKSERCAL------GGGVAPDHRETLVML 926
Query: 770 WNSKNLIRTVVKERL 784
WN +N +T++K+RL
Sbjct: 927 WNGQNFTKTLLKQRL 941
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147800622|emb|CAN68472.1| hypothetical protein VITISV_009362 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/661 (57%), Positives = 482/661 (72%), Gaps = 16/661 (2%)
Query: 1 MWAMSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLT 60
MWAMS S+ N+PY++L+ C +HP LTVDSE HLSDALL+W+ AN E S+ +EDD T
Sbjct: 98 MWAMSCNSYGNLPYNMLIACTRHPELTVDSEKHLSDALLVWLAANPELSECSSCLEDDCT 157
Query: 61 -ILKEIRISILPLWFAAGKRRSSYFSKLSDESVNSILRLVKVHPAC-LIKVLEDVELKHL 118
+LK+IR+++LPLWF+AGK+ YFSKL+D+S+N+IL LVK HP+ L+ L D +L L
Sbjct: 158 DVLKQIRVNLLPLWFSAGKKWCCYFSKLADKSINAILSLVK-HPSTGLVIDLGDEDLLQL 216
Query: 119 RIRLTEYSEKVNLSGCPQMTSAILLLSVLDSLHCLDPTSRKIFEC-------LDKDQSRI 171
RIRLT+Y++KV++SGCPQ+T +LLLSV+ + +D RK E LD+ Q I
Sbjct: 217 RIRLTKYTKKVDISGCPQITVELLLLSVIPCSYIMDSKLRKSIEQSLINLKHLDRKQYAI 276
Query: 172 PLGFLPIFSFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLV 231
G LPI +FEAVQ+V+I KC LH E+A+ECF KSFP+LRT++AAY L+ K +L +LV
Sbjct: 277 SPGLLPILTFEAVQDVDISKCSRLHFEAAIECFCKSFPALRTLRAAYLLNIKMTSLRQLV 336
Query: 232 QKCPMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSS-LYATSVYHSGPSP 290
KC +L EVDLTVD SPVIP +VS++SSS + P + + ++ L ATS SG
Sbjct: 337 -KCSLLSEVDLTVDVSPVIPMQVSIISSSQTITPKISTTFVQSENYILDATSFSLSGSLL 395
Query: 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIV 350
S IT LTLEGR+D+ D+DL+ IS++CVSL Y+N+K C SVTD +S LIRRC+KLQSI+V
Sbjct: 396 SNITNLTLEGRTDVSDSDLQDISEFCVSLCYLNLKACTSVTDTGMSILIRRCIKLQSILV 455
Query: 351 CDTSFGVYSIRALCSEVPYCNSSALC--GKRNFNTLASNLQMLHMACCNGVDGMYLLELM 408
CDTSFG SI ALC +P +S G + N++A LQ LHM C GVD LLE++
Sbjct: 456 CDTSFGRNSILALCCSLPNSGNSVAVDFGNKQQNSVALKLQTLHMGGCKGVDETSLLEVL 515
Query: 409 CQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNAR 468
Q + L+SLCL T L D AL +FSGSSLEMLDV +TM+SGAALAY+V GN GLK L AR
Sbjct: 516 SQVQVLRSLCLRETHLVDNALCSFSGSSLEMLDVDNTMVSGAALAYVVRGNPGLKCLKAR 575
Query: 469 GCKNLFQQESNGRGIEFSSYP--CADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKL 526
GCKNLFQQ SNG+G E SS+ C +L+ EL +T KLEE GWGFS SLE L PAI
Sbjct: 576 GCKNLFQQGSNGKGEECSSFSHSCKELYLELAKTCKLEEFSFGWGFSHFSLEALGPAITS 635
Query: 527 LHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC 586
L I +GLG SL DAL LLPTTCP LE V+LYFQV++DSI+INI++SLR LQVL +C+C
Sbjct: 636 LKKINMGLGASLSHDALTLLPTTCPFLESVILYFQVITDSIMINIMQSLRYLQVLVLCYC 695
Query: 587 LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQL 646
LGD+S SFK +PNLRKL+LERVTPWMTN++L ILTQNC LVELSL+GC LL+S L
Sbjct: 696 LGDISSLSFKFSMPNLRKLRLERVTPWMTNDELAILTQNCVNLVELSLLGCRLLNSGWHL 755
Query: 647 I 647
+
Sbjct: 756 L 756
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357131799|ref|XP_003567521.1| PREDICTED: BTB/POZ domain-containing protein FBL11-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 329/788 (41%), Positives = 471/788 (59%), Gaps = 33/788 (4%)
Query: 4 MSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLE-SSNRVEDDLTIL 62
+S +SFV IPY LL ++ P LTVDSE L +A+L W+ A++ E N + L++L
Sbjct: 191 ISRRSFVKIPYDLLCSTIECPQLTVDSETQLCEAILYWVSASMQPCELVPNTSDSQLSLL 250
Query: 63 KEIRISILPLWFAAGKRRSSYFSKLSDESVNSILRLVKVHPACLIKVLEDVELKHLRIRL 122
++R+ +LPL + AG RR+ + +L N IL ++K L+ + D +++ RIR+
Sbjct: 251 SKVRVCLLPLGYVAGTRRN--WVELGK---NMILNMLKDRLQGLLGAIADDDMESYRIRI 305
Query: 123 TEYSEKVNLSGCPQMTSAILLLSVLDSLHCLDPTS-RKIFECLDKDQSRIPLGFLPIFSF 181
TEYS+KV LSGC Q+++ L +SVL PT +F+ + S + SF
Sbjct: 306 TEYSKKVVLSGCSQLSTEFLYISVL-------PTDLDAVFK--QRIISSYSQKGVKTLSF 356
Query: 182 EAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVD 241
V V++ KC +H +A++ +FP LRT +AAY L F+ +L L +CP + EVD
Sbjct: 357 RNVHTVDLSKCPNVHFGAAIDWLKLAFPELRTFRAAYCLQFQFQDLQYLFLRCPWIKEVD 416
Query: 242 LTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSVYHSGP-SP--SKITKLTL 298
L +D S V+P K SV+SS + +N ++ SS Y S+ + P +P S I+KLTL
Sbjct: 417 LAIDTSVVLP-KYSVISSRFEVRR-EMNPNL---SSYYMQSLIYETPINPDFSNISKLTL 471
Query: 299 EGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVY 358
EGR+D+ D +L IS SL YINIK C +TD IS L+ C ++ S+I+ T FG +
Sbjct: 472 EGRNDITDENLLEISLLTNSLCYINIKNCCQLTDDGISTLLMNCTQIHSMIISYTCFGNH 531
Query: 359 SIRALCSEVPYCNSSALCGKRNFNT--LASNLQMLHMACCNGVDGMYLLELMCQARKLKS 416
S++ LCS + +S ++ ++ +A LQ LH+ C GV + +LM +KS
Sbjct: 532 SVQTLCS---FESSDNFTDHKDESSHVMAFRLQELHLEGCKGVSYDAMSQLMSNMNIVKS 588
Query: 417 LCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQ 476
LCL T L D AL NF GSSLE LD+S+T++S +LA +V NS L L GC+NL Q
Sbjct: 589 LCLKETSLTDGALCNFVGSSLEYLDISETVVSMISLAPIVRRNSNLTCLKTVGCRNLLFQ 648
Query: 477 ESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGG 536
+ + + Y D ++ T LE++ +G F L L P+ + +TVGLG
Sbjct: 649 HGGVKSMSGNKY--GDFLQQITDTCCLEDVEMGRAFCPSRLNDLMPSFSKIRKMTVGLGT 706
Query: 537 SLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFK 596
+L E+ L LP CP LE +VL FQV+SD I+ N+LES LQVL + +CLG L+ SF+
Sbjct: 707 TLPENILHALPEICPFLESLVLRFQVISDKIVRNLLESSINLQVLCLHYCLGSLTSFSFQ 766
Query: 597 LPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLI 656
+ P LR L+L+ VTPW+TN+DL IL QNC+ LVEL+L GC LL S SQ IIS GWP L
Sbjct: 767 MKAPALRILRLQWVTPWITNDDLTILIQNCN-LVELALSGCKLLDSSSQEIISSGWPNLA 825
Query: 657 SLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCD 716
LHLEECG IT GV+ + NC ALED+LLRH G GI R DA ++P+LR ++LDLCD
Sbjct: 826 CLHLEECGQITLEGVSFILNCKALEDVLLRHTGRGIGRSVTTDAMRELPLLRKLALDLCD 885
Query: 717 ASDGNFEIPDYADRYSLSTVKITKCKSKNRNLCHNWSEARRQSSVHKESLVLVWNSKNLI 776
AS+G ++ P+ + L +V++++CK+ R+ E VHKE++VL W S+ L
Sbjct: 886 ASEGGYDTPNNPEGNMLRSVRMSRCKAA-RSSFELHREVSSSKPVHKETIVLEWTSRQLR 944
Query: 777 RTVVKERL 784
TVV+ERL
Sbjct: 945 TTVVQERL 952
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 784 | ||||||
| TAIR|locus:505006471 | 610 | AT4G15475 "AT4G15475" [Arabido | 0.473 | 0.608 | 0.216 | 3.1e-08 | |
| TAIR|locus:2198903 | 578 | AT1G80630 [Arabidopsis thalian | 0.292 | 0.396 | 0.24 | 1.3e-06 | |
| TAIR|locus:2149805 | 665 | AT5G01720 "AT5G01720" [Arabido | 0.630 | 0.742 | 0.220 | 2.6e-06 | |
| TAIR|locus:2143320 | 642 | AT5G27920 "AT5G27920" [Arabido | 0.427 | 0.521 | 0.224 | 3.9e-06 | |
| WB|WBGene00015350 | 466 | C02F5.7 [Caenorhabditis elegan | 0.235 | 0.396 | 0.268 | 6.4e-06 | |
| UNIPROTKB|F1NHD2 | 423 | FBXL2 "Uncharacterized protein | 0.359 | 0.666 | 0.220 | 1.9e-05 | |
| TAIR|locus:2027082 | 360 | SKP2A [Arabidopsis thaliana (t | 0.294 | 0.641 | 0.263 | 3e-05 | |
| UNIPROTKB|F1NNA4 | 376 | FBXL7 "Uncharacterized protein | 0.151 | 0.316 | 0.251 | 0.00025 | |
| TAIR|locus:2040105 | 628 | EBF1 "AT2G25490" [Arabidopsis | 0.572 | 0.714 | 0.221 | 0.00026 | |
| UNIPROTKB|F1PWK1 | 422 | FBXL2 "Uncharacterized protein | 0.357 | 0.663 | 0.237 | 0.00069 |
| TAIR|locus:505006471 AT4G15475 "AT4G15475" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 162 (62.1 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 88/406 (21%), Positives = 171/406 (42%)
Query: 335 ISNL-IRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHM 393
I NL + C + S+ +C + S+++L + Y L F L+ L++
Sbjct: 142 IENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQGCYVGDQGLAAVGKF---CKQLEELNL 198
Query: 394 ACCNGVDGMYLLELMCQARK-LKSLCLSGT-QLADKALYNFSGSSLEMLDV---SDTMIS 448
C G+ + +++L+ K LKS+ ++ + ++ D +L GS ++L+V I
Sbjct: 199 RFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLSL-EAVGSHCKLLEVLYLDSEYIH 257
Query: 449 GAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFA----------ELG 498
L + G LK L + C ++ G +S L++ +G
Sbjct: 258 DKGLIAVAQGCHRLKNLKLQ-CVSVTDVAFAAVGELCTSLERLALYSFQHFTDKGMRAIG 316
Query: 499 R-TRKLEEIVLG--WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPML-E 554
+ ++KL+++ L + S LE + K L + + ++G + + +CP L E
Sbjct: 317 KGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPRLKE 376
Query: 555 LVVLYFQVMSDSIIINILESLRRLQVLAICHC--LGDLSISSFXXXXXXXXXXXXERVTP 612
L +LY Q + +S + I + + L++L + C +GD+++ S R
Sbjct: 377 LALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRCYE 436
Query: 613 WMTNNDLVILTQNCSELVELSLVGCTXXXXXXXXXXXXGWPGLISLHLEECGDITAYGVT 672
+ N ++ + ++C L ELSL C G L L++ C I+ G+T
Sbjct: 437 -IGNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGC-SLQQLNVSGCNQISDAGIT 494
Query: 673 SLFN-CIALE--DLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLC 715
++ C L D+ + N +P + + PML+ + L C
Sbjct: 495 AIARGCPQLTHLDISVLQNIGDMP---LAELGEGCPMLKDLVLSHC 537
|
|
| TAIR|locus:2198903 AT1G80630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 141 (54.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 60/250 (24%), Positives = 104/250 (41%)
Query: 238 CEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAG---DSSLYATSVYHSGPSPSKIT 294
C +L + S + + +++S+ + +L G D LY Y S +
Sbjct: 243 CLTELDLSDSFLSDDLLCLIASAKLPLKKLLLSDCHGFTFDGILYLLDKYQS------LV 296
Query: 295 KLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTS 354
L L+G + + D + + + L ++N+ C +T + ++I RCV L+ +I+ T+
Sbjct: 297 HLNLKGANFLSDEMVMKLGMFFRRLTFLNLSFCSKLTGLAFFSIIERCVSLRCMIMVGTN 356
Query: 355 FGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMAC----------CNGVDGMYL 404
FGV + L RN N L L+ + C C G+ +
Sbjct: 357 FGVEEYTKDTKDFK-SGVKFLYLSRNHNLLDECLEKISRHCPFIESLDVAQCPGITRDGI 415
Query: 405 LELMCQARKLKSLCLSG-TQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLK 463
LE+ KL+SL +S T + + +F LE L T I AL + GL
Sbjct: 416 LEVWRNCGKLRSLDISRCTGIKSLGVVDFELPKLESLRACGTWIDDEALDMISKKCRGLL 475
Query: 464 YLNARGCKNL 473
+L+ +GC N+
Sbjct: 476 HLDLQGCLNV 485
|
|
| TAIR|locus:2149805 AT5G01720 "AT5G01720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 118/535 (22%), Positives = 211/535 (39%)
Query: 199 SAVECFSKSFPSLRTIKAAYHLDFKTLN---LHKLVQKCPMLCEVDLTVDPSPVIPTKVS 255
S ++ FS + S +++ + K L L +++ + ++DLT P V +S
Sbjct: 33 SDLKSFSLTCKSFYQLESKHRGSLKPLRSDYLPRILTRYRNTTDLDLTFCPR-VTDYALS 91
Query: 256 VVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKY 315
VV S P + + ++ S A + + ++ L ++M DAD +++
Sbjct: 92 VVGCLSG--PTLRSLDLSRSGSFSAAGLLRLALKCVNLVEIDLSNATEMRDADAAVVAE- 148
Query: 316 CVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIV--C----DTSFGVYSIRALCSEVPY 369
SL + + C +TD+ I + C KL ++ + C D G+ +++ C ++
Sbjct: 149 ARSLERLKLGRCKMLTDMGIGCIAVGCKKLNTVSLKWCVGVGDLGVGLLAVK--CKDIRT 206
Query: 370 CNSSAL--CGKRNFNTLA-SNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQ-LA 425
+ S L GK + L +L+ L + C GVD L L + LK L S Q L
Sbjct: 207 LDLSYLPITGKCLHDILKLQHLEELLLEGCFGVDDDSLKSLRHDCKSLKKLDASSCQNLT 266
Query: 426 DKALYNF-SGSS-LEMLDVSD-TMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRG 482
+ L + SG+ L+ LD+S + + A + S L+ + GC G
Sbjct: 267 HRGLTSLLSGAGYLQRLDLSHCSSVISLDFASSLKKVSALQSIRLDGCS------VTPDG 320
Query: 483 IEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDA 542
++ C L E+ ++ + V G S L V+K +K L + + L +
Sbjct: 321 LKAIGTLCNSL-KEVSLSKCVS--VTDEGLSSL---VMK--LKDLRKLDITCCRKLSRVS 372
Query: 543 LRLLPTTCPML-ELVVLYFQVMSDSIIINILESLRRLQVLAIC-HCLGDLSISSFXXXXX 600
+ + +CP+L L + ++S I + R L+ L + + + D + S
Sbjct: 373 ITQIANSCPLLVSLKMESCSLVSREAFWLIGQKCRLLEELDLTDNEIDDEGLKSISSCLS 432
Query: 601 XXXXXXXERVTPWMTNNDLVILTQNCSELVELSLVGCTXXXXXXXXXXXXGWPGLISLHL 660
+ +T+ L + CS L EL L G L ++++
Sbjct: 433 LSSLKLGICLN--ITDKGLSYIGMGCSNLRELDLYRSVGITDVGISTIAQGCIHLETINI 490
Query: 661 EECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLC 715
C DIT + SL C L+ R P I + A + L V L C
Sbjct: 491 SYCQDITDKSLVSLSKCSLLQTFESR-GCPNITSQGLAAIAVRCKRLAKVDLKKC 544
|
|
| TAIR|locus:2143320 AT5G27920 "AT5G27920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 143 (55.4 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 85/379 (22%), Positives = 162/379 (42%)
Query: 235 PMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKIT 294
P L EVD+T + +S+V + L + ++ S + Y G K
Sbjct: 248 PSLQEVDVTRCDRVSLSGLISIVRGHPDIQLLKASHCVSEVSGSFLK--YIKGLKHLKT- 304
Query: 295 KLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSI-IVCD- 352
+ ++G + + D+ L +S C SL I + CV VTD+ + +L R C+ L+++ + C
Sbjct: 305 -IWIDG-AHVSDSSLVSLSSSCRSLMEIGLSRCVDVTDIGMISLARNCLNLKTLNLACCG 362
Query: 353 --TSFGVYSIRALCS-----EVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVD--GMY 403
T + ++ C ++ C+ G ++ + +Q L + C GV+ G+
Sbjct: 363 FVTDVAISAVAQSCRNLGTLKLESCHLITEKGLQSLGCYSMLVQELDLTDCYGVNDRGLE 422
Query: 404 LLELMCQARKLK-SLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGL 462
+ ++LK LC T ++DK +++ ++L++ +G G+ GL
Sbjct: 423 YISKCSNLQRLKLGLC---TNISDKGIFHIGSKCSKLLELDLYRCAG-------FGDDGL 472
Query: 463 KYLNARGCKNL------FQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLS 516
L+ RGCK+L + E G+E +L + L R L+ I G G
Sbjct: 473 AALS-RGCKSLNRLILSYCCELTDTGVE--QIRQLELLSHL-ELRGLKNIT-GVG----- 522
Query: 517 LEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLR 576
L + K L + V L ++ + L L + L +SD+ + ++ +L
Sbjct: 523 LAAIASGCKKLGYLDVKLCENIDDSGFWALAYFSKNLRQINLCNCSVSDTALCMLMSNLS 582
Query: 577 RLQVLAICHCLGDLSISSF 595
R+Q + + H L +++ F
Sbjct: 583 RVQDVDLVH-LSRVTVEGF 600
|
|
| WB|WBGene00015350 C02F5.7 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 54/201 (26%), Positives = 93/201 (46%)
Query: 292 KITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIV- 350
K+ L LE S + D +++I C +L Y+NI C ++ D + ++ C L ++I+
Sbjct: 176 KLNYLNLENCSSITDRAMKYIGDGCPNLSYLNISWCDAIQDRGVQIILSNCKSLDTLILR 235
Query: 351 -CD-TSFGVY-SIRALCSEVPYCNSSALCGK------RNFNTLASNLQMLHMACCNGVDG 401
C+ + V+ S+ A + N C + +N A+ L+ L M+ CN +
Sbjct: 236 GCEGLTENVFGSVEAHMGAIKKLNLLQ-CFQLTDITVQNIANGATALEYLCMSNCNQISD 294
Query: 402 MYLLELMCQARKLKSLCLSG-TQLADKALYNFSGS--SLEMLDVSD-TMISGAALAYMVH 457
L+ L + LK L LSG T L D + LE LD+ D ++IS + + +
Sbjct: 295 RSLVSLGQHSHNLKVLELSGCTLLGDNGFIPLARGCRQLERLDMEDCSLISDHTINSLAN 354
Query: 458 GNSGLKYLNARGCKNLFQQES 478
+ L+ L+ C+ L ES
Sbjct: 355 NCTALRELSLSHCE-LITDES 374
|
|
| UNIPROTKB|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 134 (52.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 68/308 (22%), Positives = 137/308 (44%)
Query: 184 VQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLT 243
++++++ CH + +S+++ F+++ ++ + + L + C L +DLT
Sbjct: 80 LRQLSLRGCHVVG-DSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLT 138
Query: 244 VDPSPVIPTKVSVVSSSSALMPLV-LNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRS 302
S V T S+ S L LN S + G S K L L G +
Sbjct: 139 ---SCVAITNSSLKGLSEGCRNLEHLNLSWCDQITKDGIEALVKGCSGLKA--LFLRGCT 193
Query: 303 DMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIV---CD-TSFGVY 358
+ D L+ I +C L +N++ C ++D I + R C +LQS+ V C+ T +
Sbjct: 194 QLEDEALKHIQNHCHELAILNLQSCTQISDEGIVKICRGCHRLQSLCVSGCCNLTDASLT 253
Query: 359 SIRALCSEVPYCNSSALCGK---RNFNTLASN---LQMLHMACCNGVDGMYLLELMCQAR 412
++ C + + A C + F LA N L+ + + C + L++L
Sbjct: 254 ALGLNCPRLKILEA-ARCSQLTDAGFTLLARNCHELEKMDLEECVLITDSTLIQLSIHCP 312
Query: 413 KLKSLCLSGTQL-ADKALYNFSGSS-----LEMLDVSDTM-ISGAALAYMVHGNSGLKYL 465
KL++L LS +L D + + S S+ L++L++ + + I+ L ++ + ++ L+ +
Sbjct: 313 KLQALSLSHCELITDDGILHLSNSTCGHERLQVLELDNCLLITDVTLEHLENCHN-LERI 371
Query: 466 NARGCKNL 473
C+ +
Sbjct: 372 ELYDCQQV 379
|
|
| TAIR|locus:2027082 SKP2A [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 131 (51.2 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 70/266 (26%), Positives = 116/266 (43%)
Query: 230 LVQKCPMLCEVDLTVDPSPVIPTKVSVVSSSS-ALMPLVLNKSIA-GDSSLYATSVYHSG 287
LV K L ++L D + V +++ L L L+KS+ D SLYA + H
Sbjct: 85 LVPKFVKLQTLNLRQDKPQLEDNAVEAIANHCHELQELDLSKSLKITDRSLYALA--HGC 142
Query: 288 PSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCV-SVTDVCISNLIRRCVKLQ 346
P +TKL L G + D + +++++C L +N+ GCV +VTD + + C ++Q
Sbjct: 143 PD---LTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQMQ 199
Query: 347 SIIV--CD--TSFGVYSIRALCSEVPYCNSSALCG-----KRNFNTLAS---NLQMLHMA 394
S+ + C+ + GV S+ C P + LCG + LA +L+ L +
Sbjct: 200 SLNLGWCENISDDGVMSLAYGC---PDLRTLDLCGCVLITDESVVALADWCVHLRSLGLY 256
Query: 395 CCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSD-TMISGAALA 453
C + + L K K + K Y+ G L L++S T ++ +A+
Sbjct: 257 YCRNITDRAMYSLAQSGVKNKP---GSWKSVKKGKYDEEG--LRSLNISQCTALTPSAVQ 311
Query: 454 YM------VHGNSGLKYLNARGCKNL 473
+ +H SG L GC NL
Sbjct: 312 AVCDSFPALHTCSGRHSLVMSGCLNL 337
|
|
| UNIPROTKB|F1NNA4 FBXL7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 0.00025, P = 0.00025
Identities = 33/131 (25%), Positives = 65/131 (49%)
Query: 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSI-- 348
S++ L++ + D + +I+KYC L Y+N +GC +TD + L + C KL+S+
Sbjct: 247 SRLRYLSIAHCGRITDVGIRYIAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDI 306
Query: 349 ----IVCDTSFGVYSIRAL-CSEVPYCNSSALCGKRNFNTLASN---LQMLHMACCN-GV 399
+V DT ++ + + ++ G+ +A+N LQML++ C+ V
Sbjct: 307 GKCPLVSDTGLEFLALNCFNLKRLSLKSCESITGQ-GLQIVAANCFDLQMLNVQDCDVSV 365
Query: 400 DGMYLLELMCQ 410
D + ++ C+
Sbjct: 366 DALRFVKRHCK 376
|
|
| TAIR|locus:2040105 EBF1 "AT2G25490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 0.00026, P = 0.00026
Identities = 110/496 (22%), Positives = 203/496 (40%)
Query: 213 TIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSSSSA-LMPLVLNK- 270
+I+ + L L + + CP L + L + S + + ++ A L L LN+
Sbjct: 155 SIRGSNSAKVSDLGLRSIGRSCPSLGSLSLW-NVSTITDNGLLEIAEGCAQLEKLELNRC 213
Query: 271 SIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSV 330
S D L A + S P+ +T+LTLE S + D L I++ C L ++IK C V
Sbjct: 214 STITDKGLVA--IAKSCPN---LTELTLEACSRIGDEGLLAIARSCSKLKSVSIKNCPLV 268
Query: 331 TDVCISNLIRR--C----VKLQSIIVCDTSFGVYSIRALC-SEVPYCNSSALCGKRNFNT 383
D I++L+ C +KLQ + V D S V L +++ S + ++ F
Sbjct: 269 RDQGIASLLSNTTCSLAKLKLQMLNVTDVSLAVVGHYGLSITDLVLAGLSHV-SEKGFWV 327
Query: 384 LASN--LQMLH---MACCNGVDGMYLLELMCQARKLKSLCLSGTQL-ADKALYNFSGSSL 437
+ + LQ L+ + C GV M L + +K +S + L +D L +F+ +SL
Sbjct: 328 MGNGVGLQKLNSLTITACQGVTDMGLESVGKGCPNMKKAIISKSPLLSDNGLVSFAKASL 387
Query: 438 EM----LDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADL 493
+ L+ + +++ LK + C ++ + G+ SS+ C+ L
Sbjct: 388 SLESLQLEECHRVTQFGFFGSLLNCGEKLKAFSLVNCLSIRDLTT---GLPASSH-CSAL 443
Query: 494 FAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITV-GLGGSLGEDALRLLPTTCPM 552
R+ + GF +L + L I + GL G L L+ ++ +
Sbjct: 444 -----RSLSIRNCP---GFGDANLAAIGKLCPQLEDIDLCGLKGITESGFLHLIQSS--L 493
Query: 553 LELVVLYFQVMSDSIIINIL-ESLRRLQVLAI--CHCLGDLSISSFXXXXXXXXXXXXER 609
+++ ++D +I I + L+VL I C + D S+ S +
Sbjct: 494 VKINFSGCSNLTDRVISAITARNGWTLEVLNIDGCSNITDASLVSIAANCQILSDLDISK 553
Query: 610 VTPWMTNNDLVILTQNCS-ELVELSLVGCTXXXXXXXXXXXXGWPGLISLHLEECGDITA 668
++++ + L + +L LS+ GC+ L+ L+L++C I+
Sbjct: 554 CA--ISDSGIQALASSDKLKLQILSVAGCSMVTDKSLPAIVGLGSTLLGLNLQQCRSISN 611
Query: 669 YGVTSLFNCIALEDLL 684
V L + D+L
Sbjct: 612 STVDFLVERLYKCDIL 627
|
|
| UNIPROTKB|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 74/311 (23%), Positives = 129/311 (41%)
Query: 293 ITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSI---- 348
+ KL+L G + D+ L+ ++ C ++ ++N+ GC +TD +L R C KL+ +
Sbjct: 79 LRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTS 138
Query: 349 IVCDTSFGVYSIRALCSEVPYCNSSALCG---KRNFNTLASN---LQMLHMACCNGVDGM 402
V T+ + I C + Y N S C K L L+ L + C ++
Sbjct: 139 CVSITNSSLKGISEGCRNLEYLNLS-WCDQITKDGIEALVRGCRGLKALLLRGCTQLEDE 197
Query: 403 YLLELMCQARKLKSLCL-SGTQLADKALYNFSGSS--LEMLDVSD-TMISGAALAYMVHG 458
L + +L SL L S +++ D+ + L+ L +S + ++ A+L +
Sbjct: 198 ALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALALN 257
Query: 459 NSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLE 518
L+ L A C +L G + C DL LEE +L + + L
Sbjct: 258 CPRLQILEAARCSHL-----TDAGFTLLARNCHDL-----EKMDLEECILITDSTLIQLS 307
Query: 519 VLKPAIKLLHSITVGLGGSLGEDA-LRLLPTTCPMLELVVLYFQ--VMSDSIIINILESL 575
V P ++ L L + +D L L +TC L VL ++ + + LE+
Sbjct: 308 VHCPKLQALSLSHCEL---ITDDGILHLSNSTCGHERLRVLELDNCLLITDVALEHLENC 364
Query: 576 RRLQVLAICHC 586
R L+ L + C
Sbjct: 365 RGLERLELYDC 375
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 784 | |||
| pfam07707 | 101 | pfam07707, BACK, BTB And C-terminal Kelch | 0.002 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 0.003 | |
| smart00875 | 101 | smart00875, BACK, BTB And C-terminal Kelch | 0.003 |
| >gnl|CDD|149006 pfam07707, BACK, BTB And C-terminal Kelch | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.002
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 4 MSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLTILK 63
+ F+ + LLE + L V SE + +A++ W+ + NR + +L
Sbjct: 32 SKSEEFLELSKEQLLELLSSDELNVPSEEEVFEAVIKWVKHD-----VENRKKHLPELLS 86
Query: 64 EIRISILPLWF 74
+R+ +L +
Sbjct: 87 AVRLPLLSPEY 97
|
This domain is found associated with pfam00651 and pfam01344. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues. This family appears to be closely related to the BTB domain (Finn RD, personal observation). Length = 101 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 32/180 (17%)
Query: 304 MC---DADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQ--SIIVCD--TSFG 356
MC D L+ +S C L + + G + D + L + C LQ + C+ T G
Sbjct: 37 MCPISDPPLDQLS-NCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSG 95
Query: 357 VYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKS 416
+ ++ C ++ N L RN + + + L L L++
Sbjct: 96 IVALATNCPKLQTIN---LGRHRN---------------GHLITDVSLSALGKNCTFLQT 137
Query: 417 LCLSGTQLADK---ALYNFSGSSLEMLDVSD-TMISGAALAYMVHGNS--GLKYLNARGC 470
+ +G + DK L + SLE L +++ ++ ++ ++ N L L RGC
Sbjct: 138 VGFAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGC 197
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 4 MSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLTILK 63
S + F+ +P LLE + L V SE + +A+L W+ + + R E +L+
Sbjct: 32 SSSEEFLELPLEQLLELLSSDDLNVSSEEEVFEAVLRWVKHDPEK-----RREHLPELLE 86
Query: 64 EIRISILPLWF 74
+R+ +L +
Sbjct: 87 HVRLPLLSPDY 97
|
The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues. Length = 101 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 784 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.96 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.96 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.92 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.9 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.84 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.81 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.7 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.66 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.66 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.62 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.61 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.6 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.6 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.55 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.49 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.48 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.47 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.43 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.33 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.23 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.21 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.12 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.02 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.98 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.97 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.83 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.81 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.62 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.5 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.5 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.46 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.29 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.28 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.26 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 98.23 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.23 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.22 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.13 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.06 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.99 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.95 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.84 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.72 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.54 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.47 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.27 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.21 | |
| PF07707 | 103 | BACK: BTB And C-terminal Kelch; InterPro: IPR01170 | 97.06 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 97.06 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 96.96 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 96.94 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.9 | |
| smart00875 | 101 | BACK BTB And C-terminal Kelch. The BACK domain is | 96.9 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 96.79 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.74 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 96.58 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 96.47 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.44 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.42 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 96.31 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.18 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 95.95 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.67 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 95.51 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.51 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 95.21 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.08 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 95.07 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 94.63 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 94.55 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 94.38 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 94.34 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 94.23 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 94.09 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 93.27 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 92.68 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 92.54 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 88.23 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 85.75 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 82.36 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=302.64 Aligned_cols=466 Identities=19% Similarity=0.105 Sum_probs=292.1
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
.+.+|++|++++|....... ...+++|++|++++ +.++......+ ..+++|++|+|+.+.....
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p-----~~~l~~L~~L~Ls~-n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~--------- 179 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIP-----RGSIPNLETLDLSN-NMLSGEIPNDI-GSFSSLKVLDLGGNVLVGK--------- 179 (968)
T ss_pred cCCCCCEEECcCCccccccC-----ccccCCCCEEECcC-CcccccCChHH-hcCCCCCEEECccCccccc---------
Confidence 45667777776654321100 12456677777766 34433222333 3667777777764321100
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLI 339 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~ 339 (784)
.+....++++|++|++++|.... .....+ ..+++|++|++++|.... .++..+
T Consensus 180 -----------------------~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l-~~l~~L~~L~L~~n~l~~--~~p~~l 232 (968)
T PLN00113 180 -----------------------IPNSLTNLTSLEFLTLASNQLVG-QIPREL-GQMKSLKWIYLGYNNLSG--EIPYEI 232 (968)
T ss_pred -----------------------CChhhhhCcCCCeeeccCCCCcC-cCChHH-cCcCCccEEECcCCccCC--cCChhH
Confidence 01113456777777777764321 111222 346677777777754321 122334
Q ss_pred HhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEe
Q 003957 340 RRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCL 419 (784)
Q Consensus 340 ~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L 419 (784)
.++++|++|++++|.+... +|..+..+++|+.|++++|.... ..+.....+++|+.|++
T Consensus 233 ~~l~~L~~L~L~~n~l~~~-------------------~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGP-------------------IPSSLGNLKNLQYLFLYQNKLSG--PIPPSIFSLQKLISLDL 291 (968)
T ss_pred hcCCCCCEEECcCceeccc-------------------cChhHhCCCCCCEEECcCCeeec--cCchhHhhccCcCEEEC
Confidence 5677777777777765431 34445677788888888775421 11222356778888888
Q ss_pred cCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhh
Q 003957 420 SGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELG 498 (784)
Q Consensus 420 s~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 498 (784)
++|.+....+..+. .++|++|++++|.+....... +..+++|+.|++++|... +.+...++
T Consensus 292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~-----------------~~~p~~l~ 353 (968)
T PLN00113 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFS-----------------GEIPKNLG 353 (968)
T ss_pred cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCEEECcCCCCc-----------------CcCChHHh
Confidence 88877655544444 577888888888766543333 357788888888776431 12334566
Q ss_pred cCCCccEEEecc-ccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCC
Q 003957 499 RTRKLEEIVLGW-GFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRR 577 (784)
Q Consensus 499 ~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~ 577 (784)
.+++|+.|++++ .+... ....+..+.+|+.|+++++. +.......+.. +++|+.|+++.|.++.. ++..+..+++
T Consensus 354 ~~~~L~~L~Ls~n~l~~~-~p~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~-~~~L~~L~L~~n~l~~~-~p~~~~~l~~ 429 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGE-IPEGLCSSGNLFKLILFSNS-LEGEIPKSLGA-CRSLRRVRLQDNSFSGE-LPSEFTKLPL 429 (968)
T ss_pred CCCCCcEEECCCCeeEee-CChhHhCcCCCCEEECcCCE-ecccCCHHHhC-CCCCCEEECcCCEeeeE-CChhHhcCCC
Confidence 778888888843 33322 22234456778888888773 22222223333 78899999987777654 3445778899
Q ss_pred CcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcE
Q 003957 578 LQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLIS 657 (784)
Q Consensus 578 L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~ 657 (784)
|+.|++++|............+++|+.|++++| .+... +.... ..++|+.|++++|....... ....++++|+.
T Consensus 430 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n--~~~~~-~p~~~-~~~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~ 503 (968)
T PLN00113 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARN--KFFGG-LPDSF-GSKRLENLDLSRNQFSGAVP--RKLGSLSELMQ 503 (968)
T ss_pred CCEEECcCCcccCccChhhccCCCCcEEECcCc--eeeee-cCccc-ccccceEEECcCCccCCccC--hhhhhhhccCE
Confidence 999999988322222222335689999999996 33321 11111 34689999999998765322 22345888999
Q ss_pred EeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEE
Q 003957 658 LHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTV 736 (784)
Q Consensus 658 L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L 736 (784)
|+|++|. ++...+..+.++++|++|++++|.+ . ..++..+..+++|+.|++++|... + .+|. +..+++|+.|
T Consensus 504 L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l--~-~~~p~~~~~l~~L~~L~Ls~N~l~-~--~~p~~l~~l~~L~~l 576 (968)
T PLN00113 504 LKLSENK-LSGEIPDELSSCKKLVSLDLSHNQL--S-GQIPASFSEMPVLSQLDLSQNQLS-G--EIPKNLGNVESLVQV 576 (968)
T ss_pred EECcCCc-ceeeCChHHcCccCCCEEECCCCcc--c-ccCChhHhCcccCCEEECCCCccc-c--cCChhHhcCcccCEE
Confidence 9999986 5545556677899999999999965 5 567778889999999999998876 3 3577 8889999999
Q ss_pred EecCCCCc
Q 003957 737 KITKCKSK 744 (784)
Q Consensus 737 ~is~C~~~ 744 (784)
++++|+..
T Consensus 577 ~ls~N~l~ 584 (968)
T PLN00113 577 NISHNHLH 584 (968)
T ss_pred eccCCcce
Confidence 99999754
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-28 Score=297.75 Aligned_cols=398 Identities=18% Similarity=0.114 Sum_probs=248.0
Q ss_pred CCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccC
Q 003957 288 PSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEV 367 (784)
Q Consensus 288 ~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l 367 (784)
..+++|++|++++|...+ .....+ ..+++|++|++++|..... ++..+.++++|+.|++++|.+..
T Consensus 161 ~~l~~L~~L~L~~n~l~~-~~p~~~-~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~---------- 226 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVG-KIPNSL-TNLTSLEFLTLASNQLVGQ--IPRELGQMKSLKWIYLGYNNLSG---------- 226 (968)
T ss_pred hcCCCCCEEECccCcccc-cCChhh-hhCcCCCeeeccCCCCcCc--CChHHcCcCCccEEECcCCccCC----------
Confidence 344555555555543211 111112 2245555555555432111 12223445555555555554432
Q ss_pred CccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCc
Q 003957 368 PYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTM 446 (784)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~ 446 (784)
.+|..+..+++|++|++++|.... .++..+..+++|+.|++++|.+.+..+..+. .++|++|++++|.
T Consensus 227 ---------~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 227 ---------EIPYEIGGLTSLNHLDLVYNNLTG--PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred ---------cCChhHhcCCCCCEEECcCceecc--ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 134445677778888887765421 1222336677788888877776655444444 4677888888776
Q ss_pred cchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcC
Q 003957 447 ISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIK 525 (784)
Q Consensus 447 i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~ 525 (784)
++..... .+..+++|++|++.++... +.....+..+++|+.|++. +.+.. .....+..+.
T Consensus 296 l~~~~p~-~~~~l~~L~~L~l~~n~~~-----------------~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~~~ 356 (968)
T PLN00113 296 LSGEIPE-LVIQLQNLEILHLFSNNFT-----------------GKIPVALTSLPRLQVLQLWSNKFSG-EIPKNLGKHN 356 (968)
T ss_pred eccCCCh-hHcCCCCCcEEECCCCccC-----------------CcCChhHhcCCCCCEEECcCCCCcC-cCChHHhCCC
Confidence 6544332 2356777888877665321 1223356677888888884 33332 2223455677
Q ss_pred cccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccE
Q 003957 526 LLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRK 604 (784)
Q Consensus 526 ~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~ 604 (784)
+|+.|+++++. +.......+. .+++|+.|+++.|.+.+. ++..+..+++|+.|++++| .....+..+ ..+++|+.
T Consensus 357 ~L~~L~Ls~n~-l~~~~p~~~~-~~~~L~~L~l~~n~l~~~-~p~~~~~~~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~ 432 (968)
T PLN00113 357 NLTVLDLSTNN-LTGEIPEGLC-SSGNLFKLILFSNSLEGE-IPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYF 432 (968)
T ss_pred CCcEEECCCCe-eEeeCChhHh-CcCCCCEEECcCCEeccc-CCHHHhCCCCCCEEECcCCEeeeECChhH-hcCCCCCE
Confidence 88888888773 2211111222 256788888877776654 3455678889999999888 333333333 35589999
Q ss_pred EEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEE
Q 003957 605 LKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLL 684 (784)
Q Consensus 605 L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~ 684 (784)
|+++++ .++.. +......+++|+.|++++|........ . .+.++|+.|++++|. ++...+..+.++++|+.|+
T Consensus 433 L~Ls~N--~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~p~--~-~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~ 505 (968)
T PLN00113 433 LDISNN--NLQGR-INSRKWDMPSLQMLSLARNKFFGGLPD--S-FGSKRLENLDLSRNQ-FSGAVPRKLGSLSELMQLK 505 (968)
T ss_pred EECcCC--cccCc-cChhhccCCCCcEEECcCceeeeecCc--c-cccccceEEECcCCc-cCCccChhhhhhhccCEEE
Confidence 999984 45532 222334678999999999987542211 1 235789999999987 5545555667889999999
Q ss_pred cccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCcCc
Q 003957 685 LRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 685 L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~~ 746 (784)
+++|.+ . ..+++.+..+++|+.|+|++|... + .+|. +.++++|+.|++++|+....
T Consensus 506 Ls~N~l--~-~~~p~~~~~l~~L~~L~Ls~N~l~-~--~~p~~~~~l~~L~~L~Ls~N~l~~~ 562 (968)
T PLN00113 506 LSENKL--S-GEIPDELSSCKKLVSLDLSHNQLS-G--QIPASFSEMPVLSQLDLSQNQLSGE 562 (968)
T ss_pred CcCCcc--e-eeCChHHcCccCCCEEECCCCccc-c--cCChhHhCcccCCEEECCCCccccc
Confidence 999975 4 567778889999999999998877 3 3466 88999999999999986543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-25 Score=227.97 Aligned_cols=376 Identities=19% Similarity=0.257 Sum_probs=231.1
Q ss_pred cceeeEEeeeeeceeecCCCcchhHHHHHHhhccCcccCCccccccccccccccccCCCCCcCeEEeCcceEEecCCCCC
Q 003957 115 LKHLRIRLTEYSEKVNLSGCPQMTSAILLLSVLDSLHCLDPTSRKIFECLDKDQSRIPLGFLPIFSFEAVQEVNICKCHA 194 (784)
Q Consensus 115 ~~~~~~~~~~~~~~~~ls~C~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~L~Ls~c~~ 194 (784)
+.+.-+|++.|+++..+..|.|.++.+.. -+ .|...+..+..|. -+.
T Consensus 76 PpEl~lkvFS~LDtksl~r~a~~c~~~n~-~A------lD~~~~q~idL~t--------------------------~~r 122 (483)
T KOG4341|consen 76 PPELLLKVFSMLDTKSLCRAAQCCTMWNK-LA------LDGSCWQHIDLFT--------------------------FQR 122 (483)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHHhhh-hh------hccccceeeehhc--------------------------chh
Confidence 55566889999999999999999987765 22 2333333333332 111
Q ss_pred CChhhHHHHHH-hhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeecCCcccccccccccc
Q 003957 195 LHLESAVECFS-KSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIA 273 (784)
Q Consensus 195 l~~~~~~~~~~-~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 273 (784)
-.+..++..+. .....|+.|.+.+|..+.+..+..+..+||++++|++. +|.++++....++
T Consensus 123 Dv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~--gc~~iTd~s~~sl--------------- 185 (483)
T KOG4341|consen 123 DVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALY--GCKKITDSSLLSL--------------- 185 (483)
T ss_pred cCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhh--cceeccHHHHHHH---------------
Confidence 11112222222 33357888888888888888888888788888777555 4544443322111
Q ss_pred CCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCC
Q 003957 274 GDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDT 353 (784)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~ 353 (784)
..++++|++|++..|..+++..++.++.+|++|++|++++|+.++..+++.+.++|.+
T Consensus 186 -------------a~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~--------- 243 (483)
T KOG4341|consen 186 -------------ARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKE--------- 243 (483)
T ss_pred -------------HHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchh---------
Confidence 1234555555555555556655665666666666666666655555555555544443
Q ss_pred CCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc
Q 003957 354 SFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS 433 (784)
Q Consensus 354 ~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~ 433 (784)
++.+.+.+|...++..+......++-+..+++..|
T Consensus 244 ----------------------------------l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c----------- 278 (483)
T KOG4341|consen 244 ----------------------------------LEKLSLKGCLELELEALLKAAAYCLEILKLNLQHC----------- 278 (483)
T ss_pred ----------------------------------hhhhhhcccccccHHHHHHHhccChHhhccchhhh-----------
Confidence 34444445555555555444333333333322222
Q ss_pred cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccC
Q 003957 434 GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFS 513 (784)
Q Consensus 434 ~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 513 (784)
+.+++.++..+..++..|+.|..++|
T Consensus 279 -----------~~lTD~~~~~i~~~c~~lq~l~~s~~------------------------------------------- 304 (483)
T KOG4341|consen 279 -----------NQLTDEDLWLIACGCHALQVLCYSSC------------------------------------------- 304 (483)
T ss_pred -----------ccccchHHHHHhhhhhHhhhhcccCC-------------------------------------------
Confidence 12333343334344444444444444
Q ss_pred cccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEe-eeeccChHHHHHHHhhCCCCcEEEeccc--CChh
Q 003957 514 FLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVL-YFQVMSDSIIINILESLRRLQVLAICHC--LGDL 590 (784)
Q Consensus 514 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L-~~~~i~~~~l~~~~~~l~~L~~L~Ls~c--~~~~ 590 (784)
..+++..+.+++.+|++|+.+.+ .|..+++.++..+..+++.|+.+++..| ..+.
T Consensus 305 ----------------------t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 305 ----------------------TDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred ----------------------CCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 33444556667777777777777 4677777777777777888888888877 4566
Q ss_pred HHHHhhcCCCCccEEEccCCCCCCChHHHHHHHh---cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCC
Q 003957 591 SISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQ---NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDIT 667 (784)
Q Consensus 591 ~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~---~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~ 667 (784)
++.++...||.|+++.++.| ..++|+++..+.. +...|+.+.+++|+.+++.....+. .|++|+.+++.+|..++
T Consensus 363 tL~sls~~C~~lr~lslshc-e~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 363 TLASLSRNCPRLRVLSLSHC-ELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVT 440 (483)
T ss_pred hHhhhccCCchhccCChhhh-hhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhh
Confidence 67778888888888888888 6788887765543 4556788888888888877766653 57888888888888888
Q ss_pred HHHHHHhh-CCCCCCEEEc
Q 003957 668 AYGVTSLF-NCIALEDLLL 685 (784)
Q Consensus 668 ~~~~~~l~-~~~~L~~L~L 685 (784)
..++..+. ++|+++..-+
T Consensus 441 k~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 441 KEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhHHHHhhCccceehhh
Confidence 77777775 6777766443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-24 Score=218.33 Aligned_cols=309 Identities=23% Similarity=0.309 Sum_probs=267.3
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC-cCchhhhhhcc--cCCcCEEEecCC-ccchhhHHHHHhcCCC
Q 003957 386 SNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT-QLADKALYNFS--GSSLEMLDVSDT-MISGAALAYMVHGNSG 461 (784)
Q Consensus 386 ~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~-~l~~~~~~~l~--~~~L~~L~Ls~~-~i~~~~l~~~~~~l~~ 461 (784)
..|+.|.+.+|..+.+..+..+..++|++++|.+.+| .+++.....+. ++.|++|++..| .+++..+..+..+|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4689999999999999999888899999999999887 68888877777 789999999997 7899999989999999
Q ss_pred ccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChH
Q 003957 462 LKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGED 541 (784)
Q Consensus 462 L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 541 (784)
|++|++++|..+...+++ .+..++..++.+.+.||..++.+
T Consensus 218 L~~lNlSwc~qi~~~gv~---------------------------------------~~~rG~~~l~~~~~kGC~e~~le 258 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQ---------------------------------------ALQRGCKELEKLSLKGCLELELE 258 (483)
T ss_pred HHHhhhccCchhhcCcch---------------------------------------HHhccchhhhhhhhcccccccHH
Confidence 999999999988876654 23455556677766789899999
Q ss_pred HHHHhhccCCCCcEEEe-eeeccChHHHHHHHhhCCCCcEEEeccc--CChhHHHHhhcCCCCccEEEccCCCCCCChHH
Q 003957 542 ALRLLPTTCPMLELVVL-YFQVMSDSIIINILESLRRLQVLAICHC--LGDLSISSFKLPLPNLRKLKLERVTPWMTNND 618 (784)
Q Consensus 542 ~l~~l~~~~~~L~~L~L-~~~~i~~~~l~~~~~~l~~L~~L~Ls~c--~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~ 618 (784)
.+..+..+++.+.++++ .|+.++|.++..+..++..||.|+.++| .++..+..+...+++|+.|.+.+| ..+++.+
T Consensus 259 ~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c-~~fsd~~ 337 (483)
T KOG4341|consen 259 ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGC-QQFSDRG 337 (483)
T ss_pred HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecccc-chhhhhh
Confidence 99999999999999998 7999999999999999999999999999 688889999999999999999999 6899999
Q ss_pred HHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhh----CCCCCCEEEcccCCCCCCh
Q 003957 619 LVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLF----NCIALEDLLLRHNGPGIPR 694 (784)
Q Consensus 619 l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~----~~~~L~~L~L~~n~~gl~~ 694 (784)
+..+..+|+.|+.+++.+|....+..+..++.+|+.|+.|.+++|..+++.|+..+. ....|+.+.+++|+. +.
T Consensus 338 ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~-i~- 415 (483)
T KOG4341|consen 338 FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL-IT- 415 (483)
T ss_pred hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC-ch-
Confidence 999999999999999999999998888888889999999999999999999988874 577899999999974 55
Q ss_pred hHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEEE
Q 003957 695 DFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVK 737 (784)
Q Consensus 695 ~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~ 737 (784)
+...+.+..+++|+.+++.+|...+.. ++.. ...+++++...
T Consensus 416 d~~Le~l~~c~~Leri~l~~~q~vtk~-~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 416 DATLEHLSICRNLERIELIDCQDVTKE-AISRFATHLPNIKVHA 458 (483)
T ss_pred HHHHHHHhhCcccceeeeechhhhhhh-hhHHHHhhCccceehh
Confidence 777777899999999999999888544 3444 55566665543
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-22 Score=210.45 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=101.4
Q ss_pred CCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCcc
Q 003957 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYC 370 (784)
Q Consensus 291 ~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~ 370 (784)
+.-++|++++|. +.+..+.++- ++++|+.+++..+ .++ .++.+..-..+|+.|+|.+|.|....-.++
T Consensus 78 ~~t~~LdlsnNk-l~~id~~~f~-nl~nLq~v~l~~N-~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L------- 145 (873)
T KOG4194|consen 78 SQTQTLDLSNNK-LSHIDFEFFY-NLPNLQEVNLNKN-ELT--RIPRFGHESGHLEKLDLRHNLISSVTSEEL------- 145 (873)
T ss_pred cceeeeeccccc-cccCcHHHHh-cCCcceeeeeccc-hhh--hcccccccccceeEEeeeccccccccHHHH-------
Confidence 456789999874 5555555543 4888888888774 222 233444445678888888886655333322
Q ss_pred CcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccch
Q 003957 371 NSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISG 449 (784)
Q Consensus 371 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~ 449 (784)
..++.|+.|||+.+.. ++...+.+ ....++++|+|++|++++.+...|. ..+|..|.|+.|.++.
T Consensus 146 ------------~~l~alrslDLSrN~i-s~i~~~sf-p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 146 ------------SALPALRSLDLSRNLI-SEIPKPSF-PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred ------------HhHhhhhhhhhhhchh-hcccCCCC-CCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence 5567788888887643 22222222 4557788888888888887777776 4588888888888877
Q ss_pred hhHHHHHhcCCCccEEeccCC
Q 003957 450 AALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 450 ~~l~~~~~~l~~L~~L~L~~c 470 (784)
.....+ +++|.|+.|++...
T Consensus 212 Lp~r~F-k~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 212 LPQRSF-KRLPKLESLDLNRN 231 (873)
T ss_pred cCHHHh-hhcchhhhhhcccc
Confidence 665544 67888888887654
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-21 Score=207.02 Aligned_cols=354 Identities=17% Similarity=0.141 Sum_probs=206.5
Q ss_pred CCCEEEeeCCCCCHHHHHHhhccCCcc-----CcccccccchhhhcCCCccEEEecCCCC--CCHHHHHHHHHhCccccE
Q 003957 344 KLQSIIVCDTSFGVYSIRALCSEVPYC-----NSSALCGKRNFNTLASNLQMLHMACCNG--VDGMYLLELMCQARKLKS 416 (784)
Q Consensus 344 ~L~~L~Ls~~~i~~~~l~~l~~~l~~~-----~~~~~~~~~~~~~~l~~L~~L~L~~c~~--l~~~~l~~l~~~~~~L~~ 416 (784)
.-++|++++|.+....+..|. .+.++ +...+..+|.+.....+|+.|+|.++.. ++.+.+ +..+.|++
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~-nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L----~~l~alrs 153 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFY-NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEEL----SALPALRS 153 (873)
T ss_pred ceeeeeccccccccCcHHHHh-cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHH----HhHhhhhh
Confidence 345677777766554444331 11111 1223455666656666677777776533 222222 45577788
Q ss_pred EEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHH
Q 003957 417 LCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFA 495 (784)
Q Consensus 417 L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 495 (784)
|+|+.|.++......|. +.++++|+|++|.|+......+ .++.+|..|.+++. .++.....
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F-~~lnsL~tlkLsrN-rittLp~r---------------- 215 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF-DSLNSLLTLKLSRN-RITTLPQR---------------- 215 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc-cccchheeeecccC-cccccCHH----------------
Confidence 88888777777766666 4778888888887776665555 45567777777664 33332221
Q ss_pred hhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCC--CCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHH
Q 003957 496 ELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLG--GSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINIL 572 (784)
Q Consensus 496 ~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~--~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~ 572 (784)
.+.++++|+.|+|. +.+... ....+.++.+|+.|.+..+ ..+.+..+ -.|..+++|+|..|.+.... ..++
T Consensus 216 ~Fk~L~~L~~LdLnrN~iriv-e~ltFqgL~Sl~nlklqrN~I~kL~DG~F----y~l~kme~l~L~~N~l~~vn-~g~l 289 (873)
T KOG4194|consen 216 SFKRLPKLESLDLNRNRIRIV-EGLTFQGLPSLQNLKLQRNDISKLDDGAF----YGLEKMEHLNLETNRLQAVN-EGWL 289 (873)
T ss_pred Hhhhcchhhhhhccccceeee-hhhhhcCchhhhhhhhhhcCcccccCcce----eeecccceeecccchhhhhh-cccc
Confidence 45557778888874 333222 1223556667777766655 23444333 23556777888776665542 2344
Q ss_pred hhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhc
Q 003957 573 ESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQG 651 (784)
Q Consensus 573 ~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~ 651 (784)
-+++.|+.|++++| +......+ ...+++|+.|+++. +.++..+-..+ ..++.|++|.|+.|++.. ..+....+
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~-WsftqkL~~LdLs~--N~i~~l~~~sf-~~L~~Le~LnLs~Nsi~~--l~e~af~~ 363 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDS-WSFTQKLKELDLSS--NRITRLDEGSF-RVLSQLEELNLSHNSIDH--LAEGAFVG 363 (873)
T ss_pred cccchhhhhccchhhhheeecch-hhhcccceeEeccc--cccccCChhHH-HHHHHhhhhcccccchHH--HHhhHHHH
Confidence 56777888888877 22222222 23457777777777 55654332221 234477777777776432 22333445
Q ss_pred CCCCcEEeecCCCC---CCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-c
Q 003957 652 WPGLISLHLEECGD---ITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-Y 727 (784)
Q Consensus 652 ~~~L~~L~L~~c~~---i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~ 727 (784)
+.+|+.|+|.+|.. |. ++...+.++++|+.|++.+|.+ . .+...++.+++.|+.|+|.+|..- ++ . |. |
T Consensus 364 lssL~~LdLr~N~ls~~IE-Daa~~f~gl~~LrkL~l~gNql--k-~I~krAfsgl~~LE~LdL~~Naia-SI-q-~nAF 436 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIE-DAAVAFNGLPSLRKLRLTGNQL--K-SIPKRAFSGLEALEHLDLGDNAIA-SI-Q-PNAF 436 (873)
T ss_pred hhhhhhhcCcCCeEEEEEe-cchhhhccchhhhheeecCcee--e-ecchhhhccCcccceecCCCCcce-ee-c-cccc
Confidence 67777777777653 22 2444555677777777777765 3 444556777777777777776555 22 1 22 5
Q ss_pred cCCCCCCEEEecC
Q 003957 728 ADRYSLSTVKITK 740 (784)
Q Consensus 728 ~~~~~L~~L~is~ 740 (784)
..+ .|++|.+..
T Consensus 437 e~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 437 EPM-ELKELVMNS 448 (873)
T ss_pred ccc-hhhhhhhcc
Confidence 555 677776654
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-19 Score=187.75 Aligned_cols=201 Identities=17% Similarity=0.160 Sum_probs=118.3
Q ss_pred CcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccE
Q 003957 525 KLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRK 604 (784)
Q Consensus 525 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~ 604 (784)
..|++|.+++++ +.-..+.+++. ..+|+.|.++...-+...++..+.++.+|..++++.|.-...+..+. .+++|+.
T Consensus 173 ~~LqtL~Ls~NP-L~hfQLrQLPs-mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly-~l~~Lrr 249 (1255)
T KOG0444|consen 173 SMLQTLKLSNNP-LNHFQLRQLPS-MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLY-KLRNLRR 249 (1255)
T ss_pred hhhhhhhcCCCh-hhHHHHhcCcc-chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHh-hhhhhhe
Confidence 344444554442 11122333333 34444455544433333344445566677777777663222233332 3377777
Q ss_pred EEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHH-HhhCCCCCCEE
Q 003957 605 LKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVT-SLFNCIALEDL 683 (784)
Q Consensus 605 L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~-~l~~~~~L~~L 683 (784)
|++++ +.++...+.. ....+|+.|++|.|.... +......+++|+.|.+.+|+ ++-+|++ .++.+.+|+.+
T Consensus 250 LNLS~--N~iteL~~~~--~~W~~lEtLNlSrNQLt~---LP~avcKL~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 250 LNLSG--NKITELNMTE--GEWENLETLNLSRNQLTV---LPDAVCKLTKLTKLYANNNK-LTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred eccCc--CceeeeeccH--HHHhhhhhhccccchhcc---chHHHhhhHHHHHHHhccCc-ccccCCccchhhhhhhHHH
Confidence 77777 6666543321 123477888888877654 22222346777777777655 4444433 34567777777
Q ss_pred EcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCc
Q 003957 684 LLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 684 ~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~ 744 (784)
...+|.+ +..++.+..|+.|+.|.|+.|..+ ++|. +.-++-|+.||++.++.+
T Consensus 322 ~aanN~L----ElVPEglcRC~kL~kL~L~~NrLi----TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 322 HAANNKL----ELVPEGLCRCVKLQKLKLDHNRLI----TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred Hhhcccc----ccCchhhhhhHHHHHhccccccee----echhhhhhcCCcceeeccCCcCc
Confidence 7777766 777777778888888888877776 6777 777778888888877643
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.5e-19 Score=188.10 Aligned_cols=86 Identities=20% Similarity=0.173 Sum_probs=45.3
Q ss_pred CCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCC
Q 003957 626 CSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMP 705 (784)
Q Consensus 626 ~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~ 705 (784)
++.|+.|.+.+|....+++...+. .+.+|+.+...+|. +. --+..+..|++|+.|.|++|.+ -.+++++.-++
T Consensus 290 L~kL~kLy~n~NkL~FeGiPSGIG-KL~~Levf~aanN~-LE-lVPEglcRC~kL~kL~L~~NrL----iTLPeaIHlL~ 362 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPSGIG-KLIQLEVFHAANNK-LE-LVPEGLCRCVKLQKLKLDHNRL----ITLPEAIHLLP 362 (1255)
T ss_pred hHHHHHHHhccCcccccCCccchh-hhhhhHHHHhhccc-cc-cCchhhhhhHHHHHhcccccce----eechhhhhhcC
Confidence 334555555444444333333332 24445555554443 11 1123344566666677766665 55666666667
Q ss_pred CCceecccccccc
Q 003957 706 MLRLVSLDLCDAS 718 (784)
Q Consensus 706 ~L~~L~L~~c~~~ 718 (784)
.|+.|++..|+.+
T Consensus 363 ~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 363 DLKVLDLRENPNL 375 (1255)
T ss_pred CcceeeccCCcCc
Confidence 7777777776666
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.5e-16 Score=190.29 Aligned_cols=310 Identities=18% Similarity=0.219 Sum_probs=199.6
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCCc-cchhhHHHHHhcCCCccE
Q 003957 386 SNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTM-ISGAALAYMVHGNSGLKY 464 (784)
Q Consensus 386 ~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~-i~~~~l~~~~~~l~~L~~ 464 (784)
++|+.|++.+++. ..++.. -...+|+.|+++++.+.......-..++|+.|+|+++. +.... . +..+++|+.
T Consensus 589 ~~Lr~L~~~~~~l---~~lP~~-f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~-ls~l~~Le~ 661 (1153)
T PLN03210 589 PKLRLLRWDKYPL---RCMPSN-FRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP--D-LSMATNLET 661 (1153)
T ss_pred cccEEEEecCCCC---CCCCCc-CCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC--c-cccCCcccE
Confidence 3577777766543 111111 13467777777776654332111124677777777652 32211 1 245677777
Q ss_pred EeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHH
Q 003957 465 LNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALR 544 (784)
Q Consensus 465 L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~ 544 (784)
|++.+|..+.. ++..+..+++|+.|+++++......+... .+++|+.|++++|..+.
T Consensus 662 L~L~~c~~L~~-----------------lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~----- 718 (1153)
T PLN03210 662 LKLSDCSSLVE-----------------LPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLK----- 718 (1153)
T ss_pred EEecCCCCccc-----------------cchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcc-----
Confidence 77777765432 22355667777777775432211111111 46789999999985543
Q ss_pred HhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhH-------HHHhhcCCCCccEEEccCCCCCCChH
Q 003957 545 LLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLS-------ISSFKLPLPNLRKLKLERVTPWMTNN 617 (784)
Q Consensus 545 ~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~-------~~~l~~~~~~L~~L~L~~c~~~l~~~ 617 (784)
.++...++|+.|+++.+.+.. ++..+ .+++|++|.+.++..... ........++|+.|++++| +.+..
T Consensus 719 ~~p~~~~nL~~L~L~~n~i~~--lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n-~~l~~- 793 (1153)
T PLN03210 719 SFPDISTNISWLDLDETAIEE--FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI-PSLVE- 793 (1153)
T ss_pred ccccccCCcCeeecCCCcccc--ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCC-CCccc-
Confidence 233445679999998777654 22212 467888888877521111 1111223479999999997 44432
Q ss_pred HHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHH
Q 003957 618 DLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFI 697 (784)
Q Consensus 618 ~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~ 697 (784)
++..+.++++|+.|++++|..+...+.. .++++|+.|++++|..+... + ...++|+.|++++|.+ ..+
T Consensus 794 -lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~--p--~~~~nL~~L~Ls~n~i----~~i 861 (1153)
T PLN03210 794 -LPSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTF--P--DISTNISDLNLSRTGI----EEV 861 (1153)
T ss_pred -cChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccccc--c--ccccccCEeECCCCCC----ccC
Confidence 3344568999999999999877632211 15889999999999876421 1 1356899999999977 678
Q ss_pred HHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCcC
Q 003957 698 LDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 698 ~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~ 745 (784)
+..+..+++|+.|++.+|+.+++ +|. ...+++|+.+++++|.++.
T Consensus 862 P~si~~l~~L~~L~L~~C~~L~~---l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 862 PWWIEKFSNLSFLDMNGCNNLQR---VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred hHHHhcCCCCCEEECCCCCCcCc---cCcccccccCCCeeecCCCcccc
Confidence 88899999999999999999954 465 7788999999999998765
|
syringae 6; Provisional |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-17 Score=183.15 Aligned_cols=290 Identities=19% Similarity=0.142 Sum_probs=147.7
Q ss_pred hCccccEEEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCC
Q 003957 410 QARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYP 489 (784)
Q Consensus 410 ~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~ 489 (784)
.-++|+.|+.++|.++ .....+...+|+++++++++++... ..+..|++|+.++.... .++.
T Consensus 217 ~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~~lp--~wi~~~~nle~l~~n~N-~l~~-------------- 278 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLSNLP--EWIGACANLEALNANHN-RLVA-------------- 278 (1081)
T ss_pred cCcchheeeeccCcce-eeccccccccceeeecchhhhhcch--HHHHhcccceEecccch-hHHh--------------
Confidence 3456666666666555 2222233457888888888766544 55567888888877543 2221
Q ss_pred chhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCC--CCChHHHHHhhccCCCCcEEEeeeeccChH
Q 003957 490 CADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGG--SLGEDALRLLPTTCPMLELVVLYFQVMSDS 566 (784)
Q Consensus 490 ~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~--~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~ 566 (784)
++..+....+|+.+.+. +....++. .....++|++|++..+. .+.+..+.... ..|+.|..+++.+...
T Consensus 279 ---lp~ri~~~~~L~~l~~~~nel~yip~--~le~~~sL~tLdL~~N~L~~lp~~~l~v~~---~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 279 ---LPLRISRITSLVSLSAAYNELEYIPP--FLEGLKSLRTLDLQSNNLPSLPDNFLAVLN---ASLNTLNVSSNKLSTL 350 (1081)
T ss_pred ---hHHHHhhhhhHHHHHhhhhhhhhCCC--cccccceeeeeeehhccccccchHHHhhhh---HHHHHHhhhhcccccc
Confidence 22334444445555442 22222211 23335566666666551 12221111110 1133333333333221
Q ss_pred HHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHH
Q 003957 567 IIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQ 645 (784)
Q Consensus 567 ~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~ 645 (784)
. ..--...+.|+.|++.+| .+|..+..+... .+|+.|++++ +.+..-.- ....++..|++|+||||...+ +
T Consensus 351 p-~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~-~hLKVLhLsy--NrL~~fpa-s~~~kle~LeeL~LSGNkL~~---L 422 (1081)
T KOG0618|consen 351 P-SYEENNHAALQELYLANNHLTDSCFPVLVNF-KHLKVLHLSY--NRLNSFPA-SKLRKLEELEELNLSGNKLTT---L 422 (1081)
T ss_pred c-cccchhhHHHHHHHHhcCcccccchhhhccc-cceeeeeecc--cccccCCH-HHHhchHHhHHHhcccchhhh---h
Confidence 0 000012234666666666 455555444433 6777777776 44432111 122345567777777776655 2
Q ss_pred HHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcc
Q 003957 646 LIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIP 725 (784)
Q Consensus 646 ~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~ 725 (784)
..-...|+.|+.|...+|.... ++.+..++.|+.+|++.|.+ +...+++.+.. ++|++|+++||.... ++..
T Consensus 423 p~tva~~~~L~tL~ahsN~l~~---fPe~~~l~qL~~lDlS~N~L--~~~~l~~~~p~-p~LkyLdlSGN~~l~--~d~~ 494 (1081)
T KOG0618|consen 423 PDTVANLGRLHTLRAHSNQLLS---FPELAQLPQLKVLDLSCNNL--SEVTLPEALPS-PNLKYLDLSGNTRLV--FDHK 494 (1081)
T ss_pred hHHHHhhhhhHHHhhcCCceee---chhhhhcCcceEEecccchh--hhhhhhhhCCC-cccceeeccCCcccc--cchh
Confidence 2233356777777666554322 22455677777888877754 43333444333 678888888776541 1112
Q ss_pred cccCCCCCCEEEecCC
Q 003957 726 DYADRYSLSTVKITKC 741 (784)
Q Consensus 726 ~~~~~~~L~~L~is~C 741 (784)
.++.++.+...++.-.
T Consensus 495 ~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 495 TLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhHHhhhhhheecccC
Confidence 2666666666666655
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-14 Score=151.04 Aligned_cols=61 Identities=21% Similarity=0.107 Sum_probs=28.9
Q ss_pred CCCcEEeecCCCCCCHHHHHHh----hCCCCCCEEEcccCCCCCChhH---HHHHHhcC-CCCceecccccc
Q 003957 653 PGLISLHLEECGDITAYGVTSL----FNCIALEDLLLRHNGPGIPRDF---ILDAASKM-PMLRLVSLDLCD 716 (784)
Q Consensus 653 ~~L~~L~L~~c~~i~~~~~~~l----~~~~~L~~L~L~~n~~gl~~~~---~~~~l~~l-~~L~~L~L~~c~ 716 (784)
+.|+.|++++|. +++.+...+ ..+++|+.+++++|.+ ++.. ..+.+... +.|++|++.+++
T Consensus 250 ~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 250 ISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKF--GEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCC--cHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 456666665554 443333222 2345666666666644 3221 12223333 456666665543
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.7e-17 Score=179.55 Aligned_cols=106 Identities=18% Similarity=0.155 Sum_probs=57.4
Q ss_pred cceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeecCCccccccccccccCCCcccccccccCCCCC
Q 003957 211 LRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSP 290 (784)
Q Consensus 211 L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 290 (784)
+..|++..+..++ .++..+ +++-+|+.||++++....+| ..++.+
T Consensus 23 ~~~ln~~~N~~l~-~pl~~~-~~~v~L~~l~lsnn~~~~fp---------------------------------~~it~l 67 (1081)
T KOG0618|consen 23 LQILNLRRNSLLS-RPLEFV-EKRVKLKSLDLSNNQISSFP---------------------------------IQITLL 67 (1081)
T ss_pred HHhhhcccccccc-CchHHh-hheeeeEEeeccccccccCC---------------------------------chhhhH
Confidence 6666666643333 233333 34445777777765443332 224556
Q ss_pred CCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCH
Q 003957 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGV 357 (784)
Q Consensus 291 ~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~ 357 (784)
++|+.|+++.|.. .. .+.-.....+|++++|.++. +. .+++-+...++|+.|++++|.++.
T Consensus 68 ~~L~~ln~s~n~i-~~--vp~s~~~~~~l~~lnL~~n~-l~--~lP~~~~~lknl~~LdlS~N~f~~ 128 (1081)
T KOG0618|consen 68 SHLRQLNLSRNYI-RS--VPSSCSNMRNLQYLNLKNNR-LQ--SLPASISELKNLQYLDLSFNHFGP 128 (1081)
T ss_pred HHHhhcccchhhH-hh--Cchhhhhhhcchhheeccch-hh--cCchhHHhhhcccccccchhccCC
Confidence 7777777776632 11 11222335677777776532 21 223334456777788888776665
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=148.45 Aligned_cols=87 Identities=21% Similarity=0.211 Sum_probs=43.2
Q ss_pred CCCccEEEccCCCCCCChHHHHHHHhc----CCCCcEEEecCCCCCChHH--HHHHHhcCCCCcEEeecCCCCCCHHHHH
Q 003957 599 LPNLRKLKLERVTPWMTNNDLVILTQN----CSELVELSLVGCTLLSSDS--QLIISQGWPGLISLHLEECGDITAYGVT 672 (784)
Q Consensus 599 ~~~L~~L~L~~c~~~l~~~~l~~l~~~----~~~L~~L~Ls~c~~~~~~~--~~~~~~~~~~L~~L~L~~c~~i~~~~~~ 672 (784)
+++|++|++++| .+++.++..+... .+.|++|++++|.+..... .......+++|+.+++++|. +++.+..
T Consensus 220 ~~~L~~L~ls~n--~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~ 296 (319)
T cd00116 220 LKSLEVLNLGDN--NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQ 296 (319)
T ss_pred cCCCCEEecCCC--cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHH
Confidence 355555555553 3555444443333 2466666666665443222 11122234566666666655 5544333
Q ss_pred Hh----hCC-CCCCEEEcccC
Q 003957 673 SL----FNC-IALEDLLLRHN 688 (784)
Q Consensus 673 ~l----~~~-~~L~~L~L~~n 688 (784)
.+ ... +.|++|++.++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHhhcCCchhhcccCCC
Confidence 32 122 46666666665
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-14 Score=142.20 Aligned_cols=248 Identities=21% Similarity=0.222 Sum_probs=181.8
Q ss_pred CccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc---cCCcCEEEecCCccchhhHHHHHhcCCCcc
Q 003957 387 NLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS---GSSLEMLDVSDTMISGAALAYMVHGNSGLK 463 (784)
Q Consensus 387 ~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~---~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~ 463 (784)
.-+.+|+.+-+ +....+..+. -.....+.+....+.+..+.... -+.|++|||++..++...+..++..|.+|+
T Consensus 137 lW~~lDl~~r~-i~p~~l~~l~--~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk 213 (419)
T KOG2120|consen 137 LWQTLDLTGRN-IHPDVLGRLL--SRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLK 213 (419)
T ss_pred ceeeeccCCCc-cChhHHHHHH--hCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhh
Confidence 34677776643 3444554442 23455666665555444332222 357999999999999888888888888888
Q ss_pred EEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHH
Q 003957 464 YLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDAL 543 (784)
Q Consensus 464 ~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l 543 (784)
.|.+.|. .+.+...
T Consensus 214 ~lSlEg~------------------------------------------------------------------~LdD~I~ 227 (419)
T KOG2120|consen 214 NLSLEGL------------------------------------------------------------------RLDDPIV 227 (419)
T ss_pred hcccccc------------------------------------------------------------------ccCcHHH
Confidence 8887653 2233344
Q ss_pred HHhhccCCCCcEEEee-eeccChHHHHHHHhhCCCCcEEEecccC--ChhHHHHhhcCCCCccEEEccCCCCCCChHHHH
Q 003957 544 RLLPTTCPMLELVVLY-FQVMSDSIIINILESLRRLQVLAICHCL--GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLV 620 (784)
Q Consensus 544 ~~l~~~~~~L~~L~L~-~~~i~~~~l~~~~~~l~~L~~L~Ls~c~--~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~ 620 (784)
..+++ -.+|+.|+++ |++++..++.-++.+|+.|++|++++|+ .+..-..+...-++|+.|+|+||...+.+..+.
T Consensus 228 ~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 228 NTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred HHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH
Confidence 44554 4568888884 7888888899999999999999999993 333333344555899999999985455666778
Q ss_pred HHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHH
Q 003957 621 ILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDA 700 (784)
Q Consensus 621 ~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~ 700 (784)
.+...||+|.+|||++|..+++.....+ ..++.|++|.++.|..|.+..+..+...|+|.+||+-+| ++|....-.
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~---vsdt~mel~ 382 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC---VSDTTMELL 382 (419)
T ss_pred HHHHhCCceeeeccccccccCchHHHHH-HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc---cCchHHHHH
Confidence 8889999999999999999988665555 469999999999999998887777788999999999887 565555555
Q ss_pred HhcCCCCc
Q 003957 701 ASKMPMLR 708 (784)
Q Consensus 701 l~~l~~L~ 708 (784)
...+++|+
T Consensus 383 ~e~~~~lk 390 (419)
T KOG2120|consen 383 KEMLSHLK 390 (419)
T ss_pred HHhCcccc
Confidence 56667665
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=170.64 Aligned_cols=129 Identities=12% Similarity=0.042 Sum_probs=55.0
Q ss_pred CCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEee-eeccChHHHHHHHhhCCCCc
Q 003957 501 RKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLY-FQVMSDSIIINILESLRRLQ 579 (784)
Q Consensus 501 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~-~~~i~~~~l~~~~~~l~~L~ 579 (784)
++|+.|+++.+......+..+..+++|+.|++++|..+..-. .. ..+++|+.|+++ |+.+.. + ....++|+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP--~~-~~L~sL~~L~Ls~c~~L~~--~---p~~~~nL~ 849 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP--TG-INLESLESLDLSGCSRLRT--F---PDISTNIS 849 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC--CC-CCccccCEEECCCCCcccc--c---cccccccC
Confidence 445555553322211122224445555555555554332210 00 024555555553 333321 1 11124555
Q ss_pred EEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCC
Q 003957 580 VLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLS 641 (784)
Q Consensus 580 ~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~ 641 (784)
.|+++++.....+.++ ..+++|+.|++.+| +.+.. +......+++|+.+++++|..+.
T Consensus 850 ~L~Ls~n~i~~iP~si-~~l~~L~~L~L~~C-~~L~~--l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 850 DLNLSRTGIEEVPWWI-EKFSNLSFLDMNGC-NNLQR--VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred EeECCCCCCccChHHH-hcCCCCCEEECCCC-CCcCc--cCcccccccCCCeeecCCCcccc
Confidence 6666555222222222 23356666666666 44432 22122345566666666665443
|
syringae 6; Provisional |
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.5e-17 Score=163.02 Aligned_cols=110 Identities=18% Similarity=0.121 Sum_probs=70.3
Q ss_pred HhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHh
Q 003957 623 TQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAAS 702 (784)
Q Consensus 623 ~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~ 702 (784)
...+++|+.|++++|..- +.+.+. .++..|+.|+++.+.. . ..+..+.....++.+-.+.|.+ + ...++.+.
T Consensus 431 l~~l~kLt~L~L~NN~Ln-~LP~e~--~~lv~Lq~LnlS~NrF-r-~lP~~~y~lq~lEtllas~nqi--~-~vd~~~l~ 502 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLN-DLPEEM--GSLVRLQTLNLSFNRF-R-MLPECLYELQTLETLLASNNQI--G-SVDPSGLK 502 (565)
T ss_pred HHhhhcceeeecccchhh-hcchhh--hhhhhhheeccccccc-c-cchHHHhhHHHHHHHHhccccc--c-ccChHHhh
Confidence 345667778888776432 222222 2355677888777642 1 1122222344455555555654 3 33344578
Q ss_pred cCCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCc
Q 003957 703 KMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 703 ~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~ 744 (784)
++.+|..|++++|... .+|+ ++++.+|++|++++++..
T Consensus 503 nm~nL~tLDL~nNdlq----~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 503 NMRNLTTLDLQNNDLQ----QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhcceeccCCCchh----hCChhhccccceeEEEecCCccC
Confidence 8899999999988777 6788 999999999999999854
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-16 Score=158.99 Aligned_cols=464 Identities=16% Similarity=0.076 Sum_probs=238.4
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
.++.+..++++++........+. ....++.|+.++ +++. .-++++. ..+.|..|+.+++.-..+++....
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig----~l~~l~~l~vs~-n~ls-~lp~~i~-s~~~l~~l~~s~n~~~el~~~i~~--- 135 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIG----ELEALKSLNVSH-NKLS-ELPEQIG-SLISLVKLDCSSNELKELPDSIGR--- 135 (565)
T ss_pred cccceeEEEeccchhhhCCHHHH----HHHHHHHhhccc-chHh-hccHHHh-hhhhhhhhhccccceeecCchHHH---
Confidence 56677788888776555544432 334566777777 4443 2233443 666777777776653333322100
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLI 339 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~ 339 (784)
...-.+........++.|+....+.+|..|++.++.. +......+ +.+.|++|+...+ .++ .++.-+
T Consensus 136 -------~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i--~m~~L~~ld~~~N-~L~--tlP~~l 202 (565)
T KOG0472|consen 136 -------LLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKL-KALPENHI--AMKRLKHLDCNSN-LLE--TLPPEL 202 (565)
T ss_pred -------HhhhhhhhccccccccCchHHHHHHHHHHhhccccch-hhCCHHHH--HHHHHHhcccchh-hhh--cCChhh
Confidence 0000000011111112222233344444444444421 11111111 1334555544331 111 111222
Q ss_pred HhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHH-HHHhCccccEEE
Q 003957 340 RRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLE-LMCQARKLKSLC 418 (784)
Q Consensus 340 ~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~-l~~~~~~L~~L~ 418 (784)
+.+.+|.-|++..|.+.. +| .+..|..|++|+++.++. ..++. ..+.++.+..|+
T Consensus 203 g~l~~L~~LyL~~Nki~~--------------------lP-ef~gcs~L~Elh~g~N~i---~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRF--------------------LP-EFPGCSLLKELHVGENQI---EMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred cchhhhHHHHhhhccccc--------------------CC-CCCccHHHHHHHhcccHH---HhhHHHHhcccccceeee
Confidence 333444445555544433 44 347788888888877654 22332 346889999999
Q ss_pred ecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhh
Q 003957 419 LSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELG 498 (784)
Q Consensus 419 Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 498 (784)
+..|.+.....+.....+|++||+|+|.++.... -..++ .|+.|.+.|.+--+- ....-.-+++++...+.
T Consensus 259 LRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~--sLgnl-hL~~L~leGNPlrTi------Rr~ii~~gT~~vLKyLr 329 (565)
T KOG0472|consen 259 LRDNKLKEVPDEICLLRSLERLDLSNNDISSLPY--SLGNL-HLKFLALEGNPLRTI------RREIISKGTQEVLKYLR 329 (565)
T ss_pred ccccccccCchHHHHhhhhhhhcccCCccccCCc--ccccc-eeeehhhcCCchHHH------HHHHHcccHHHHHHHHH
Confidence 9999988776665556889999999998875432 22344 778888777642110 00000000122211111
Q ss_pred cCCCccEEEecc--c--cCccc-Hhhhh---hhcCcccEEEecCC--CCCChHHHHHhhccCCCCcEEEeeeeccChHHH
Q 003957 499 RTRKLEEIVLGW--G--FSFLS-LEVLK---PAIKLLHSITVGLG--GSLGEDALRLLPTTCPMLELVVLYFQVMSDSII 568 (784)
Q Consensus 499 ~l~~L~~L~L~~--~--~~~~~-~~~~~---~~l~~L~~L~L~~~--~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l 568 (784)
. +.+.=.++. + .+..+ ....+ ....+.+.|++++- +.++++.+.+... .-....+++.|.+.. +
T Consensus 330 s--~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~--~~Vt~VnfskNqL~e--l 403 (565)
T KOG0472|consen 330 S--KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKS--EIVTSVNFSKNQLCE--L 403 (565)
T ss_pred H--hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhh--cceEEEecccchHhh--h
Confidence 1 000000000 0 00000 00011 11234566666543 3355555554432 124455666555443 2
Q ss_pred HHHHhhCC-CCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHH
Q 003957 569 INILESLR-RLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLI 647 (784)
Q Consensus 569 ~~~~~~l~-~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~ 647 (784)
+.-+..++ ....+.++.+..+.... +...+++|..|++++ +.+.+.... ...+..|+.|+++.|+.-. ...
T Consensus 404 Pk~L~~lkelvT~l~lsnn~isfv~~-~l~~l~kLt~L~L~N--N~Ln~LP~e--~~~lv~Lq~LnlS~NrFr~---lP~ 475 (565)
T KOG0472|consen 404 PKRLVELKELVTDLVLSNNKISFVPL-ELSQLQKLTFLDLSN--NLLNDLPEE--MGSLVRLQTLNLSFNRFRM---LPE 475 (565)
T ss_pred hhhhHHHHHHHHHHHhhcCccccchH-HHHhhhcceeeeccc--chhhhcchh--hhhhhhhheeccccccccc---chH
Confidence 22122222 22344555553333222 333458899999988 556543333 2345579999999986433 111
Q ss_pred HHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 648 ISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 648 ~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
.......|+. .+..++++....+..++++.+|..||+..|.+ ..+|..++++.+|+.|.+++|+.-
T Consensus 476 ~~y~lq~lEt-llas~nqi~~vd~~~l~nm~nL~tLDL~nNdl----q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 476 CLYELQTLET-LLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL----QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhHHHHHH-HHhccccccccChHHhhhhhhcceeccCCCch----hhCChhhccccceeEEEecCCccC
Confidence 1111222333 34454557776677778899999999999987 899999999999999999999876
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-13 Score=135.21 Aligned_cols=138 Identities=19% Similarity=0.246 Sum_probs=106.1
Q ss_pred CCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCC
Q 003957 318 SLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCN 397 (784)
Q Consensus 318 ~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 397 (784)
.|++++|+. ..++...+..++..|.+|+.|.+.++.+.+.-...+ +.-.+|+.|+|+.|.
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-------------------AkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-------------------AKNSNLVRLNLSMCS 245 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-------------------hccccceeecccccc
Confidence 588999987 677888888889999999999999999888655443 567789999999999
Q ss_pred CCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc---cCCcCEEEecCC--ccchhhHHHHHhcCCCccEEeccCCCc
Q 003957 398 GVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS---GSSLEMLDVSDT--MISGAALAYMVHGNSGLKYLNARGCKN 472 (784)
Q Consensus 398 ~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~---~~~L~~L~Ls~~--~i~~~~l~~~~~~l~~L~~L~L~~c~~ 472 (784)
+++..++.-++..|+.|..|+|+||.++...+...+ +++|+.|+|+|+ ++...-+..+.++||+|.+|++++|..
T Consensus 246 G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 246 GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred ccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 999999999999999999999999976655444433 567777777776 344444555566667777777666655
Q ss_pred ccc
Q 003957 473 LFQ 475 (784)
Q Consensus 473 l~~ 475 (784)
+++
T Consensus 326 l~~ 328 (419)
T KOG2120|consen 326 LKN 328 (419)
T ss_pred cCc
Confidence 543
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=124.22 Aligned_cols=100 Identities=17% Similarity=0.241 Sum_probs=55.2
Q ss_pred HHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCC--CCCHHHHHH---H---
Q 003957 336 SNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCN--GVDGMYLLE---L--- 407 (784)
Q Consensus 336 ~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~--~l~~~~l~~---l--- 407 (784)
.........++.+++++|.++......++..+ ...++|+..++++.- ...+..... +
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L---------------~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~a 87 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVL---------------ASKKELREVNLSDMFTGRLKDEIPEALKMLSKA 87 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHH---------------hhcccceeeehHhhhcCCcHHHHHHHHHHHHHH
Confidence 33444557788888888888888777765433 445577777776542 111111111 1
Q ss_pred HHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCC
Q 003957 408 MCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 408 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
...+|+|+.|+||+|.+...++ .++..+++.+.+|++|.+.+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~--------------------~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGI--------------------RGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred HhcCCceeEeeccccccCccch--------------------HHHHHHHHhccCHHHHhhhcC
Confidence 1234444444444444433332 234455566777777777666
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-11 Score=140.26 Aligned_cols=158 Identities=22% Similarity=0.342 Sum_probs=93.2
Q ss_pred CccEEecCCCCC-CChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCC--CCCHHHHHHhhccCC
Q 003957 292 KITKLTLEGRSD-MCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDT--SFGVYSIRALCSEVP 368 (784)
Q Consensus 292 ~L~~L~Ls~~~~-l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~--~i~~~~l~~l~~~l~ 368 (784)
.++.+....+.. +.......+...++.|+.+.+.+|..+++.++..+...|+.|+.|+++++ .+...+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------- 234 (482)
T KOG1947|consen 162 NLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL------- 234 (482)
T ss_pred HHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH-------
Confidence 344444443332 33444555666688888888888888888777788888888888888773 22221111
Q ss_pred ccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCc-Cchhhhhhcc--cCCcCEEEecCC
Q 003957 369 YCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQ-LADKALYNFS--GSSLEMLDVSDT 445 (784)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~-l~~~~~~~l~--~~~L~~L~Ls~~ 445 (784)
.......+++|+.|++++|..++|.++..+...|++|+.|.+.+|. +++.++..+. ++.|++|++++|
T Consensus 235 ---------~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 235 ---------LLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred ---------hhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 0112355677888888887777777777776667777776655554 4544444443 344444444444
Q ss_pred -ccchhhHHHHHhcCCCccEE
Q 003957 446 -MISGAALAYMVHGNSGLKYL 465 (784)
Q Consensus 446 -~i~~~~l~~~~~~l~~L~~L 465 (784)
.+++.++..+...|++|+.|
T Consensus 306 ~~~~d~~l~~~~~~c~~l~~l 326 (482)
T KOG1947|consen 306 HGLTDSGLEALLKNCPNLREL 326 (482)
T ss_pred ccchHHHHHHHHHhCcchhhh
Confidence 23344444444444444443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-11 Score=135.06 Aligned_cols=180 Identities=23% Similarity=0.349 Sum_probs=98.7
Q ss_pred hcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC--cCchhh--hhhcc--cCCcCEEEecCCc-cchhhHHHH
Q 003957 383 TLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT--QLADKA--LYNFS--GSSLEMLDVSDTM-ISGAALAYM 455 (784)
Q Consensus 383 ~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~--~l~~~~--~~~l~--~~~L~~L~Ls~~~-i~~~~l~~~ 455 (784)
..++.|+.+.+.+|..+++..+..+...+++|+.|+++.+ .....+ ...+. +.+|+.|+++++. +++.++..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 4477888888888888877776666677888888887763 111111 01111 3445555555543 555555555
Q ss_pred HhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCC
Q 003957 456 VHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLG 535 (784)
Q Consensus 456 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~ 535 (784)
...|++|++|.+.+|.
T Consensus 265 ~~~c~~L~~L~l~~c~---------------------------------------------------------------- 280 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCS---------------------------------------------------------------- 280 (482)
T ss_pred HhhCCCcceEccCCCC----------------------------------------------------------------
Confidence 4445555555544443
Q ss_pred CCCChHHHHHhhccCCCCcEEEee-eeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCC
Q 003957 536 GSLGEDALRLLPTTCPMLELVVLY-FQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWM 614 (784)
Q Consensus 536 ~~l~~~~l~~l~~~~~~L~~L~L~-~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l 614 (784)
.+++.++..+...|++|++|+++ |..+++.++..+..+|++|+.|.+..+.. |+.++.+.+.+| ...
T Consensus 281 -~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~l~~~~l~~~-~~~ 348 (482)
T KOG1947|consen 281 -NLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CPSLTDLSLSGL-LTL 348 (482)
T ss_pred -ccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------CccHHHHHHHHh-hcc
Confidence 34445555666666666666663 55556666666666666666655443311 344444555444 222
Q ss_pred C-hHHHHHHHhcCCCCcEEEecCCC
Q 003957 615 T-NNDLVILTQNCSELVELSLVGCT 638 (784)
Q Consensus 615 ~-~~~l~~l~~~~~~L~~L~Ls~c~ 638 (784)
. +........+|+.++.+.+..|.
T Consensus 349 ~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 349 TSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred CchhHhHHHHhcCCCcchhhhhhhh
Confidence 2 23333444555566666655555
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.1e-10 Score=113.25 Aligned_cols=114 Identities=24% Similarity=0.311 Sum_probs=53.6
Q ss_pred CCCccEEEccCCCCCCChHHHH---HHHhcCCCCcEEEecCCCCCChHH--HHHHHhcCCCCcEEeecCCCCCCHHHHHH
Q 003957 599 LPNLRKLKLERVTPWMTNNDLV---ILTQNCSELVELSLVGCTLLSSDS--QLIISQGWPGLISLHLEECGDITAYGVTS 673 (784)
Q Consensus 599 ~~~L~~L~L~~c~~~l~~~~l~---~l~~~~~~L~~L~Ls~c~~~~~~~--~~~~~~~~~~L~~L~L~~c~~i~~~~~~~ 673 (784)
.|.|+.+++.. +.|..+++. .-+..|++|+.||+..|-....++ +......|+.|+.|++.+|. +...|...
T Consensus 184 ~~~leevr~~q--N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a 260 (382)
T KOG1909|consen 184 HPTLEEVRLSQ--NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIA 260 (382)
T ss_pred ccccceEEEec--ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHH
Confidence 35555555555 344444332 222345555555555554443322 22223345556666666665 33333333
Q ss_pred h----h-CCCCCCEEEcccCCCCCChhHHH---HHHhcCCCCceeccccccc
Q 003957 674 L----F-NCIALEDLLLRHNGPGIPRDFIL---DAASKMPMLRLVSLDLCDA 717 (784)
Q Consensus 674 l----~-~~~~L~~L~L~~n~~gl~~~~~~---~~l~~l~~L~~L~L~~c~~ 717 (784)
+ . ..|.|+.|++.+|.+ ..+... ..+...|.|+.|+|++|..
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeI--t~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEI--TRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchh--HHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3 1 355666666666643 222211 1133456666666666655
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.5e-10 Score=130.04 Aligned_cols=92 Identities=18% Similarity=0.124 Sum_probs=58.9
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT 422 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~ 422 (784)
.+-..|+++++.++. +|..+ .++|+.|++.+|... .++ ...++|+.|++++|
T Consensus 201 ~~~~~LdLs~~~Lts--------------------LP~~l--~~~L~~L~L~~N~Lt---~LP---~lp~~Lk~LdLs~N 252 (788)
T PRK15387 201 NGNAVLNVGESGLTT--------------------LPDCL--PAHITTLVIPDNNLT---SLP---ALPPELRTLEVSGN 252 (788)
T ss_pred CCCcEEEcCCCCCCc--------------------CCcch--hcCCCEEEccCCcCC---CCC---CCCCCCcEEEecCC
Confidence 567788888887764 33322 247888888876542 122 23578888888888
Q ss_pred cCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCC
Q 003957 423 QLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 423 ~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
.++.... + .++|+.|++++|.++... . ...+|+.|++.++
T Consensus 253 ~LtsLP~--l-p~sL~~L~Ls~N~L~~Lp--~---lp~~L~~L~Ls~N 292 (788)
T PRK15387 253 QLTSLPV--L-PPGLLELSIFSNPLTHLP--A---LPSGLCKLWIFGN 292 (788)
T ss_pred ccCcccC--c-ccccceeeccCCchhhhh--h---chhhcCEEECcCC
Confidence 7775431 1 367888888888765322 1 2256777877665
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.8e-10 Score=128.08 Aligned_cols=256 Identities=18% Similarity=0.094 Sum_probs=139.1
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEE
Q 003957 386 SNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYL 465 (784)
Q Consensus 386 ~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L 465 (784)
.+-..|+++++.. + .++.- -.++|+.|++.+|.++.... ..++|++|++++|+++... ...++|+.|
T Consensus 201 ~~~~~LdLs~~~L-t--sLP~~--l~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP-----~lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGL-T--TLPDC--LPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLP-----VLPPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCC-C--cCCcc--hhcCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCccc-----Cccccccee
Confidence 3466788887744 2 22221 12478889998887775431 1478999999988776432 123678888
Q ss_pred eccCCCccccccccccccccCCCCchhhHHhhhc-CCCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChHHH
Q 003957 466 NARGCKNLFQQESNGRGIEFSSYPCADLFAELGR-TRKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDAL 543 (784)
Q Consensus 466 ~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l 543 (784)
++.++. ++. +.. ...|+.|++ ++.+...+. ..++|+.|+++++ .+.
T Consensus 268 ~Ls~N~-L~~---------------------Lp~lp~~L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS~N-~L~---- 315 (788)
T PRK15387 268 SIFSNP-LTH---------------------LPALPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDN-QLA---- 315 (788)
T ss_pred eccCCc-hhh---------------------hhhchhhcCEEECcCCccccccc-----cccccceeECCCC-ccc----
Confidence 887652 221 111 134666777 333332211 2346777777765 222
Q ss_pred HHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHH
Q 003957 544 RLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILT 623 (784)
Q Consensus 544 ~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~ 623 (784)
.++...++|+.|+++.|.++. ++. ...+|+.|++++|.-.. +....++|+.|++.+ +.++. ++.
T Consensus 316 -~Lp~lp~~L~~L~Ls~N~L~~--LP~---lp~~Lq~LdLS~N~Ls~----LP~lp~~L~~L~Ls~--N~L~~--LP~-- 379 (788)
T PRK15387 316 -SLPALPSELCKLWAYNNQLTS--LPT---LPSGLQELSVSDNQLAS----LPTLPSELYKLWAYN--NRLTS--LPA-- 379 (788)
T ss_pred -cCCCCcccccccccccCcccc--ccc---cccccceEecCCCccCC----CCCCCcccceehhhc--ccccc--Ccc--
Confidence 122223456667776666553 221 11367777777762111 111124666676666 44542 221
Q ss_pred hcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhc
Q 003957 624 QNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASK 703 (784)
Q Consensus 624 ~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~ 703 (784)
...+|+.|++++|.+.. .. ...++|+.|++++|. ++.. +. ...+|+.|++++|.+ ..+++.+..
T Consensus 380 -l~~~L~~LdLs~N~Lt~---LP---~l~s~L~~LdLS~N~-LssI--P~--l~~~L~~L~Ls~NqL----t~LP~sl~~ 443 (788)
T PRK15387 380 -LPSGLKELIVSGNRLTS---LP---VLPSELKELMVSGNR-LTSL--PM--LPSGLLSLSVYRNQL----TRLPESLIH 443 (788)
T ss_pred -cccccceEEecCCcccC---CC---CcccCCCEEEccCCc-CCCC--Cc--chhhhhhhhhccCcc----cccChHHhh
Confidence 12367777777765442 00 113457777777765 3321 11 123566677777765 456666666
Q ss_pred CCCCceecccccccc
Q 003957 704 MPMLRLVSLDLCDAS 718 (784)
Q Consensus 704 l~~L~~L~L~~c~~~ 718 (784)
+++|+.|++++|+..
T Consensus 444 L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 444 LSSETTVNLEGNPLS 458 (788)
T ss_pred ccCCCeEECCCCCCC
Confidence 777777777776654
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-10 Score=120.79 Aligned_cols=163 Identities=17% Similarity=0.135 Sum_probs=75.4
Q ss_pred cCCCCcEEEeeeeccCh-HHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcC
Q 003957 549 TCPMLELVVLYFQVMSD-SIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNC 626 (784)
Q Consensus 549 ~~~~L~~L~L~~~~i~~-~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~ 626 (784)
.||+++.|+++.|-+.. ..+..+++.+|+|+.|+++.|. ....-......+++|+.|.++.| .++...+......|
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~C--Gls~k~V~~~~~~f 221 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSC--GLSWKDVQWILLTF 221 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccC--CCCHHHHHHHHHhC
Confidence 35555555555443332 2244455555566666555551 10000111113355666666665 35555555555556
Q ss_pred CCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHH-----H
Q 003957 627 SELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDA-----A 701 (784)
Q Consensus 627 ~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~-----l 701 (784)
|+|+.|.+.+|..+.... .-..-+..|+.|+|++++.++-......+.+|.|+.|+++.|++ ++-..+++ .
T Consensus 222 Psl~~L~L~~N~~~~~~~--~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi--~si~~~d~~s~~kt 297 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKA--TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI--ASIAEPDVESLDKT 297 (505)
T ss_pred CcHHHhhhhcccccceec--chhhhhhHHhhccccCCcccccccccccccccchhhhhccccCc--chhcCCCccchhhh
Confidence 666666666553221110 00111334556666665555444333444555666666655532 21112222 3
Q ss_pred hcCCCCceeccccccc
Q 003957 702 SKMPMLRLVSLDLCDA 717 (784)
Q Consensus 702 ~~l~~L~~L~L~~c~~ 717 (784)
..+++|+.|.+..|+.
T Consensus 298 ~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 298 HTFPKLEYLNISENNI 313 (505)
T ss_pred cccccceeeecccCcc
Confidence 4455566666655544
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.3e-10 Score=112.72 Aligned_cols=270 Identities=20% Similarity=0.182 Sum_probs=146.6
Q ss_pred cccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCch
Q 003957 413 KLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCA 491 (784)
Q Consensus 413 ~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~ 491 (784)
.-..++|..|.|+..+..+|. .++|++|||++|+|+..+..++ +++++|..|-+.+...|++..-.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF-~GL~~l~~Lvlyg~NkI~~l~k~------------ 134 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAF-KGLASLLSLVLYGNNKITDLPKG------------ 134 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhh-hhhHhhhHHHhhcCCchhhhhhh------------
Confidence 345566666777766666666 5677777777777776666555 57777777776665566653311
Q ss_pred hhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecC--CCCCChHHHHHhhccCCCCcEEEeeeeccChHHHH
Q 003957 492 DLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGL--GGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIII 569 (784)
Q Consensus 492 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~--~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~ 569 (784)
. +.++.+|+.|.+.. +.-+..+.+.. +++|..|.+..|.+... -.
T Consensus 135 -~---------------------------F~gL~slqrLllNan~i~Cir~~al~d----L~~l~lLslyDn~~q~i-~~ 181 (498)
T KOG4237|consen 135 -A---------------------------FGGLSSLQRLLLNANHINCIRQDALRD----LPSLSLLSLYDNKIQSI-CK 181 (498)
T ss_pred -H---------------------------hhhHHHHHHHhcChhhhcchhHHHHHH----hhhcchhcccchhhhhh-cc
Confidence 1 22222333332222 22233333433 44566666654443321 11
Q ss_pred HHHhhCCCCcEEEecccC--ChhHHHHhhc----------CCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEE--Ee-
Q 003957 570 NILESLRRLQVLAICHCL--GDLSISSFKL----------PLPNLRKLKLERVTPWMTNNDLVILTQNCSELVEL--SL- 634 (784)
Q Consensus 570 ~~~~~l~~L~~L~Ls~c~--~~~~~~~l~~----------~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L--~L- 634 (784)
..++++..++.+++..+. .+-.+...+. .........+.+ ..+....-..+. | +++.+ .+
T Consensus 182 ~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~--~Ri~q~~a~kf~--c-~~esl~s~~~ 256 (498)
T KOG4237|consen 182 GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYY--KRINQEDARKFL--C-SLESLPSRLS 256 (498)
T ss_pred ccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHH--HHhcccchhhhh--h-hHHhHHHhhc
Confidence 134556677777776551 1111111110 000011111111 001100000111 1 12222 12
Q ss_pred cCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHH-HHhcCCCCceeccc
Q 003957 635 VGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILD-AASKMPMLRLVSLD 713 (784)
Q Consensus 635 s~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~-~l~~l~~L~~L~L~ 713 (784)
+.|... .........++++|+.|+|++|. ++.....+|.+...+++|.|..|.+ +.+.+ ++.++..|+.|+|.
T Consensus 257 ~~d~~d-~~cP~~cf~~L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~N~l----~~v~~~~f~~ls~L~tL~L~ 330 (498)
T KOG4237|consen 257 SEDFPD-SICPAKCFKKLPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTRNKL----EFVSSGMFQGLSGLKTLSLY 330 (498)
T ss_pred cccCcC-CcChHHHHhhcccceEeccCCCc-cchhhhhhhcchhhhhhhhcCcchH----HHHHHHhhhccccceeeeec
Confidence 223222 22333345678999999998866 8877777888888899999999876 55544 47888999999999
Q ss_pred cccccCCCCCccc-ccCCCCCCEEEecCCC
Q 003957 714 LCDASDGNFEIPD-YADRYSLSTVKITKCK 742 (784)
Q Consensus 714 ~c~~~~~~~~l~~-~~~~~~L~~L~is~C~ 742 (784)
+|+..+- .|. |..+.+|.+|.+-.++
T Consensus 331 ~N~it~~---~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 331 DNQITTV---APGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred CCeeEEE---ecccccccceeeeeehccCc
Confidence 8887731 233 8888888888887654
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-09 Score=111.53 Aligned_cols=136 Identities=14% Similarity=0.095 Sum_probs=78.9
Q ss_pred hcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhh--hcccCCcCEEEecCCccchhhHHHHHhcCC
Q 003957 383 TLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALY--NFSGSSLEMLDVSDTMISGAALAYMVHGNS 460 (784)
Q Consensus 383 ~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~--~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~ 460 (784)
..|++++.|+|+++-.-....+..++.++|+|+.|+++.|.+....-. ....++|+.|.|+.|+++......+...+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 445566666666554433344555567777777777777654322111 112578888889989888888888888889
Q ss_pred CccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEe-ccccCcccHhhhhhhcCcccEEEecCC
Q 003957 461 GLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLG 535 (784)
Q Consensus 461 ~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~ 535 (784)
+|+.|.+.....+.-... .-..++.|++|+| ++.+-+.........++.|..|+++.+
T Consensus 223 sl~~L~L~~N~~~~~~~~-----------------~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKAT-----------------STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred cHHHhhhhcccccceecc-----------------hhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 999998877643322111 1111345666666 333333333333444555555555554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.9e-08 Score=114.83 Aligned_cols=164 Identities=16% Similarity=0.106 Sum_probs=80.8
Q ss_pred cccEEEecCCCCCChHHHHHhhc-cCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccE
Q 003957 526 LLHSITVGLGGSLGEDALRLLPT-TCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRK 604 (784)
Q Consensus 526 ~L~~L~L~~~~~l~~~~l~~l~~-~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~ 604 (784)
+|+.|+++++ .+.. ++. .+++|+.|+++.|.++.. +..+ .++|+.|++++|.-...... ..++|+.
T Consensus 263 ~L~~L~Ls~N-~L~~-----LP~~l~~sL~~L~Ls~N~Lt~L--P~~l--p~sL~~L~Ls~N~Lt~LP~~---l~~sL~~ 329 (754)
T PRK15370 263 ALQSLDLFHN-KISC-----LPENLPEELRYLSVYDNSIRTL--PAHL--PSGITHLNVQSNSLTALPET---LPPGLKT 329 (754)
T ss_pred CCCEEECcCC-ccCc-----cccccCCCCcEEECCCCccccC--cccc--hhhHHHHHhcCCccccCCcc---cccccee
Confidence 5677777655 3321 111 134677777776666542 1111 12566777776621111111 1256777
Q ss_pred EEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEE
Q 003957 605 LKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLL 684 (784)
Q Consensus 605 L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~ 684 (784)
|++++| .++. +... -+++|+.|++++|.+.. ....+ .++|+.|+|++|. ++... ..+ ...|+.|+
T Consensus 330 L~Ls~N--~Lt~--LP~~--l~~sL~~L~Ls~N~L~~--LP~~l---p~~L~~LdLs~N~-Lt~LP-~~l--~~sL~~Ld 394 (754)
T PRK15370 330 LEAGEN--ALTS--LPAS--LPPELQVLDVSKNQITV--LPETL---PPTITTLDVSRNA-LTNLP-ENL--PAALQIMQ 394 (754)
T ss_pred ccccCC--cccc--CChh--hcCcccEEECCCCCCCc--CChhh---cCCcCEEECCCCc-CCCCC-HhH--HHHHHHHh
Confidence 777774 3432 1111 12567777777776442 11111 2567777777765 33211 111 12466677
Q ss_pred cccCCC-CCChhHHHHHHhcCCCCceecccccccc
Q 003957 685 LRHNGP-GIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 685 L~~n~~-gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+++|.+ +++ ..++.....++++..|++.+|+..
T Consensus 395 Ls~N~L~~LP-~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 395 ASRNNLVRLP-ESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hccCCcccCc-hhHHHHhhcCCCccEEEeeCCCcc
Confidence 777654 011 123333444566677777766654
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.3e-09 Score=107.27 Aligned_cols=274 Identities=19% Similarity=0.129 Sum_probs=142.1
Q ss_pred CccEEEecCCCC--CCHHHHHHHHHhCccccEEEecCCcCchhhhhhccc-CCcCEEEecC-CccchhhHHHHHhcCCCc
Q 003957 387 NLQMLHMACCNG--VDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSG-SSLEMLDVSD-TMISGAALAYMVHGNSGL 462 (784)
Q Consensus 387 ~L~~L~L~~c~~--l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~-~~L~~L~Ls~-~~i~~~~l~~~~~~l~~L 462 (784)
.-..++|..+.. +.+. .++.+++|+.|+|++|.|+.++..+|.+ .+|..|-+.+ |+|++.....+ .++..|
T Consensus 68 ~tveirLdqN~I~~iP~~----aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F-~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPG----AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF-GGLSSL 142 (498)
T ss_pred cceEEEeccCCcccCChh----hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh-hhHHHH
Confidence 567788877654 2222 2378899999999999999999999884 6666665555 78877655444 577777
Q ss_pred cEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChH
Q 003957 463 KYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGED 541 (784)
Q Consensus 463 ~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 541 (784)
+.|.+.-+ ++.-. -+ ..+..++.|..|.+ .+.+..+.. ..+..+.+++++.+..++.+.+-
T Consensus 143 qrLllNan-~i~Ci-------------r~---~al~dL~~l~lLslyDn~~q~i~~-~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 143 QRLLLNAN-HINCI-------------RQ---DALRDLPSLSLLSLYDNKIQSICK-GTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred HHHhcChh-hhcch-------------hH---HHHHHhhhcchhcccchhhhhhcc-ccccchhccchHhhhcCcccccc
Confidence 77765332 11100 01 23444555666666 222222211 12344556666666555433322
Q ss_pred HHHHhhcc----------CCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCC
Q 003957 542 ALRLLPTT----------CPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERV 610 (784)
Q Consensus 542 ~l~~l~~~----------~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c 610 (784)
.+..++.. ........+....+.+..-..+......+..=..+.| .....+..-+..+|+|++|++++
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn- 283 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN- 283 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-
Confidence 22221110 0001111111112222111222111112211112233 22222333344557777777777
Q ss_pred CCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCC
Q 003957 611 TPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNG 689 (784)
Q Consensus 611 ~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~ 689 (784)
++++...- ..+.....+++|.|..|.+-. +...+..++..|+.|+|++|+ |+-..+..|.....|..|++-.|.
T Consensus 284 -N~i~~i~~-~aFe~~a~l~eL~L~~N~l~~--v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 284 -NKITRIED-GAFEGAAELQELYLTRNKLEF--VSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred -Cccchhhh-hhhcchhhhhhhhcCcchHHH--HHHHhhhccccceeeeecCCe-eEEEecccccccceeeeeehccCc
Confidence 56654322 233345567777777776543 334455667777777777765 665556666666677777766553
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.6e-07 Score=106.86 Aligned_cols=246 Identities=12% Similarity=0.043 Sum_probs=134.5
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT 422 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~ 422 (784)
.+...|+++++.++. +|.. ..+.|+.|+|++|.. + .++. ...++|+.|++++|
T Consensus 178 ~~~~~L~L~~~~Lts--------------------LP~~--Ip~~L~~L~Ls~N~L-t--sLP~--~l~~nL~~L~Ls~N 230 (754)
T PRK15370 178 NNKTELRLKILGLTT--------------------IPAC--IPEQITTLILDNNEL-K--SLPE--NLQGNIKTLYANSN 230 (754)
T ss_pred cCceEEEeCCCCcCc--------------------CCcc--cccCCcEEEecCCCC-C--cCCh--hhccCCCEEECCCC
Confidence 467788888876664 3321 134788888888754 2 2222 12357888888888
Q ss_pred cCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCC
Q 003957 423 QLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRK 502 (784)
Q Consensus 423 ~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 502 (784)
.++.... .+ ..+|+.|+|++|.+..... .+ ..+|+.|+++++ .++... ..+
T Consensus 231 ~LtsLP~-~l-~~~L~~L~Ls~N~L~~LP~-~l---~s~L~~L~Ls~N-~L~~LP-----------------~~l----- 281 (754)
T PRK15370 231 QLTSIPA-TL-PDTIQEMELSINRITELPE-RL---PSALQSLDLFHN-KISCLP-----------------ENL----- 281 (754)
T ss_pred ccccCCh-hh-hccccEEECcCCccCcCCh-hH---hCCCCEEECcCC-ccCccc-----------------ccc-----
Confidence 7664321 11 3578888888887653221 11 146778877543 333211 000
Q ss_pred ccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhcc-CCCCcEEEeeeeccChHHHHHHHhhCCCCcEE
Q 003957 503 LEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTT-CPMLELVVLYFQVMSDSIIINILESLRRLQVL 581 (784)
Q Consensus 503 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~-~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L 581 (784)
..+|+.|++++| .++. ++.. .++|+.|+++.|.++.. +.. ..++|+.|
T Consensus 282 ---------------------~~sL~~L~Ls~N-~Lt~-----LP~~lp~sL~~L~Ls~N~Lt~L--P~~--l~~sL~~L 330 (754)
T PRK15370 282 ---------------------PEELRYLSVYDN-SIRT-----LPAHLPSGITHLNVQSNSLTAL--PET--LPPGLKTL 330 (754)
T ss_pred ---------------------CCCCcEEECCCC-cccc-----CcccchhhHHHHHhcCCccccC--Ccc--ccccceec
Confidence 124555555554 2211 1111 13466666666655531 111 12467777
Q ss_pred EecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeec
Q 003957 582 AICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLE 661 (784)
Q Consensus 582 ~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~ 661 (784)
++++|.-......+ .++|+.|+++++ .++.. +... .++|+.|++++|.+.. ....+. +.|+.|+++
T Consensus 331 ~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N--~L~~L--P~~l--p~~L~~LdLs~N~Lt~--LP~~l~---~sL~~LdLs 396 (754)
T PRK15370 331 EAGENALTSLPASL---PPELQVLDVSKN--QITVL--PETL--PPTITTLDVSRNALTN--LPENLP---AALQIMQAS 396 (754)
T ss_pred cccCCccccCChhh---cCcccEEECCCC--CCCcC--Chhh--cCCcCEEECCCCcCCC--CCHhHH---HHHHHHhhc
Confidence 77777211111112 267888888884 45421 1111 2578888888887653 111221 258888888
Q ss_pred CCCCCCH--HHHHHh-hCCCCCCEEEcccCCC
Q 003957 662 ECGDITA--YGVTSL-FNCIALEDLLLRHNGP 690 (784)
Q Consensus 662 ~c~~i~~--~~~~~l-~~~~~L~~L~L~~n~~ 690 (784)
+|+ ++. ..+..+ ..++.+..|++.+|.+
T Consensus 397 ~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 397 RNN-LVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred cCC-cccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 876 332 122333 3568889999999865
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.7e-07 Score=106.81 Aligned_cols=157 Identities=22% Similarity=0.234 Sum_probs=125.9
Q ss_pred CCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCcc
Q 003957 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYC 370 (784)
Q Consensus 291 ~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~ 370 (784)
.+|++|+++|...+.......++..+|+|++|.+.|-.. ....+..+..++|+|.+||+++++++.. ..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~-~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~G-------- 190 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF-DNDDFSQLCASFPNLRSLDISGTNISNL--SG-------- 190 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee-cchhHHHHhhccCccceeecCCCCccCc--HH--------
Confidence 689999999998888888999999999999999998443 3444778888899999999999998872 11
Q ss_pred CcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhh--hhhcc-----cCCcCEEEec
Q 003957 371 NSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKA--LYNFS-----GSSLEMLDVS 443 (784)
Q Consensus 371 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~--~~~l~-----~~~L~~L~Ls 443 (784)
++.+++|+.|.+.+-...+...+..+ -++++|+.||+|...-.+.. ..... .|.|+.||.|
T Consensus 191 -----------IS~LknLq~L~mrnLe~e~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 191 -----------ISRLKNLQVLSMRNLEFESYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred -----------HhccccHHHHhccCCCCCchhhHHHH-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 27789999999988776555556555 68999999999986433222 22222 5899999999
Q ss_pred CCccchhhHHHHHhcCCCccEEeccCC
Q 003957 444 DTMISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 444 ~~~i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
++.++...+..+....|+|+.+.+-+|
T Consensus 259 gTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 259 GTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred CcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 999999999999888899998886554
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.5e-06 Score=98.97 Aligned_cols=152 Identities=15% Similarity=0.119 Sum_probs=113.7
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
+-.+|++|||++...... .+.......+|+|++|.+++ ..+....+..+..++|+|..||+|..+-..+
T Consensus 120 sr~nL~~LdI~G~~~~s~-~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--------- 188 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSN-GWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTNISNL--------- 188 (699)
T ss_pred HHHhhhhcCccccchhhc-cHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCCccCc---------
Confidence 678999999999665544 66667778999999999999 7787788999999999999999995322212
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLI 339 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~ 339 (784)
....+|.+|+.|.+.+-...+...+..+.. +++|++||++.-....+..+....
T Consensus 189 -------------------------~GIS~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qY 242 (699)
T KOG3665|consen 189 -------------------------SGISRLKNLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQY 242 (699)
T ss_pred -------------------------HHHhccccHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHH
Confidence 114678999999988755444466777776 899999999985444333222211
Q ss_pred ----HhCCCCCEEEeeCCCCCHHHHHHhhccCC
Q 003957 340 ----RRCVKLQSIIVCDTSFGVYSIRALCSEVP 368 (784)
Q Consensus 340 ----~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~ 368 (784)
..+|+|+.||.+++.+....+..+....+
T Consensus 243 lec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 243 LECGMVLPELRFLDCSGTDINEEILEELLNSHP 275 (699)
T ss_pred HHhcccCccccEEecCCcchhHHHHHHHHHhCc
Confidence 22699999999999999888887755443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-06 Score=83.75 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=47.0
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEec
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLS 420 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls 420 (784)
.+.+|+.|++++|.|.. + +. +..++.|++|+++++...+-. ..+...+|+|+.|+++
T Consensus 40 ~l~~L~~L~Ls~N~I~~--l------------------~~-l~~L~~L~~L~L~~N~I~~i~--~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITK--L------------------EG-LPGLPRLKTLDLSNNRISSIS--EGLDKNLPNLQELYLS 96 (175)
T ss_dssp T-TT--EEE-TTS--S----------------------TT-----TT--EEE--SS---S-C--HHHHHH-TT--EEE-T
T ss_pred hhcCCCEEECCCCCCcc--c------------------cC-ccChhhhhhcccCCCCCCccc--cchHHhCCcCCEEECc
Confidence 34567777777776665 1 11 145778888888877653211 1233467888899988
Q ss_pred CCcCchhh-hhhcc-cCCcCEEEecCCccchhh--HHHHHhcCCCccEEeccC
Q 003957 421 GTQLADKA-LYNFS-GSSLEMLDVSDTMISGAA--LAYMVHGNSGLKYLNARG 469 (784)
Q Consensus 421 ~~~l~~~~-~~~l~-~~~L~~L~Ls~~~i~~~~--l~~~~~~l~~L~~L~L~~ 469 (784)
+|.+.+.. +..+. .++|+.|+|.+|.++... -..++..+|+|+.|+-..
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 88877643 34444 689999999998776433 334668899999998644
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.2e-07 Score=89.48 Aligned_cols=207 Identities=16% Similarity=0.103 Sum_probs=130.9
Q ss_pred hHHhhhcCCCccEEEeccc-----cCcccH---hhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccC
Q 003957 493 LFAELGRTRKLEEIVLGWG-----FSFLSL---EVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMS 564 (784)
Q Consensus 493 ~~~~l~~l~~L~~L~L~~~-----~~~~~~---~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~ 564 (784)
+-..+.-+++|..|.+... .+++.. ..-+..+.+|+.+.++.|.. ..+..+...-|.|.++.+.+..+.
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~---~~i~~~~~~kptl~t~~v~~s~~~ 250 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST---ENIVDIELLKPTLQTICVHNTTIQ 250 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch---hheeceeecCchhheeeeeccccc
Confidence 4445555788999988431 122211 12233466899999998842 222233333477888877655443
Q ss_pred hHHH--H--------------------HHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHH
Q 003957 565 DSII--I--------------------NILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVIL 622 (784)
Q Consensus 565 ~~~l--~--------------------~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l 622 (784)
+... + ..+.....|+++|+++|.....-.++ ...|.++.|+++. +.+...+-
T Consensus 251 ~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~--N~i~~v~n--- 324 (490)
T KOG1259|consen 251 DVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESV-KLAPKLRRLILSQ--NRIRTVQN--- 324 (490)
T ss_pred ccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhh-hhccceeEEeccc--cceeeehh---
Confidence 3210 0 00111236888999998432222233 3459999999999 66654322
Q ss_pred HhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHH--
Q 003957 623 TQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDA-- 700 (784)
Q Consensus 623 ~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~-- 700 (784)
...+++|++||+|+|....- ......+-+.+.|.|.+|. |. .+..+..+-+|..||+++|++ +.+.+.
T Consensus 325 La~L~~L~~LDLS~N~Ls~~---~Gwh~KLGNIKtL~La~N~-iE--~LSGL~KLYSLvnLDl~~N~I----e~ldeV~~ 394 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLAEC---VGWHLKLGNIKTLKLAQNK-IE--TLSGLRKLYSLVNLDLSSNQI----EELDEVNH 394 (490)
T ss_pred hhhcccceEeecccchhHhh---hhhHhhhcCEeeeehhhhh-Hh--hhhhhHhhhhheeccccccch----hhHHHhcc
Confidence 23467999999999876542 2233347789999999875 32 233445678899999999987 555444
Q ss_pred HhcCCCCceecccccccc
Q 003957 701 ASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 701 l~~l~~L~~L~L~~c~~~ 718 (784)
++++|.|+.+.+.+||..
T Consensus 395 IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cccccHHHHHhhcCCCcc
Confidence 899999999999999877
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.8e-09 Score=95.47 Aligned_cols=154 Identities=17% Similarity=0.044 Sum_probs=89.4
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCc
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELV 630 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~ 630 (784)
..++.|.++.|.++.. +.-+..+.+|+.|++++|.....+.++. .+|+|+.|+++. +.+. .++.-+..+|.|+
T Consensus 33 s~ITrLtLSHNKl~~v--ppnia~l~nlevln~~nnqie~lp~~is-sl~klr~lnvgm--nrl~--~lprgfgs~p~le 105 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVV--PPNIAELKNLEVLNLSNNQIEELPTSIS-SLPKLRILNVGM--NRLN--ILPRGFGSFPALE 105 (264)
T ss_pred hhhhhhhcccCceeec--CCcHHHhhhhhhhhcccchhhhcChhhh-hchhhhheecch--hhhh--cCccccCCCchhh
Confidence 4466677777776652 2234557788888888774333333333 347777777775 3332 1223344567788
Q ss_pred EEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCcee
Q 003957 631 ELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLV 710 (784)
Q Consensus 631 ~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L 710 (784)
.||+.+|+..... ...-..++..|+.|.|.++.. . .-+..++.+++|+.|.++.|.+ -.++..++.+.+|++|
T Consensus 106 vldltynnl~e~~-lpgnff~m~tlralyl~dndf-e-~lp~dvg~lt~lqil~lrdndl----l~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 106 VLDLTYNNLNENS-LPGNFFYMTTLRALYLGDNDF-E-ILPPDVGKLTNLQILSLRDNDL----LSLPKEIGDLTRLREL 178 (264)
T ss_pred hhhcccccccccc-CCcchhHHHHHHHHHhcCCCc-c-cCChhhhhhcceeEEeeccCch----hhCcHHHHHHHHHHHH
Confidence 8888776644321 111112244566667766552 1 1123345677777777777755 5566667777777777
Q ss_pred cccccccc
Q 003957 711 SLDLCDAS 718 (784)
Q Consensus 711 ~L~~c~~~ 718 (784)
.+++|...
T Consensus 179 hiqgnrl~ 186 (264)
T KOG0617|consen 179 HIQGNRLT 186 (264)
T ss_pred hcccceee
Confidence 77776655
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.8e-07 Score=89.21 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=36.1
Q ss_pred ccEEEecCCcCchhh-hhhcc--cCCcCEEEecCCccchh-hHHHHHhcCCCccEEeccC
Q 003957 414 LKSLCLSGTQLADKA-LYNFS--GSSLEMLDVSDTMISGA-ALAYMVHGNSGLKYLNARG 469 (784)
Q Consensus 414 L~~L~Ls~~~l~~~~-~~~l~--~~~L~~L~Ls~~~i~~~-~l~~~~~~l~~L~~L~L~~ 469 (784)
+..|.+.++.+..++ ...|. ++.++.+||.+|.+++- .+..+..++|.|+.|+++.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~ 106 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC 106 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC
Confidence 344555555555544 23333 46778888888877663 3566778888888888843
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.9e-07 Score=85.17 Aligned_cols=108 Identities=20% Similarity=0.162 Sum_probs=38.8
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEec
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLS 420 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls 420 (784)
++.+++.|+|.++.|.. ++ .+...+.+|+.|++++|.... +..+ ..+++|+.|+++
T Consensus 17 n~~~~~~L~L~~n~I~~--Ie------------------~L~~~l~~L~~L~Ls~N~I~~---l~~l-~~L~~L~~L~L~ 72 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--IE------------------NLGATLDKLEVLDLSNNQITK---LEGL-PGLPRLKTLDLS 72 (175)
T ss_dssp ---------------------------------------S--TT-TT--EEE-TTS--S-----TT-----TT--EEE--
T ss_pred ccccccccccccccccc--cc------------------chhhhhcCCCEEECCCCCCcc---ccCc-cChhhhhhcccC
Confidence 45678889999988876 22 222357899999999987633 3333 568999999999
Q ss_pred CCcCchhhhhhc-ccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCc
Q 003957 421 GTQLADKALYNF-SGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKN 472 (784)
Q Consensus 421 ~~~l~~~~~~~l-~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~ 472 (784)
+|.+++.+..-. ..++|++|++++|+|.+..--..+..+|+|+.|++.+++-
T Consensus 73 ~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 73 NNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 999987643211 2689999999999876643323346889999999988743
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.9e-05 Score=77.64 Aligned_cols=91 Identities=13% Similarity=0.220 Sum_probs=49.4
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCC--CCCHHH---HHH---HHHhCc
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCN--GVDGMY---LLE---LMCQAR 412 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~--~l~~~~---l~~---l~~~~~ 412 (784)
....+..++|++|.|+..+..++|.-+ ..-.+|+..+++.-. ...+.. +.. ....||
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~i---------------a~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp 92 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVI---------------ANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCP 92 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHH---------------hhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCC
Confidence 367788888888888888888877544 444566666665421 111111 111 124566
Q ss_pred cccEEEecCCcCchhhhhhcc-----cCCcCEEEecCCc
Q 003957 413 KLKSLCLSGTQLADKALYNFS-----GSSLEMLDVSDTM 446 (784)
Q Consensus 413 ~L~~L~Ls~~~l~~~~~~~l~-----~~~L~~L~Ls~~~ 446 (784)
+|+..+||.|.+....+..+. .+.|++|.+++|.
T Consensus 93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 666666666654433322211 2445555555553
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.5e-06 Score=81.94 Aligned_cols=194 Identities=22% Similarity=0.132 Sum_probs=121.6
Q ss_pred HHHhhccCCCCcEEEeeeeccChH-HHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHH
Q 003957 543 LRLLPTTCPMLELVVLYFQVMSDS-IIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVI 621 (784)
Q Consensus 543 l~~l~~~~~~L~~L~L~~~~i~~~-~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~ 621 (784)
+..++..++.++++++..|.|++. .+..+++++|.|+.|+++.|.-...+........+|++|.+.| ..+.-.....
T Consensus 63 ~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg--T~L~w~~~~s 140 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG--TGLSWTQSTS 140 (418)
T ss_pred HHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC--CCCChhhhhh
Confidence 445566677788888877777763 4666777788888888877732222222222335788888877 5666666666
Q ss_pred HHhcCCCCcEEEecCCCC----CChH-----------------------HHHHHHhcCCCCcEEeecCCCCCCHHHHHHh
Q 003957 622 LTQNCSELVELSLVGCTL----LSSD-----------------------SQLIISQGWPGLISLHLEECGDITAYGVTSL 674 (784)
Q Consensus 622 l~~~~~~L~~L~Ls~c~~----~~~~-----------------------~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l 674 (784)
....+|.+++|.+|.|+. +++. ....+..-+|++..+.+..|+.-+...-...
T Consensus 141 ~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s 220 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS 220 (418)
T ss_pred hhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccC
Confidence 666777777777776621 1110 0111334478888888888874343333344
Q ss_pred hCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCC-ccc---ccCCCCCCEEEecC
Q 003957 675 FNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFE-IPD---YADRYSLSTVKITK 740 (784)
Q Consensus 675 ~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~-l~~---~~~~~~L~~L~is~ 740 (784)
..+|.+-.|+|+.+++ +.=...+.+.++++|..|.+..+|.....-. .+. ++.++.++.|+=++
T Consensus 221 e~~p~~~~LnL~~~~i--dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGsk 288 (418)
T KOG2982|consen 221 EPFPSLSCLNLGANNI--DSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSK 288 (418)
T ss_pred CCCCcchhhhhccccc--ccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcc
Confidence 4677888888888876 5455667788899999999998887742211 111 45566666665443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.7e-08 Score=89.08 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=102.4
Q ss_pred CCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCC
Q 003957 575 LRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPG 654 (784)
Q Consensus 575 l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~ 654 (784)
+.+++.|.+++|.-......++.. .+|+.|++.+ +.+.+ ++.-+++++.|+.|++.-|+... ..--...+|.
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l-~nlevln~~n--nqie~--lp~~issl~klr~lnvgmnrl~~---lprgfgs~p~ 103 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAEL-KNLEVLNLSN--NQIEE--LPTSISSLPKLRILNVGMNRLNI---LPRGFGSFPA 103 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHh-hhhhhhhccc--chhhh--cChhhhhchhhhheecchhhhhc---CccccCCCch
Confidence 345667777777433333334332 6788888887 56643 33334457788888887665433 2222345788
Q ss_pred CcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCC
Q 003957 655 LISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSL 733 (784)
Q Consensus 655 L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L 733 (784)
|+.|+|..++.-...-+..|..++.|+-|.+++|.+ +.++...+.+++|+.|.++.|+.+ ++|. ++.+..|
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndf----e~lp~dvg~lt~lqil~lrdndll----~lpkeig~lt~l 175 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF----EILPPDVGKLTNLQILSLRDNDLL----SLPKEIGDLTRL 175 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCc----ccCChhhhhhcceeEEeeccCchh----hCcHHHHHHHHH
Confidence 888888887633322233444667778888888866 778888888888888888888877 6787 8888888
Q ss_pred CEEEecCCCC
Q 003957 734 STVKITKCKS 743 (784)
Q Consensus 734 ~~L~is~C~~ 743 (784)
++|+|+++.-
T Consensus 176 relhiqgnrl 185 (264)
T KOG0617|consen 176 RELHIQGNRL 185 (264)
T ss_pred HHHhccccee
Confidence 8888888764
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.5e-05 Score=72.95 Aligned_cols=114 Identities=19% Similarity=0.167 Sum_probs=69.9
Q ss_pred CCccEEEccCCCCCCChHHHHHHH----hcCCCCcEEEecCCCCCChH--HHHHHHhcCCCCcEEeecCCCCCCHHHHHH
Q 003957 600 PNLRKLKLERVTPWMTNNDLVILT----QNCSELVELSLVGCTLLSSD--SQLIISQGWPGLISLHLEECGDITAYGVTS 673 (784)
Q Consensus 600 ~~L~~L~L~~c~~~l~~~~l~~l~----~~~~~L~~L~Ls~c~~~~~~--~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~ 673 (784)
.+|+.+++.. +.|..+++..+. .-|++|+.||+..|-..-.+ .+......|+.|+.|.+.+|- ++..|...
T Consensus 185 ~~lk~vki~q--NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~ 261 (388)
T COG5238 185 ENLKEVKIQQ--NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKS 261 (388)
T ss_pred cCceeEEeee--cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-hccccHHH
Confidence 5777777777 567766655332 24678888888887654333 233344568888889888886 44444443
Q ss_pred h------hCCCCCCEEEcccCCCCCChhHH-----HHH-HhcCCCCceecccccccc
Q 003957 674 L------FNCIALEDLLLRHNGPGIPRDFI-----LDA-ASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 674 l------~~~~~L~~L~L~~n~~gl~~~~~-----~~~-l~~l~~L~~L~L~~c~~~ 718 (784)
+ ...|+|+.|-..+|.+ ..+.+ +.. =..+|-|..|.+.+|...
T Consensus 262 v~~~f~e~~~p~l~~L~~~Yne~--~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 262 VLRRFNEKFVPNLMPLPGDYNER--RGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HHHHhhhhcCCCccccccchhhh--cCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 3 1478888888888753 11111 111 134566777777766655
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.84 E-value=4e-06 Score=83.31 Aligned_cols=103 Identities=21% Similarity=0.150 Sum_probs=56.0
Q ss_pred CCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCC
Q 003957 626 CSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMP 705 (784)
Q Consensus 626 ~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~ 705 (784)
.+.|+++|+|+|.+.. ...-.+-.|+++.|++++|. |+. +..++.+++|+.||+++|.+ ..+..+-..+.
T Consensus 283 Wq~LtelDLS~N~I~~---iDESvKL~Pkir~L~lS~N~-i~~--v~nLa~L~~L~~LDLS~N~L----s~~~Gwh~KLG 352 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ---IDESVKLAPKLRRLILSQNR-IRT--VQNLAELPQLQLLDLSGNLL----AECVGWHLKLG 352 (490)
T ss_pred Hhhhhhccccccchhh---hhhhhhhccceeEEeccccc-eee--ehhhhhcccceEeecccchh----HhhhhhHhhhc
Confidence 3467777777776543 11111225777777777766 332 22345677777777777754 44444444455
Q ss_pred CCceeccccccccCCCCCcccccCCCCCCEEEecCCC
Q 003957 706 MLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCK 742 (784)
Q Consensus 706 ~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~ 742 (784)
+.++|.+.+|..- +++.+..+.+|..||++.+.
T Consensus 353 NIKtL~La~N~iE----~LSGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 353 NIKTLKLAQNKIE----TLSGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred CEeeeehhhhhHh----hhhhhHhhhhheeccccccc
Confidence 5555555554322 22334444555555555554
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.72 E-value=1.9e-05 Score=94.04 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=52.1
Q ss_pred CCCccEEecCCCCC-CChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCC
Q 003957 290 PSKITKLTLEGRSD-MCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVP 368 (784)
Q Consensus 290 l~~L~~L~Ls~~~~-l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~ 368 (784)
.++|++|-+.++.. +... ...+...+|.|++|++++|..++. ++..++.+-+|+.|+++++.+..
T Consensus 544 ~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~t~I~~----------- 609 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSDTGISH----------- 609 (889)
T ss_pred CCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccCCCccc-----------
Confidence 34566666665532 1111 112223466666666666544332 33444555566666666665553
Q ss_pred ccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecC
Q 003957 369 YCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSG 421 (784)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~ 421 (784)
+|.-+.++..|.+|++..+.... ..+.....+++|++|.+..
T Consensus 610 ---------LP~~l~~Lk~L~~Lnl~~~~~l~--~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 610 ---------LPSGLGNLKKLIYLNLEVTGRLE--SIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ---------cchHHHHHHhhheeccccccccc--cccchhhhcccccEEEeec
Confidence 34444555566666665544321 1122333455555555544
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=1.3e-05 Score=88.65 Aligned_cols=152 Identities=17% Similarity=0.119 Sum_probs=98.2
Q ss_pred cCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhC----------CCCCEEEeeCCC
Q 003957 285 HSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRC----------VKLQSIIVCDTS 354 (784)
Q Consensus 285 ~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~----------~~L~~L~Ls~~~ 354 (784)
.++..+..|+.|.|.+|..-+..++..+-. .|++|.- .+ +-..+.+++..| .+|.+.+.+.|.
T Consensus 103 i~ifpF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC---~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLSTAKGLQELRH---QLEKLIC---HN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNR 175 (1096)
T ss_pred ceeccccceeeEEecCcchhhhhhhHHHHH---hhhhhhh---hc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhh
Confidence 345677899999999997766666666655 4666643 22 234566666665 245555666654
Q ss_pred CCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhccc
Q 003957 355 FGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSG 434 (784)
Q Consensus 355 i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~ 434 (784)
+.. +-.....++.|+.|+|++|+.. ....+ ..+++|++|+|+.|.+....-....+
T Consensus 176 L~~--------------------mD~SLqll~ale~LnLshNk~~---~v~~L-r~l~~LkhLDlsyN~L~~vp~l~~~g 231 (1096)
T KOG1859|consen 176 LVL--------------------MDESLQLLPALESLNLSHNKFT---KVDNL-RRLPKLKHLDLSYNCLRHVPQLSMVG 231 (1096)
T ss_pred HHh--------------------HHHHHHHHHHhhhhccchhhhh---hhHHH-Hhcccccccccccchhccccccchhh
Confidence 432 1122255778899999988763 33333 78899999999998777655444345
Q ss_pred CCcCEEEecCCccchhhHHHHHhcCCCccEEeccCC
Q 003957 435 SSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 435 ~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
..|+.|.|+||.++. +.-+ .++.+|+.|++++.
T Consensus 232 c~L~~L~lrnN~l~t--L~gi-e~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 232 CKLQLLNLRNNALTT--LRGI-ENLKSLYGLDLSYN 264 (1096)
T ss_pred hhheeeeecccHHHh--hhhH-HhhhhhhccchhHh
Confidence 568899998886542 2222 35577888887654
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=3.3e-05 Score=60.12 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=36.8
Q ss_pred CCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCC
Q 003957 678 IALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCK 742 (784)
Q Consensus 678 ~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~ 742 (784)
|+|++|++++|.+ . ....+.+.++++|++|++++|... .+++ |..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l--~-~i~~~~f~~l~~L~~L~l~~N~l~----~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKL--T-EIPPDSFSNLPNLETLDLSNNNLT----SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTE--S-EECTTTTTTGTTESEEEETSSSES----EEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCC--C-ccCHHHHcCCCCCCEeEccCCccC----ccCHHHHcCCCCCCEEeCcCCc
Confidence 4566777777654 3 333345666777777777765554 3343 7777777777777775
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=2.5e-05 Score=86.56 Aligned_cols=176 Identities=18% Similarity=0.097 Sum_probs=105.2
Q ss_pred hcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhC----------CCCcEEEecccCChhHH
Q 003957 523 AIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESL----------RRLQVLAICHCLGDLSI 592 (784)
Q Consensus 523 ~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l----------~~L~~L~Ls~c~~~~~~ 592 (784)
.+.+|+.|.+.+|+--...++..+.. +|++|.-.. .. +.+..++..| ..|...+.++|.- ..+
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC~~-Sl--~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L-~~m 179 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQELRH---QLEKLICHN-SL--DALRHVFASCGGDISNSPVWNKLATASFSYNRL-VLM 179 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHHHH---hhhhhhhhc-cH--HHHHHHHHHhccccccchhhhhHhhhhcchhhH-HhH
Confidence 35678888888885433444444433 344443211 11 1122222222 1455666666621 111
Q ss_pred HHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHH
Q 003957 593 SSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVT 672 (784)
Q Consensus 593 ~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~ 672 (784)
..-...+|.|+.|+|++ |++++.+ ....|+.|++|||++|..-.- ...-..+|. |+.|.|.+|..-+-.|
T Consensus 180 D~SLqll~ale~LnLsh--Nk~~~v~---~Lr~l~~LkhLDlsyN~L~~v--p~l~~~gc~-L~~L~lrnN~l~tL~g-- 249 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSH--NKFTKVD---NLRRLPKLKHLDLSYNCLRHV--PQLSMVGCK-LQLLNLRNNALTTLRG-- 249 (1096)
T ss_pred HHHHHHHHHhhhhccch--hhhhhhH---HHHhcccccccccccchhccc--cccchhhhh-heeeeecccHHHhhhh--
Confidence 11223448899999999 7787654 345688999999999876441 111223466 9999999887433333
Q ss_pred HhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 673 SLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 673 ~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+.++.+|+-||+++|-+ .+-.-..-+..+..|+.|+|.|||.-
T Consensus 250 -ie~LksL~~LDlsyNll--~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 -IENLKSLYGLDLSYNLL--SEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -HHhhhhhhccchhHhhh--hcchhhhHHHHHHHHHHHhhcCCccc
Confidence 34678899999999854 22222233666788999999999875
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0002 Score=55.71 Aligned_cols=58 Identities=28% Similarity=0.344 Sum_probs=37.3
Q ss_pred ccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCC
Q 003957 412 RKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 412 ~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
|+|+.|++++|.++......|. .++|++|++++|.++...... +.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDA-FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTT-TTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHH-HcCCCCCCEEeCcCC
Confidence 4567777777766666555555 577777777777665443332 357777777777665
|
... |
| >PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00014 Score=63.42 Aligned_cols=67 Identities=27% Similarity=0.402 Sum_probs=52.9
Q ss_pred cccccccccchhhhhccccCCcccccccchhhHHHHHHHHhhHhhhccCCCcchhHhHHHhheeeeeeheec
Q 003957 4 MSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLTILKEIRISILPLWFA 75 (784)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (784)
..+..|.++|++.+...+.++++.|.+|+++-+|++.|+..+.+.-+ +.-..+++.||+..+|..+.
T Consensus 32 ~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~-----~~~~~Ll~~iR~~~l~~~~L 98 (103)
T PF07707_consen 32 SKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENRE-----EHLKELLSCIRFPLLSPEEL 98 (103)
T ss_dssp TTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHHT-----TTHHHHHCCCHHHCT-HHHH
T ss_pred ccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHHHH-----HHHHHHHHhCCcccCCHHHH
Confidence 45678999999999999999999999999999999999999876422 22567889999998886543
|
BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A. |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00037 Score=66.23 Aligned_cols=84 Identities=21% Similarity=0.271 Sum_probs=65.7
Q ss_pred CccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCC
Q 003957 601 NLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIAL 680 (784)
Q Consensus 601 ~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L 680 (784)
.++.++-+++ .|..+|+..+ .+++.++.|.+.+|....|..+..+....++|+.|+|++|..||+.|+..+..+++|
T Consensus 102 ~IeaVDAsds--~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDS--SIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred eEEEEecCCc--hHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 3455555553 4666777654 367888888888888888888888877788899999999998998888888888888
Q ss_pred CEEEccc
Q 003957 681 EDLLLRH 687 (784)
Q Consensus 681 ~~L~L~~ 687 (784)
+.|.|.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 8887765
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0011 Score=79.23 Aligned_cols=182 Identities=22% Similarity=0.155 Sum_probs=115.2
Q ss_pred cCCCCcEEEeeeecc-ChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCC
Q 003957 549 TCPMLELVVLYFQVM-SDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCS 627 (784)
Q Consensus 549 ~~~~L~~L~L~~~~i-~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~ 627 (784)
.||.|++|-+..+.- -......++..++.|+.||+++|.....++.....+-+|++|++++ ..+. .++.-+.+++
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~--t~I~--~LP~~l~~Lk 618 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD--TGIS--HLPSGLGNLK 618 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC--CCcc--ccchHHHHHH
Confidence 467888888865531 1222345688899999999999854444444444557999999999 4565 3444455677
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCC-CCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECG-DITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPM 706 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~-~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~ 706 (784)
.|.+|++..+...... ..+...+++|++|.+..-. ..+...+..+.++.+|+.+...... ..+.+-+...++
T Consensus 619 ~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s-----~~~~e~l~~~~~ 691 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS-----VLLLEDLLGMTR 691 (889)
T ss_pred hhheeccccccccccc--cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch-----hHhHhhhhhhHH
Confidence 8999999987765422 4455568899999997754 2333334444567777777775542 222233344444
Q ss_pred Ccee----ccccccccCCCCCccc-ccCCCCCCEEEecCCCCcC
Q 003957 707 LRLV----SLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 707 L~~L----~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~ 745 (784)
|.++ .+.+|... ..+. ...+.+|+.|.|.+|+...
T Consensus 692 L~~~~~~l~~~~~~~~----~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 692 LRSLLQSLSIEGCSKR----TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred HHHHhHhhhhcccccc----eeecccccccCcceEEEEcCCCch
Confidence 4433 33332322 2333 7778889999999888643
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00062 Score=75.34 Aligned_cols=174 Identities=20% Similarity=0.105 Sum_probs=94.6
Q ss_pred CcccEEEecCCCCCChHHHHHhhccC-CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCcc
Q 003957 525 KLLHSITVGLGGSLGEDALRLLPTTC-PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLR 603 (784)
Q Consensus 525 ~~L~~L~L~~~~~l~~~~l~~l~~~~-~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~ 603 (784)
+.+..|++..+.- .+ +....... ++|+.|+++.+.+.+. +.....+++|+.|++++|.......... ..++|+
T Consensus 116 ~~l~~L~l~~n~i-~~--i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~~~L~ 189 (394)
T COG4886 116 TNLTSLDLDNNNI-TD--IPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLSDLPKLLS-NLSNLN 189 (394)
T ss_pred cceeEEecCCccc-cc--Cccccccchhhcccccccccchhhh--hhhhhccccccccccCCchhhhhhhhhh-hhhhhh
Confidence 4567777766521 11 11111212 2677888877777653 2335667788888887773222222111 346777
Q ss_pred EEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEE
Q 003957 604 KLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDL 683 (784)
Q Consensus 604 ~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L 683 (784)
.|.+++ +.+.+.... ......|++|.+++|..... ......+.++..+.+.++. +... +..+..++.++.|
T Consensus 190 ~L~ls~--N~i~~l~~~--~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~-~~~~-~~~~~~l~~l~~L 260 (394)
T COG4886 190 NLDLSG--NKISDLPPE--IELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNNK-LEDL-PESIGNLSNLETL 260 (394)
T ss_pred heeccC--CccccCchh--hhhhhhhhhhhhcCCcceec---chhhhhcccccccccCCce-eeec-cchhcccccccee
Confidence 788877 555543221 12233577777777753331 1122335556666655544 2211 2233466677777
Q ss_pred EcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 684 LLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 684 ~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
++++|.+ ..+.. ++.+.+|+.|+++++...
T Consensus 261 ~~s~n~i----~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 261 DLSNNQI----SSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccccc----ccccc-ccccCccCEEeccCcccc
Confidence 7777755 33333 666777777777776655
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00031 Score=78.33 Aligned_cols=217 Identities=18% Similarity=0.162 Sum_probs=109.2
Q ss_pred ccEEEecCCCCCCHHHHHH---HHHhCccccEEEecCCcCchhhhhhcc-----c-CCcCEEEecCCccchhhHHHHHh-
Q 003957 388 LQMLHMACCNGVDGMYLLE---LMCQARKLKSLCLSGTQLADKALYNFS-----G-SSLEMLDVSDTMISGAALAYMVH- 457 (784)
Q Consensus 388 L~~L~L~~c~~l~~~~l~~---l~~~~~~L~~L~Ls~~~l~~~~~~~l~-----~-~~L~~L~Ls~~~i~~~~l~~~~~- 457 (784)
+.+|.|.+|..- +..... .....+.|+.|++++|.+.+.+...+. . ..+++|++..|.++..+...+..
T Consensus 89 l~~L~L~~~~l~-~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLG-DRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccc-cchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 677777776542 222222 234566777777777777766554443 1 35666666666655554433322
Q ss_pred --cCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCC
Q 003957 458 --GNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLG 535 (784)
Q Consensus 458 --~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~ 535 (784)
.+..++.++++.|..+ ..+.. .....+.. .+....++++|++..|
T Consensus 168 L~~~~~l~~l~l~~n~l~-~~g~~------------~l~~~l~~--------------------~~~~~~~le~L~L~~~ 214 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLI-ELGLL------------VLSQALES--------------------AASPLSSLETLKLSRC 214 (478)
T ss_pred HhcccchhHHHHHhcccc-hhhhH------------HHhhhhhh--------------------hhcccccHHHHhhhhc
Confidence 2445555555544332 11110 00011110 0112334666666666
Q ss_pred CCCChHHHHHhh---ccCCC-CcEEEeeeeccChHHHHHHHhhCC----CCcEEEeccc-CChh---HHHHhhcCCCCcc
Q 003957 536 GSLGEDALRLLP---TTCPM-LELVVLYFQVMSDSIIINILESLR----RLQVLAICHC-LGDL---SISSFKLPLPNLR 603 (784)
Q Consensus 536 ~~l~~~~l~~l~---~~~~~-L~~L~L~~~~i~~~~l~~~~~~l~----~L~~L~Ls~c-~~~~---~~~~l~~~~~~L~ 603 (784)
. ++......+. ...+. +.++++.+|.+.|.++....+.+. .++++++++| +++. .+......+++++
T Consensus 215 ~-~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~ 293 (478)
T KOG4308|consen 215 G-VTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLE 293 (478)
T ss_pred C-cChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHH
Confidence 2 2232222222 12333 555777778888777666555444 4477777777 3322 2333344556777
Q ss_pred EEEccCCCCCCChHHHHHHHh---cCCCCcEEEecCCCCCC
Q 003957 604 KLKLERVTPWMTNNDLVILTQ---NCSELVELSLVGCTLLS 641 (784)
Q Consensus 604 ~L~L~~c~~~l~~~~l~~l~~---~~~~L~~L~Ls~c~~~~ 641 (784)
.+.+.. +.+++.+.....+ ....+.++-+.++....
T Consensus 294 ~l~l~~--n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 332 (478)
T KOG4308|consen 294 ELSLSN--NPLTDYGVELLLEALERKTPLLHLVLGGTGKGT 332 (478)
T ss_pred Hhhccc--CccccHHHHHHHHHhhhcccchhhhccccCccc
Confidence 777777 5666655543332 22345555555544443
|
|
| >smart00875 BACK BTB And C-terminal Kelch | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00032 Score=60.76 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=56.6
Q ss_pred cccccccccchhhhhccccCCcccccccchhhHHHHHHHHhhHhhhccCCCcchhHhHHHhheeeeeeheecc
Q 003957 4 MSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLTILKEIRISILPLWFAA 76 (784)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (784)
.++..|.++|++.+...+++++|+|.+|+.+-+|++.|+..++.. . ..-..+++.||+.++|..+.+
T Consensus 32 ~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~~~--~----~~~~~ll~~ir~~~~~~~~l~ 98 (101)
T smart00875 32 AQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDPER--R----RHLPELLSHVRFPLLSPEYLL 98 (101)
T ss_pred hcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCHHH--H----HHHHHHHHhCCCCCCCHHHHH
Confidence 455789999999999999999999999999999999999998721 1 134578999999999877654
|
The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues. |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.002 Score=75.29 Aligned_cols=61 Identities=25% Similarity=0.170 Sum_probs=28.3
Q ss_pred CCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccc
Q 003957 652 WPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCD 716 (784)
Q Consensus 652 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~ 716 (784)
+++|+.|+|++|. ++...+..+..+++|+.|+|++|.+ . ..+++.++.+++|+.|+|++|.
T Consensus 441 L~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~LdLs~N~l--s-g~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 441 LRHLQSINLSGNS-IRGNIPPSLGSITSLEVLDLSYNSF--N-GSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CCCCCEEECCCCc-ccCcCChHHhCCCCCCEEECCCCCC--C-CCCchHHhcCCCCCEEECcCCc
Confidence 4455555555443 3322233344455555555555533 2 3344445555555555555544
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.00051 Score=76.61 Aligned_cols=88 Identities=19% Similarity=0.096 Sum_probs=42.2
Q ss_pred hcCCCccEEEecCCCCCCHHHHHHHHHhC----ccccEEEecCCcCchhhhhhcc-----cCCcCEEEecCCccchhhHH
Q 003957 383 TLASNLQMLHMACCNGVDGMYLLELMCQA----RKLKSLCLSGTQLADKALYNFS-----GSSLEMLDVSDTMISGAALA 453 (784)
Q Consensus 383 ~~l~~L~~L~L~~c~~l~~~~l~~l~~~~----~~L~~L~Ls~~~l~~~~~~~l~-----~~~L~~L~Ls~~~i~~~~l~ 453 (784)
...+.|+.|+++++..- +.+...+.... ..++.|++..|.+++.+...+. ...++.++++.|.+...+..
T Consensus 112 ~t~~~L~~L~l~~n~l~-~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 112 KTLPTLGQLDLSGNNLG-DEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred cccccHhHhhcccCCCc-cHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence 33445555666555442 33333332211 3344555555655554433322 35666666666654333322
Q ss_pred HHH---h----cCCCccEEeccCCC
Q 003957 454 YMV---H----GNSGLKYLNARGCK 471 (784)
Q Consensus 454 ~~~---~----~l~~L~~L~L~~c~ 471 (784)
.+. . ...++++|++.+|.
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~ 215 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCG 215 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcC
Confidence 221 1 24456777776663
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0027 Score=70.18 Aligned_cols=147 Identities=20% Similarity=0.199 Sum_probs=97.4
Q ss_pred CccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccC
Q 003957 292 KITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCN 371 (784)
Q Consensus 292 ~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~ 371 (784)
+|+.|+++++.. .. +..-...+++|+.|++++|. +++ ++......+.|+.|++++|.+..
T Consensus 141 nL~~L~l~~N~i-~~--l~~~~~~l~~L~~L~l~~N~-l~~--l~~~~~~~~~L~~L~ls~N~i~~-------------- 200 (394)
T COG4886 141 NLKELDLSDNKI-ES--LPSPLRNLPNLKNLDLSFND-LSD--LPKLLSNLSNLNNLDLSGNKISD-------------- 200 (394)
T ss_pred hcccccccccch-hh--hhhhhhccccccccccCCch-hhh--hhhhhhhhhhhhheeccCCcccc--------------
Confidence 899999998843 22 21223468999999999853 333 23333377899999999998877
Q ss_pred cccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchh
Q 003957 372 SSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGA 450 (784)
Q Consensus 372 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~ 450 (784)
+|........|++|.++++..+.. +. ....+.++..+.+.++.+.+. ...+. .++++.|++++|.++..
T Consensus 201 ------l~~~~~~~~~L~~l~~~~N~~~~~--~~-~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 201 ------LPPEIELLSALEELDLSNNSIIEL--LS-SLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred ------CchhhhhhhhhhhhhhcCCcceec--ch-hhhhcccccccccCCceeeec-cchhccccccceecccccccccc
Confidence 333334556689999988853221 11 236677777777777765542 11111 35699999999987765
Q ss_pred hHHHHHhcCCCccEEeccCCC
Q 003957 451 ALAYMVHGNSGLKYLNARGCK 471 (784)
Q Consensus 451 ~l~~~~~~l~~L~~L~L~~c~ 471 (784)
.. +....++++|++++..
T Consensus 271 ~~---~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 271 SS---LGSLTNLRELDLSGNS 288 (394)
T ss_pred cc---ccccCccCEEeccCcc
Confidence 44 3567889999887653
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0031 Score=60.07 Aligned_cols=62 Identities=21% Similarity=0.307 Sum_probs=31.0
Q ss_pred CCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCC
Q 003957 600 PNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEEC 663 (784)
Q Consensus 600 ~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c 663 (784)
+.++.|.+..| ..+.|.++..+....++|+.|++++|+.+++..+..+. .+++|+.|.|++-
T Consensus 125 ~~i~~l~l~~c-k~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L~l~~l 186 (221)
T KOG3864|consen 125 RSIKSLSLANC-KYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRRLHLYDL 186 (221)
T ss_pred chhhhheeccc-cchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHHHHhcCc
Confidence 44444444444 34455555544444455555555555555555544442 3555555555543
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0004 Score=68.87 Aligned_cols=80 Identities=28% Similarity=0.352 Sum_probs=42.0
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHH--HHhcCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILD--AASKMP 705 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~--~l~~l~ 705 (784)
+.+.|+..||.+.+ . .+...++.|+.|.|+-|. |+ .+..+..|++|++|.|+.|.| ..+-+ .+.++|
T Consensus 20 ~vkKLNcwg~~L~D-I---sic~kMp~lEVLsLSvNk-Is--sL~pl~rCtrLkElYLRkN~I----~sldEL~YLknlp 88 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD-I---SICEKMPLLEVLSLSVNK-IS--SLAPLQRCTRLKELYLRKNCI----ESLDELEYLKNLP 88 (388)
T ss_pred HhhhhcccCCCccH-H---HHHHhcccceeEEeeccc-cc--cchhHHHHHHHHHHHHHhccc----ccHHHHHHHhcCc
Confidence 44555555555433 1 122345556666666544 33 133344566666666666654 33322 256666
Q ss_pred CCceecccccccc
Q 003957 706 MLRLVSLDLCDAS 718 (784)
Q Consensus 706 ~L~~L~L~~c~~~ 718 (784)
+|+.|+|..|+-.
T Consensus 89 sLr~LWL~ENPCc 101 (388)
T KOG2123|consen 89 SLRTLWLDENPCC 101 (388)
T ss_pred hhhhHhhccCCcc
Confidence 6666666666655
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0026 Score=45.49 Aligned_cols=34 Identities=26% Similarity=0.250 Sum_probs=13.7
Q ss_pred CCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccc
Q 003957 679 ALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCD 716 (784)
Q Consensus 679 ~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~ 716 (784)
+|++|++++|++ ..++..++++++|+.|++++|+
T Consensus 2 ~L~~L~l~~N~i----~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQI----TDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-----SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCC----cccCchHhCCCCCCEEEecCCC
Confidence 344444444433 2333334444444444444443
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0063 Score=71.10 Aligned_cols=105 Identities=13% Similarity=0.015 Sum_probs=70.1
Q ss_pred CCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcC
Q 003957 345 LQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQL 424 (784)
Q Consensus 345 L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l 424 (784)
++.|+|+++.+.. .+|..+..+++|+.|+|++|... ..++.....+++|+.|+|++|.+
T Consensus 420 v~~L~L~~n~L~g-------------------~ip~~i~~L~~L~~L~Ls~N~l~--g~iP~~~~~l~~L~~LdLs~N~l 478 (623)
T PLN03150 420 IDGLGLDNQGLRG-------------------FIPNDISKLRHLQSINLSGNSIR--GNIPPSLGSITSLEVLDLSYNSF 478 (623)
T ss_pred EEEEECCCCCccc-------------------cCCHHHhCCCCCCEEECCCCccc--CcCChHHhCCCCCCEEECCCCCC
Confidence 5667777776643 14455577888899999887642 12333347888889999988888
Q ss_pred chhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCC
Q 003957 425 ADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 425 ~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
+...+..+. .++|+.|+|++|.++......+.....++..+++.++
T Consensus 479 sg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 766655555 5788899998887766554444333345666766654
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0011 Score=58.94 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=61.5
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHh-hCCCCCCEEEcccCCCCCChhHHHHHHhcCCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSL-FNCIALEDLLLRHNGPGIPRDFILDAASKMPM 706 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l-~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~ 706 (784)
-+..++|+.|.+.--.-......+...|+..+|++|. +.+. +..+ ..++.++.|++++|.+ ..+++.+..++.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~f-p~kft~kf~t~t~lNl~~nei----sdvPeE~Aam~a 101 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKF-PKKFTIKFPTATTLNLANNEI----SDVPEELAAMPA 101 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhC-CHHHhhccchhhhhhcchhhh----hhchHHHhhhHH
Confidence 3556677777654211122222344556666777655 3322 2233 2566777777777766 555555777777
Q ss_pred CceeccccccccCCCCCccc-ccCCCCCCEEEecCCCC
Q 003957 707 LRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKS 743 (784)
Q Consensus 707 L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~ 743 (784)
|+.|+++.|+.. ..|. +..+.+|..||..++..
T Consensus 102 Lr~lNl~~N~l~----~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 102 LRSLNLRFNPLN----AEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred hhhcccccCccc----cchHHHHHHHhHHHhcCCCCcc
Confidence 777777777766 4455 44466666666666553
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.012 Score=63.55 Aligned_cols=137 Identities=16% Similarity=0.131 Sum_probs=69.0
Q ss_pred CCCCcEEEeeeeccChHHHHHHHhhCC-CCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCC
Q 003957 550 CPMLELVVLYFQVMSDSIIINILESLR-RLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSE 628 (784)
Q Consensus 550 ~~~L~~L~L~~~~i~~~~l~~~~~~l~-~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~ 628 (784)
|++++.|+++.+.++.. + .+| +|++|.+++|..-..+... ..++|++|++++| ..+. . + .++
T Consensus 51 ~~~l~~L~Is~c~L~sL--P----~LP~sLtsL~Lsnc~nLtsLP~~--LP~nLe~L~Ls~C-s~L~--s---L---P~s 113 (426)
T PRK15386 51 ARASGRLYIKDCDIESL--P----VLPNELTEITIENCNNLTTLPGS--IPEGLEKLTVCHC-PEIS--G---L---PES 113 (426)
T ss_pred hcCCCEEEeCCCCCccc--C----CCCCCCcEEEccCCCCcccCCch--hhhhhhheEccCc-cccc--c---c---ccc
Confidence 57788888864454432 1 233 6777887776332221111 1247777777777 3342 1 1 236
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCc
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLR 708 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~ 708 (784)
|+.|+++++.... +..--++|+.|.+.+++.....+... .-.++|+.|++++|.. ...++.+. .+|+
T Consensus 114 Le~L~L~~n~~~~------L~~LPssLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~----i~LP~~LP--~SLk 180 (426)
T PRK15386 114 VRSLEIKGSATDS------IKNVPNGLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSN----IILPEKLP--ESLQ 180 (426)
T ss_pred cceEEeCCCCCcc------cccCcchHhheecccccccccccccc-ccCCcccEEEecCCCc----ccCccccc--ccCc
Confidence 7777776543221 11112456667665433111111110 0135788888888753 22222222 4788
Q ss_pred eecccccc
Q 003957 709 LVSLDLCD 716 (784)
Q Consensus 709 ~L~L~~c~ 716 (784)
.|.++.+.
T Consensus 181 ~L~ls~n~ 188 (426)
T PRK15386 181 SITLHIEQ 188 (426)
T ss_pred EEEecccc
Confidence 88877643
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.0094 Score=56.86 Aligned_cols=107 Identities=20% Similarity=0.082 Sum_probs=67.7
Q ss_pred CCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHH--HhcC
Q 003957 627 SELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDA--ASKM 704 (784)
Q Consensus 627 ~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~--l~~l 704 (784)
.+...+||++|.+.... ...++++|.+|.+..|. |+...+.--.-+++|+.|.+.+|++ ..+.+. +..|
T Consensus 42 d~~d~iDLtdNdl~~l~----~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi----~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD----NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSI----QELGDLDPLASC 112 (233)
T ss_pred cccceecccccchhhcc----cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcch----hhhhhcchhccC
Confidence 35677777777654421 22456777888776654 6654443323577788888888866 455444 6778
Q ss_pred CCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCC
Q 003957 705 PMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCK 742 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~ 742 (784)
|+|++|.+-+|+........-. +-.+++|+.||.++-.
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 8888888888776632101111 4567888888888765
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.00052 Score=74.63 Aligned_cols=170 Identities=15% Similarity=0.096 Sum_probs=108.0
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCc
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELV 630 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~ 630 (784)
-.|+.+.++.|.+.- ++..+.++..|..|+++.|.....+..+. . --|+.|.+++ ++++..... ....+.|.
T Consensus 98 ~~Le~liLy~n~~r~--ip~~i~~L~~lt~l~ls~NqlS~lp~~lC-~-lpLkvli~sN--Nkl~~lp~~--ig~~~tl~ 169 (722)
T KOG0532|consen 98 VSLESLILYHNCIRT--IPEAICNLEALTFLDLSSNQLSHLPDGLC-D-LPLKVLIVSN--NKLTSLPEE--IGLLPTLA 169 (722)
T ss_pred HHHHHHHHHhcccee--cchhhhhhhHHHHhhhccchhhcCChhhh-c-CcceeEEEec--CccccCCcc--cccchhHH
Confidence 346666664443332 23335566778888888773222222221 1 2578888888 666532221 12456889
Q ss_pred EEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCcee
Q 003957 631 ELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLV 710 (784)
Q Consensus 631 ~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L 710 (784)
+||++.|.+.+- ...+ .++.+|+.|.+..++... .+..+. .-.|..||+++|++ ..++-.+.++..|++|
T Consensus 170 ~ld~s~nei~sl--psql-~~l~slr~l~vrRn~l~~--lp~El~-~LpLi~lDfScNki----s~iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 170 HLDVSKNEIQSL--PSQL-GYLTSLRDLNVRRNHLED--LPEELC-SLPLIRLDFSCNKI----SYLPVDFRKMRHLQVL 239 (722)
T ss_pred Hhhhhhhhhhhc--hHHh-hhHHHHHHHHHhhhhhhh--CCHHHh-CCceeeeecccCce----eecchhhhhhhhheee
Confidence 999999887662 2222 346778888888776332 122333 44589999999988 8889999999999999
Q ss_pred ccccccccCCCCCccc----ccCCCCCCEEEecCCC
Q 003957 711 SLDLCDASDGNFEIPD----YADRYSLSTVKITKCK 742 (784)
Q Consensus 711 ~L~~c~~~~~~~~l~~----~~~~~~L~~L~is~C~ 742 (784)
-|.+|+.. +-|+ .+..-=.++|+++-|.
T Consensus 240 ~LenNPLq----SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 240 QLENNPLQ----SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeccCCCC----CChHHHHhccceeeeeeecchhcc
Confidence 99999887 2233 2223346789999995
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.0024 Score=63.35 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=33.8
Q ss_pred hhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc
Q 003957 522 PAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC 586 (784)
Q Consensus 522 ~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c 586 (784)
|.+++|++|.++.+..-....+..+...+|+|++++++.|.|.+.....-++.+.+|..|++..|
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 34445555555554222223344445556677777776666665322233445556666666665
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.026 Score=40.33 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=31.0
Q ss_pred CCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCcC
Q 003957 705 PMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~ 745 (784)
++|++|++++|... .+|+ +.++++|+.|++++|+..+
T Consensus 1 ~~L~~L~l~~N~i~----~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT----DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S----SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc----ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999998777 6788 9999999999999998654
|
... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.0062 Score=60.73 Aligned_cols=115 Identities=25% Similarity=0.244 Sum_probs=69.3
Q ss_pred CCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCC
Q 003957 575 LRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWP 653 (784)
Q Consensus 575 l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~ 653 (784)
+.+.++|+.++| ..|..+ ...+|.|+.|.|+- |+|+.. ..+..|++|++|.|..|.+.+-.-+.++ .++|
T Consensus 18 l~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSv--NkIssL---~pl~rCtrLkElYLRkN~I~sldEL~YL-knlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSV--NKISSL---APLQRCTRLKELYLRKNCIESLDELEYL-KNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHHHH---HHhcccceeEEeec--cccccc---hhHHHHHHHHHHHHHhcccccHHHHHHH-hcCc
Confidence 446777887777 344433 34557888888877 566532 2334677888888887776553333333 5788
Q ss_pred CCcEEeecCCCCCCHHHH----HHhhCCCCCCEEEcccCCCCCChhHHHHHHh
Q 003957 654 GLISLHLEECGDITAYGV----TSLFNCIALEDLLLRHNGPGIPRDFILDAAS 702 (784)
Q Consensus 654 ~L~~L~L~~c~~i~~~~~----~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~ 702 (784)
+|+.|.|..|+-....|. ..+.-+|+|+.||=.. ++.+...+++.
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~----VteeEle~ALr 137 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP----VTEEELEEALR 137 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhccCcc----ccHHHHHHHHh
Confidence 888888887664333222 1233577888776221 24466666654
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.049 Score=58.91 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=78.0
Q ss_pred hcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEee-eeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCC
Q 003957 523 AIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLY-FQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPN 601 (784)
Q Consensus 523 ~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~-~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~ 601 (784)
.+.+++.|++++| .+ ..++...++|++|.++ |+.++. ++..+ .++|+.|++++|.... ...++
T Consensus 50 ~~~~l~~L~Is~c-~L-----~sLP~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~------sLP~s 113 (426)
T PRK15386 50 EARASGRLYIKDC-DI-----ESLPVLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEIS------GLPES 113 (426)
T ss_pred HhcCCCEEEeCCC-CC-----cccCCCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCccccc------ccccc
Confidence 4678999999988 33 3334434479999994 565533 12111 2478999999883211 12257
Q ss_pred ccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCC
Q 003957 602 LRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALE 681 (784)
Q Consensus 602 L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~ 681 (784)
|+.|++.. +.... +..+ .++|++|.+.+++-......... -.++|+.|.+.+|..+.. +.. -..+|+
T Consensus 114 Le~L~L~~--n~~~~--L~~L---PssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~L--P~~--LP~SLk 180 (426)
T PRK15386 114 VRSLEIKG--SATDS--IKNV---PNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIIL--PEK--LPESLQ 180 (426)
T ss_pred cceEEeCC--CCCcc--cccC---cchHhheeccccccccccccccc--cCCcccEEEecCCCcccC--ccc--ccccCc
Confidence 88888875 33321 2222 23688888865332111000100 125799999999885531 111 135788
Q ss_pred EEEcccC
Q 003957 682 DLLLRHN 688 (784)
Q Consensus 682 ~L~L~~n 688 (784)
.|+++.+
T Consensus 181 ~L~ls~n 187 (426)
T PRK15386 181 SITLHIE 187 (426)
T ss_pred EEEeccc
Confidence 8888765
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.038 Score=52.86 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=51.3
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCcc
Q 003957 385 ASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLK 463 (784)
Q Consensus 385 l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~ 463 (784)
..+...++|+++.......+ ..++.|..|.+.+|+++.+...--. .++|..|.+.+|.+...+--.-...||.|+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~l----p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNL----PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccccceecccccchhhcccC----CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 44567777777765332222 5667888888888887766533222 467888888887654433222235778888
Q ss_pred EEeccCC
Q 003957 464 YLNARGC 470 (784)
Q Consensus 464 ~L~L~~c 470 (784)
+|.+-+.
T Consensus 117 ~Ltll~N 123 (233)
T KOG1644|consen 117 YLTLLGN 123 (233)
T ss_pred eeeecCC
Confidence 8877665
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.04 Score=34.33 Aligned_cols=23 Identities=30% Similarity=0.738 Sum_probs=12.1
Q ss_pred CCCCCeEecCCCCccCHHHHHHH
Q 003957 316 CVSLGYINIKGCVSVTDVCISNL 338 (784)
Q Consensus 316 ~~~L~~L~L~~c~~l~~~~l~~l 338 (784)
|++|++|+|++|..++|.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 34555555555555555555444
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.012 Score=52.51 Aligned_cols=83 Identities=19% Similarity=0.137 Sum_probs=42.7
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPML 707 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L 707 (784)
.|+..++++|..-. ....+...++.++.|+++++. +.+...+ +..+++|+.|+++.|.+ ...++.+..+.+|
T Consensus 54 el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~ne-isdvPeE-~Aam~aLr~lNl~~N~l----~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 54 ELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNE-ISDVPEE-LAAMPALRSLNLRFNPL----NAEPRVIAPLIKL 125 (177)
T ss_pred eEEEEecccchhhh--CCHHHhhccchhhhhhcchhh-hhhchHH-HhhhHHhhhcccccCcc----ccchHHHHHHHhH
Confidence 45555555554322 122233345556666666644 5444333 55666666666666655 4444554445555
Q ss_pred ceecccccccc
Q 003957 708 RLVSLDLCDAS 718 (784)
Q Consensus 708 ~~L~L~~c~~~ 718 (784)
-.|+..++...
T Consensus 126 ~~Lds~~na~~ 136 (177)
T KOG4579|consen 126 DMLDSPENARA 136 (177)
T ss_pred HHhcCCCCccc
Confidence 55555544433
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.016 Score=57.61 Aligned_cols=113 Identities=19% Similarity=0.111 Sum_probs=74.6
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhh-CCCCCCEEEcccCCCCCChhHHHHHHhc
Q 003957 625 NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLF-NCIALEDLLLRHNGPGIPRDFILDAASK 703 (784)
Q Consensus 625 ~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~-~~~~L~~L~L~~n~~gl~~~~~~~~l~~ 703 (784)
.+..|+.|++.++...+-.. + -.+|+|+.|.++.+..-...++..+. .+|+|+.|+++.|++ .+-.-..-+..
T Consensus 41 ~~~~le~ls~~n~gltt~~~---~-P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki--~~lstl~pl~~ 114 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN---F-PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI--KDLSTLRPLKE 114 (260)
T ss_pred cccchhhhhhhccceeeccc---C-CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc--ccccccchhhh
Confidence 34577888888887765211 1 23788999999988543334444443 689999999999976 32122233677
Q ss_pred CCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCC
Q 003957 704 MPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKS 743 (784)
Q Consensus 704 l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~ 743 (784)
+.+|..|++.+|....-.-.-.. |.-+++|++||-..+..
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 88899999999987631100111 66778888888766553
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.0046 Score=68.74 Aligned_cols=15 Identities=13% Similarity=0.096 Sum_probs=8.2
Q ss_pred cCCCCCCEEEecCCC
Q 003957 728 ADRYSLSTVKITKCK 742 (784)
Q Consensus 728 ~~~~~L~~L~is~C~ 742 (784)
...+.++.+.+..++
T Consensus 302 ~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 302 SAAPTLVTLTLELNP 316 (414)
T ss_pred cccccccccccccCc
Confidence 344555666665554
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.0041 Score=67.92 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=40.1
Q ss_pred chhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhc
Q 003957 379 RNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHG 458 (784)
Q Consensus 379 ~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~ 458 (784)
|.....+.+|+.|.+..+... .....+ . .-.|..|+++.|+++...+.---...|++|.|.+|.+.........++
T Consensus 182 psql~~l~slr~l~vrRn~l~--~lp~El-~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kG 257 (722)
T KOG0532|consen 182 PSQLGYLTSLRDLNVRRNHLE--DLPEEL-C-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKG 257 (722)
T ss_pred hHHhhhHHHHHHHHHhhhhhh--hCCHHH-h-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhcc
Confidence 333455555666666555432 111112 1 334556666666555444322224566666666665544333222222
Q ss_pred C-CCccEEeccCC
Q 003957 459 N-SGLKYLNARGC 470 (784)
Q Consensus 459 l-~~L~~L~L~~c 470 (784)
. .=.++|+..-|
T Consensus 258 kVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 258 KVHIFKYLSTQAC 270 (722)
T ss_pred ceeeeeeecchhc
Confidence 2 22455555544
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.09 Score=32.71 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=17.8
Q ss_pred CCccceEecccccccChHHHHHHH
Q 003957 208 FPSLRTIKAAYHLDFKTLNLHKLV 231 (784)
Q Consensus 208 ~~~L~~L~L~~~~~l~~~~l~~l~ 231 (784)
|++|++|++++|.+++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 567777777777777777777665
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.02 Score=63.70 Aligned_cols=173 Identities=23% Similarity=0.204 Sum_probs=97.3
Q ss_pred CCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChH-HHHHHHhcCCC
Q 003957 550 CPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNN-DLVILTQNCSE 628 (784)
Q Consensus 550 ~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~-~l~~l~~~~~~ 628 (784)
+..++.+.+..+.+.. ...-+..+++|+.|++.++... .+......+++|++|++++ +.|++. ++.. ++.
T Consensus 71 l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~--N~I~~i~~l~~----l~~ 141 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSF--NKITKLEGLST----LTL 141 (414)
T ss_pred hHhHHhhccchhhhhh--hhcccccccceeeeeccccchh-hcccchhhhhcchheeccc--cccccccchhh----ccc
Confidence 4456666666666554 2223456678888888777211 1111123457888888888 667642 3322 345
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHH-HHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCC
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGV-TSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPML 707 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~-~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L 707 (784)
|+.|++++|.+..-.. . ..++.|+.+++.+|. ++.... . ...+.+++.+++..|.+ ..+ +.+..+..+
T Consensus 142 L~~L~l~~N~i~~~~~---~-~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i----~~i-~~~~~~~~l 210 (414)
T KOG0531|consen 142 LKELNLSGNLISDISG---L-ESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSI----REI-EGLDLLKKL 210 (414)
T ss_pred hhhheeccCcchhccC---C-ccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCch----hcc-cchHHHHHH
Confidence 8888888887655211 1 226778888888776 443322 2 35677888888888754 211 122223334
Q ss_pred ceeccccccccCCCCCcccccCCCC--CCEEEecCCCCcCc
Q 003957 708 RLVSLDLCDASDGNFEIPDYADRYS--LSTVKITKCKSKNR 746 (784)
Q Consensus 708 ~~L~L~~c~~~~~~~~l~~~~~~~~--L~~L~is~C~~~~~ 746 (784)
..+++..+.... +.......+ |+.++++++...+.
T Consensus 211 ~~~~l~~n~i~~----~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 211 VLLSLLDNKISK----LEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred HHhhccccccee----ccCcccchhHHHHHHhcccCccccc
Confidence 444555444331 111233333 89999999987664
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.076 Score=61.34 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=57.0
Q ss_pred ccccccccccchhhhhccccCCcccccccchhhHHHHHHHHhhHhhhccCCCcchhHhHHHhheeeeeeheeccc
Q 003957 3 AMSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLTILKEIRISILPLWFAAG 77 (784)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (784)
+..+..|..+|++.|...+++++|.|.+|.++.+|++.|++.+.+.-. ..=..+++.||+.+++-.+...
T Consensus 140 v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~-----~~~~~ll~~vR~~~~~~~~l~~ 209 (534)
T PHA03098 140 IYNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKY-----KDICLILKVLRITFLSEEGIKK 209 (534)
T ss_pred HhcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhhH-----hHHHHHHhhccccccCHHHHHH
Confidence 345678999999999999999999999999999999999998764331 1224689999999887765543
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=88.23 E-value=0.35 Score=29.30 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=12.3
Q ss_pred CCCCCEEEeeCCCCCHHHHHHh
Q 003957 342 CVKLQSIIVCDTSFGVYSIRAL 363 (784)
Q Consensus 342 ~~~L~~L~Ls~~~i~~~~l~~l 363 (784)
|++|++|++++|.|++.++.++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3566666666666666666554
|
... |
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=85.75 E-value=0.79 Score=29.04 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=19.6
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEV 367 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l 367 (784)
++|+.|+|++|.+++.|...+|..+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 4688888888888888888776543
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=82.36 E-value=1.3 Score=26.70 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=10.3
Q ss_pred CCcCEEEecCCccchhhHHHH
Q 003957 435 SSLEMLDVSDTMISGAALAYM 455 (784)
Q Consensus 435 ~~L~~L~Ls~~~i~~~~l~~~ 455 (784)
++|++|+|++|.+++.+...+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 345556666666555555443
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 4e-22
Identities = 78/555 (14%), Positives = 160/555 (28%), Gaps = 104/555 (18%)
Query: 127 EKVNLSGCPQMTSAILLLSVLDSLHCLDPTSRKIFECLDKDQSRIPLGFLPIFSFEAVQE 186
V L G P L+ + P + ++E
Sbjct: 69 RSVELKGKPHFADFNLVPDGWGGY--VYPWIEAMSSSYTW-----------------LEE 109
Query: 187 VNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDP 246
+ + + + +E +KSF + + + + F T L + C L E+DL
Sbjct: 110 IRLKRMVV--TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL---- 163
Query: 247 SPVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEG-RSDMC 305
+ + + H + + + L + S++
Sbjct: 164 ------------------------RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS 199
Query: 306 DADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCS 365
+ LE + C +L + + V + ++ L++R +L+ + G A
Sbjct: 200 FSALERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQLEEL-------GTGGYTAEVR 250
Query: 366 EVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLA 425
Y S ++ ++ YL + +L +L LS +
Sbjct: 251 PDVYSGLSVALSGC--------KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302
Query: 426 DKALYNFSG--SSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNG--- 480
L L+ L V D I A L + L+ L + + +
Sbjct: 303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361
Query: 481 RGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLG 539
+G+ S C KLE ++ + +L + + + +
Sbjct: 362 QGLVSVSMGC----------PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA 411
Query: 540 EDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPL 599
D L L P D I+E + L+ L++ L D
Sbjct: 412 PDYLTLEPL----------------DIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYA 455
Query: 600 PNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLH 659
+ L + ++ + + C L +L + C + L + + SL
Sbjct: 456 KKMEMLSVAFAG--DSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSLW 512
Query: 660 LEECGDITAYGVTSL 674
+ C ++ L
Sbjct: 513 MSSC-SVSFGACKLL 526
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 99.2 bits (247), Expect = 1e-21
Identities = 86/535 (16%), Positives = 169/535 (31%), Gaps = 79/535 (14%)
Query: 224 TLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSV 283
++ ++++ P + V+L P + L+P G +
Sbjct: 55 AVSPATVIRRFPKVRSVELKGKPH----------FADFNLVPD-------GWGGYVYPWI 97
Query: 284 YHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCV 343
S + + ++ L+ R + D LE I+K + + + C + ++ + C
Sbjct: 98 EAMSSSYTWLEEIRLK-RMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR 156
Query: 344 KLQSI------IVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLAS------NLQML 391
L+ + + + + + + N S L + +F+ L NL+ L
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216
Query: 392 HMACCNGVDGMYLLELMCQARKLKSLCLSG-----TQLADKALYNFSGSSLEMLDVS-DT 445
+ ++ L L+ +A +L+ L G L E+ +S
Sbjct: 217 KLNRAVPLEK--LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274
Query: 446 MISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEE 505
A L + S L LN DL L + KL+
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQ----------------SYDLVKLLCQCPKLQR 318
Query: 506 IVLGWGFSFLSLEVLKPAIKLLHSITVG--------LGGSLGEDALRLLPTTCPMLELVV 557
+ + LEVL K L + V +L E L + CP LE V+
Sbjct: 319 LWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378
Query: 558 LYFQVMSDSIIINILESLRRLQVLAICHC-----------LGDLSISSFKLPLPNLRKLK 606
+ + M+++ +I I + + +C D+ + +LR+L
Sbjct: 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438
Query: 607 LERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDI 666
L +T+ + ++ LS+ S + G L L + +C
Sbjct: 439 LSG---LLTDKVFEYIGTYAKKMEMLSV-AFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494
Query: 667 TAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGN 721
+ + + L + + KMP L + +D A D
Sbjct: 495 DKALLANASKLETMRSLWMSSC--SVSFGACKLLGQKMPKLNVEVIDERGAPDSR 547
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 3e-18
Identities = 77/473 (16%), Positives = 154/473 (32%), Gaps = 60/473 (12%)
Query: 196 HLESAVECFSKSFPSLRTIKAAYHLDFKTLN---LHKLVQKCPMLCEVDLTVDPSPVIPT 252
++ +E S S+ L I L + L + + + L+
Sbjct: 92 YVYPWIEAMSSSYTWLEEI----RLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG 147
Query: 253 KVSVVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEG-RSDMCDADLEF 311
++ ++ L L L +S D S + H + + + L + S++ + LE
Sbjct: 148 LAAIAATCRNLKELDLRESDVDDVSG--HWLSHFPDTYTSLVSLNISCLASEVSFSALER 205
Query: 312 ISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCN 371
+ C +L + + V + ++ L++R +L+ + G A Y
Sbjct: 206 LVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQLEEL-------GTGGYTAEVRPDVYSG 256
Query: 372 SSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYN 431
S ++ ++ YL + +L +L LS + L
Sbjct: 257 LSVALSGC--------KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVK 308
Query: 432 FSG--SSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNG---RGIEFS 486
L+ L V D I A L + L+ L + + + +G+
Sbjct: 309 LLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367
Query: 487 SYPCADL--------------FAELGRTR-KLEEIVLGW----GFSFLSLEVLKPAIKLL 527
S C L + R R + L +L+LE L +
Sbjct: 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427
Query: 528 HSI-----TVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLA 582
+ L G L + + T +E++ + F SD + ++L L+ L
Sbjct: 428 VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487
Query: 583 ICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSL 634
I C GD ++ + L +R L + + ++ +L Q +L +
Sbjct: 488 IRDCPFGDKALLANASKLETMRSLWMSSCS--VSFGACKLLGQKMPKLNVEVI 538
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 9e-09
Identities = 51/405 (12%), Positives = 113/405 (27%), Gaps = 64/405 (15%)
Query: 80 RSSYFSKLSDESVNSIL----RLVKVHPACLIKVLEDVELKHLRIRLTEYSEKVNLSGCP 135
R S +S ++ LV ++ +CL + L+ L R + + L+
Sbjct: 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL-KSLKLNRAV 222
Query: 136 QMTSAILLLSVLDSLHCLDPTSRKIFECLDKDQSRIPLGFLPIFSFEAVQEVNICKCHAL 195
+ LL L +E+ A
Sbjct: 223 PLEKLATLLQRAPQL----------------------------------EELGTGGYTAE 248
Query: 196 HLESAVECFSKSFPSLRTIKAAYHLDFKTLN-LHKLVQKCPMLCEVDLTVDPSPVIPTK- 253
S + + ++ L + C L ++L+ + V
Sbjct: 249 VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSY--ATVQSYDL 306
Query: 254 VSVVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKI-----TKLTLEGRSDMCDAD 308
V ++ L L + I D+ L + + ++ +E + +
Sbjct: 307 VKLLCQCPKLQRLWVLDYI-EDAGLEVLA--STCKDLRELRVFPSEPFVMEPNVALTEQG 363
Query: 309 LEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVP 368
L +S C L + + C +T+ + + R + +C +
Sbjct: 364 LVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIE--------PKAPDY 414
Query: 369 YCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKA 428
G +L+ L ++ + + K++ L ++ +D
Sbjct: 415 LTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAK--KMEMLSVAFAGDSDLG 472
Query: 429 LYNFSGS--SLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCK 471
+++ SL L++ D AL ++ L C
Sbjct: 473 MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 6e-05
Identities = 49/346 (14%), Positives = 109/346 (31%), Gaps = 36/346 (10%)
Query: 88 SDESVNSILR----LVKVHPACLIKVLEDVELKHLRIRLTEYSEKVNLSGCPQMTSAIL- 142
E + ++L+ L ++ + L + L+ E LSG A L
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP 282
Query: 143 -LLSVLDSLHCL--------DPTSRKIFECLDKDQSRIPLGFLPIFSFEAV-------QE 186
+ SV L L K+ K Q L ++ E + +E
Sbjct: 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRE 342
Query: 187 VNICKCHALHLES-------AVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCE 239
+ + +E + S P L ++ + L + + P +
Sbjct: 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTR 401
Query: 240 VDLTVDPSPVIPTKVSVVSSSSALMPLVLN----KSIAGDSSLYATSVYHSGPSPSKITK 295
L + P P +++ +V + + ++ L + G K+
Sbjct: 402 FRLCII-EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEM 460
Query: 296 LTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSF 355
L++ + D + + C SL + I+ C D + + ++S+ + S
Sbjct: 461 LSV-AFAGDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCSV 518
Query: 356 GVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDG 401
+ + L ++P N + + ++ + + + V G
Sbjct: 519 SFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTVAG 564
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 5e-22
Identities = 72/521 (13%), Positives = 159/521 (30%), Gaps = 43/521 (8%)
Query: 185 QEVNICKCHALHLESAVECFS---------KSFPSLRTIKAAYHLDFKTLNLHKLVQKCP 235
+ V + C+ + F K ++ + + T + ++
Sbjct: 53 EHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR 112
Query: 236 MLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITK 295
L V +I + + + + A + + S + KI
Sbjct: 113 QLKSVHF----RRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKT 168
Query: 296 LTLEG--RSDMCDADLEFISKYCVSLGYINI--KGCVSVTDVCISNLIRRCVKLQSIIVC 351
L +E S+ L ++++ SL +N ++ + + R C L S+ V
Sbjct: 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228
Query: 352 D----TSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLEL 407
D G + A E + + G + L + + + L
Sbjct: 229 DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL 288
Query: 408 MCQARKLKSLCLSGTQLADKALYNFSGS--SLEMLDVSDTMISGAALAYMVHGNSGLKYL 465
A +++ L L L + +LE+L+ + I L + LK L
Sbjct: 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRL 347
Query: 466 NARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVL-GWGFSFLSLEVLKPAI 524
+ E + L A ++LE + + + SLE + +
Sbjct: 348 RIERGADEQGMEDEEGLVSQRG-----LIALAQGCQELEYMAVYVSDITNESLESIGTYL 402
Query: 525 KLLHSITV-------GLGGSLGEDALRLLPTTCPMLELVVLYF--QVMSDSIIINILESL 575
K L + + ++ +R L C L Y ++D + I +
Sbjct: 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462
Query: 576 RRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSL 634
++ + + + D + F PNL+KL++ + + L L +
Sbjct: 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC--CFSERAIAAAVTKLPSLRYLWV 520
Query: 635 VGCTLLSSDSQLI-ISQGWPGLISLHLEECGDITAYGVTSL 674
G + L+ +++ + + + ++ G
Sbjct: 521 QGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIRE 561
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 98.9 bits (246), Expect = 1e-21
Identities = 76/528 (14%), Positives = 164/528 (31%), Gaps = 84/528 (15%)
Query: 224 TLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSV 283
T +L ++ P L + L P ++ L+P V
Sbjct: 62 TATPDRLSRRFPNLRSLKLKGKPR----------AAMFNLIPENW-------GGYVTPWV 104
Query: 284 YHSGPSPSKITKLTLEGRSDMCDADLEFISK-YCVSLGYINIKGCVSVTDVCISNLIRRC 342
+ ++ + R + D DL+ ++K L + + C T + +++ C
Sbjct: 105 TEISNNLRQLKSVHFR-RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHC 163
Query: 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCN-------SSALCGKRNFNTLAS------NLQ 389
K++++++ ++SF + L + K + L + +L
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223
Query: 390 MLHMACCNGVDGMYLLELMCQARKLKSLCLSG-TQLADKALYNFSGSSLEMLDVSDTMIS 448
+ + ++ + + + L+ + +K + L L +S +
Sbjct: 224 SVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY--MG 281
Query: 449 GAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVL 508
+ + + ++ L+ D + + LE +
Sbjct: 282 PNEMPILFPFAAQIRKLDLLYALLE----------------TEDHCTLIQKCPNLEVLET 325
Query: 509 GWGFSFLSLEVLKPAIKLLHSITVG----------LGGSLGEDALRLLPTTCPMLELVVL 558
LEVL K L + + G + + L L C LE + +
Sbjct: 326 RNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385
Query: 559 YFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNND 618
Y +++ + +I L+ L + ER+T +N
Sbjct: 386 YVSDITNESLESIGTYLKNLCDFRLVLLDR------------------EERITDLPLDNG 427
Query: 619 LVILTQNCSELVELSL-VGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLF-N 676
+ L C +L + + L+ I Q P + + L G + G+
Sbjct: 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRG 486
Query: 677 CIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEI 724
C L+ L +R I A +K+P LR + + AS ++
Sbjct: 487 CPNLQKLEMRGC--CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDL 532
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 86.1 bits (213), Expect = 1e-17
Identities = 69/546 (12%), Positives = 152/546 (27%), Gaps = 115/546 (21%)
Query: 112 DVELKHLRIRLTEYSEKVNLSGCPQMTSAILLLSVLDSLHCLDPTSRKIFECLDKDQSRI 171
D++L L + E + L C T+ LLS++ +
Sbjct: 126 DLDLDRLAKARADDLETLKLDKCSGFTTD-GLLSIVTHCRKI------------------ 166
Query: 172 PLGFLPIFSFEAVQEVNICKCHALHLE-SAVECFSKSFPSLRTIKAAY--HLDFKTLNLH 228
+ + + + + + ++ SL + +L
Sbjct: 167 -------------KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE 213
Query: 229 KLVQKCPMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSVYHSGP 288
+ + C L V + ++ + G S +
Sbjct: 214 TIARNCRSLVSVKV---------GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264
Query: 289 SPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSI 348
+ KL G S M ++ + + + +++ + T+ + LI++C L+ +
Sbjct: 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT-LIQKCPNLEVL 323
Query: 349 IVCD--TSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLE 406
+ G+ + C L+ L + GM E
Sbjct: 324 ETRNVIGDRGLEVLAQYC---------------------KQLKRLRIERGADEQGMEDEE 362
Query: 407 LMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLN 466
+ R L +L LE + V + I+ +L + L
Sbjct: 363 GLVSQRGLIALAQGCQ-------------ELEYMAVYVSDITNESLESIGTYLKNLCDFR 409
Query: 467 ARGCKNLFQQESNGRGIEFSSYPCADLFAELGRT-RKLEEIVLGWGFSFLSLEVLKPAIK 525
+ + P + L +KL
Sbjct: 410 LVLLDREER---------ITDLPLDNGVRSLLIGCKKLRRFAFYLR-------------- 446
Query: 526 LLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICH 585
G L + L + P + ++L + SD ++ LQ L +
Sbjct: 447 ---------QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497
Query: 586 C-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDS 644
C + +I++ LP+LR L ++ MT DL+ + + + + ++
Sbjct: 498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQG 557
Query: 645 QLIISQ 650
++ +
Sbjct: 558 EIREME 563
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 1e-12
Identities = 34/164 (20%), Positives = 56/164 (34%), Gaps = 8/164 (4%)
Query: 550 CPMLELVVLYF-QVMSDSIIINILESLRRLQVLAICHC--LGDLSISS-FKLPLPNLRKL 605
L + L S+ + +L S RL L + C + + + +L
Sbjct: 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200
Query: 606 KLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGD 665
L + +DL L + C LV L L +L +D Q L L L C D
Sbjct: 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL-NYLQHLSLSRCYD 259
Query: 666 ITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRL 709
I + L L+ L + +P + +P L++
Sbjct: 260 IIPETLLELGEIPTLKTLQVFGI---VPDGTLQLLKEALPHLQI 300
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 29/177 (16%), Positives = 56/177 (31%), Gaps = 21/177 (11%)
Query: 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRR-CVKLQSII 349
S + +L L G S + L+ + C L +N+ C T+ + + + +
Sbjct: 142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201
Query: 350 VCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMC 409
+ + L + V C NL L ++ + E
Sbjct: 202 LSGYRKNL-QKSDLSTLVRRC---------------PNLVHLDLSDSVMLKNDCFQEFF- 244
Query: 410 QARKLKSLCLSG-TQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKY 464
Q L+ L LS + + L +L+ L V ++ L + L+
Sbjct: 245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG-IVPDGTLQLLKEALPHLQI 300
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 5e-05
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 4/157 (2%)
Query: 560 FQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDL 619
+ ++ ++ L V+A C R ++ + + L
Sbjct: 52 LDLTGKNLHPDVTGRLLSQGVIAFR-CPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 110
Query: 620 VILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLF-NCI 678
+ CS+L LSL G L SD + L+ L+L C + + + +L +C
Sbjct: 111 HGILSQCSKLQNLSLEGLRL--SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168
Query: 679 ALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLC 715
L++L L + + A + ++L
Sbjct: 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 5e-11
Identities = 95/594 (15%), Positives = 164/594 (27%), Gaps = 200/594 (33%)
Query: 218 YHLDFKTLNLHKLVQKCPMLCEV-------DLTVD-----PSPVIPTKV--------SVV 257
+H+DF+T H+ + + V + P ++ + V
Sbjct: 5 HHMDFET-GEHQY--QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 258 SSSSALMPLVLNK-----------SIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCD 306
S + L +L+K + + + + PS +T++ +E R + +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 307 ADLEFISKYCVS-----------L------GYINI---KGC---VSVTDVCISNLIRRCV 343
D + +KY VS L + I G DVC
Sbjct: 122 -DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC------LSY 174
Query: 344 KLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQML--HMAC--CNGV 399
K+Q C F ++ + + CNS T+ LQ L + +
Sbjct: 175 KVQ----CKMDFKIFWLN-----LKNCNSP--------ETVLEMLQKLLYQIDPNWTSRS 217
Query: 400 DGMYLLELMCQARK--LKSLCLSGTQLADKALYNFSGSSLEMLD-VSDTMISGAALAYMV 456
D ++L + + L+ L L K N L +L V +
Sbjct: 218 DHSSNIKLRIHSIQAELRRL------LKSKPYEN----CLLVLLNVQNAKA--------- 258
Query: 457 HGNSGLKYLNARGCK--------NLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEI-- 506
N CK + S S + +++ +
Sbjct: 259 -----WNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP----DEVKSLLL 308
Query: 507 -VLGWGFSFLSLEVLK--PAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVM 563
L L EVL P SI + S+ + + V
Sbjct: 309 KYLDCRPQDLPREVLTTNP---RRLSI---IAESIRDGLATWDN-----------WKHVN 351
Query: 564 SDSIIINILESLRRLQVLAICHCLGDLSI--SSFKLPLPNLRKLKLERVTPWMTNNDLVI 621
D + I SL L+ LS+ S +P L + W D++
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-------W---FDVI- 400
Query: 622 LTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALE 681
V + + S L+ Q IS+ I L + LE
Sbjct: 401 -----KSDVMVVVNKLHKYS----LVEKQPKESTISIP-----SI------YLELKVKLE 440
Query: 682 DLLLRHNGPGIPRDFILDAASKMPMLRLV-SLDLCDASDGNFEIPDYADRYSLS 734
+ H +V ++ D + IP Y D+Y S
Sbjct: 441 NEYALHR-------------------SIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 8e-11
Identities = 64/364 (17%), Positives = 111/364 (30%), Gaps = 94/364 (25%)
Query: 474 FQQESNGRGIEFSSY-PCAD-------LFAELGRTR-----KLEEIVLGWGFSFLSLEVL 520
+ E + Y D +FA+ +R KL + +L L
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ----------ALLEL 147
Query: 521 KPAIKL-LHSITVGLGGS----LGEDALRLLPTTCPMLELVVLYFQV--------MSDSI 567
+PA + + G+ GS + D C M F++ S
Sbjct: 148 RPAKNVLID----GVLGSGKTWVALDVCLSYKVQCKM------DFKIFWLNLKNCNSPET 197
Query: 568 IINILESLRRLQVLAICHCLGDLSISSFKLPLP------NLRKLKLERVTPWMTNNDLVI 621
++ +L+ L I S S + L LR+L + N L++
Sbjct: 198 VLEMLQKLLYQ----IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE----NCLLV 249
Query: 622 L--TQNCSELVELSLVGCTLL--SSDSQLI--ISQGWPGLISLHLEECGDITAYGVTSLF 675
L QN ++ + C +L + Q+ +S ISL + L
Sbjct: 250 LLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 676 NCIALEDLLLRHNGPGI-PRDFILDAASKMPML------RLVSLD----LCDASDGNFEI 724
+ L PR + A S L + V+ D + ++S E
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 725 PDYADRY-SLS----TVKITKCKSKNRNLCHNWSEARRQ------SSVHKESLVLVWNSK 773
+Y + LS + I L W + + + +HK SLV +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPT-----ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 774 NLIR 777
+ I
Sbjct: 424 STIS 427
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 4e-08
Identities = 99/660 (15%), Positives = 168/660 (25%), Gaps = 231/660 (35%)
Query: 114 ELKH-----LRIRLTEYSEKVNLSGCPQMTSAILLLSVLDSLHCLDPT---SRKIFECLD 165
E ++ L + + + + M +IL +D + + ++F L
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 166 KDQSRIPLGFLPIFSFEAVQEVNICKCHALHLES-AVECFSKSFPSLRTIKAAYHLDFKT 224
Q + F E V +N + + E PS+ T D +
Sbjct: 73 SKQEEMVQKF-----VEEVLRIN----YKFLMSPIKTEQRQ---PSMMTRMYIEQRD-RL 119
Query: 225 LNLHKLVQKCPMLCEVDLTVDPSPVIPTKVS----VVSSSSALMPLVLNKSIAGDSSLYA 280
N D VS + AL+ L
Sbjct: 120 YN------------------DNQVFAKYNVSRLQPYLKLRQALLEL-------------- 147
Query: 281 TSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGC---VSVTDVCISN 337
P+K + ++G + G DVC
Sbjct: 148 --------RPAK--NVLIDG---V--------------------LGSGKTWVALDVC--- 171
Query: 338 LIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQML--HMAC 395
K+Q C F ++ + + CNS T+ LQ L +
Sbjct: 172 ---LSYKVQ----CKMDFKIFWLN-----LKNCNSP--------ETVLEMLQKLLYQIDP 211
Query: 396 --CNGVDGMYLLELMCQARK--LKSLCLSGTQLADKALYNFSGSSLEMLD-VSDTMISGA 450
+ D ++L + + L+ L L K N L +L V +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRL------LKSKPYEN----CLLVLLNVQNAKA--- 258
Query: 451 ALAYMVHGNSGLKYLNARGCK--------NLFQQESNGRGIEFSSYPCADLFAELGRTRK 502
N CK + S S + +
Sbjct: 259 -----------WNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP----DE 302
Query: 503 LEEI---VLGWGFSFLSLEVLK--PAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVV 557
++ + L L EVL P SI + S+ +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNP---RRLSI---IAESIRDGLATWDN---------- 346
Query: 558 LYFQVMSDSIIINILESLRRLQVLAICHCLGDLSI--SSFKLPLPNLRKLKLERVTPWMT 615
+ V D + I SL L+ LS+ S +P L + W
Sbjct: 347 -WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-------W-- 396
Query: 616 NNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLF 675
D++ V + + S L+ Q IS+ I L
Sbjct: 397 -FDVI------KSDVMVVVNKLHKYS----LVEKQPKESTISIP-----SIYLELKVKLE 440
Query: 676 NCIALEDLLLRH---------NGPGIPRD------FI------LDAASKMPMLRLVSLDL 714
N AL ++ H + P I ++ +M + R+V LD
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 7e-06
Identities = 67/421 (15%), Positives = 115/421 (27%), Gaps = 152/421 (36%)
Query: 15 SLLLECVKHPSLTVDSEMHLSDA-----LLIWIDANIAQLESSNRVEDDLTILKEIRISI 69
L H SL M L+ LL ++D R +D L ++
Sbjct: 280 FLSAATTTHISL-DHHSMTLTPDEVKSLLLKYLD---------CRPQD----LPREVLTT 325
Query: 70 LPLW---FAAGKR----RSSYFSKLSDESVNSILRLVKVHPACLIKVLEDVELKHLRIRL 122
P A R + ++ + + +I+ + L VLE E + +
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE------SSL-NVLEPAEYRKM---- 374
Query: 123 TEYSEKVNLSGCPQMTSAILLLSVLDSLHCLDPTSRKIFECLDKDQSRIPLGFLPIF--- 179
+ LS +F + IP L +
Sbjct: 375 --FDR---LS---------------------------VFP----PSAHIPTILLSLIWFD 398
Query: 180 -SFEAVQEVNICKCHALHLESAVECFSKSF----PSLRTIKAAYHLDFKT-----LNLHK 229
V V + K H S VE K PS+ +L+ K LH+
Sbjct: 399 VIKSDVMVV-VNKLHKY---SLVEKQPKESTISIPSI-------YLELKVKLENEYALHR 447
Query: 230 -LVQKCPMLCEVDLTVDPSPVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSVYHSGP 288
+V + D S L+P L D Y+ +H
Sbjct: 448 SIVDHYNIPKTFD------------------SDDLIPPYL------DQYFYSHIGHH--- 480
Query: 289 SPSKITKLTLEGRSDMCDA---DLEFI-SKYCVSLGYINIKGCVSVTDVCISNLIRRCVK 344
+ + R + D F+ K I I N +++
Sbjct: 481 ----LKNIEHPERMTLFRMVFLDFRFLEQK-------IRHDSTAWNASGSILNTLQQLKF 529
Query: 345 LQSIIVCDTSFGVYS--IRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGM 402
+ I CD Y + A+ +P + +C K +L +A + +
Sbjct: 530 YKPYI-CDND-PKYERLVNAILDFLPKIEENLICSK--------YTDLLRIALMAEDEAI 579
Query: 403 Y 403
+
Sbjct: 580 F 580
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 593 SSFKLPLPNLRKLKLERVTPWMT--NNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQ 650
LP L K K++ + + + + + ++ L C + +SQ
Sbjct: 49 DYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ 108
Query: 651 G---WPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRH 687
++ + + CG++T G+ +L + L+ L L
Sbjct: 109 LENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 5/114 (4%)
Query: 576 RRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQ---NCSELVEL 632
++Q + L + K++L + ++ + L L+Q ++E+
Sbjct: 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCK-CHYIEDGCLERLSQLENLQKSMLEM 119
Query: 633 SLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLR 686
++ C + +D +I + L L L + + +L L L+
Sbjct: 120 EIISCGNV-TDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 9e-04
Identities = 76/474 (16%), Positives = 143/474 (30%), Gaps = 116/474 (24%)
Query: 318 SLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCG 377
+ ++I+ ++D + L+ + Q + + D + + S +
Sbjct: 4 DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN------- 55
Query: 378 KRNFNTLASNLQMLHMACCN-GVDGMYLL--ELMCQARKLKSLCLSGTQLADKALYNFSG 434
L L++ G G++ + L + K++ L L L S
Sbjct: 56 --------PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107
Query: 435 -----SSLEMLDVSDTMISGAALAY----MVHGNSGLKYLNARGCKNLFQQESNGRGIEF 485
+L+ L +SD ++ A L ++ L+ L C
Sbjct: 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-------------L 154
Query: 486 SSYPCADLFAELGRTRKLEEIVLGW------GFSFLSLEVLKPAIKLLHSITVGLGG-SL 538
S+ C L + L +E+ + G L + +L + L +
Sbjct: 155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE---ALKLESCGV 211
Query: 539 GEDALRLLP---TTCPMLELVVLYFQVMSDSIIINILESLR----RLQVLAICHC-LGD- 589
D R L + L + L + D + + L RL+ L I C +
Sbjct: 212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271
Query: 590 --LSISSFKLPLPNLRKLKLERVTPWMTNNDL----------VILTQNCSELVELSLVGC 637
+ +L++L L N+L +L C L L + C
Sbjct: 272 GCGDLCRVLRAKESLKELSL-------AGNELGDEGARLLCETLLEPGCQ-LESLWVKSC 323
Query: 638 TL-----------LSSDSQLI--------------------ISQGWPGLISLHLEECGDI 666
+ L+ + L+ + Q L L L +C +
Sbjct: 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-V 382
Query: 667 TAYGVTS----LFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCD 716
+ +S L +L +L L +N G L + + P L L L D
Sbjct: 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 784 | |||
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.98 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.97 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.97 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.97 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.97 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.96 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.96 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.96 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.95 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.95 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.95 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.95 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.95 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.94 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.94 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.92 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.92 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.92 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.91 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.9 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.89 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.89 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.89 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.89 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.88 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.88 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.88 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.88 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.87 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.86 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.86 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.86 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.85 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.84 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.81 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.8 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.8 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.79 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.79 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.78 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.78 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.77 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.76 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.76 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.75 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.74 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.74 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.72 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.71 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.66 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.61 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.61 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.61 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.6 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.59 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.58 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.58 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.57 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.55 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.55 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.55 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.54 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.52 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.51 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.5 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.5 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.49 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.49 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.48 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.48 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.47 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.45 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.44 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.41 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.41 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.41 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.41 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.37 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.35 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.3 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.29 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.25 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.25 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.24 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.22 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.2 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.19 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.19 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.18 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.15 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.15 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.14 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.13 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.1 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.1 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.09 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.09 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.07 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.05 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.01 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.01 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.01 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.98 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.97 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.92 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.92 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.9 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.87 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.85 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.83 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.83 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.83 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.82 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.81 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.77 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.75 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.73 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.72 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.72 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.71 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.7 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.69 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.68 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.66 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.63 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.63 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.63 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.59 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.57 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.57 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.55 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.49 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.46 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.39 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.35 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.33 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.3 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.3 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.27 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.23 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.23 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.22 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.21 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.15 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.05 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.05 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.05 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.98 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 97.92 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.84 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.83 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.57 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.56 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.54 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.53 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.47 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.01 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.0 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 96.93 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.44 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 95.7 | |
| 3i3n_A | 279 | Kelch-like protein 11; structural genomics, BTB, K | 94.09 | |
| 3hve_A | 256 | Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis | 93.35 | |
| 2eqx_A | 105 | Kelch repeat and BTB domain-containing protein 4; | 83.34 |
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-30 Score=298.19 Aligned_cols=387 Identities=16% Similarity=0.167 Sum_probs=218.7
Q ss_pred CCCCccEEecCCCCCCChHHHHHHHHcCCC-CCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccC
Q 003957 289 SPSKITKLTLEGRSDMCDADLEFISKYCVS-LGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEV 367 (784)
Q Consensus 289 ~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~-L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l 367 (784)
.+++|++|+|++| .+++..+..++..+++ |++|++++|..+++.++..+..+|++|++|++++|.+++.+...
T Consensus 110 ~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~----- 183 (592)
T 3ogk_B 110 NLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW----- 183 (592)
T ss_dssp HCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH-----
T ss_pred hCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH-----
Confidence 4688888888887 5777777777776666 89999988887778888888888888888888888765432111
Q ss_pred CccCcccccccchhhhcCCCccEEEecCCCC--CCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecC
Q 003957 368 PYCNSSALCGKRNFNTLASNLQMLHMACCNG--VDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSD 444 (784)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~ 444 (784)
++.....+++|++|+++++.. ++...+..+...+++|+.|++++|.+.+.. ..+. .++|++|++++
T Consensus 184 ----------l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 184 ----------LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGS 252 (592)
T ss_dssp ----------HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECB
T ss_pred ----------HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccc
Confidence 112335677888888877654 345666666677788888877776655422 1222 45666666654
Q ss_pred Ccc--chhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEecc-ccCcccHhhhh
Q 003957 445 TMI--SGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGW-GFSFLSLEVLK 521 (784)
Q Consensus 445 ~~i--~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~ 521 (784)
+.. ........+..+++|+.|.+.++.. ..+...+..+++|++|++++ .++.......+
T Consensus 253 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~------------------~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~ 314 (592)
T 3ogk_B 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGP------------------NEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314 (592)
T ss_dssp CCCCTTCTTSSSCCCCCTTCCEEEETTCCT------------------TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred cccccchHHHHHHhhccccccccCccccch------------------hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH
Confidence 311 1011111123445555555543210 11122333455566666632 22322333334
Q ss_pred hhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEee-----------eeccChHHHHHHHhhCCCCcEEEeccc-CCh
Q 003957 522 PAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLY-----------FQVMSDSIIINILESLRRLQVLAICHC-LGD 589 (784)
Q Consensus 522 ~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~-----------~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~ 589 (784)
..+++|+.|+++ ..+.+..+..+...|++|++|+++ |+.+++.++..+..++++|++|+++.+ .++
T Consensus 315 ~~~~~L~~L~L~--~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 315 QKCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp TTCTTCCEEEEE--GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred HhCcCCCEEecc--CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence 455556666655 234445555555555666666664 455555555555555666666666433 344
Q ss_pred hHHHHhhcCCCCccEEEccC---CCCCCCh----HHHHHHHhcCCCCcEEEecCCCC-CChHHHHHHHhcCCCCcEEeec
Q 003957 590 LSISSFKLPLPNLRKLKLER---VTPWMTN----NDLVILTQNCSELVELSLVGCTL-LSSDSQLIISQGWPGLISLHLE 661 (784)
Q Consensus 590 ~~~~~l~~~~~~L~~L~L~~---c~~~l~~----~~l~~l~~~~~~L~~L~Ls~c~~-~~~~~~~~~~~~~~~L~~L~L~ 661 (784)
..+..+...+++|++|++.+ | +.+++ .++..+..+|++|+.|++++|.. +++.....+...+++|+.|+|+
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~-n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDRE-ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCC-SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC
T ss_pred HHHHHHHhhCCCCcEEEEeecCCC-ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeecc
Confidence 45555544455666666652 2 34443 24555555566666666655442 4444445555556666666666
Q ss_pred CCCCCCHHHHHHh-hCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccc
Q 003957 662 ECGDITAYGVTSL-FNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCD 716 (784)
Q Consensus 662 ~c~~i~~~~~~~l-~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~ 716 (784)
+|+ +++.++..+ .++++|+.|++++|.+ ++..+...+..+++|+.|+|++|+
T Consensus 472 ~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 472 YVG-ESDEGLMEFSRGCPNLQKLEMRGCCF--SERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCC-SSHHHHHHHHTCCTTCCEEEEESCCC--BHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCC-CCHHHHHHHHhcCcccCeeeccCCCC--cHHHHHHHHHhcCccCeeECcCCc
Confidence 554 555444443 3556666666666643 434444445556666666666665
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=293.59 Aligned_cols=407 Identities=18% Similarity=0.215 Sum_probs=265.2
Q ss_pred CCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCC
Q 003957 289 SPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVP 368 (784)
Q Consensus 289 ~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~ 368 (784)
.+++|++|+|++|. +++..+..++..+++|++|++++|..+++.++..+..+|++|++|++++|.++..+...
T Consensus 103 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~------ 175 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW------ 175 (594)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG------
T ss_pred hCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH------
Confidence 34677788887774 78888888887799999999999988888888899989999999999998766533322
Q ss_pred ccCcccccccchhhhcCCCccEEEecCCC-CCCHHHHHHHHHhCccccEEEecCCc-Cchhhhhhcc-cCCcCEEEecCC
Q 003957 369 YCNSSALCGKRNFNTLASNLQMLHMACCN-GVDGMYLLELMCQARKLKSLCLSGTQ-LADKALYNFS-GSSLEMLDVSDT 445 (784)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~-~l~~~~l~~l~~~~~~L~~L~Ls~~~-l~~~~~~~l~-~~~L~~L~Ls~~ 445 (784)
++.+...+++|++|++++|. .+++..+..+...+++|+.|++++|. +.+ ....+. .++|++|+++++
T Consensus 176 ---------l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 176 ---------LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp ---------GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBC
T ss_pred ---------HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccc
Confidence 23334578899999999886 56777888777788999999998873 322 111122 578888887665
Q ss_pred c--cchh---hHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEecc-ccCcccHhh
Q 003957 446 M--ISGA---ALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGW-GFSFLSLEV 519 (784)
Q Consensus 446 ~--i~~~---~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~ 519 (784)
. +... .+...+.++++|+.|. +...+... .+...+..+++|++|++++ .++......
T Consensus 246 ~~~~~~~~~~~l~~~l~~~~~L~~Ls--~~~~~~~~---------------~l~~~~~~~~~L~~L~L~~~~l~~~~l~~ 308 (594)
T 2p1m_B 246 TAEVRPDVYSGLSVALSGCKELRCLS--GFWDAVPA---------------YLPAVYSVCSRLTTLNLSYATVQSYDLVK 308 (594)
T ss_dssp CCCCCHHHHHHHHHHHHTCTTCCEEE--CCBTCCGG---------------GGGGGHHHHTTCCEEECTTCCCCHHHHHH
T ss_pred cCccchhhHHHHHHHHhcCCCccccc--CCcccchh---------------hHHHHHHhhCCCCEEEccCCCCCHHHHHH
Confidence 2 2221 1223446778888773 11112211 1222233466777777743 344333444
Q ss_pred hhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEe---------eeeccChHHHHHHHhhCCCCcEEEeccc-CCh
Q 003957 520 LKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVL---------YFQVMSDSIIINILESLRRLQVLAICHC-LGD 589 (784)
Q Consensus 520 ~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L---------~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~ 589 (784)
+...+++|++|++++| +++..+..+...|++|++|++ .++.+++.++..+..++++|++|.++.+ .++
T Consensus 309 ~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~ 386 (594)
T 2p1m_B 309 LLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN 386 (594)
T ss_dssp HHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH
T ss_pred HHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH
Confidence 4556677777777766 555666666666777777777 3466777777766666777777766544 455
Q ss_pred hHHHHhhcCCCCccEEEcc-----CCCCCCC----hHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEee
Q 003957 590 LSISSFKLPLPNLRKLKLE-----RVTPWMT----NNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHL 660 (784)
Q Consensus 590 ~~~~~l~~~~~~L~~L~L~-----~c~~~l~----~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L 660 (784)
..+..+...+++|++|++. +| +.++ +.++..++.+|++|+.|++++ .+++.....+...+++|+.|+|
T Consensus 387 ~~~~~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L 463 (594)
T 2p1m_B 387 AALITIARNRPNMTRFRLCIIEPKAP-DYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSV 463 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESSTTCC-CTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHhhCCCcceeEeecccCCCc-ccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeec
Confidence 5566665556777777777 55 5666 566666666777777777765 4555555556555777777777
Q ss_pred cCCCCCCHHHHHHh-hCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEEEe
Q 003957 661 EECGDITAYGVTSL-FNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKI 738 (784)
Q Consensus 661 ~~c~~i~~~~~~~l-~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~i 738 (784)
++|. +++.++..+ .++++|+.|++++|.+ ++..+...+..+++|+.|++++|+.. .. ++.. ...++.|+...+
T Consensus 464 ~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~--~~~~~~~~~~~l~~L~~L~l~~~~~~-~~-~~~~l~~~lp~l~i~~~ 538 (594)
T 2p1m_B 464 AFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF--GDKALLANASKLETMRSLWMSSCSVS-FG-ACKLLGQKMPKLNVEVI 538 (594)
T ss_dssp ESCC-SSHHHHHHHHHHCTTCCEEEEESCSC--CHHHHHHTGGGGGGSSEEEEESSCCB-HH-HHHHHHHHCTTEEEEEE
T ss_pred cCCC-CcHHHHHHHHhcCCCcCEEECcCCCC--cHHHHHHHHHhCCCCCEEeeeCCCCC-HH-HHHHHHHhCCCCEEEEe
Confidence 7766 666666665 3677777777777754 54444445566777777777777653 11 1222 234455554444
Q ss_pred c
Q 003957 739 T 739 (784)
Q Consensus 739 s 739 (784)
.
T Consensus 539 ~ 539 (594)
T 2p1m_B 539 D 539 (594)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=298.08 Aligned_cols=435 Identities=17% Similarity=0.178 Sum_probs=288.0
Q ss_pred EeCcceEEecCCCCCCChh------------hHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCC
Q 003957 180 SFEAVQEVNICKCHALHLE------------SAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPS 247 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~------------~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~ 247 (784)
++++|++|++++|+...+. .++..+...+++|++|++++| .+++..+..+...+++|++|+|+. |
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~--~ 140 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSS--C 140 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEES--C
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCC--c
Confidence 5667777777776543321 123344456777777777773 467666666666677777777773 3
Q ss_pred CCcCCceeeeecCCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChH---HHHHHHHcCCCCCeEec
Q 003957 248 PVIPTKVSVVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDA---DLEFISKYCVSLGYINI 324 (784)
Q Consensus 248 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~---~l~~l~~~~~~L~~L~L 324 (784)
..+.+.+...+ ...+++|++|+|++|. +++. .+..+...+++|++|++
T Consensus 141 ~~~~~~~l~~~----------------------------~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l 191 (594)
T 2p1m_B 141 EGFSTDGLAAI----------------------------AATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNI 191 (594)
T ss_dssp EEEEHHHHHHH----------------------------HHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEEC
T ss_pred CCCCHHHHHHH----------------------------HHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEe
Confidence 22322111100 1234677777777664 3322 23333445667777777
Q ss_pred CCCC-ccCHHHHHHHHHhCCCCCEEEeeCC-CCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCC-CCH
Q 003957 325 KGCV-SVTDVCISNLIRRCVKLQSIIVCDT-SFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNG-VDG 401 (784)
Q Consensus 325 ~~c~-~l~~~~l~~l~~~~~~L~~L~Ls~~-~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-l~~ 401 (784)
++|. .+++..+..+..++++|++|++++| .++. + +..+..+++|++|+++.+.. +..
T Consensus 192 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~--l------------------~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 192 SCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--L------------------ATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp TTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH--H------------------HHHHHHCTTCSEEECSBCCCCCCH
T ss_pred cccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH--H------------------HHHHhcCCcceEcccccccCccch
Confidence 7764 4566666666667777777777766 2222 2 23335667777777766543 222
Q ss_pred HHHH---HHHHhCccccEEE-ecCCcCchhhhhhcc--cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCcccc
Q 003957 402 MYLL---ELMCQARKLKSLC-LSGTQLADKALYNFS--GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQ 475 (784)
Q Consensus 402 ~~l~---~l~~~~~~L~~L~-Ls~~~l~~~~~~~l~--~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~ 475 (784)
..+. ..+.++++|+.|. +.+ .....+..+. +++|++|++++|.+++..+..++..+++|++|++.+| +++
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~ 327 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFWD--AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IED 327 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCBT--CCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHH
T ss_pred hhHHHHHHHHhcCCCcccccCCcc--cchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCH
Confidence 2222 2236777777772 222 2222333332 5778888888877777777777777888888888776 333
Q ss_pred ccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEe--------cCCCCCChHHHHHhh
Q 003957 476 QESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITV--------GLGGSLGEDALRLLP 547 (784)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L--------~~~~~l~~~~l~~l~ 547 (784)
.++. .+...+++|++|++ .++..+++.++..+.
T Consensus 328 ~~l~---------------------------------------~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 328 AGLE---------------------------------------VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp HHHH---------------------------------------HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred HHHH---------------------------------------HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 2211 12233555666666 345578888888888
Q ss_pred ccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEec-----cc--CC----hhHHHHhhcCCCCccEEEccCCCCCCCh
Q 003957 548 TTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAIC-----HC--LG----DLSISSFKLPLPNLRKLKLERVTPWMTN 616 (784)
Q Consensus 548 ~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls-----~c--~~----~~~~~~l~~~~~~L~~L~L~~c~~~l~~ 616 (784)
..|++|+.|.++++.+++.++..+...+++|+.|+++ +| .+ +..+..+...+++|++|++++ .+++
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~---~l~~ 445 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG---LLTD 445 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS---SCCH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC---cccH
Confidence 7899999998899999999888888889999999999 33 34 556666677789999999966 5888
Q ss_pred HHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhh-CCCCCCEEEcccCCCCCChh
Q 003957 617 NDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLF-NCIALEDLLLRHNGPGIPRD 695 (784)
Q Consensus 617 ~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~-~~~~L~~L~L~~n~~gl~~~ 695 (784)
.++..+...+++|+.|++++|.. ++.....+..+|++|+.|+|++|. +++.++..+. .+++|+.|++++|.+ ++.
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~i-~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~~--~~~ 521 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAGD-SDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSLWMSSCSV--SFG 521 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCS-SHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGSSEEEEESSCC--BHH
T ss_pred HHHHHHHHhchhccEeeccCCCC-cHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCCCEEeeeCCCC--CHH
Confidence 88888887899999999999985 555566666779999999999998 5888877654 699999999999975 645
Q ss_pred HHHHHHhcCCCCceecccccc
Q 003957 696 FILDAASKMPMLRLVSLDLCD 716 (784)
Q Consensus 696 ~~~~~l~~l~~L~~L~L~~c~ 716 (784)
.+......+|.|+...+....
T Consensus 522 ~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 522 ACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHHHhCCCCEEEEecCCC
Confidence 454445778998877776543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-30 Score=295.93 Aligned_cols=416 Identities=17% Similarity=0.171 Sum_probs=318.7
Q ss_pred CCCCccEEecCCCCCCC-------------hHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCC-CCEEEeeCCC
Q 003957 289 SPSKITKLTLEGRSDMC-------------DADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVK-LQSIIVCDTS 354 (784)
Q Consensus 289 ~l~~L~~L~Ls~~~~l~-------------~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~-L~~L~Ls~~~ 354 (784)
.+++|++|++++|..+. ...+..+...+++|++|+|++| .+++..+..+...+++ |++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCC
Confidence 45889999998765432 3356677777899999999987 5777777777766766 9999998884
Q ss_pred -CCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCC--CHHHHHHHHHhCccccEEEecCCcCc---hhh
Q 003957 355 -FGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGV--DGMYLLELMCQARKLKSLCLSGTQLA---DKA 428 (784)
Q Consensus 355 -i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l--~~~~l~~l~~~~~~L~~L~Ls~~~l~---~~~ 428 (784)
++..++..+ ...+++|++|+|++|... ....+..+...+++|+.|+++++.++ ...
T Consensus 150 ~~~~~~l~~~------------------~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~ 211 (592)
T 3ogk_B 150 GFTTDGLLSI------------------VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD 211 (592)
T ss_dssp EEEHHHHHHH------------------HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHH
T ss_pred CcCHHHHHHH------------------HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHH
Confidence 565555433 357889999999988531 11225556678899999999988776 333
Q ss_pred hhhcc--cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEE
Q 003957 429 LYNFS--GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEI 506 (784)
Q Consensus 429 ~~~l~--~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 506 (784)
+..+. +++|++|++++|.+.. +...+..+++|++|.+..+..... ....+..+..+++|+.+
T Consensus 212 l~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~--------------~~~~~~~l~~~~~L~~L 275 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIG--------------MPEKYMNLVFPRKLCRL 275 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTT--------------CTTSSSCCCCCTTCCEE
T ss_pred HHHHHhhCCCCcEEeccCccHHH--HHHHHhhhhHHHhhcccccccccc--------------hHHHHHHhhcccccccc
Confidence 33332 6899999999987665 335567889999999875422211 12233456677889999
Q ss_pred EeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecc-
Q 003957 507 VLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICH- 585 (784)
Q Consensus 507 ~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~- 585 (784)
.+... ........++.+++|++|++++|. +++..+..+...+++|++|+++ +.+++.++..++.++++|++|++++
T Consensus 276 ~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g 352 (592)
T 3ogk_B 276 GLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERG 352 (592)
T ss_dssp EETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred Ccccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecC
Confidence 98542 334445567788999999999996 8888886666779999999999 7788889999999999999999994
Q ss_pred ---------c--CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecC---CCCCCh----HHHHH
Q 003957 586 ---------C--LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVG---CTLLSS----DSQLI 647 (784)
Q Consensus 586 ---------c--~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~---c~~~~~----~~~~~ 647 (784)
| .++..+..+...+++|++|++.. +.+++.++..+...+++|++|++++ |+.+++ .....
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~--~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV--SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE--SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred ccccccccccCccCHHHHHHHHhhCccCeEEEeec--CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 4 56777777777789999999954 7899999998888899999999983 445554 34555
Q ss_pred HHhcCCCCcEEeecCCCC-CCHHHHHHhh-CCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcc
Q 003957 648 ISQGWPGLISLHLEECGD-ITAYGVTSLF-NCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIP 725 (784)
Q Consensus 648 ~~~~~~~L~~L~L~~c~~-i~~~~~~~l~-~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~ 725 (784)
+..+|++|+.|++++|.. +++.++..+. .+++|+.|++++|++ ++..++..+.++++|++|+|++|+ +++. .++
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~ 506 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE--SDEGLMEFSRGCPNLQKLEMRGCC-FSER-AIA 506 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS--SHHHHHHHHTCCTTCCEEEEESCC-CBHH-HHH
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC--CHHHHHHHHhcCcccCeeeccCCC-CcHH-HHH
Confidence 567799999999988763 8888888876 699999999999965 766777888999999999999999 4222 345
Q ss_pred c-ccCCCCCCEEEecCCCCcCccc
Q 003957 726 D-YADRYSLSTVKITKCKSKNRNL 748 (784)
Q Consensus 726 ~-~~~~~~L~~L~is~C~~~~~~~ 748 (784)
. ...+++|++|++++|+....++
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTTCT
T ss_pred HHHHhcCccCeeECcCCcCCHHHH
Confidence 5 6678999999999999766655
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=320.35 Aligned_cols=488 Identities=17% Similarity=0.139 Sum_probs=299.3
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
.+++|++|++++|.-.............+++|++|++++|. +++... . ..+++|++|+|+.+.-...
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~-~~l~~L~~L~Ls~n~l~~~--------- 215 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--V-SRCVNLEFLDVSSNNFSTG--------- 215 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--C-TTCTTCCEEECCSSCCCSC---------
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCC--c-ccCCcCCEEECcCCcCCCC---------
Confidence 45667777777664332211111113456677777777643 221111 1 3667777777774421110
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLI 339 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~ 339 (784)
.+. ...+++|++|++++|. ++......+ ..+++|++|++++|........
T Consensus 216 -----------------------~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~---- 265 (768)
T 3rgz_A 216 -----------------------IPF-LGDCSALQHLDISGNK-LSGDFSRAI-STCTELKLLNISSNQFVGPIPP---- 265 (768)
T ss_dssp -----------------------CCB-CTTCCSCCEEECCSSC-CCSCHHHHT-TTCSSCCEEECCSSCCEESCCC----
T ss_pred -----------------------Ccc-cccCCCCCEEECcCCc-CCCcccHHH-hcCCCCCEEECCCCcccCccCc----
Confidence 011 3567888888888875 333323333 4578888888888754322111
Q ss_pred HhCCCCCEEEeeCCCCCHHHHHHh---hccCCccC---cccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCcc
Q 003957 340 RRCVKLQSIIVCDTSFGVYSIRAL---CSEVPYCN---SSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARK 413 (784)
Q Consensus 340 ~~~~~L~~L~Ls~~~i~~~~l~~l---~~~l~~~~---~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~ 413 (784)
..+++|++|++++|.+.......+ +..+..+. +.-...+|..+..+++|++|++++|........ ..+..+++
T Consensus 266 ~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~-~~l~~l~~ 344 (768)
T 3rgz_A 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM-DTLLKMRG 344 (768)
T ss_dssp CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH-HHHTTCTT
T ss_pred cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH-HHHhcCCC
Confidence 156788888888876542111111 11111110 000123455566677777777777653211111 11256777
Q ss_pred ccEEEecCCcCchhhhhhcc-cC-CcCEEEecCCccchhhHHHHHh-cCCCccEEeccCCCccccccccccccccCCCCc
Q 003957 414 LKSLCLSGTQLADKALYNFS-GS-SLEMLDVSDTMISGAALAYMVH-GNSGLKYLNARGCKNLFQQESNGRGIEFSSYPC 490 (784)
Q Consensus 414 L~~L~Ls~~~l~~~~~~~l~-~~-~L~~L~Ls~~~i~~~~l~~~~~-~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~ 490 (784)
|+.|++++|.++...+..+. .+ +|++|++++|.+++.....+.. .+++|++|++++|.. +
T Consensus 345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~---------------- 407 (768)
T 3rgz_A 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF-T---------------- 407 (768)
T ss_dssp CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE-E----------------
T ss_pred CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc-c----------------
Confidence 77777777766644444443 23 7777777777665433322211 156777777776632 1
Q ss_pred hhhHHhhhcCCCccEEEecc-ccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHH
Q 003957 491 ADLFAELGRTRKLEEIVLGW-GFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIII 569 (784)
Q Consensus 491 ~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~ 569 (784)
+.++..+..+++|++|+++. .+.. .....+..+++|+.|++++|. +.......+. .+++|+.|+++.|.+++. ++
T Consensus 408 ~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~-~l~~L~~L~L~~N~l~~~-~p 483 (768)
T 3rgz_A 408 GKIPPTLSNCSELVSLHLSFNYLSG-TIPSSLGSLSKLRDLKLWLNM-LEGEIPQELM-YVKTLETLILDFNDLTGE-IP 483 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSC-CCSCCCGGGG-GCTTCCEEECCSSCCCSC-CC
T ss_pred cccCHHHhcCCCCCEEECcCCcccC-cccHHHhcCCCCCEEECCCCc-ccCcCCHHHc-CCCCceEEEecCCcccCc-CC
Confidence 12334677889999999954 3332 223346778899999999883 3322222333 378899999988887754 34
Q ss_pred HHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHH-
Q 003957 570 NILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLI- 647 (784)
Q Consensus 570 ~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~- 647 (784)
..+.++++|++|++++|. .+..+..+. .+++|++|++++| .++.. +...+..+++|+.|++++|+.....+...
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N--~l~~~-~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNN--SFSGN-IPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSS--CCEEE-CCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred HHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCC--cccCc-CCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 457789999999999993 333333343 4689999999995 45422 22334578899999999987542111000
Q ss_pred -------------------------------------------------------------------HHhcCCCCcEEee
Q 003957 648 -------------------------------------------------------------------ISQGWPGLISLHL 660 (784)
Q Consensus 648 -------------------------------------------------------------------~~~~~~~L~~L~L 660 (784)
....+++|+.|+|
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 0112578999999
Q ss_pred cCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEEEec
Q 003957 661 EECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKIT 739 (784)
Q Consensus 661 ~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is 739 (784)
++|. ++...+..++++++|+.|+|++|.+ . ..+++.++.+++|+.|+|++|... + .+|. +.++++|++|+++
T Consensus 640 s~N~-l~g~ip~~l~~l~~L~~L~Ls~N~l--~-g~ip~~l~~L~~L~~LdLs~N~l~-g--~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 640 SYNM-LSGYIPKEIGSMPYLFILNLGHNDI--S-GSIPDEVGDLRGLNILDLSSNKLD-G--RIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CSSC-CBSCCCGGGGGCTTCCEEECCSSCC--C-SCCCGGGGGCTTCCEEECCSSCCE-E--CCCGGGGGCCCCSEEECC
T ss_pred cCCc-ccccCCHHHhccccCCEEeCcCCcc--C-CCCChHHhCCCCCCEEECCCCccc-C--cCChHHhCCCCCCEEECc
Confidence 9987 6555566778899999999999976 5 577888999999999999998876 3 3577 8999999999999
Q ss_pred CCCC
Q 003957 740 KCKS 743 (784)
Q Consensus 740 ~C~~ 743 (784)
+|+.
T Consensus 713 ~N~l 716 (768)
T 3rgz_A 713 NNNL 716 (768)
T ss_dssp SSEE
T ss_pred CCcc
Confidence 9974
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-30 Score=306.03 Aligned_cols=490 Identities=15% Similarity=0.121 Sum_probs=236.7
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
.+++|++|++++|.-..... ..+..+++|++|++++| .++......+ ..+++|++|+++.+.-..++
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~-------- 137 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSD---KTFAFCTNLTELHLMSN-SIQKIKNNPF-VKQKNLITLDLSHNGLSSTK-------- 137 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCT---TTTTTCTTCSEEECCSS-CCCCCCSCTT-TTCTTCCEEECCSSCCSCCC--------
T ss_pred cccCcCEEECCCCccCccCh---hhhccCCCCCEEECCCC-ccCccChhHc-cccCCCCEEECCCCcccccC--------
Confidence 45667777777653222111 01245667777777763 3332221122 36667777777754211110
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHH-HcCCCCCeEecCCCCccCHHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFIS-KYCVSLGYINIKGCVSVTDVCISNL 338 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~-~~~~~L~~L~L~~c~~l~~~~l~~l 338 (784)
+....++++|++|++++|.. +......+. ..+++|++|++++|.. +... +..
T Consensus 138 ------------------------~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~-~~~ 190 (680)
T 1ziw_A 138 ------------------------LGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSNQI-KEFS-PGC 190 (680)
T ss_dssp ------------------------CCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTTCCC-CCBC-TTG
T ss_pred ------------------------chhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCCCcc-cccC-hhh
Confidence 11134567777777777642 222222221 1356777777777532 1111 112
Q ss_pred HHhCCCCCEEEeeCCCCCHHHHHHhhccCCcc-----C--cccc-cccchhhhcC--CCccEEEecCCCCCCHHHHHHHH
Q 003957 339 IRRCVKLQSIIVCDTSFGVYSIRALCSEVPYC-----N--SSAL-CGKRNFNTLA--SNLQMLHMACCNGVDGMYLLELM 408 (784)
Q Consensus 339 ~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~-----~--~~~~-~~~~~~~~~l--~~L~~L~L~~c~~l~~~~l~~l~ 408 (784)
+..+++|+.|++.++.+.......++..+... . .... ...|..+..+ ++|+.|++++|.... .. +..+
T Consensus 191 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~-~~-~~~~ 268 (680)
T 1ziw_A 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VG-NDSF 268 (680)
T ss_dssp GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE-EC-TTTT
T ss_pred hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc-cC-cccc
Confidence 34456666666666666554444433211000 0 0000 0011122222 225555555543210 00 0111
Q ss_pred HhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchh----hHH----HHHhcCCCccEEeccCCCcccccccc
Q 003957 409 CQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGA----ALA----YMVHGNSGLKYLNARGCKNLFQQESN 479 (784)
Q Consensus 409 ~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~----~l~----~~~~~l~~L~~L~L~~c~~l~~~~~~ 479 (784)
..+++|+.|++++|.++......|. .++|++|+++++..... .+. ..+..+++|++|+++++. ++...
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~-- 345 (680)
T 1ziw_A 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIK-- 345 (680)
T ss_dssp TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCC--
T ss_pred cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCC--
Confidence 3455555555555554444333333 34555555554321110 000 012344555555555442 11111
Q ss_pred ccccccCCCCchhhHHhhhcCCCccEEEecccc---CcccHhhhhh-hcCcccEEEecCCCCCChHHHHHhhccCCCCcE
Q 003957 480 GRGIEFSSYPCADLFAELGRTRKLEEIVLGWGF---SFLSLEVLKP-AIKLLHSITVGLGGSLGEDALRLLPTTCPMLEL 555 (784)
Q Consensus 480 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~---~~~~~~~~~~-~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~ 555 (784)
...+..+++|++|+++.+. ...+...+.. ..++|+.|+++++. +.......+. .+++|+.
T Consensus 346 --------------~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~ 409 (680)
T 1ziw_A 346 --------------SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFS-WLGHLEV 409 (680)
T ss_dssp --------------TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC-CCEECTTTTT-TCTTCCE
T ss_pred --------------hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC-CCeEChhhhh-CCCCCCE
Confidence 1134556677777774321 1111111111 12457777777662 2221111222 3677888
Q ss_pred EEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChH-HHHHHHhcCCCCcEEE
Q 003957 556 VVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNN-DLVILTQNCSELVELS 633 (784)
Q Consensus 556 L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~-~l~~l~~~~~~L~~L~ 633 (784)
|+++.|.+++......+.++++|++|++++|. ....... ...+++|++|+++++ .++.. .....+.++++|+.|+
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~L~~L~l~~n--~l~~~~~~p~~~~~l~~L~~L~ 486 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS-FALVPSLQRLMLRRV--ALKNVDSSPSPFQPLRNLTILD 486 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTT-TTTCTTCCEEECTTS--CCBCTTCSSCTTTTCTTCCEEE
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhh-hhcCcccccchhccc--cccccccCCcccccCCCCCEEE
Confidence 88877666543222345677888888888873 2221222 234577777777774 33321 1222344677777777
Q ss_pred ecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHH--------HHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCC
Q 003957 634 LVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYG--------VTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMP 705 (784)
Q Consensus 634 Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~--------~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~ 705 (784)
+++|.+.. .......++++|+.|++++|. ++... ...+.++++|+.|++++|.+ . ......+.+++
T Consensus 487 Ls~N~l~~--i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l--~-~i~~~~~~~l~ 560 (680)
T 1ziw_A 487 LSNNNIAN--INDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGF--D-EIPVEVFKDLF 560 (680)
T ss_dssp CCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC--C-CCCTTTTTTCT
T ss_pred CCCCCCCc--CChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCC--C-CCCHHHccccc
Confidence 77776543 111223456777777777765 33221 11245677777777777755 3 22233466777
Q ss_pred CCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCC
Q 003957 706 MLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKS 743 (784)
Q Consensus 706 ~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~ 743 (784)
+|+.|++++|... .+|. +.++++|+.|++++|+.
T Consensus 561 ~L~~L~Ls~N~l~----~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 561 ELKIIDLGLNNLN----TLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp TCCEEECCSSCCC----CCCTTTTTTCTTCCEEECTTSCC
T ss_pred CcceeECCCCCCC----cCCHhHhCCCCCCCEEECCCCcC
Confidence 7777777766554 3444 56677777777777653
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-31 Score=313.85 Aligned_cols=466 Identities=18% Similarity=0.129 Sum_probs=281.3
Q ss_pred CcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHH--HHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 182 EAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLH--KLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 182 ~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~--~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
+.|+.++++.+....... ....+++|++|++++ +.+++.... .+ ..+++|++|+|+++. +...
T Consensus 77 ~~L~~l~~~~~~~~~l~~----~~~~l~~L~~L~Ls~-n~l~~~~~~~~~l-~~l~~L~~L~Ls~n~---l~~~------ 141 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVS----GFKCSASLTSLDLSR-NSLSGPVTTLTSL-GSCSGLKFLNVSSNT---LDFP------ 141 (768)
T ss_dssp TTCCEEECTTSCEEECCC----CCCCCTTCCEEECCS-SEEEEEGGGGGGG-GGCTTCCEEECCSSE---EECC------
T ss_pred CcccccCCcCCCcCCCch----hhccCCCCCEEECCC-CcCCCcCCChHHH-hCCCCCCEEECcCCc---cCCc------
Confidence 555666666543222100 124567888888887 444432222 33 378888888888542 1000
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHH--HHHcCCCCCeEecCCCCccCHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEF--ISKYCVSLGYINIKGCVSVTDVCISN 337 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~--l~~~~~~L~~L~L~~c~~l~~~~l~~ 337 (784)
++ .....++++|++|++++|.. +...... ....+++|++|++++|........
T Consensus 142 ----~~------------------~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-- 196 (768)
T 3rgz_A 142 ----GK------------------VSGGLKLNSLEVLDLSANSI-SGANVVGWVLSDGCGELKHLAISGNKISGDVDV-- 196 (768)
T ss_dssp ----SS------------------CCSCCCCTTCSEEECCSSCC-EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--
T ss_pred ----CC------------------HHHhccCCCCCEEECCCCcc-CCcCChhhhhhccCCCCCEEECCCCcccccCCc--
Confidence 00 00124668888888888753 3222222 134578888888888654322211
Q ss_pred HHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEE
Q 003957 338 LIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSL 417 (784)
Q Consensus 338 l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L 417 (784)
.++++|++|++++|.+... .|. +..+++|++|++++|.... . .+..+..+++|+.|
T Consensus 197 --~~l~~L~~L~Ls~n~l~~~-------------------~~~-l~~l~~L~~L~Ls~n~l~~-~-~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 197 --SRCVNLEFLDVSSNNFSTG-------------------IPF-LGDCSALQHLDISGNKLSG-D-FSRAISTCTELKLL 252 (768)
T ss_dssp --TTCTTCCEEECCSSCCCSC-------------------CCB-CTTCCSCCEEECCSSCCCS-C-HHHHTTTCSSCCEE
T ss_pred --ccCCcCCEEECcCCcCCCC-------------------Ccc-cccCCCCCEEECcCCcCCC-c-ccHHHhcCCCCCEE
Confidence 4678888888888876540 223 4778888888888876532 2 22233778888888
Q ss_pred EecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhh
Q 003957 418 CLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAEL 497 (784)
Q Consensus 418 ~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l 497 (784)
++++|.++...... ..++|++|++++|.+++.....+...+++|++|++++|.. +. .+...+
T Consensus 253 ~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l-~~----------------~~p~~~ 314 (768)
T 3rgz_A 253 NISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-YG----------------AVPPFF 314 (768)
T ss_dssp ECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE-EE----------------CCCGGG
T ss_pred ECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC-CC----------------ccchHH
Confidence 88888766433222 4578888888888766443333333458888888877732 21 122356
Q ss_pred hcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHh-hC
Q 003957 498 GRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILE-SL 575 (784)
Q Consensus 498 ~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~-~l 575 (784)
+.+++|++|+++ +.+...-....+..+++|+.|++++|. +.......+....++|+.|+++.+.+++.....+.. .+
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE-EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc-cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 677888888884 344322222235667788888888773 211111122221237888888766665432222111 15
Q ss_pred CCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCC
Q 003957 576 RRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPG 654 (784)
Q Consensus 576 ~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~ 654 (784)
++|++|++++|. .+.....+ ..+++|++|++++| .++.. +...+..+++|+.|++++|....... .....+++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N--~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~ 467 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFN--YLSGT-IPSSLGSLSKLRDLKLWLNMLEGEIP--QELMYVKT 467 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSS--EEESC-CCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTT
T ss_pred CCccEEECCCCccccccCHHH-hcCCCCCEEECcCC--cccCc-ccHHHhcCCCCCEEECCCCcccCcCC--HHHcCCCC
Confidence 678888888883 32222223 35578888888884 34321 11224467788888888887654211 12245788
Q ss_pred CcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCC
Q 003957 655 LISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSL 733 (784)
Q Consensus 655 L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L 733 (784)
|+.|++++|. ++...+..+.++++|+.|++++|.+ . ..++..++.+++|+.|++++|... + .+|. +..+++|
T Consensus 468 L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l--~-~~~p~~~~~l~~L~~L~L~~N~l~-~--~~p~~l~~l~~L 540 (768)
T 3rgz_A 468 LETLILDFND-LTGEIPSGLSNCTNLNWISLSNNRL--T-GEIPKWIGRLENLAILKLSNNSFS-G--NIPAELGDCRSL 540 (768)
T ss_dssp CCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCC--C-SCCCGGGGGCTTCCEEECCSSCCE-E--ECCGGGGGCTTC
T ss_pred ceEEEecCCc-ccCcCCHHHhcCCCCCEEEccCCcc--C-CcCChHHhcCCCCCEEECCCCccc-C--cCCHHHcCCCCC
Confidence 8888888876 5444445566788888888888865 4 456667788888888888887765 2 2466 7888888
Q ss_pred CEEEecCCCC
Q 003957 734 STVKITKCKS 743 (784)
Q Consensus 734 ~~L~is~C~~ 743 (784)
+.|++++|+.
T Consensus 541 ~~L~Ls~N~l 550 (768)
T 3rgz_A 541 IWLDLNTNLF 550 (768)
T ss_dssp CEEECCSSEE
T ss_pred CEEECCCCcc
Confidence 8888888864
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-30 Score=299.95 Aligned_cols=471 Identities=13% Similarity=0.052 Sum_probs=295.4
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
.+++|++|++++|.-.... +..+..+++|++|++++ +.++......+ ..+++|++|+++++.-..++
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~l~-------- 121 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIH---EDTFQSQHRLDTLVLTA-NPLIFMAETAL-SGPKALKHLFFIQTGISSID-------- 121 (606)
T ss_dssp TCTTCSEEECTTCCCCEEC---TTTTTTCTTCCEEECTT-CCCSEECTTTT-SSCTTCCEEECTTSCCSCGG--------
T ss_pred cCccceEEECCCCccceeC---hhhccCccccCeeeCCC-CcccccChhhh-cccccccEeeccccCcccCC--------
Confidence 4678888888887432220 01235678888888888 44543322233 37888888888865322111
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLI 339 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~ 339 (784)
+.....+++|++|++++|.. +......+.. +++|++|+++++.. +... +..+
T Consensus 122 ------------------------~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~-l~~L~~L~L~~n~l-~~~~-~~~~ 173 (606)
T 3t6q_A 122 ------------------------FIPLHNQKTLESLYLGSNHI-SSIKLPKGFP-TEKLKVLDFQNNAI-HYLS-KEDM 173 (606)
T ss_dssp ------------------------GSCCTTCTTCCEEECCSSCC-CCCCCCTTCC-CTTCCEEECCSSCC-CEEC-HHHH
T ss_pred ------------------------cchhccCCcccEEECCCCcc-cccCcccccC-CcccCEEEcccCcc-cccC-hhhh
Confidence 01135678888888888753 2211122222 77888888888643 2211 2345
Q ss_pred HhCCCCC--EEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHH----------
Q 003957 340 RRCVKLQ--SIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLEL---------- 407 (784)
Q Consensus 340 ~~~~~L~--~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l---------- 407 (784)
..+++|+ .|++++|.+.. .+.......+|+.|++++|..+. ..+..+
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~--------------------~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~l~~l~~ 232 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAG--------------------IEPGAFDSAVFQSLNFGGTQNLL-VIFKGLKNSTIQSLWL 232 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCE--------------------ECTTTTTTCEEEEEECTTCSCHH-HHHHHTTTCEEEEEEC
T ss_pred hhhcccceeEEecCCCccCc--------------------cChhHhhhccccccccCCchhHH-HHhhhccccchhheec
Confidence 6778888 78888887765 11111234567778877775321 111110
Q ss_pred ---------------HHhC--ccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccC
Q 003957 408 ---------------MCQA--RKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARG 469 (784)
Q Consensus 408 ---------------~~~~--~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~ 469 (784)
...+ .+|+.|++++|.+++.....|. .++|++|++++|.++.. ...+.++++|++|++++
T Consensus 233 ~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l--p~~l~~l~~L~~L~l~~ 310 (606)
T 3t6q_A 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL--PSGLVGLSTLKKLVLSA 310 (606)
T ss_dssp CCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCC--CSSCCSCTTCCEEECTT
T ss_pred hhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCC--ChhhcccccCCEEECcc
Confidence 0011 1677788888777766655555 57888888888876532 12235678888888877
Q ss_pred CCccccccccccccccCCCCchhhHHhhhcCCCccEEEecc-ccCcccHhhhhhhcCcccEEEecCCCCCChHH--HHHh
Q 003957 470 CKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGW-GFSFLSLEVLKPAIKLLHSITVGLGGSLGEDA--LRLL 546 (784)
Q Consensus 470 c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--l~~l 546 (784)
|. ++.. ....+..+++|++|+++. ..........+..+++|+.|+++++. +.... ...+
T Consensus 311 n~-l~~~----------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 372 (606)
T 3t6q_A 311 NK-FENL----------------CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQL 372 (606)
T ss_dssp CC-CSBG----------------GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTT
T ss_pred CC-cCcC----------------chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhc
Confidence 63 2221 122566678888888843 33322222345677889999998873 22211 1122
Q ss_pred hccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhc
Q 003957 547 PTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQN 625 (784)
Q Consensus 547 ~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~ 625 (784)
..+++|++|+++.+.+++. ....+..+++|++|++++|. ...........+++|++|++++| .++... ...+..
T Consensus 373 -~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~-~~~~~~ 447 (606)
T 3t6q_A 373 -RNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS--LLDISS-EQLFDG 447 (606)
T ss_dssp -TTCTTCCEEECCSCSCEEE-CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC--CCBTTC-TTTTTT
T ss_pred -ccCCCCCEEECCCCcCCcC-CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC--ccCCcC-HHHHhC
Confidence 2378899999987766543 23346678899999998883 22222333445689999999985 454322 223456
Q ss_pred CCCCcEEEecCCCCCChHH-HHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcC
Q 003957 626 CSELVELSLVGCTLLSSDS-QLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKM 704 (784)
Q Consensus 626 ~~~L~~L~Ls~c~~~~~~~-~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l 704 (784)
+++|++|++++|....... ......++++|+.|++++|. ++...+..+.++++|+.|++++|.+ . ...++.+..+
T Consensus 448 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l--~-~~~~~~l~~l 523 (606)
T 3t6q_A 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHNRL--T-SSSIEALSHL 523 (606)
T ss_dssp CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCC--C-GGGGGGGTTC
T ss_pred CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChhhhccccCCCEEECCCCcc--C-cCChhHhCcc
Confidence 8899999999987643111 01123568899999999986 6655556677899999999999965 5 5667778889
Q ss_pred CCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCcC
Q 003957 705 PMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~ 745 (784)
++| .|++++|... +. .|. +..+++|+.|++++|+-..
T Consensus 524 ~~L-~L~L~~N~l~-~~--~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 524 KGI-YLNLASNHIS-II--LPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CSC-EEECCSSCCC-CC--CGGGHHHHHTSSEEECTTCCEEC
T ss_pred ccc-EEECcCCccc-cc--CHhhcccCCCCCEEeCCCCCccc
Confidence 999 9999988776 21 244 7788899999999988543
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-30 Score=300.33 Aligned_cols=470 Identities=15% Similarity=0.068 Sum_probs=314.2
Q ss_pred eCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeecC
Q 003957 181 FEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSSS 260 (784)
Q Consensus 181 ~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~~ 260 (784)
-+++++|+++++.-.... ...+..+++|++|++++ +.++......+ ..+++|++|+|+++.-..+.
T Consensus 32 ~~~l~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~--------- 97 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQ---NTTFSRLINLTFLDLTR-CQIYWIHEDTF-QSQHRLDTLVLTANPLIFMA--------- 97 (606)
T ss_dssp CTTCCEEECTTCCCSEEC---TTTSTTCTTCSEEECTT-CCCCEECTTTT-TTCTTCCEEECTTCCCSEEC---------
T ss_pred CCcCcEEEccCCccCcCC---hhHhccCccceEEECCC-CccceeChhhc-cCccccCeeeCCCCcccccC---------
Confidence 357899999987543221 11236789999999999 45554333333 38999999999965322111
Q ss_pred CccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHH
Q 003957 261 SALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIR 340 (784)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~ 340 (784)
+.....+++|++|++++|.. +......+ ..+++|++|++++|.. +...++.+.
T Consensus 98 -----------------------~~~~~~l~~L~~L~L~~n~i-~~l~~~~~-~~l~~L~~L~L~~n~l-~~~~~~~~~- 150 (606)
T 3t6q_A 98 -----------------------ETALSGPKALKHLFFIQTGI-SSIDFIPL-HNQKTLESLYLGSNHI-SSIKLPKGF- 150 (606)
T ss_dssp -----------------------TTTTSSCTTCCEEECTTSCC-SCGGGSCC-TTCTTCCEEECCSSCC-CCCCCCTTC-
T ss_pred -----------------------hhhhcccccccEeeccccCc-ccCCcchh-ccCCcccEEECCCCcc-cccCccccc-
Confidence 12246779999999999853 33211122 4588999999998643 222222222
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCcc--EEEecCCCCCCHHHHHHHHHhCccccEEE
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQ--MLHMACCNGVDGMYLLELMCQARKLKSLC 418 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~--~L~L~~c~~l~~~~l~~l~~~~~~L~~L~ 418 (784)
.+++|+.|++++|.+.... +..+..+++|+ .|++++|..... .. . .....+|+.|+
T Consensus 151 ~l~~L~~L~L~~n~l~~~~-------------------~~~~~~l~~L~~l~L~l~~n~l~~~-~~-~-~~~~~~L~~L~ 208 (606)
T 3t6q_A 151 PTEKLKVLDFQNNAIHYLS-------------------KEDMSSLQQATNLSLNLNGNDIAGI-EP-G-AFDSAVFQSLN 208 (606)
T ss_dssp CCTTCCEEECCSSCCCEEC-------------------HHHHHTTTTCCSEEEECTTCCCCEE-CT-T-TTTTCEEEEEE
T ss_pred CCcccCEEEcccCcccccC-------------------hhhhhhhcccceeEEecCCCccCcc-Ch-h-Hhhhccccccc
Confidence 3789999999999887522 22346788888 888988865221 11 1 12446788888
Q ss_pred ecCCcCc-----------------------------hhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccC
Q 003957 419 LSGTQLA-----------------------------DKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARG 469 (784)
Q Consensus 419 Ls~~~l~-----------------------------~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~ 469 (784)
++++... ...+..+...+|+.|++++|.++...... +..+++|++|++++
T Consensus 209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~ 287 (606)
T 3t6q_A 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT-FHCFSGLQELDLTA 287 (606)
T ss_dssp CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT-TTTCTTCSEEECTT
T ss_pred cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH-hccccCCCEEeccC
Confidence 8775311 11112222237899999999876654332 36789999999988
Q ss_pred CCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhc
Q 003957 470 CKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPT 548 (784)
Q Consensus 470 c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~ 548 (784)
+. ++. ++..+..+++|++|+++ +.+..... ..+..+++|+.|+++++..........+.
T Consensus 288 n~-l~~-----------------lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~- 347 (606)
T 3t6q_A 288 TH-LSE-----------------LPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLE- 347 (606)
T ss_dssp SC-CSC-----------------CCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTT-
T ss_pred Cc-cCC-----------------CChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCCcccccchhhhh-
Confidence 73 332 12246678899999995 44544333 34677899999999998432111111223
Q ss_pred cCCCCcEEEeeeeccChHHH-HHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCC
Q 003957 549 TCPMLELVVLYFQVMSDSII-INILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCS 627 (784)
Q Consensus 549 ~~~~L~~L~L~~~~i~~~~l-~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~ 627 (784)
.+++|++|+++.+.++.... ...+.++++|++|++++|............+++|++|+++++ .++.......+.+++
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT--RLKVKDAQSPFQNLH 425 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC--CEECCTTCCTTTTCT
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC--cCCCcccchhhhCcc
Confidence 47899999998888776421 234678899999999999422222223345699999999995 454333333356789
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHH---HHhhCCCCCCEEEcccCCCCCChhHHHHHHhcC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGV---TSLFNCIALEDLLLRHNGPGIPRDFILDAASKM 704 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~---~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l 704 (784)
+|++|++++|...... .....++++|+.|++++|. ++...+ ..+..+++|+.|++++|.+ . ...+..+..+
T Consensus 426 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l--~-~~~~~~~~~l 499 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISS--EQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCDL--S-SIDQHAFTSL 499 (606)
T ss_dssp TCCEEECTTCCCBTTC--TTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSCC--C-EECTTTTTTC
T ss_pred cCCEEECCCCccCCcC--HHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCcc--C-ccChhhhccc
Confidence 9999999999875421 2223568999999999987 543222 3456899999999999976 4 4556778899
Q ss_pred CCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCcCc
Q 003957 705 PMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~~ 746 (784)
++|+.|++++|... + ..|. +.++++| .|++++|.....
T Consensus 500 ~~L~~L~Ls~N~l~-~--~~~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 500 KMMNHVDLSHNRLT-S--SSIEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp TTCCEEECCSSCCC-G--GGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred cCCCEEECCCCccC-c--CChhHhCccccc-EEECcCCccccc
Confidence 99999999998766 2 2344 8999999 999999986544
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=258.39 Aligned_cols=164 Identities=16% Similarity=0.303 Sum_probs=86.5
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHcCC----CCCeEecCCCCccCHH---HHHHHHHhCCCCCEEEeeCCCCCHHHHHH
Q 003957 290 PSKITKLTLEGRSDMCDADLEFISKYCV----SLGYINIKGCVSVTDV---CISNLIRRCVKLQSIIVCDTSFGVYSIRA 362 (784)
Q Consensus 290 l~~L~~L~Ls~~~~l~~~~l~~l~~~~~----~L~~L~L~~c~~l~~~---~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~ 362 (784)
+++|++|++++|. +++.+...+...++ +|++|++++|. +++. .+...+..+++|++|++++|.++..++..
T Consensus 55 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 132 (461)
T 1z7x_W 55 NPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 132 (461)
T ss_dssp CTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred CCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence 3556666666553 45555555555555 56666666653 3332 23334445666666666666666655554
Q ss_pred hhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHH---HHHHHHhCccccEEEecCCcCchhhhhhcc------
Q 003957 363 LCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMY---LLELMCQARKLKSLCLSGTQLADKALYNFS------ 433 (784)
Q Consensus 363 l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~---l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~------ 433 (784)
++.. +....++|++|++++|.. ++.. +......+++|+.|++++|.+++.+...+.
T Consensus 133 l~~~--------------l~~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 197 (461)
T 1z7x_W 133 LCEG--------------LLDPQCRLEKLQLEYCSL-SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197 (461)
T ss_dssp HHHH--------------HTSTTCCCCEEECTTSCC-BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHS
T ss_pred HHHH--------------HhcCCCcceEEECCCCCC-CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcC
Confidence 4211 112244566666666643 2222 222334566666666666666555544432
Q ss_pred cCCcCEEEecCCccchhh---HHHHHhcCCCccEEeccCC
Q 003957 434 GSSLEMLDVSDTMISGAA---LAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 434 ~~~L~~L~Ls~~~i~~~~---l~~~~~~l~~L~~L~L~~c 470 (784)
.++|++|++++|.++..+ +...+..+++|++|++++|
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 236666666666555543 2233345566666666555
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=257.13 Aligned_cols=365 Identities=19% Similarity=0.211 Sum_probs=211.4
Q ss_pred CCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHH---HHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccC
Q 003957 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDV---CISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEV 367 (784)
Q Consensus 291 ~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~---~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l 367 (784)
++|++|+++++. +++.....+...+++|++|++++|. +++. .+...+..+++|++|++++|.+++.++..++..+
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 678999998774 7777777766778899999999875 5554 3445566789999999999998887776653222
Q ss_pred CccCcccccccchhhhcCCCccEEEecCCCCCCHH---HHHHHHHhCccccEEEecCCcCchhhhhhcc------cCCcC
Q 003957 368 PYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGM---YLLELMCQARKLKSLCLSGTQLADKALYNFS------GSSLE 438 (784)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~---~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~------~~~L~ 438 (784)
. ...++|++|++++|.. ++. .+......+++|+.|++++|.+++.+...+. .++|+
T Consensus 81 ~--------------~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 145 (461)
T 1z7x_W 81 Q--------------TPSCKIQKLSLQNCCL-TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145 (461)
T ss_dssp C--------------STTCCCCEEECTTSCC-BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred h--------------hCCCceeEEEccCCCC-CHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcce
Confidence 0 1122699999998864 432 3344446788999999999888877665544 24799
Q ss_pred EEEecCCccchhhH---HHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhh-cCCCccEEEec-cccC
Q 003957 439 MLDVSDTMISGAAL---AYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELG-RTRKLEEIVLG-WGFS 513 (784)
Q Consensus 439 ~L~Ls~~~i~~~~l---~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~L~-~~~~ 513 (784)
+|++++|.+++.+. ...+..+++|++|+++++. +++.+.. .+...+. ..++|++|+++ +.++
T Consensus 146 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~------------~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVR------------VLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHH------------HHHHHHHHSCCCCCEEECTTSCCB
T ss_pred EEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHH------------HHHHHHhcCCCCceEEEccCCCCc
Confidence 99999988877553 3445667899999988874 4443321 2222332 24567777773 3333
Q ss_pred ccc---HhhhhhhcCcccEEEecCCCCCChHHHHHhhc----cCCCCcEEEeeeeccChHH---HHHHHhhCCCCcEEEe
Q 003957 514 FLS---LEVLKPAIKLLHSITVGLGGSLGEDALRLLPT----TCPMLELVVLYFQVMSDSI---IINILESLRRLQVLAI 583 (784)
Q Consensus 514 ~~~---~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~----~~~~L~~L~L~~~~i~~~~---l~~~~~~l~~L~~L~L 583 (784)
... ....+..+++|++|+++++ .+++.++..++. .+++|++|+++.+.+++.+ +...+..+++|++|++
T Consensus 213 ~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 291 (461)
T 1z7x_W 213 SDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291 (461)
T ss_dssp TTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEEC
Confidence 322 2223334556666666665 444444433322 2456666666555565554 2333444556666666
Q ss_pred ccc-CChhHHHHh----hcCCCCccEEEccCCCCCCChHH---HHHHHhcCCCCcEEEecCCCCCChHHHHHHHh----c
Q 003957 584 CHC-LGDLSISSF----KLPLPNLRKLKLERVTPWMTNND---LVILTQNCSELVELSLVGCTLLSSDSQLIISQ----G 651 (784)
Q Consensus 584 s~c-~~~~~~~~l----~~~~~~L~~L~L~~c~~~l~~~~---l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~----~ 651 (784)
++| +++.....+ ....++|++|++++| .+++.+ +......+++|++|++++|.+.+ .....+.. .
T Consensus 292 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~ 368 (461)
T 1z7x_W 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSC--SFTAACCSHFSSVLAQNRFLLELQISNNRLED-AGVRELCQGLGQP 368 (461)
T ss_dssp TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS--CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH-HHHHHHHHHHTST
T ss_pred CCCCCchHHHHHHHHHhccCCccceeeEcCCC--CCchHHHHHHHHHHhhCCCccEEEccCCcccc-ccHHHHHHHHcCC
Confidence 665 222222222 122245666666664 344443 22333345566666666654322 22222221 1
Q ss_pred CCCCcEEeecCCCCCCHHHHHH----hhCCCCCCEEEcccCCC
Q 003957 652 WPGLISLHLEECGDITAYGVTS----LFNCIALEDLLLRHNGP 690 (784)
Q Consensus 652 ~~~L~~L~L~~c~~i~~~~~~~----l~~~~~L~~L~L~~n~~ 690 (784)
.++|+.|++++|. +++.++.. +..+++|++|++++|.+
T Consensus 369 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 369 GSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp TCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred CCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 3456666665554 55433222 23455566666665543
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-28 Score=287.55 Aligned_cols=486 Identities=16% Similarity=0.101 Sum_probs=284.0
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
.+++|++|+++++.-.... ......+++|++|++++ +.++......+ ..+++|++|+|+.+.-..++.
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~-n~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~------- 114 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLE---PELCQKLPMLKVLNLQH-NELSQLSDKTF-AFCTNLTELHLMSNSIQKIKN------- 114 (680)
T ss_dssp GGTTCSEEECCSSCCCCCC---TTHHHHCTTCCEEECCS-SCCCCCCTTTT-TTCTTCSEEECCSSCCCCCCS-------
T ss_pred CCCcCcEEECCCCccCccC---HHHHhcccCcCEEECCC-CccCccChhhh-ccCCCCCEEECCCCccCccCh-------
Confidence 4677888888876432221 11235678888888887 44443221123 377888888888543222211
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHH-
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNL- 338 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l- 338 (784)
.....+++|++|++++|.. +......+ ..+++|++|++++|.. +......+
T Consensus 115 -------------------------~~~~~l~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L~~L~L~~n~l-~~~~~~~~~ 166 (680)
T 1ziw_A 115 -------------------------NPFVKQKNLITLDLSHNGL-SSTKLGTQ-VQLENLQELLLSNNKI-QALKSEELD 166 (680)
T ss_dssp -------------------------CTTTTCTTCCEEECCSSCC-SCCCCCSS-SCCTTCCEEECCSSCC-CCBCHHHHG
T ss_pred -------------------------hHccccCCCCEEECCCCcc-cccCchhh-cccccCCEEEccCCcc-cccCHHHhh
Confidence 1245678999999998853 22111112 3578899999988643 22111122
Q ss_pred HHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHH--HhCccccE
Q 003957 339 IRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELM--CQARKLKS 416 (784)
Q Consensus 339 ~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~--~~~~~L~~ 416 (784)
...+++|+.|++++|.+... .|..+..+++|+.|++.++.. .......+. ...++|+.
T Consensus 167 ~~~~~~L~~L~L~~n~l~~~-------------------~~~~~~~l~~L~~L~l~~~~l-~~~~~~~~~~~l~~~~L~~ 226 (680)
T 1ziw_A 167 IFANSSLKKLELSSNQIKEF-------------------SPGCFHAIGRLFGLFLNNVQL-GPSLTEKLCLELANTSIRN 226 (680)
T ss_dssp GGTTCEESEEECTTCCCCCB-------------------CTTGGGGSSEECEEECTTCCC-HHHHHHHHHHHHTTSCCCE
T ss_pred ccccccccEEECCCCccccc-------------------Chhhhhhhhhhhhhhcccccc-ChhhHHHHHHHhhhccccE
Confidence 12468899999998877542 122334556666666665543 222221111 13356666
Q ss_pred EEecCCcCchhhhhhcc---cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCc---
Q 003957 417 LCLSGTQLADKALYNFS---GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPC--- 490 (784)
Q Consensus 417 L~Ls~~~l~~~~~~~l~---~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~--- 490 (784)
|++++|.+++.....|. .++|++|++++|.++...... +..+++|++|+++++. +........ ..++.+..
T Consensus 227 L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L 303 (680)
T 1ziw_A 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-FAWLPQLEYFFLEYNN-IQHLFSHSL-HGLFNVRYLNL 303 (680)
T ss_dssp EECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSCC-BSEECTTTT-TTCTTCCEEEC
T ss_pred EEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc-ccCcccccEeeCCCCc-cCccChhhh-cCCCCccEEec
Confidence 66666655544443333 234666666666554332222 2455666666665542 111100000 00000000
Q ss_pred -----------hhhH----HhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCC----CChHHHHHhhccC
Q 003957 491 -----------ADLF----AELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGS----LGEDALRLLPTTC 550 (784)
Q Consensus 491 -----------~~~~----~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~----l~~~~l~~l~~~~ 550 (784)
..+. ..+..+++|++|+++ +.+.... ...+..+++|+.|+++++.. +....+..+ ..
T Consensus 304 ~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~--~~ 380 (680)
T 1ziw_A 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK-SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL--AH 380 (680)
T ss_dssp TTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC-TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG--TT
T ss_pred cchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC-hhHhccccCCcEEECCCCchhhhhcchhhhccc--cc
Confidence 0000 145567788888884 4444332 23456678888888887631 222222111 12
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCC
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSEL 629 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L 629 (784)
++|+.|+++.+.++... +..+.++++|+.|++++|. .+.........+++|++|++++| .++.... ..+..+++|
T Consensus 381 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~-~~~~~~~~L 456 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN--KYLQLTR-NSFALVPSL 456 (680)
T ss_dssp SCCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC--SEEECCT-TTTTTCTTC
T ss_pred CcCceEECCCCCCCeEC-hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC--CcceeCh-hhhhcCccc
Confidence 57888888777776542 2346678899999999883 22222233446689999999995 4432211 123468899
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHH---------HH
Q 003957 630 VELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFIL---------DA 700 (784)
Q Consensus 630 ~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~---------~~ 700 (784)
+.|++++|.............++++|+.|++++|. ++......+.++++|++|++++|.+ ..+. ..
T Consensus 457 ~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~~~~~~~ 531 (680)
T 1ziw_A 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNL----ARLWKHANPGGPIYF 531 (680)
T ss_dssp CEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC----GGGGSTTSTTSCCCT
T ss_pred ccchhccccccccccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCc----cccchhhccCCcchh
Confidence 99999998764321112223568999999999987 6655455567899999999999976 3321 12
Q ss_pred HhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCc
Q 003957 701 ASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 701 l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~ 744 (784)
+.++++|+.|++++|... .+|. +.++++|+.|++++|...
T Consensus 532 ~~~l~~L~~L~L~~N~l~----~i~~~~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 532 LKGLSHLHILNLESNGFD----EIPVEVFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp TTTCTTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred hcCCCCCCEEECCCCCCC----CCCHHHcccccCcceeECCCCCCC
Confidence 678899999999998766 4565 899999999999999754
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-28 Score=282.77 Aligned_cols=463 Identities=13% Similarity=0.036 Sum_probs=261.8
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
.+++|++|++++|.-.... ...+..+++|++|++++ +.++......+ ..+++|++|+|+++.-..++.
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~---~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~------- 121 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIE---DKAWHGLHHLSNLILTG-NPIQSFSPGSF-SGLTSLENLVAVETKLASLES------- 121 (606)
T ss_dssp TCTTCCEEECTTCCCCEEC---TTTTTTCTTCCEEECTT-CCCCCCCTTSS-TTCTTCCEEECTTSCCCCSSS-------
T ss_pred CCccCcEEeCCCCcccccC---HHHhhchhhcCEeECCC-CcccccChhhc-CCcccCCEEEccCCccccccc-------
Confidence 3566667777665322110 01124566677777766 33443222222 366667777776443222211
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCcc--CHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSV--TDVCISN 337 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l--~~~~l~~ 337 (784)
....++++|++|++++|.. +...++.....+++|++|++++|... ....+..
T Consensus 122 -------------------------~~~~~l~~L~~L~L~~n~l-~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 122 -------------------------FPIGQLITLKKLNVAHNFI-HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp -------------------------SCCTTCTTCCEEECCSSCC-CCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred -------------------------cccCCCCCCCEEeCCCCcc-cceechHhHhhcCCCCEEEccCCcceecChhhhhh
Confidence 1134566777777776642 21111222234667777777665321 1111111
Q ss_pred HHHhCCC-CCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccE
Q 003957 338 LIRRCVK-LQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKS 416 (784)
Q Consensus 338 l~~~~~~-L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~ 416 (784)
+ .+++. +.+|++++|.+.. ++.......+|+.|++++|.. +....+.....++.|+.
T Consensus 176 l-~~L~~~l~~L~l~~n~l~~--------------------~~~~~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~ 233 (606)
T 3vq2_A 176 L-RENPQVNLSLDMSLNPIDF--------------------IQDQAFQGIKLHELTLRGNFN-SSNIMKTCLQNLAGLHV 233 (606)
T ss_dssp H-HHCTTCCCEEECTTCCCCE--------------------ECTTTTTTCEEEEEEEESCCS-CHHHHHHHHHTTTTCEE
T ss_pred h-hccccccceeeccCCCcce--------------------eCcccccCceeeeeeccCCcc-chhHHHHHhcccccccc
Confidence 1 12222 4467777666553 222223344899999998765 33445555578888887
Q ss_pred EEecCC---------------------------------cCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCc
Q 003957 417 LCLSGT---------------------------------QLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGL 462 (784)
Q Consensus 417 L~Ls~~---------------------------------~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L 462 (784)
+.+... .+.+.... +. .++|+.|+++++.+.... .+..+++|
T Consensus 234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L 309 (606)
T 3vq2_A 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE---DVPKHFKW 309 (606)
T ss_dssp EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC---CCCTTCCC
T ss_pred ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh---hccccccC
Confidence 776432 22222222 22 356777777776554432 23456677
Q ss_pred cEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHH
Q 003957 463 KYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDA 542 (784)
Q Consensus 463 ~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 542 (784)
++|++.+|.. .... .+ .+++|++|+++.+...... .+..+++|+.|+++++. ++...
T Consensus 310 ~~L~l~~n~l-~~lp------------------~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~~~ 366 (606)
T 3vq2_A 310 QSLSIIRCQL-KQFP------------------TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA-LSFSG 366 (606)
T ss_dssp SEEEEESCCC-SSCC------------------CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC-EEEEE
T ss_pred CEEEcccccC-cccc------------------cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCc-cCCCc
Confidence 7777766633 2111 22 5677888888433111111 23456778888888773 22110
Q ss_pred --HHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHH
Q 003957 543 --LRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDL 619 (784)
Q Consensus 543 --l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l 619 (784)
...+ ..+++|++|+++.+.++.. +..+.++++|+.|++++|. ...........+++|++|++++| .++...
T Consensus 367 ~~~~~~-~~~~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~- 440 (606)
T 3vq2_A 367 CCSYSD-LGTNSLRHLDLSFNGAIIM--SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT--NTKIDF- 440 (606)
T ss_dssp ECCHHH-HCCSCCCEEECCSCSEEEE--CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS--CCEECC-
T ss_pred chhhhh-ccCCcccEeECCCCccccc--hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC--CCCccc-
Confidence 1112 2367788888876665542 2345667888888888872 22222123345688888888885 344321
Q ss_pred HHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHH
Q 003957 620 VILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILD 699 (784)
Q Consensus 620 ~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~ 699 (784)
...+.++++|++|++++|...... ......++++|+.|++++|. ++...+..+.++++|+.|++++|.+ . ...+.
T Consensus 441 ~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l--~-~~~~~ 515 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGNSFKDNT-LSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHNNL--L-FLDSS 515 (606)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCC--S-CEEGG
T ss_pred hhhhcCCCCCCEEECCCCcCCCcc-hHHhhccCCCCCEEECCCCc-CCccChhhhcccccCCEEECCCCcC--C-CcCHH
Confidence 123456778888888888654311 11122457888888888876 6555555667788888888888865 4 44466
Q ss_pred HHhcCCCCceeccccccccCCCCCccc-ccCCC-CCCEEEecCCCCc
Q 003957 700 AASKMPMLRLVSLDLCDASDGNFEIPD-YADRY-SLSTVKITKCKSK 744 (784)
Q Consensus 700 ~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~-~L~~L~is~C~~~ 744 (784)
.+..+++|+.|++++|+.. .+|. +..++ +|++|++++|+-.
T Consensus 516 ~~~~l~~L~~L~l~~N~l~----~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 516 HYNQLYSLSTLDCSFNRIE----TSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp GTTTCTTCCEEECTTSCCC----CEESCGGGSCTTCCEEECCSCCCC
T ss_pred HccCCCcCCEEECCCCcCc----ccCHhHhhhcccCcEEEccCCCcc
Confidence 7788888888888888755 4676 66765 5888888887754
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-27 Score=271.99 Aligned_cols=476 Identities=13% Similarity=0.092 Sum_probs=319.2
Q ss_pred cCeEEeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCcee
Q 003957 176 LPIFSFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVS 255 (784)
Q Consensus 176 l~~~~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~ 255 (784)
+|.--+++|++|+++++.-..... .....+++|++|++++ +.++......+. .+++|++|+|+++.-..++.
T Consensus 20 ip~~~~~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~--- 91 (549)
T 2z81_A 20 IPSGLTAAMKSLDLSFNKITYIGH---GDLRACANLQVLILKS-SRINTIEGDAFY-SLGSLEHLDLSDNHLSSLSS--- 91 (549)
T ss_dssp CCSCCCTTCCEEECCSSCCCEECS---STTSSCTTCCEEECTT-SCCCEECTTTTT-TCTTCCEEECTTSCCCSCCH---
T ss_pred ccccCCCCccEEECcCCccCccCh---hhhhcCCcccEEECCC-CCcCccChhhcc-ccccCCEEECCCCccCccCH---
Confidence 444345789999999985322100 1136789999999999 566543333343 88999999999654322211
Q ss_pred eeecCCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHH
Q 003957 256 VVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCI 335 (784)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l 335 (784)
.....+++|++|++++|.. +..........+++|++|++++|..++...
T Consensus 92 -----------------------------~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~- 140 (549)
T 2z81_A 92 -----------------------------SWFGPLSSLKYLNLMGNPY-QTLGVTSLFPNLTNLQTLRIGNVETFSEIR- 140 (549)
T ss_dssp -----------------------------HHHTTCTTCCEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEEC-
T ss_pred -----------------------------HHhccCCCCcEEECCCCcc-cccchhhhhhccCCccEEECCCCccccccC-
Confidence 0125679999999999853 321111223458899999999876443321
Q ss_pred HHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCcccc
Q 003957 336 SNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLK 415 (784)
Q Consensus 336 ~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~ 415 (784)
...+.++++|+.|++++|.+... .|..+..+++|++|+++++..-. ....+...+++|+
T Consensus 141 ~~~~~~l~~L~~L~L~~n~l~~~-------------------~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~ 199 (549)
T 2z81_A 141 RIDFAGLTSLNELEIKALSLRNY-------------------QSQSLKSIRDIHHLTLHLSESAF--LLEIFADILSSVR 199 (549)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEE-------------------CTTTTTTCSEEEEEEEECSBSTT--HHHHHHHSTTTBS
T ss_pred HhhhhcccccCeeeccCCccccc-------------------ChhhhhccccCceEecccCcccc--cchhhHhhccccc
Confidence 12245789999999999987651 33445778999999999887532 2222346799999
Q ss_pred EEEecCCcCchhhhhh--cc--cCCcCEEEecCCccchhhHHHHH---hcCCCccEEeccCCCccccccccccccccCCC
Q 003957 416 SLCLSGTQLADKALYN--FS--GSSLEMLDVSDTMISGAALAYMV---HGNSGLKYLNARGCKNLFQQESNGRGIEFSSY 488 (784)
Q Consensus 416 ~L~Ls~~~l~~~~~~~--l~--~~~L~~L~Ls~~~i~~~~l~~~~---~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~ 488 (784)
.|++++|.++...... +. .++|+.|+++++.+++.....+. ..+++|+.+++.+|..-....+.
T Consensus 200 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~--------- 270 (549)
T 2z81_A 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN--------- 270 (549)
T ss_dssp EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC---------
T ss_pred EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc---------
Confidence 9999999887653221 11 57999999999988876665543 56789999999988432111110
Q ss_pred CchhhHHhhhcCCCccEEEec-cccCcc----cHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeecc
Q 003957 489 PCADLFAELGRTRKLEEIVLG-WGFSFL----SLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVM 563 (784)
Q Consensus 489 ~~~~~~~~l~~l~~L~~L~L~-~~~~~~----~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i 563 (784)
......+..+.+|+.+.+. ...... ..........+|+.|+++++. +.... ..+...+++|+.|+++.|.+
T Consensus 271 --~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip-~~~~~~l~~L~~L~Ls~N~l 346 (549)
T 2z81_A 271 --PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVP-CSFSQHLKSLEFLDLSENLM 346 (549)
T ss_dssp --CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCC-HHHHHHCTTCCEEECCSSCC
T ss_pred --ccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCC-HHHHhcCccccEEEccCCcc
Confidence 0011234556788888883 322221 112223446789999999873 33211 12223478899999999999
Q ss_pred ChHHHHH--HHhhCCCCcEEEeccc-CChhHH-HHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCC
Q 003957 564 SDSIIIN--ILESLRRLQVLAICHC-LGDLSI-SSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTL 639 (784)
Q Consensus 564 ~~~~l~~--~~~~l~~L~~L~Ls~c-~~~~~~-~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~ 639 (784)
++..... .+..+++|+.|++++| +..... ......+++|++|++++| .++. +...+..+++|++|++++|.+
T Consensus 347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~--lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN--TFHP--MPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC--CCCC--CCSCCCCCTTCCEEECTTSCC
T ss_pred ccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC--CCcc--CChhhcccccccEEECCCCCc
Confidence 8764432 2567899999999999 333322 234556799999999995 5652 332345678999999999986
Q ss_pred CChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccC
Q 003957 640 LSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASD 719 (784)
Q Consensus 640 ~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~ 719 (784)
..-. ..-.++|+.|++++|. ++.. ..++++|++|++++|.+ ..++. ...+++|+.|++++|...
T Consensus 423 ~~l~-----~~~~~~L~~L~Ls~N~-l~~~----~~~l~~L~~L~Ls~N~l----~~ip~-~~~l~~L~~L~Ls~N~l~- 486 (549)
T 2z81_A 423 RVVK-----TCIPQTLEVLDVSNNN-LDSF----SLFLPRLQELYISRNKL----KTLPD-ASLFPVLLVMKISRNQLK- 486 (549)
T ss_dssp SCCC-----TTSCTTCSEEECCSSC-CSCC----CCCCTTCCEEECCSSCC----SSCCC-GGGCTTCCEEECCSSCCC-
T ss_pred cccc-----chhcCCceEEECCCCC-hhhh----cccCChhcEEECCCCcc----CcCCC-cccCccCCEEecCCCccC-
Confidence 5310 0113689999999987 5432 24799999999999987 44444 457899999999998766
Q ss_pred CCCCccc-ccCCCCCCEEEecCCCCcCc
Q 003957 720 GNFEIPD-YADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 720 ~~~~l~~-~~~~~~L~~L~is~C~~~~~ 746 (784)
+. .|. +..+++|+.|++++|+-...
T Consensus 487 ~~--~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 487 SV--PDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CC--CTTGGGGCTTCCEEECCSSCBCCC
T ss_pred Cc--CHHHHhcCcccCEEEecCCCccCC
Confidence 22 234 88999999999999986443
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-28 Score=281.32 Aligned_cols=228 Identities=14% Similarity=0.042 Sum_probs=150.4
Q ss_pred hhcCCCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHH-HHHHHhh
Q 003957 497 LGRTRKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSI-IINILES 574 (784)
Q Consensus 497 l~~l~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~-l~~~~~~ 574 (784)
+..+++|++|++ ++.+..++ .+ .+++|+.|+++++..+... .+. .+++|+.|+++.+.++..+ ....+..
T Consensus 303 l~~~~~L~~L~l~~n~l~~lp--~~--~l~~L~~L~l~~n~~~~~~---~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~~ 374 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQLKQFP--TL--DLPFLKSLTLTMNKGSISF---KKV-ALPSLSYLDLSRNALSFSGCCSYSDLG 374 (606)
T ss_dssp CCTTCCCSEEEEESCCCSSCC--CC--CCSSCCEEEEESCSSCEEC---CCC-CCTTCCEEECCSSCEEEEEECCHHHHC
T ss_pred ccccccCCEEEcccccCcccc--cC--CCCccceeeccCCcCccch---hhc-cCCCCCEEECcCCccCCCcchhhhhcc
Confidence 444556666666 33333222 22 5667777777776443322 222 3678888888776665432 1344677
Q ss_pred CCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCC
Q 003957 575 LRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPG 654 (784)
Q Consensus 575 l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~ 654 (784)
+++|++|++++|...... .....+++|++|+++++ .++.......+.++++|++|++++|...... .....++++
T Consensus 375 ~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~ 449 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHS--TLKRVTEFSAFLSLEKLLYLDISYTNTKIDF--DGIFLGLTS 449 (606)
T ss_dssp CSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTS--EEESTTTTTTTTTCTTCCEEECTTSCCEECC--TTTTTTCTT
T ss_pred CCcccEeECCCCccccch-hhccCCCCCCeeECCCC--ccCCccChhhhhccccCCEEECcCCCCCccc--hhhhcCCCC
Confidence 888888888888311111 23345688999999885 4443322123457889999999998865421 112346889
Q ss_pred CcEEeecCCCCCCHH-HHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCC
Q 003957 655 LISLHLEECGDITAY-GVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYS 732 (784)
Q Consensus 655 L~~L~L~~c~~i~~~-~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~ 732 (784)
|+.|++++|. ++.. .+..+.++++|+.|++++|.+ . ...+..+..+++|+.|++++|... + ..|. +.++++
T Consensus 450 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l--~-~~~~~~~~~l~~L~~L~Ls~N~l~-~--~~~~~~~~l~~ 522 (606)
T 3vq2_A 450 LNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQL--E-QISWGVFDTLHRLQLLNMSHNNLL-F--LDSSHYNQLYS 522 (606)
T ss_dssp CCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCC--C-EECTTTTTTCTTCCEEECCSSCCS-C--EEGGGTTTCTT
T ss_pred CCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCcC--C-ccChhhhcccccCCEEECCCCcCC-C--cCHHHccCCCc
Confidence 9999999886 5432 344456889999999999965 5 455667888999999999998766 2 1255 888999
Q ss_pred CCEEEecCCCCc
Q 003957 733 LSTVKITKCKSK 744 (784)
Q Consensus 733 L~~L~is~C~~~ 744 (784)
|++|++++|+..
T Consensus 523 L~~L~l~~N~l~ 534 (606)
T 3vq2_A 523 LSTLDCSFNRIE 534 (606)
T ss_dssp CCEEECTTSCCC
T ss_pred CCEEECCCCcCc
Confidence 999999999754
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-27 Score=273.65 Aligned_cols=224 Identities=14% Similarity=0.046 Sum_probs=145.1
Q ss_pred CccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHH-HHHHHhhCCCCc
Q 003957 502 KLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSI-IINILESLRRLQ 579 (784)
Q Consensus 502 ~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~-l~~~~~~l~~L~ 579 (784)
+|++|++ ++.+..++. ..+++|+.|+++++....... ...+++|+.|+++.+.++..+ ....+.++++|+
T Consensus 305 ~L~~L~l~~n~~~~l~~----~~l~~L~~L~l~~n~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 376 (570)
T 2z63_A 305 GWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAFS----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376 (570)
T ss_dssp CCSEEEEESCBCSSCCB----CBCSSCCEEEEESCBSCCBCC----CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCC
T ss_pred CccEEeeccCcccccCc----ccccccCEEeCcCCccccccc----cccCCCCCEEeCcCCccCccccccccccccCccC
Confidence 5666666 333332221 245667777777763221110 034788888888877766432 123466788899
Q ss_pred EEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEe
Q 003957 580 VLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLH 659 (784)
Q Consensus 580 ~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~ 659 (784)
+|++++|........ ...+++|++|++++| .++.......+.++++|++|++++|...... .....++++|+.|+
T Consensus 377 ~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~ 451 (570)
T 2z63_A 377 YLDLSFNGVITMSSN-FLGLEQLEHLDFQHS--NLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLK 451 (570)
T ss_dssp EEECCSCSEEEEEEE-EETCTTCCEEECTTS--EEESCTTSCTTTTCTTCCEEECTTSCCEECC--TTTTTTCTTCCEEE
T ss_pred EEECCCCcccccccc-ccccCCCCEEEccCC--ccccccchhhhhcCCCCCEEeCcCCcccccc--hhhhhcCCcCcEEE
Confidence 999988831111112 345688999999885 4443222223457889999999998765421 12234688999999
Q ss_pred ecCCCCCCH-HHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcc-c-ccCCCCCCEE
Q 003957 660 LEECGDITA-YGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIP-D-YADRYSLSTV 736 (784)
Q Consensus 660 L~~c~~i~~-~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~-~-~~~~~~L~~L 736 (784)
+++|. +++ ..+..+..+++|+.|++++|.+ . ...+..+..+++|+.|++++|... ++| . +..+++|++|
T Consensus 452 l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l--~-~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 452 MAGNS-FQENFLPDIFTELRNLTFLDLSQCQL--E-QLSPTAFNSLSSLQVLNMASNQLK----SVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CTTCE-EGGGEECSCCTTCTTCCEEECTTSCC--C-EECTTTTTTCTTCCEEECCSSCCS----CCCTTTTTTCTTCCEE
T ss_pred CcCCc-CccccchhhhhcccCCCEEECCCCcc--c-cCChhhhhcccCCCEEeCCCCcCC----CCCHHHhhcccCCcEE
Confidence 99887 432 2234456789999999999965 4 444667888999999999988665 334 3 7888999999
Q ss_pred EecCCCCcCc
Q 003957 737 KITKCKSKNR 746 (784)
Q Consensus 737 ~is~C~~~~~ 746 (784)
++++|+....
T Consensus 524 ~l~~N~~~~~ 533 (570)
T 2z63_A 524 WLHTNPWDCS 533 (570)
T ss_dssp ECCSSCBCCC
T ss_pred EecCCcccCC
Confidence 9999875443
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-27 Score=287.30 Aligned_cols=265 Identities=15% Similarity=0.044 Sum_probs=128.6
Q ss_pred CCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccC
Q 003957 435 SSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFS 513 (784)
Q Consensus 435 ~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~ 513 (784)
++|+.|++++|.+...... .+..+++|+.|+++++. ++... ...+..+++|++|+++ +.+.
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~-i~~~~----------------~~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYNK-INKIA----------------DEAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp SCCCEEECTTCCCCEECSC-CSSSCCCCCEEEEESCC-CCEEC----------------TTTTTTCSSCCEEEEESCCCS
T ss_pred CCccEEECCCCcccccChh-hhhcCCCCCEEECCCCc-CCCCC----------------hHHhcCCCCCCEEECCCCCCC
Confidence 4566666666655433211 12455666666665542 22111 0134445566666663 3333
Q ss_pred cccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHH
Q 003957 514 FLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSIS 593 (784)
Q Consensus 514 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~ 593 (784)
.... ..+..+++|+.|+++++ .+.......+ ..+++|+.|+++.|.++.. ..+++|+.|++++|.-.
T Consensus 328 ~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~i------~~~~~L~~L~l~~N~l~---- 394 (844)
T 3j0a_A 328 ELYS-SNFYGLPKVAYIDLQKN-HIAIIQDQTF-KFLEKLQTLDLRDNALTTI------HFIPSIPDIFLSGNKLV---- 394 (844)
T ss_dssp CCCS-CSCSSCTTCCEEECCSC-CCCCCCSSCS-CSCCCCCEEEEETCCSCCC------SSCCSCSEEEEESCCCC----
T ss_pred ccCH-HHhcCCCCCCEEECCCC-CCCccChhhh-cCCCCCCEEECCCCCCCcc------cCCCCcchhccCCCCcc----
Confidence 2211 12444556666666665 2221111111 2255666666666555531 22556666666666211
Q ss_pred HhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCH-----
Q 003957 594 SFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITA----- 668 (784)
Q Consensus 594 ~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~----- 668 (784)
.+.....+++.|++++ +.++..+......++++|+.|++++|....... ......+++|+.|++++|. ++.
T Consensus 395 ~l~~~~~~l~~L~ls~--N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~~L~~L~Ls~N~-l~~~~~~~ 470 (844)
T 3j0a_A 395 TLPKINLTANLIHLSE--NRLENLDILYFLLRVPHLQILILNQNRFSSCSG-DQTPSENPSLEQLFLGENM-LQLAWETE 470 (844)
T ss_dssp CCCCCCTTCCEEECCS--CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS-SSSSCSCTTCCBCEEESCC-CSSSCCSC
T ss_pred cccccccccceeeccc--CccccCchhhhhhcCCccceeeCCCCccccccc-ccccccCCccccccCCCCc-cccccccc
Confidence 1112234566666666 345544333344456666666666665542100 0011235666666666655 221
Q ss_pred HHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCC
Q 003957 669 YGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKS 743 (784)
Q Consensus 669 ~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~ 743 (784)
.....+.++++|+.|+|++|.+ + ...+..+.++++|+.|+|++|... .+|. +. ++|+.|++++|..
T Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l--~-~~~~~~~~~l~~L~~L~Ls~N~l~----~l~~~~~~--~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 471 LCWDVFEGLSHLQVLYLNHNYL--N-SLPPGVFSHLTALRGLSLNSNRLT----VLSHNDLP--ANLEILDISRNQL 538 (844)
T ss_dssp CCSSCSSCBCCEECCCCCHHHH--T-TCCTTSSSSCCSCSEEEEESCCCS----SCCCCCCC--SCCCEEEEEEECC
T ss_pred cchhhhcCcccccEEECCCCcc--c-ccChhHccchhhhheeECCCCCCC----ccChhhhh--ccccEEECCCCcC
Confidence 1112234556666666666643 2 333334556666666666666544 2333 32 5666666666654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=247.30 Aligned_cols=413 Identities=14% Similarity=0.079 Sum_probs=258.8
Q ss_pred CCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhcc
Q 003957 287 GPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSE 366 (784)
Q Consensus 287 ~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~ 366 (784)
...+++|++|++++|. ++......+ ..+++|++|++++|.. +... +..+.++++|++|++++|.+...+
T Consensus 46 ~~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~l-~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~------- 114 (549)
T 2z81_A 46 LRACANLQVLILKSSR-INTIEGDAF-YSLGSLEHLDLSDNHL-SSLS-SSWFGPLSSLKYLNLMGNPYQTLG------- 114 (549)
T ss_dssp TSSCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECTTSCC-CSCC-HHHHTTCTTCCEEECTTCCCSSSC-------
T ss_pred hhcCCcccEEECCCCC-cCccChhhc-cccccCCEEECCCCcc-CccC-HHHhccCCCCcEEECCCCcccccc-------
Confidence 3567899999999884 343222223 3578899999998643 3221 233567899999999998776411
Q ss_pred CCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCC
Q 003957 367 VPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDT 445 (784)
Q Consensus 367 l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~ 445 (784)
.|..+..+++|++|++++|..++...... +..+++|+.|++++|.++......+. .++|++|++++|
T Consensus 115 -----------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 115 -----------VTSLFPNLTNLQTLRIGNVETFSEIRRID-FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp -----------SSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred -----------hhhhhhccCCccEEECCCCccccccCHhh-hhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 23345778889999998886443221112 26788899999998888776666665 578888888888
Q ss_pred ccchhhHHHHHhcCCCccEEeccCCCcccccccccc--ccccCCCC-------------chhhHHhhhcCCCccEEEecc
Q 003957 446 MISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGR--GIEFSSYP-------------CADLFAELGRTRKLEEIVLGW 510 (784)
Q Consensus 446 ~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~--~~~~~~~~-------------~~~~~~~l~~l~~L~~L~L~~ 510 (784)
.+.... ..+...+++|++|+++++. ++...+... ...++.+. ...+...+..++.|+.+++..
T Consensus 183 ~~~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 183 ESAFLL-EIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp BSTTHH-HHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred cccccc-hhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 765433 2334567888888887763 222111100 00000000 011222334455666666632
Q ss_pred -ccCcc-----cHhhhhhhcCcccEEEecCCCCCChH----HHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcE
Q 003957 511 -GFSFL-----SLEVLKPAIKLLHSITVGLGGSLGED----ALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQV 580 (784)
Q Consensus 511 -~~~~~-----~~~~~~~~l~~L~~L~L~~~~~l~~~----~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~ 580 (784)
.+... .....+..+.+|+.|++.++. ++.. .+..+....++|+.|+++.+.++.. ...++.++++|++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i-p~~~~~~l~~L~~ 338 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV-PCSFSQHLKSLEF 338 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC-CHHHHHHCTTCCE
T ss_pred ccccccccccccchhhhhhhcccccccccccc-cchhhhcccchhhhhhcccceEEEeccCccccC-CHHHHhcCccccE
Confidence 11110 001123345567777766652 1110 0011112356799999987777643 2234467899999
Q ss_pred EEeccc-CChhHHHH--hhcCCCCccEEEccCCCCCCChHHH-HHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCc
Q 003957 581 LAICHC-LGDLSISS--FKLPLPNLRKLKLERVTPWMTNNDL-VILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLI 656 (784)
Q Consensus 581 L~Ls~c-~~~~~~~~--l~~~~~~L~~L~L~~c~~~l~~~~l-~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~ 656 (784)
|++++| +.+..+.. ....+++|++|++++| .++.... ...+..+++|++|++++|.... .......+++|+
T Consensus 339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~~~~L~ 413 (549)
T 2z81_A 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN--HLRSMQKTGEILLTLKNLTSLDISRNTFHP---MPDSCQWPEKMR 413 (549)
T ss_dssp EECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS--CCCCHHHHHHHGGGCTTCCEEECTTCCCCC---CCSCCCCCTTCC
T ss_pred EEccCCccccccccchhhhhccccCcEEEccCC--cccccccchhhhhcCCCCCEEECCCCCCcc---CChhhccccccc
Confidence 999999 44444332 2456689999999994 6765432 3456788999999999997653 111223578999
Q ss_pred EEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCEE
Q 003957 657 SLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTV 736 (784)
Q Consensus 657 ~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L 736 (784)
.|++++|. ++.... .-.++|+.|++++|.+ + .. ...+++|++|++++|... .+|....+++|++|
T Consensus 414 ~L~Ls~N~-l~~l~~---~~~~~L~~L~Ls~N~l--~--~~---~~~l~~L~~L~Ls~N~l~----~ip~~~~l~~L~~L 478 (549)
T 2z81_A 414 FLNLSSTG-IRVVKT---CIPQTLEVLDVSNNNL--D--SF---SLFLPRLQELYISRNKLK----TLPDASLFPVLLVM 478 (549)
T ss_dssp EEECTTSC-CSCCCT---TSCTTCSEEECCSSCC--S--CC---CCCCTTCCEEECCSSCCS----SCCCGGGCTTCCEE
T ss_pred EEECCCCC-cccccc---hhcCCceEEECCCCCh--h--hh---cccCChhcEEECCCCccC----cCCCcccCccCCEE
Confidence 99999987 442110 1236899999999976 3 21 357899999999998765 56776678999999
Q ss_pred EecCCCCcCc
Q 003957 737 KITKCKSKNR 746 (784)
Q Consensus 737 ~is~C~~~~~ 746 (784)
++++|+....
T Consensus 479 ~Ls~N~l~~~ 488 (549)
T 2z81_A 479 KISRNQLKSV 488 (549)
T ss_dssp ECCSSCCCCC
T ss_pred ecCCCccCCc
Confidence 9999976543
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-25 Score=253.18 Aligned_cols=206 Identities=14% Similarity=0.070 Sum_probs=140.1
Q ss_pred hhcCcccEEEecCCCC-CChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCC
Q 003957 522 PAIKLLHSITVGLGGS-LGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPL 599 (784)
Q Consensus 522 ~~l~~L~~L~L~~~~~-l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~ 599 (784)
..+++|+.++++++.. ++...+..+.. .++|+.|+++.+.+..... ...+++|++|++++| +.+..+..+ ..+
T Consensus 273 ~~l~~L~~l~l~~n~~~~p~~~~~~~~~-~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l 347 (520)
T 2z7x_B 273 TSLKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENC-GHL 347 (520)
T ss_dssp CCCCEEEEEEEEECCCCSCTHHHHHHHH-TCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTC-CCC
T ss_pred ccCceeEeccccccceecchhhhhcccc-cCceeEEEcCCCccccccc---hhhCCcccEEEeECCccChhhhhhh-ccC
Confidence 3455566666665532 22222222211 2468888887766655321 246788899999888 333233333 456
Q ss_pred CCccEEEccCCCCCCChH-HHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCC
Q 003957 600 PNLRKLKLERVTPWMTNN-DLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCI 678 (784)
Q Consensus 600 ~~L~~L~L~~c~~~l~~~-~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~ 678 (784)
++|++|+++++ .++.. .+...+..+++|++|++++|........ ....++++|+.|++++|. ++...+..+ .+
T Consensus 348 ~~L~~L~L~~N--~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~l--~~ 421 (520)
T 2z7x_B 348 TELETLILQMN--QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-GDCSWTKSLLSLNMSSNI-LTDTIFRCL--PP 421 (520)
T ss_dssp SSCCEEECCSS--CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG-CSCCCCTTCCEEECCSSC-CCGGGGGSC--CT
T ss_pred CCCCEEEccCC--ccCccccchHHHhhCCCCCEEECCCCcCCccccc-chhccCccCCEEECcCCC-CCcchhhhh--cc
Confidence 89999999994 67653 3445567889999999999987652221 122457899999999987 654333222 27
Q ss_pred CCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCcCc
Q 003957 679 ALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 679 ~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~~~ 746 (784)
+|+.|++++|.+ ..++..+..+++|+.|++++|... .+|. +..+++|++|++++|+....
T Consensus 422 ~L~~L~Ls~N~l----~~ip~~~~~l~~L~~L~L~~N~l~----~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 422 RIKVLDLHSNKI----KSIPKQVVKLEALQELNVASNQLK----SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TCCEEECCSSCC----CCCCGGGGGCTTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCEEECCCCcc----cccchhhhcCCCCCEEECCCCcCC----ccCHHHhccCCcccEEECcCCCCccc
Confidence 999999999987 566666779999999999998766 4565 78899999999999986543
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-25 Score=271.17 Aligned_cols=469 Identities=14% Similarity=0.066 Sum_probs=292.4
Q ss_pred cCeEEeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCcee
Q 003957 176 LPIFSFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVS 255 (784)
Q Consensus 176 l~~~~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~ 255 (784)
+|. ..+++++|||++|.-.... ...+..+++|++|++++|..+....... +.++++|++|+|+++.-..+
T Consensus 19 vP~-lp~~l~~LdLs~N~i~~i~---~~~~~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N~l~~~----- 88 (844)
T 3j0a_A 19 VPQ-VLNTTERLLLSFNYIRTVT---ASSFPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSSKIYFL----- 88 (844)
T ss_dssp CCS-SCTTCCEEEEESCCCCEEC---SSSCSSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTCCCCEE-----
T ss_pred CCC-CCCCcCEEECCCCcCCccC---hhHCcccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCCcCccc-----
Confidence 555 5578999999987532210 0113578899999999864433221222 34788999999996432111
Q ss_pred eeecCCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHH-HHHcCCCCCeEecCCCCccCHHH
Q 003957 256 VVSSSSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEF-ISKYCVSLGYINIKGCVSVTDVC 334 (784)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~-l~~~~~~L~~L~L~~c~~l~~~~ 334 (784)
.+.....+++|++|+|++|.. ++..+.. ....+++|++|++++|.. +...
T Consensus 89 ---------------------------~p~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~L~~L~~L~Ls~N~l-~~~~ 139 (844)
T 3j0a_A 89 ---------------------------HPDAFQGLFHLFELRLYFCGL-SDAVLKDGYFRNLKALTRLDLSKNQI-RSLY 139 (844)
T ss_dssp ---------------------------CTTSSCSCSSCCCEECTTCCC-SSCCSTTCCCSSCSSCCEEEEESCCC-CCCC
T ss_pred ---------------------------CHhHccCCcccCEeeCcCCCC-CcccccCccccccCCCCEEECCCCcc-cccc
Confidence 112246778999999998853 3211111 123578889999888643 2222
Q ss_pred HHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcC--CCccEEEecCCCCCCHHHHHHHHHhCc
Q 003957 335 ISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLA--SNLQMLHMACCNGVDGMYLLELMCQAR 412 (784)
Q Consensus 335 l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l--~~L~~L~L~~c~~l~~~~l~~l~~~~~ 412 (784)
....+.++++|+.|++++|.+..... ..+..+ ++|+.|++++|........ . ...++
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~i~~~~~-------------------~~l~~l~~~~L~~L~L~~n~l~~~~~~-~-~~~~~ 198 (844)
T 3j0a_A 140 LHPSFGKLNSLKSIDFSSNQIFLVCE-------------------HELEPLQGKTLSFFSLAANSLYSRVSV-D-WGKCM 198 (844)
T ss_dssp CCGGGGTCSSCCEEEEESSCCCCCCS-------------------GGGHHHHHCSSCCCEECCSBSCCCCCC-C-CCSSS
T ss_pred cchhHhhCCCCCEEECCCCcCCeeCH-------------------HHcccccCCccceEECCCCcccccccc-c-hhhcC
Confidence 22345678888888888887654211 111222 6888888888754321100 0 02222
Q ss_pred ------cccEEEecCCcCchhhhhhcc----cCCcCEEEecCC---------ccchhhHHHHHhc--CCCccEEeccCCC
Q 003957 413 ------KLKSLCLSGTQLADKALYNFS----GSSLEMLDVSDT---------MISGAALAYMVHG--NSGLKYLNARGCK 471 (784)
Q Consensus 413 ------~L~~L~Ls~~~l~~~~~~~l~----~~~L~~L~Ls~~---------~i~~~~l~~~~~~--l~~L~~L~L~~c~ 471 (784)
.|+.|++++|.++......+. ...++.|.++++ .+.......+ .+ .++|+.|+++++.
T Consensus 199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f-~~l~~~~L~~L~Ls~n~ 277 (844)
T 3j0a_A 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF-AGLARSSVRHLDLSHGF 277 (844)
T ss_dssp CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT-TTTTTSCCCEEECTTCC
T ss_pred CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh-hccccCCccEEECCCCc
Confidence 488888888876655544433 467888887632 1222221111 22 3688999988763
Q ss_pred ccccccccccccccCCCCchhhHHhhhcCCCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccC
Q 003957 472 NLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTC 550 (784)
Q Consensus 472 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~ 550 (784)
+.... ...+..+++|+.|++ ++.+...... .+..+++|+.|+++++. ++......+. .+
T Consensus 278 -l~~~~----------------~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l 337 (844)
T 3j0a_A 278 -VFSLN----------------SRVFETLKDLKVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNL-LGELYSSNFY-GL 337 (844)
T ss_dssp -CCEEC----------------SCCSSSCCCCCEEEEESCCCCEECTT-TTTTCSSCCEEEEESCC-CSCCCSCSCS-SC
T ss_pred -ccccC----------------hhhhhcCCCCCEEECCCCcCCCCChH-HhcCCCCCCEEECCCCC-CCccCHHHhc-CC
Confidence 32211 114566788999999 4455544333 45678899999999883 3221111222 37
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCC
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSEL 629 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L 629 (784)
++|+.|+++.|.++... ...+.++++|+.|++++|. .. + ..+++|+.|.++++ .++.. .....++
T Consensus 338 ~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~-----i-~~~~~L~~L~l~~N--~l~~l-----~~~~~~l 403 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALTT-----I-HFIPSIPDIFLSGN--KLVTL-----PKINLTA 403 (844)
T ss_dssp TTCCEEECCSCCCCCCC-SSCSCSCCCCCEEEEETCCSCC-----C-SSCCSCSEEEEESC--CCCCC-----CCCCTTC
T ss_pred CCCCEEECCCCCCCccC-hhhhcCCCCCCEEECCCCCCCc-----c-cCCCCcchhccCCC--Ccccc-----ccccccc
Confidence 88999999877776532 2235678899999999883 21 1 12688999999994 55521 2235689
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHH-HHhhCCCCCCEEEcccCCCCC-C-hhHHHHHHhcCCC
Q 003957 630 VELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGV-TSLFNCIALEDLLLRHNGPGI-P-RDFILDAASKMPM 706 (784)
Q Consensus 630 ~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~-~~l~~~~~L~~L~L~~n~~gl-~-~~~~~~~l~~l~~ 706 (784)
+.|++++|......... ...++++|+.|+|++|. ++.... ..+..+++|+.|++++|.+.. . ....+..+.++++
T Consensus 404 ~~L~ls~N~l~~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~ 481 (844)
T 3j0a_A 404 NLIHLSENRLENLDILY-FLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481 (844)
T ss_dssp CEEECCSCCCCSSTTHH-HHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred ceeecccCccccCchhh-hhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCCccccccccccchhhhcCccc
Confidence 99999998876533222 33479999999999987 442211 123368999999999997510 0 0112234678899
Q ss_pred CceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCcC
Q 003957 707 LRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 707 L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~~ 745 (784)
|+.|+|++|... .+|+ +..+++|++|++++|....
T Consensus 482 L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 482 LQVLYLNHNYLN----SLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp EECCCCCHHHHT----TCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred ccEEECCCCccc----ccChhHccchhhhheeECCCCCCCc
Confidence 999999999766 3344 8899999999999997543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-26 Score=266.65 Aligned_cols=457 Identities=15% Similarity=0.076 Sum_probs=259.6
Q ss_pred CcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeecCC
Q 003957 182 EAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSSSS 261 (784)
Q Consensus 182 ~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~~~ 261 (784)
+++++|+++++.-..... ..+..+++|++|++++| .++......+ ..+++|++|+|+++.-..++.
T Consensus 28 ~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n-~i~~i~~~~~-~~l~~L~~L~L~~n~l~~~~~--------- 93 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGNPIQSLAL--------- 93 (570)
T ss_dssp SSCCEEECCSCCCCEECT---TTTTTCSSCCEEECTTC-CCCEECTTTT-TTCTTCCEEECTTCCCCEECT---------
T ss_pred ccccEEEccCCccCccCh---hHhhCCCCceEEECCCC-cCCccCcccc-cCchhCCEEeCcCCcCCccCH---------
Confidence 467777777764322110 11245777777777773 4443222222 367777777777543211111
Q ss_pred ccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHh
Q 003957 262 ALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRR 341 (784)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~ 341 (784)
.....+++|++|++++|.. +...... ...+++|++|++++|.. +...++..+.+
T Consensus 94 -----------------------~~~~~l~~L~~L~L~~n~l-~~l~~~~-~~~l~~L~~L~L~~n~l-~~~~lp~~~~~ 147 (570)
T 2z63_A 94 -----------------------GAFSGLSSLQKLVAVETNL-ASLENFP-IGHLKTLKELNVAHNLI-QSFKLPEYFSN 147 (570)
T ss_dssp -----------------------TTTTTCTTCCEEECTTSCC-CCSTTCS-CTTCTTCCEEECCSSCC-CCCCCCGGGGG
T ss_pred -----------------------hhhcCcccccccccccccc-ccCCCcc-ccccccccEEecCCCcc-ceecChhhhcc
Confidence 1134556666666666532 2111001 12366666666666432 21112223445
Q ss_pred CCCCCEEEeeCCCCCHH---HHHHhhccCC------ccCccccccc-chhhhcCCCccEEEecCCCCCCHHHHHHHHHhC
Q 003957 342 CVKLQSIIVCDTSFGVY---SIRALCSEVP------YCNSSALCGK-RNFNTLASNLQMLHMACCNGVDGMYLLELMCQA 411 (784)
Q Consensus 342 ~~~L~~L~Ls~~~i~~~---~l~~l~~~l~------~~~~~~~~~~-~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~ 411 (784)
+++|++|++++|.+... .+..+. .+. +........+ +..+. ..+|+.|+++++..-. ..++.....+
T Consensus 148 l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~~~~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~-~~~~~~~~~l 224 (570)
T 2z63_A 148 LTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSL-NVMKTCIQGL 224 (570)
T ss_dssp CTTCCEEECTTSCCCEECGGGGHHHH-TCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSCT-THHHHHHHTT
T ss_pred cCCCCEEeCcCCccceecHHHccchh-ccchhhhhcccCCCCceecCHHHhc-cCcceeEecccccccc-cchhhhhcCc
Confidence 66666666666655431 111111 010 0000001111 22222 2378888888874322 2344444566
Q ss_pred ccccEEEecC--------------------------------C-cCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHh
Q 003957 412 RKLKSLCLSG--------------------------------T-QLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVH 457 (784)
Q Consensus 412 ~~L~~L~Ls~--------------------------------~-~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~ 457 (784)
++++.+.+.. + .+.+.....+. .++|+.|++++|.+.. +.....
T Consensus 225 ~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--l~~~~~ 302 (570)
T 2z63_A 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSY 302 (570)
T ss_dssp TTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS--CCBCCS
T ss_pred cccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh--hhhhhc
Confidence 6665544432 1 11111122222 3677777777776543 112223
Q ss_pred cCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCC
Q 003957 458 GNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGS 537 (784)
Q Consensus 458 ~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 537 (784)
.+ +|++|++.+|.. ...+ ...+++|++|++..+....... ...+++|+.|+++++.
T Consensus 303 ~~-~L~~L~l~~n~~-~~l~-------------------~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~n~- 358 (570)
T 2z63_A 303 NF-GWQHLELVNCKF-GQFP-------------------TLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNG- 358 (570)
T ss_dssp CC-CCSEEEEESCBC-SSCC-------------------BCBCSSCCEEEEESCBSCCBCC--CCBCTTCCEEECCSSC-
T ss_pred cC-CccEEeeccCcc-cccC-------------------cccccccCEEeCcCCccccccc--cccCCCCCEEeCcCCc-
Confidence 44 777777777632 2111 1356789999994332211111 1567899999999883
Q ss_pred CChHH--HHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCC
Q 003957 538 LGEDA--LRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWM 614 (784)
Q Consensus 538 l~~~~--l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l 614 (784)
++... ...+. .+++|+.|+++.+.++.... .+.++++|++|++++|. ...........+++|++|++++| .+
T Consensus 359 l~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l 433 (570)
T 2z63_A 359 LSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--HT 433 (570)
T ss_dssp CBEEEEEEHHHH-TCSCCCEEECCSCSEEEEEE--EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS--CC
T ss_pred cCcccccccccc-ccCccCEEECCCCccccccc--cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC--cc
Confidence 33211 11222 47889999998777665321 16678999999999983 32222223456799999999996 44
Q ss_pred ChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCCh
Q 003957 615 TNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPR 694 (784)
Q Consensus 615 ~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~ 694 (784)
+.. ....+.++++|++|++++|...... ......++++|+.|++++|. ++...+..+.++++|+.|++++|.+ .
T Consensus 434 ~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l--~- 507 (570)
T 2z63_A 434 RVA-FNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQL--K- 507 (570)
T ss_dssp EEC-CTTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCC--S-
T ss_pred ccc-chhhhhcCCcCcEEECcCCcCcccc-chhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCcC--C-
Confidence 432 2233457899999999999864211 11223568999999999987 6666566777899999999999976 4
Q ss_pred hHHHHHHhcCCCCceecccccccc
Q 003957 695 DFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 695 ~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
...+..+..+++|+.|++++|+..
T Consensus 508 ~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 508 SVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCHHHhhcccCCcEEEecCCccc
Confidence 444556889999999999998876
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-25 Score=257.96 Aligned_cols=328 Identities=13% Similarity=0.100 Sum_probs=166.2
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHh------Cccc
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQ------ARKL 414 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~------~~~L 414 (784)
++++|++|++++|.+.. .+|..+..+++|++|++++|..++...++..+.. +++|
T Consensus 247 ~l~~L~~L~L~~n~l~~-------------------~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L 307 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLT-------------------KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307 (636)
T ss_dssp GCTTCCEEEEECCTTCS-------------------SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTC
T ss_pred ccCCCCEEEecCCcCCc-------------------cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCC
Confidence 56667777776665433 1444456666777777777664443123222233 2666
Q ss_pred cEEEecCCcCchhhh-hhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchh
Q 003957 415 KSLCLSGTQLADKAL-YNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCAD 492 (784)
Q Consensus 415 ~~L~Ls~~~l~~~~~-~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~ 492 (784)
+.|++++|.++.... ..+. .++|++|++++|.+++... .+..+++|++|+++++. ++.
T Consensus 308 ~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~-l~~----------------- 367 (636)
T 4eco_A 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQ-ITE----------------- 367 (636)
T ss_dssp CEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSE-EEE-----------------
T ss_pred CEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCc-ccc-----------------
Confidence 677666666652211 1333 4566666666665552211 23455666666665542 211
Q ss_pred hHHhhhcCCC-ccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHH
Q 003957 493 LFAELGRTRK-LEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIIN 570 (784)
Q Consensus 493 ~~~~l~~l~~-L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~ 570 (784)
+...+..+++ |++|+++ +.+..++. .+.... +++|+.|+++.|.++... +.
T Consensus 368 lp~~l~~l~~~L~~L~Ls~N~l~~lp~--~~~~~~------------------------l~~L~~L~Ls~N~l~~~~-p~ 420 (636)
T 4eco_A 368 IPANFCGFTEQVENLSFAHNKLKYIPN--IFDAKS------------------------VSVMSAIDFSYNEIGSVD-GK 420 (636)
T ss_dssp CCTTSEEECTTCCEEECCSSCCSSCCS--CCCTTC------------------------SSCEEEEECCSSCTTTTT-TC
T ss_pred ccHhhhhhcccCcEEEccCCcCcccch--hhhhcc------------------------cCccCEEECcCCcCCCcc-hh
Confidence 1113444444 5555552 22222111 111111 123444444444443321 01
Q ss_pred HHh-------hCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHH------HhcCCCCcEEEecCC
Q 003957 571 ILE-------SLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVIL------TQNCSELVELSLVGC 637 (784)
Q Consensus 571 ~~~-------~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l------~~~~~~L~~L~Ls~c 637 (784)
.+. .+++|+.|++++|........+...+++|++|+++++ .++......+ ..++++|++|++++|
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N--~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN--MLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS--CCSBCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC--CCCCcCHHHhccccccccccCCccEEECcCC
Confidence 111 2335555555555211222222233455555555552 3331110000 012237777777777
Q ss_pred CCCChHHHHHHH-hcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCC----CCChhHHHHHHhcCCCCceecc
Q 003957 638 TLLSSDSQLIIS-QGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGP----GIPRDFILDAASKMPMLRLVSL 712 (784)
Q Consensus 638 ~~~~~~~~~~~~-~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~----gl~~~~~~~~l~~l~~L~~L~L 712 (784)
.+.. ....+. ..+++|+.|+|++|. ++. .+..+.++++|+.|++++|.. .+. ..++..+..+++|+.|+|
T Consensus 499 ~l~~--lp~~~~~~~l~~L~~L~Ls~N~-l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~-~~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 499 KLTK--LSDDFRATTLPYLVGIDLSYNS-FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTL-REWPEGITLCPSLTQLQI 573 (636)
T ss_dssp CCCB--CCGGGSTTTCTTCCEEECCSSC-CSS-CCCGGGGCSSCCEEECCSCBCTTCCBCC-CCCCTTGGGCSSCCEEEC
T ss_pred cCCc--cChhhhhccCCCcCEEECCCCC-CCC-cChhhhcCCCCCEEECCCCcccccCccc-ccChHHHhcCCCCCEEEC
Confidence 6552 111121 257788888888776 443 334455788888888854320 112 445666778888888888
Q ss_pred ccccccCCCCCccc-ccCCCCCCEEEecCCCCcCcc
Q 003957 713 DLCDASDGNFEIPD-YADRYSLSTVKITKCKSKNRN 747 (784)
Q Consensus 713 ~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~~~ 747 (784)
++|... .+|. +. ++|++|++++|+.....
T Consensus 574 s~N~l~----~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 574 GSNDIR----KVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CSSCCC----BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CCCcCC----ccCHhHh--CcCCEEECcCCCCcccc
Confidence 888773 4566 44 78888888888765443
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-23 Score=235.68 Aligned_cols=397 Identities=14% Similarity=0.062 Sum_probs=243.7
Q ss_pred CCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCcc
Q 003957 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYC 370 (784)
Q Consensus 291 ~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~ 370 (784)
++|++|++++|. ++......+ ..+++|++|++++|.. +... +..+.++++|++|++++|.++.
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~l-~~~~-~~~~~~l~~L~~L~Ls~N~l~~------------- 83 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDI-LSLSKLRILIISHNRI-QYLD-ISVFKFNQELEYLDLSHNKLVK------------- 83 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHH-TTCTTCCEEECCSSCC-CEEE-GGGGTTCTTCCEEECCSSCCCE-------------
T ss_pred ccccEEECCCCc-ccccChhhc-cccccccEEecCCCcc-CCcC-hHHhhcccCCCEEecCCCceee-------------
Confidence 789999999885 333222333 3588899999988643 3211 2234678899999999988775
Q ss_pred CcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCc--CEEEecCCcc-
Q 003957 371 NSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSL--EMLDVSDTMI- 447 (784)
Q Consensus 371 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L--~~L~Ls~~~i- 447 (784)
+|.. .+++|++|++++|.... ..++..+..+++|+.|++++|.++...+..+ ++| ++|++++|.+
T Consensus 84 -------lp~~--~l~~L~~L~L~~N~l~~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l--~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 84 -------ISCH--PTVNLKHLDLSFNAFDA-LPICKEFGNMSQLKFLGLSTTHLEKSSVLPI--AHLNISKVLLVLGETY 151 (520)
T ss_dssp -------EECC--CCCCCSEEECCSSCCSS-CCCCGGGGGCTTCCEEEEEESSCCGGGGGGG--TTSCEEEEEEEECTTT
T ss_pred -------cCcc--ccCCccEEeccCCcccc-ccchhhhccCCcceEEEecCcccchhhcccc--ccceeeEEEeeccccc
Confidence 4443 67888888888886522 1111223678888888888888776544433 455 8888888876
Q ss_pred -chhhHHHHH-------------------------hcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCC
Q 003957 448 -SGAALAYMV-------------------------HGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTR 501 (784)
Q Consensus 448 -~~~~l~~~~-------------------------~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 501 (784)
.......+. ..+++|+.|+++++..... |.. .......+..++
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~---------~~~--~~~~~~~l~~l~ 220 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK---------CSY--FLSILAKLQTNP 220 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT---------THH--HHHHHHGGGGCT
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc---------cce--eecchhhhcccc
Confidence 332221110 1233444444433321000 000 011223566677
Q ss_pred CccEEEec-cccCcccHhhhhh--hcCcccEEEecCCCCCChHHHHHh----hccCCCCcEEEeeeecc--ChHHHHHHH
Q 003957 502 KLEEIVLG-WGFSFLSLEVLKP--AIKLLHSITVGLGGSLGEDALRLL----PTTCPMLELVVLYFQVM--SDSIIINIL 572 (784)
Q Consensus 502 ~L~~L~L~-~~~~~~~~~~~~~--~l~~L~~L~L~~~~~l~~~~l~~l----~~~~~~L~~L~L~~~~i--~~~~l~~~~ 572 (784)
+|+.|++. ..++........+ ..++|+.|+++++. +.+.....+ ...++.|+.++++.+.+ ....+...+
T Consensus 221 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~ 299 (520)
T 2z7x_B 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299 (520)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE-EESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHH
T ss_pred chhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc-ccCccccchhhcccccCceeEeccccccceecchhhhhccc
Confidence 78888773 3333222222222 13478888887762 111100111 02356677777765554 112222222
Q ss_pred hhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhc
Q 003957 573 ESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQG 651 (784)
Q Consensus 573 ~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~ 651 (784)
. .++|+.|++++|. .... +...+++|++|+++++ .++.... ..+..+++|++|++++|.+..-........+
T Consensus 300 ~-~~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~Ls~n--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 372 (520)
T 2z7x_B 300 S-NMNIKNFTVSGTRMVHML---CPSKISPFLHLDFSNN--LLTDTVF-ENCGHLTELETLILQMNQLKELSKIAEMTTQ 372 (520)
T ss_dssp H-TCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSS--CCCTTTT-TTCCCCSSCCEEECCSSCCCBHHHHHHHHTT
T ss_pred c-cCceeEEEcCCCcccccc---chhhCCcccEEEeECC--ccChhhh-hhhccCCCCCEEEccCCccCccccchHHHhh
Confidence 2 2578999998883 2111 1146789999999995 5665322 2335789999999999988763333444567
Q ss_pred CCCCcEEeecCCCCCCH-HHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccC
Q 003957 652 WPGLISLHLEECGDITA-YGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YAD 729 (784)
Q Consensus 652 ~~~L~~L~L~~c~~i~~-~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~ 729 (784)
+++|+.|++++|. ++. .....+..+++|+.|++++|.+ . ...+..+. ++|+.|++++|... .+|. +..
T Consensus 373 l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l--~-~~~~~~l~--~~L~~L~Ls~N~l~----~ip~~~~~ 442 (520)
T 2z7x_B 373 MKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNIL--T-DTIFRCLP--PRIKVLDLHSNKIK----SIPKQVVK 442 (520)
T ss_dssp CTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCC--C-GGGGGSCC--TTCCEEECCSSCCC----CCCGGGGG
T ss_pred CCCCCEEECCCCc-CCcccccchhccCccCCEEECcCCCC--C-cchhhhhc--ccCCEEECCCCccc----ccchhhhc
Confidence 9999999999987 554 3333456789999999999965 4 32222221 79999999998766 5687 779
Q ss_pred CCCCCEEEecCCCCcC
Q 003957 730 RYSLSTVKITKCKSKN 745 (784)
Q Consensus 730 ~~~L~~L~is~C~~~~ 745 (784)
+++|++|++++|+...
T Consensus 443 l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 443 LEALQELNVASNQLKS 458 (520)
T ss_dssp CTTCCEEECCSSCCCC
T ss_pred CCCCCEEECCCCcCCc
Confidence 9999999999997653
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-22 Score=224.99 Aligned_cols=142 Identities=18% Similarity=0.175 Sum_probs=78.6
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCc
Q 003957 290 PSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPY 369 (784)
Q Consensus 290 l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~ 369 (784)
+++|++|+++++.. +. +..+ ..+++|++|++++|.. ++.. . +.++++|+.|++++|.+..
T Consensus 45 l~~l~~L~l~~~~i-~~--l~~~-~~l~~L~~L~Ls~n~l-~~~~--~-~~~l~~L~~L~l~~n~l~~------------ 104 (466)
T 1o6v_A 45 LDQVTTLQADRLGI-KS--IDGV-EYLNNLTQINFSNNQL-TDIT--P-LKNLTKLVDILMNNNQIAD------------ 104 (466)
T ss_dssp HHTCCEEECCSSCC-CC--CTTG-GGCTTCCEEECCSSCC-CCCG--G-GTTCTTCCEEECCSSCCCC------------
T ss_pred hccccEEecCCCCC-cc--Ccch-hhhcCCCEEECCCCcc-CCch--h-hhccccCCEEECCCCcccc------------
Confidence 46778888877642 22 1122 3467777777777543 2211 1 4566777777777776654
Q ss_pred cCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccc
Q 003957 370 CNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMIS 448 (784)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~ 448 (784)
++. +..+++|++|++++|...... . ...+++|+.|++++|.+++.. .+. .++|++|+++++. .
T Consensus 105 --------~~~-~~~l~~L~~L~L~~n~l~~~~---~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~~~-~ 168 (466)
T 1o6v_A 105 --------ITP-LANLTNLTGLTLFNNQITDID---P-LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQV-T 168 (466)
T ss_dssp --------CGG-GTTCTTCCEEECCSSCCCCCG---G-GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEEESC-C
T ss_pred --------Chh-hcCCCCCCEEECCCCCCCCCh---H-HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecCCcc-c
Confidence 222 356677777777766442211 1 256677777777766555432 222 4666666665432 1
Q ss_pred hhhHHHHHhcCCCccEEeccCC
Q 003957 449 GAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 449 ~~~l~~~~~~l~~L~~L~L~~c 470 (784)
... . +..+++|++|++++|
T Consensus 169 ~~~--~-~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 169 DLK--P-LANLTTLERLDISSN 187 (466)
T ss_dssp CCG--G-GTTCTTCCEEECCSS
T ss_pred Cch--h-hccCCCCCEEECcCC
Confidence 111 1 345666666666655
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=249.78 Aligned_cols=323 Identities=13% Similarity=0.072 Sum_probs=166.5
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHh-------Ccc
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQ-------ARK 413 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~-------~~~ 413 (784)
++++|+.|++++|.+.. .+|..+..+++|+.|+|++|..++...++..+.. +++
T Consensus 489 ~L~~L~~L~Ls~N~l~~-------------------~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~ 549 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMT-------------------QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549 (876)
T ss_dssp GCTTCCEEEEESCTTCC-------------------SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT
T ss_pred cCCCCCEEECcCCCCCc-------------------cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCC
Confidence 56667777776665432 1444556667777777776654443122222233 336
Q ss_pred ccEEEecCCcCchhhh-hhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCch
Q 003957 414 LKSLCLSGTQLADKAL-YNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCA 491 (784)
Q Consensus 414 L~~L~Ls~~~l~~~~~-~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~ 491 (784)
|+.|++++|.++.... ..+. .++|+.|++++|.++... .+..+++|+.|+++++.. +.
T Consensus 550 L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l-~~---------------- 609 (876)
T 4ecn_A 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQI-EE---------------- 609 (876)
T ss_dssp CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCC-SC----------------
T ss_pred ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCcc-cc----------------
Confidence 6666666666652211 1333 456666666666555221 234556666666655532 11
Q ss_pred hhHHhhhcCCC-ccEEEec-cccCcccHhhhhhhc--CcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHH
Q 003957 492 DLFAELGRTRK-LEEIVLG-WGFSFLSLEVLKPAI--KLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSI 567 (784)
Q Consensus 492 ~~~~~l~~l~~-L~~L~L~-~~~~~~~~~~~~~~l--~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~ 567 (784)
++..+..+++ |+.|+++ +.+..++ ..+... .+|+.|+++++ .+++..
T Consensus 610 -lp~~l~~l~~~L~~L~Ls~N~L~~lp--~~~~~~~~~~L~~L~Ls~N--------------------------~l~g~i 660 (876)
T 4ecn_A 610 -IPEDFCAFTDQVEGLGFSHNKLKYIP--NIFNAKSVYVMGSVDFSYN--------------------------KIGSEG 660 (876)
T ss_dssp -CCTTSCEECTTCCEEECCSSCCCSCC--SCCCTTCSSCEEEEECCSS--------------------------CTTTTS
T ss_pred -chHHHhhccccCCEEECcCCCCCcCc--hhhhccccCCCCEEECcCC--------------------------cCCCcc
Confidence 1113444444 5555552 2233211 111222 12555555544 333210
Q ss_pred HHHH---Hh--hCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHH------HHhcCCCCcEEEecC
Q 003957 568 IINI---LE--SLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVI------LTQNCSELVELSLVG 636 (784)
Q Consensus 568 l~~~---~~--~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~------l~~~~~~L~~L~Ls~ 636 (784)
+.+ +. .+++|+.|++++|........+...+++|+.|+++++ .++...... ...+|++|++|++++
T Consensus 661 -p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N--~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 661 -RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN--LMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp -SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC--CCSCCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred -ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC--cCCccChHHhccccccccccCCccEEECCC
Confidence 000 00 1224555555555211222223333455555555552 333110000 011234778888887
Q ss_pred CCCCChHHHHHHH-hcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEccc------CCCCCChhHHHHHHhcCCCCce
Q 003957 637 CTLLSSDSQLIIS-QGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRH------NGPGIPRDFILDAASKMPMLRL 709 (784)
Q Consensus 637 c~~~~~~~~~~~~-~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~------n~~gl~~~~~~~~l~~l~~L~~ 709 (784)
|.+.. ....+. ..+++|+.|+|++|. ++. .+..+.++++|+.|+|++ |.+ . ..++..+..+++|+.
T Consensus 738 N~L~~--lp~~l~~~~l~~L~~L~Ls~N~-L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l--~-~~ip~~l~~L~~L~~ 810 (876)
T 4ecn_A 738 NKLTS--LSDDFRATTLPYLSNMDVSYNC-FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI--L-RQWPTGITTCPSLIQ 810 (876)
T ss_dssp SCCCC--CCGGGSTTTCTTCCEEECCSSC-CSS-CCCGGGGCTTCCEEECCCCBCTTCCBC--C-CCCCTTGGGCSSCCE
T ss_pred CCCcc--chHHhhhccCCCcCEEEeCCCC-CCc-cchhhhcCCCCCEEECCCCCCcccccc--c-ccChHHHhcCCCCCE
Confidence 76552 111121 257788888888876 443 233455788888888876 432 3 455667788899999
Q ss_pred eccccccccCCCCCccc-ccCCCCCCEEEecCCCCcCcc
Q 003957 710 VSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSKNRN 747 (784)
Q Consensus 710 L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~~~ 747 (784)
|+|++|... .+|. +. ++|+.|+|++|+.....
T Consensus 811 L~Ls~N~L~----~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 811 LQIGSNDIR----KVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp EECCSSCCC----BCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred EECCCCCCC----ccCHhhc--CCCCEEECCCCCCCccC
Confidence 999988773 4676 44 68999999999865443
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=212.02 Aligned_cols=302 Identities=16% Similarity=0.140 Sum_probs=199.5
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEec
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLS 420 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls 420 (784)
.+++|++|+++++.+.. ++. +..+++|++|++++|....... ...+++|+.|+++
T Consensus 42 ~l~~L~~L~l~~~~i~~--------------------~~~-~~~~~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~L~ 96 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS--------------------IQG-IEYLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIG 96 (347)
T ss_dssp HHTTCSEEECCSSCCCC--------------------CTT-GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECC
T ss_pred hcccccEEEEeCCcccc--------------------chh-hhhcCCccEEEccCCccccchh----hhcCCcCCEEEcc
Confidence 45788888888887765 222 3668889999998885432111 3788889999998
Q ss_pred CCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhc
Q 003957 421 GTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGR 499 (784)
Q Consensus 421 ~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 499 (784)
+|.+++.. .+. .++|++|++++|.++.... +..+++|++|++++|..+.... .+..
T Consensus 97 ~n~i~~~~--~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~------------------~~~~ 153 (347)
T 4fmz_A 97 TNKITDIS--ALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLS------------------PLSN 153 (347)
T ss_dssp SSCCCCCG--GGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCG------------------GGTT
T ss_pred CCcccCch--HHcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCccccc------------------chhh
Confidence 88777642 344 5788888888887765433 4678888888888875544321 2344
Q ss_pred CCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCc
Q 003957 500 TRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQ 579 (784)
Q Consensus 500 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~ 579 (784)
+++|++|++ +++....... +. .+++|++|+++.+.+++... +..+++|+
T Consensus 154 l~~L~~L~l------------------------~~~~~~~~~~---~~-~l~~L~~L~l~~n~l~~~~~---~~~l~~L~ 202 (347)
T 4fmz_A 154 MTGLNYLTV------------------------TESKVKDVTP---IA-NLTDLYSLSLNYNQIEDISP---LASLTSLH 202 (347)
T ss_dssp CTTCCEEEC------------------------CSSCCCCCGG---GG-GCTTCSEEECTTSCCCCCGG---GGGCTTCC
T ss_pred CCCCcEEEe------------------------cCCCcCCchh---hc-cCCCCCEEEccCCccccccc---ccCCCccc
Confidence 444555555 4442111111 22 25566666665555554321 55667777
Q ss_pred EEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEE
Q 003957 580 VLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISL 658 (784)
Q Consensus 580 ~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L 658 (784)
.|++++| ..+... ...+++|++|++++| .++.... ...+++|++|++++|....- . ....+++|+.|
T Consensus 203 ~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n--~l~~~~~---~~~l~~L~~L~l~~n~l~~~---~-~~~~l~~L~~L 270 (347)
T 4fmz_A 203 YFTAYVNQITDITP---VANMTRLNSLKIGNN--KITDLSP---LANLSQLTWLEIGTNQISDI---N-AVKDLTKLKML 270 (347)
T ss_dssp EEECCSSCCCCCGG---GGGCTTCCEEECCSS--CCCCCGG---GTTCTTCCEEECCSSCCCCC---G-GGTTCTTCCEE
T ss_pred eeecccCCCCCCch---hhcCCcCCEEEccCC--ccCCCcc---hhcCCCCCEEECCCCccCCC---h-hHhcCCCcCEE
Confidence 7777777 222211 334577888888874 4554332 55678888888888876552 1 23468889999
Q ss_pred eecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCEEEe
Q 003957 659 HLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKI 738 (784)
Q Consensus 659 ~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~i 738 (784)
++++|. ++.. ..+..+++|+.|++++|.+ . ...++.+..+++|+.|++++|+.. .++++..+++|++|++
T Consensus 271 ~l~~n~-l~~~--~~~~~l~~L~~L~L~~n~l--~-~~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~l~~L~~L~l 340 (347)
T 4fmz_A 271 NVGSNQ-ISDI--SVLNNLSQLNSLFLNNNQL--G-NEDMEVIGGLTNLTTLFLSQNHIT----DIRPLASLSKMDSADF 340 (347)
T ss_dssp ECCSSC-CCCC--GGGGGCTTCSEEECCSSCC--C-GGGHHHHHTCTTCSEEECCSSSCC----CCGGGGGCTTCSEESS
T ss_pred EccCCc-cCCC--hhhcCCCCCCEEECcCCcC--C-CcChhHhhccccCCEEEccCCccc----cccChhhhhccceeeh
Confidence 998886 5443 3466789999999999965 5 566777888999999999998865 3444778889999999
Q ss_pred cCCCC
Q 003957 739 TKCKS 743 (784)
Q Consensus 739 s~C~~ 743 (784)
++|+.
T Consensus 341 ~~N~i 345 (347)
T 4fmz_A 341 ANQVI 345 (347)
T ss_dssp SCC--
T ss_pred hhhcc
Confidence 98874
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-24 Score=254.65 Aligned_cols=347 Identities=13% Similarity=0.087 Sum_probs=213.1
Q ss_pred HHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhh--cCCCccEEEecCCCCCCHHHHHHHHHhCc
Q 003957 335 ISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNT--LASNLQMLHMACCNGVDGMYLLELMCQAR 412 (784)
Q Consensus 335 l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~--~l~~L~~L~L~~c~~l~~~~l~~l~~~~~ 412 (784)
++..+.++++|++|++++|.++...+..- ............+|..+. .+++|++|++++|..... ++..+.+++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~ 273 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEA--WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK--LPTFLKALP 273 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSS--CSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS--CCTTTTTCS
T ss_pred CCHHHhcccCCCEEECcCCcccccccccc--ccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc--ChHHHhcCC
Confidence 44556789999999999998876211000 000000000000455556 788899999988865321 122236788
Q ss_pred cccEEEecCCc-Cch-hhhhhcc-------cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCcccccccccccc
Q 003957 413 KLKSLCLSGTQ-LAD-KALYNFS-------GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGI 483 (784)
Q Consensus 413 ~L~~L~Ls~~~-l~~-~~~~~l~-------~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~ 483 (784)
+|+.|++++|. ++. ..+..+. .++|++|++++|.++.......+..+++|++|+++++.. +
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l-~--------- 343 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL-E--------- 343 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCC-E---------
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcC-c---------
Confidence 88888888887 765 3333333 277888888888776221111346777888888776632 1
Q ss_pred ccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCC-CcEEEeeeec
Q 003957 484 EFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPM-LELVVLYFQV 562 (784)
Q Consensus 484 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~-L~~L~L~~~~ 562 (784)
+.+. .+..++ +|+.|+++++. +. .....+.. +++ |+.|+++.|.
T Consensus 344 -------g~ip-~~~~l~------------------------~L~~L~L~~N~-l~-~lp~~l~~-l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 344 -------GKLP-AFGSEI------------------------KLASLNLAYNQ-IT-EIPANFCG-FTEQVENLSFAHNK 388 (636)
T ss_dssp -------EECC-CCEEEE------------------------EESEEECCSSE-EE-ECCTTSEE-ECTTCCEEECCSSC
T ss_pred -------cchh-hhCCCC------------------------CCCEEECCCCc-cc-cccHhhhh-hcccCcEEEccCCc
Confidence 0111 233334 44445544441 11 00011222 455 7777776666
Q ss_pred cChHHHHHHHhh--CCCCcEEEeccc-CChhHHHHhh------cCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEE
Q 003957 563 MSDSIIINILES--LRRLQVLAICHC-LGDLSISSFK------LPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELS 633 (784)
Q Consensus 563 i~~~~l~~~~~~--l~~L~~L~Ls~c-~~~~~~~~l~------~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~ 633 (784)
++. ++..+.. +++|+.|++++| +....+..+. ..+++|++|+++++ .++... ..++..+++|++|+
T Consensus 389 l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N--~l~~lp-~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 389 LKY--IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN--QISKFP-KELFSTGSPLSSIN 463 (636)
T ss_dssp CSS--CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS--CCCSCC-THHHHTTCCCSEEE
T ss_pred Ccc--cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC--ccCcCC-HHHHccCCCCCEEE
Confidence 652 3333333 348999999999 3333222222 14579999999994 666322 24556789999999
Q ss_pred ecCCCCCChHHHHHHHhc-------CCCCcEEeecCCCCCCHHHHHHhh--CCCCCCEEEcccCCCCCChhHHHHHHhcC
Q 003957 634 LVGCTLLSSDSQLIISQG-------WPGLISLHLEECGDITAYGVTSLF--NCIALEDLLLRHNGPGIPRDFILDAASKM 704 (784)
Q Consensus 634 Ls~c~~~~~~~~~~~~~~-------~~~L~~L~L~~c~~i~~~~~~~l~--~~~~L~~L~L~~n~~gl~~~~~~~~l~~l 704 (784)
+++|.+.. ........ +++|+.|+|++|. ++. .+..+. .+++|+.|++++|.+ ..++..+..+
T Consensus 464 Ls~N~l~~--i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~-lp~~~~~~~l~~L~~L~Ls~N~l----~~ip~~~~~l 535 (636)
T 4eco_A 464 LMGNMLTE--IPKNSLKDENENFKNTYLLTSIDLRFNK-LTK-LSDDFRATTLPYLVGIDLSYNSF----SKFPTQPLNS 535 (636)
T ss_dssp CCSSCCSB--CCSSSSEETTEECTTGGGCCEEECCSSC-CCB-CCGGGSTTTCTTCCEEECCSSCC----SSCCCGGGGC
T ss_pred CCCCCCCC--cCHHHhccccccccccCCccEEECcCCc-CCc-cChhhhhccCCCcCEEECCCCCC----CCcChhhhcC
Confidence 99998763 11111111 2289999999987 552 233444 899999999999977 4477778899
Q ss_pred CCCceeccccccccCC---CCCccc-ccCCCCCCEEEecCCCC
Q 003957 705 PMLRLVSLDLCDASDG---NFEIPD-YADRYSLSTVKITKCKS 743 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~---~~~l~~-~~~~~~L~~L~is~C~~ 743 (784)
++|+.|++++|+...+ .-.+|. +.++++|++|++++|+.
T Consensus 536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 9999999976541110 013576 88999999999999987
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-24 Score=253.98 Aligned_cols=153 Identities=14% Similarity=0.027 Sum_probs=99.4
Q ss_pred CCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhC-------CCCCEEEeeCCCCCHHHHH
Q 003957 289 SPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRC-------VKLQSIIVCDTSFGVYSIR 361 (784)
Q Consensus 289 ~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~-------~~L~~L~Ls~~~i~~~~l~ 361 (784)
++++|++|+|++|...+.. +.....+++|++|++++|..++...++.-+.++ ++|+.|++++|.+..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~i--P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~---- 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQL--PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE---- 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCSC--CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB----
T ss_pred cCCCCCEEECcCCCCCccC--hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc----
Confidence 7899999999998644322 222345889999999997645542344433433 589999998888774
Q ss_pred HhhccCCccCcccccccch--hhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCC-c
Q 003957 362 ALCSEVPYCNSSALCGKRN--FNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSS-L 437 (784)
Q Consensus 362 ~l~~~l~~~~~~~~~~~~~--~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~-L 437 (784)
+|. .+..+++|+.|+|++|... .++ .+..+++|+.|++++|.++. ....+. .++ |
T Consensus 563 ----------------ip~~~~l~~L~~L~~L~Ls~N~l~---~lp-~~~~L~~L~~L~Ls~N~l~~-lp~~l~~l~~~L 621 (876)
T 4ecn_A 563 ----------------FPASASLQKMVKLGLLDCVHNKVR---HLE-AFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQV 621 (876)
T ss_dssp ----------------CCCHHHHTTCTTCCEEECTTSCCC---BCC-CCCTTSEESEEECCSSCCSC-CCTTSCEECTTC
T ss_pred ----------------cCChhhhhcCCCCCEEECCCCCcc---cch-hhcCCCcceEEECcCCcccc-chHHHhhccccC
Confidence 455 5577888888888887652 222 23677888888888887772 223333 455 8
Q ss_pred CEEEecCCccchhhHHHHHhcC--CCccEEeccCC
Q 003957 438 EMLDVSDTMISGAALAYMVHGN--SGLKYLNARGC 470 (784)
Q Consensus 438 ~~L~Ls~~~i~~~~l~~~~~~l--~~L~~L~L~~c 470 (784)
+.|+|++|.++.. ...+... ++|+.|+++++
T Consensus 622 ~~L~Ls~N~L~~l--p~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 622 EGLGFSHNKLKYI--PNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp CEEECCSSCCCSC--CSCCCTTCSSCEEEEECCSS
T ss_pred CEEECcCCCCCcC--chhhhccccCCCCEEECcCC
Confidence 8888888766522 1222222 34777777665
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-23 Score=238.70 Aligned_cols=459 Identities=13% Similarity=0.067 Sum_probs=259.3
Q ss_pred eCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeecC
Q 003957 181 FEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSSS 260 (784)
Q Consensus 181 ~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~~ 260 (784)
+...++++++++.-...+. ...++|++|++++ +.++......+ ..+++|++|+|++|.-..++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~------~~~~~L~~L~Ls~-N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~--------- 92 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPK------DLPPRTKALSLSQ-NSISELRMPDI-SFLSELRVLRLSHNRIRSLD--------- 92 (562)
T ss_dssp ---CCEEECTTSCCCSCCT------TSCTTCCEEECCS-SCCCCCCGGGT-TTCTTCCEEECCSCCCCEEC---------
T ss_pred cCCCcEEEcCCCCCccCCC------CCCCCcCEEECCC-CCccccChhhh-ccCCCccEEECCCCCCCcCC---------
Confidence 3444667776653322211 1236677777777 44443222223 36777777777754321110
Q ss_pred CccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHH
Q 003957 261 SALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIR 340 (784)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~ 340 (784)
+.....+++|++|+|++|. ++.. +.. .+++|++|++++|. ++...++..+.
T Consensus 93 -----------------------~~~~~~l~~L~~L~Ls~N~-l~~l--p~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~ 143 (562)
T 3a79_B 93 -----------------------FHVFLFNQDLEYLDVSHNR-LQNI--SCC--PMASLRHLDLSFND-FDVLPVCKEFG 143 (562)
T ss_dssp -----------------------TTTTTTCTTCCEEECTTSC-CCEE--CSC--CCTTCSEEECCSSC-CSBCCCCGGGG
T ss_pred -----------------------HHHhCCCCCCCEEECCCCc-CCcc--Ccc--ccccCCEEECCCCC-ccccCchHhhc
Confidence 1113456777777777764 3321 111 46777777777753 22222223345
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCC--ccEEEecCCCCC-CHHHHHHHHHhCcccc--
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASN--LQMLHMACCNGV-DGMYLLELMCQARKLK-- 415 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~--L~~L~L~~c~~l-~~~~l~~l~~~~~~L~-- 415 (784)
++++|+.|++++|.+....+ ..+++ |+.|++++|... +.... ...+.++
T Consensus 144 ~l~~L~~L~L~~n~l~~~~~----------------------~~l~~L~L~~L~L~~n~l~~~~~~~----~~l~~l~~~ 197 (562)
T 3a79_B 144 NLTKLTFLGLSAAKFRQLDL----------------------LPVAHLHLSCILLDLVSYHIKGGET----ESLQIPNTT 197 (562)
T ss_dssp GCTTCCEEEEECSBCCTTTT----------------------GGGTTSCEEEEEEEESSCCCCSSSC----CEEEECCEE
T ss_pred ccCcccEEecCCCccccCch----------------------hhhhhceeeEEEeecccccccccCc----ccccccCcc
Confidence 67788888888877765222 22333 378887776440 00000 1112211
Q ss_pred --EEEecCCcCchhhhhh-cc-cCCcCEEEecCCccch---hhHHHHHhcCCCccEEeccCCCccccccccccccccCCC
Q 003957 416 --SLCLSGTQLADKALYN-FS-GSSLEMLDVSDTMISG---AALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSY 488 (784)
Q Consensus 416 --~L~Ls~~~l~~~~~~~-l~-~~~L~~L~Ls~~~i~~---~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~ 488 (784)
.+++++|.+....... +. .++|+.|++++|...- .+....+.++++|+.|.+.++. +.+..+
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~-l~~~~~---------- 266 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE-TTWKCS---------- 266 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE-ECHHHH----------
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc-CcHHHH----------
Confidence 3455555443322111 11 3577777777764211 1112233567777777776542 221111
Q ss_pred CchhhHHhhhcCCCccEEEec-cccC-cccHhhh---hhhcCcccEEEecCCC-CCChHHHHHhhccCCCCcEEEeeeec
Q 003957 489 PCADLFAELGRTRKLEEIVLG-WGFS-FLSLEVL---KPAIKLLHSITVGLGG-SLGEDALRLLPTTCPMLELVVLYFQV 562 (784)
Q Consensus 489 ~~~~~~~~l~~l~~L~~L~L~-~~~~-~~~~~~~---~~~l~~L~~L~L~~~~-~l~~~~l~~l~~~~~~L~~L~L~~~~ 562 (784)
..++..+ ..++|++|+++ +.+. .++...+ .+.+..|+.+++..+. .+++..+..+.. .++|++|+++.+.
T Consensus 267 --~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~-~~~L~~L~l~~n~ 342 (562)
T 3a79_B 267 --VKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA-EMNIKMLSISDTP 342 (562)
T ss_dssp --HHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH-TCCCSEEEEESSC
T ss_pred --HHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhc-cCcceEEEccCCC
Confidence 1111111 23477777773 3333 1111110 1334444444554442 233333333322 3579999998777
Q ss_pred cChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChH-HHHHHHhcCCCCcEEEecCCCCC
Q 003957 563 MSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNN-DLVILTQNCSELVELSLVGCTLL 640 (784)
Q Consensus 563 i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~-~l~~l~~~~~~L~~L~Ls~c~~~ 640 (784)
+..... ...+++|++|++++| +.+..+.. ...+++|++|++++ +.++.. .+...+.++++|++|++++|...
T Consensus 343 ~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~--N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 343 FIHMVC---PPSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQR--NGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp CCCCCC---CSSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCS--SCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred cccccC---ccCCCCceEEECCCCccccchhhh-hcccCCCCEEECCC--CCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 765321 256789999999998 34323333 34668999999999 467653 34445668899999999999875
Q ss_pred ChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCC-CCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccC
Q 003957 641 SSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNC-IALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASD 719 (784)
Q Consensus 641 ~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~-~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~ 719 (784)
.... .....++++|+.|++++|. ++...+. .+ ++|+.|++++|.+ ..++..+..+++|+.|++++|...
T Consensus 417 ~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~---~l~~~L~~L~L~~N~l----~~ip~~~~~l~~L~~L~L~~N~l~- 486 (562)
T 3a79_B 417 SHAY-DRTCAWAESILVLNLSSNM-LTGSVFR---CLPPKVKVLDLHNNRI----MSIPKDVTHLQALQELNVASNQLK- 486 (562)
T ss_dssp SCCS-SCCCCCCTTCCEEECCSSC-CCGGGGS---SCCTTCSEEECCSSCC----CCCCTTTTSSCCCSEEECCSSCCC-
T ss_pred CccC-hhhhcCcccCCEEECCCCC-CCcchhh---hhcCcCCEEECCCCcC----cccChhhcCCCCCCEEECCCCCCC-
Confidence 4111 1123457999999999987 6543222 33 6999999999977 556666668999999999998776
Q ss_pred CCCCccc--ccCCCCCCEEEecCCCCcC
Q 003957 720 GNFEIPD--YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 720 ~~~~l~~--~~~~~~L~~L~is~C~~~~ 745 (784)
.+|. +..+++|+.|++++|+-..
T Consensus 487 ---~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 487 ---SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp ---CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred ---CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 4565 7889999999999998553
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-22 Score=222.07 Aligned_cols=353 Identities=15% Similarity=0.073 Sum_probs=246.8
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT 422 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~ 422 (784)
++|++|++++|.++.. .|..+..+++|++|++++|........ ..+..+++|+.|++++|
T Consensus 30 ~~l~~L~Ls~n~i~~~-------------------~~~~~~~l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-------------------NETSFSRLQDLQFLKVEQQTPGLVIRN-NTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TTCCEEECCSSCCCEE-------------------CTTTTSSCTTCCEEECCCCSTTCEECT-TTTTTCTTCCEEECTTC
T ss_pred CccCEEEecCCccCcC-------------------ChhHhccCccccEEECcCCcccceECc-ccccccccCCEEeCCCC
Confidence 5678888888877651 234457899999999999865321111 12367899999999999
Q ss_pred cCchhhhhhcc-cCCcCEEEecCCccchhhHHH-HHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcC
Q 003957 423 QLADKALYNFS-GSSLEMLDVSDTMISGAALAY-MVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRT 500 (784)
Q Consensus 423 ~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~-~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 500 (784)
.++......|. .++|++|++++|.+++..+.. .+..+++|++|+++++. ++..... ..+..+
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---------------~~~~~l 153 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPA---------------SFFLNM 153 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCC---------------GGGGGC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcc---------------cccCCC
Confidence 98877766666 689999999999987654432 24688999999998874 3321100 126678
Q ss_pred CCccEEEec-cccCcccHhhhhhhc--CcccEEEecCCCCC--ChH-----HHHHhhccCCCCcEEEeeeeccChHHHHH
Q 003957 501 RKLEEIVLG-WGFSFLSLEVLKPAI--KLLHSITVGLGGSL--GED-----ALRLLPTTCPMLELVVLYFQVMSDSIIIN 570 (784)
Q Consensus 501 ~~L~~L~L~-~~~~~~~~~~~~~~l--~~L~~L~L~~~~~l--~~~-----~l~~l~~~~~~L~~L~L~~~~i~~~~l~~ 570 (784)
++|++|+++ +.+....... +..+ .+|+.|+++++... ... ....+ ..+++|++|+++.+.+++.....
T Consensus 154 ~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 154 RRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP-FKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp TTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT-TTTCEEEEEECTTSCCCHHHHHH
T ss_pred CcccEEeCCCCcccccChhh-hhccccccccccccccCcccccchhhccccccccc-cccceeeeEecCCCcccccchhh
Confidence 899999994 4454443332 2233 57899999987321 111 11111 12578999999999998876555
Q ss_pred HHhh--CCCCcEEEecccCC-hh----------HHHHh-hcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecC
Q 003957 571 ILES--LRRLQVLAICHCLG-DL----------SISSF-KLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVG 636 (784)
Q Consensus 571 ~~~~--l~~L~~L~Ls~c~~-~~----------~~~~l-~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~ 636 (784)
+... .++|+.|++++|.. .. ....+ ....++|++|+++++ .++... ...+..+++|++|++++
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~-~~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS--KIFALL-KSVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS--CCCEEC-TTTTTTCTTCCEEECTT
T ss_pred hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc--cccccc-hhhcccCCCCCEEECCC
Confidence 4443 37999999998721 10 00011 112368999999995 565432 23346789999999999
Q ss_pred CCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccc
Q 003957 637 CTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCD 716 (784)
Q Consensus 637 c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~ 716 (784)
|.+.... .....++++|+.|+|++|. ++...+..+.++++|+.|++++|.+ . ...+..+..+++|++|++++|.
T Consensus 309 n~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l--~-~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 309 NEINKID--DNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHI--R-ALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp SCCCEEC--TTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSSCC--C-EECTTTTTTCTTCCEEECCSSC
T ss_pred CcccccC--hhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCCcc--c-ccChhhccccccccEEECCCCc
Confidence 9876421 1123468999999999987 6666566777899999999999976 4 4456778899999999999987
Q ss_pred ccCCCCCccc--ccCCCCCCEEEecCCCCcCc
Q 003957 717 ASDGNFEIPD--YADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 717 ~~~~~~~l~~--~~~~~~L~~L~is~C~~~~~ 746 (784)
.. .+|. +..+++|++|++++|+....
T Consensus 383 l~----~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 383 LK----SVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CS----CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cc----cCCHhHhccCCcccEEEccCCCcccC
Confidence 66 4455 78999999999999986544
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=216.20 Aligned_cols=339 Identities=17% Similarity=0.121 Sum_probs=244.3
Q ss_pred CCCCCeEecCCCCccCHHHHHHHHHh---CCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEE
Q 003957 316 CVSLGYINIKGCVSVTDVCISNLIRR---CVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLH 392 (784)
Q Consensus 316 ~~~L~~L~L~~c~~l~~~~l~~l~~~---~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~ 392 (784)
++++++|++.++.. + . +.. +++|++|++++|.+.. ++. +..+++|++|+
T Consensus 45 l~~l~~L~l~~~~i-~-----~-l~~~~~l~~L~~L~Ls~n~l~~--------------------~~~-~~~l~~L~~L~ 96 (466)
T 1o6v_A 45 LDQVTTLQADRLGI-K-----S-IDGVEYLNNLTQINFSNNQLTD--------------------ITP-LKNLTKLVDIL 96 (466)
T ss_dssp HHTCCEEECCSSCC-C-----C-CTTGGGCTTCCEEECCSSCCCC--------------------CGG-GTTCTTCCEEE
T ss_pred hccccEEecCCCCC-c-----c-CcchhhhcCCCEEECCCCccCC--------------------chh-hhccccCCEEE
Confidence 34788888877532 1 1 222 4788888888887765 333 47788889999
Q ss_pred ecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCC
Q 003957 393 MACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCK 471 (784)
Q Consensus 393 L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~ 471 (784)
+++|....... ...+++|+.|++++|.+++... +. .++|++|++++|.++... .+..+++|++|.+.+.
T Consensus 97 l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~~- 166 (466)
T 1o6v_A 97 MNNNQIADITP----LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFGNQ- 166 (466)
T ss_dssp CCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEEEES-
T ss_pred CCCCccccChh----hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh---hhccCCcccEeecCCc-
Confidence 98886533222 3778888999998887776543 33 588899999888766543 1467888888888532
Q ss_pred ccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccC
Q 003957 472 NLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTC 550 (784)
Q Consensus 472 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~ 550 (784)
+... ..+..+++|++|+++ +.+.... .+..+++|+.|+++++. +.+.. .++ .+
T Consensus 167 -~~~~------------------~~~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~--~~~-~l 220 (466)
T 1o6v_A 167 -VTDL------------------KPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQ-ISDIT--PLG-IL 220 (466)
T ss_dssp -CCCC------------------GGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSC-CCCCG--GGG-GC
T ss_pred -ccCc------------------hhhccCCCCCEEECcCCcCCCCh---hhccCCCCCEEEecCCc-ccccc--ccc-cc
Confidence 2110 136778999999994 4444432 36678899999999884 32211 133 37
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCC
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSEL 629 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L 629 (784)
++|+.|+++.+.+++.+ .+..+++|+.|++++|. .+... ...+++|++|++++| .++.... ...+++|
T Consensus 221 ~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n--~l~~~~~---~~~l~~L 289 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGAN--QISNISP---LAGLTAL 289 (466)
T ss_dssp TTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSS--CCCCCGG---GTTCTTC
T ss_pred CCCCEEECCCCCcccch---hhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCC--ccCcccc---ccCCCcc
Confidence 89999999888887642 36789999999999993 32221 446699999999995 5654332 5678999
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCce
Q 003957 630 VELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRL 709 (784)
Q Consensus 630 ~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~ 709 (784)
++|++++|....... ...+++|+.|++++|. ++...+ +..+++|+.|++++|.+ . .+ ..+..+++|+.
T Consensus 290 ~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~l--~--~~-~~l~~l~~L~~ 357 (466)
T 1o6v_A 290 TNLELNENQLEDISP----ISNLKNLTYLTLYFNN-ISDISP--VSSLTKLQRLFFYNNKV--S--DV-SSLANLTNINW 357 (466)
T ss_dssp SEEECCSSCCSCCGG----GGGCTTCSEEECCSSC-CSCCGG--GGGCTTCCEEECCSSCC--C--CC-GGGTTCTTCCE
T ss_pred CeEEcCCCcccCchh----hcCCCCCCEEECcCCc-CCCchh--hccCccCCEeECCCCcc--C--Cc-hhhccCCCCCE
Confidence 999999998766322 3579999999999997 544332 56899999999999976 3 22 45788999999
Q ss_pred eccccccccCCCCCcccccCCCCCCEEEecCCCCcC
Q 003957 710 VSLDLCDASDGNFEIPDYADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 710 L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~~~ 745 (784)
|++++|+.. +.+++..+++|+.|++++|+..+
T Consensus 358 L~l~~n~l~----~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 358 LSAGHNQIS----DLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSSCCC----BCGGGTTCTTCCEEECCCEEEEC
T ss_pred EeCCCCccC----ccchhhcCCCCCEEeccCCcccC
Confidence 999998776 33448889999999999997544
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-22 Score=237.16 Aligned_cols=467 Identities=14% Similarity=0.047 Sum_probs=245.5
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeec
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSS 259 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~ 259 (784)
.+++|++|+|++|.-...+. ..+..+++|++|++++ +.++.... ..+..+++|++|+|+.+....++..
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~---~~f~~L~~L~~L~Ls~-N~l~~l~~-~~f~~L~~L~~L~Ls~N~l~~l~~~------ 142 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIED---GAYQSLSHLSTLILTG-NPIQSLAL-GAFSGLSSLQKLVAVETNLASLENF------ 142 (635)
T ss_dssp TCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEECTT-CCCCEECG-GGGTTCTTCCEEECTTSCCCCSTTC------
T ss_pred CCCCCCEEECCCCcCCCcCh---hHhcCCCCCCEEEccC-CcCCCCCH-HHhcCCCCCCEEECCCCcCCCCChh------
Confidence 35667777777764221100 1134567777777777 34443222 2233677777777775543222211
Q ss_pred CCccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCc--cCHHHHHH
Q 003957 260 SSALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVS--VTDVCISN 337 (784)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~--l~~~~l~~ 337 (784)
...++++|++|+|++|.. +..........+++|++|+++++.. +....+..
T Consensus 143 --------------------------~~~~L~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 143 --------------------------PIGHLKTLKELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp --------------------------CCTTCTTCCEEECCSSCC-CCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred --------------------------hhhcCcccCeeccccCcc-ccCCCchhhccchhhhhhcccCccccccccccccc
Confidence 134567777777777642 2211222233466777777776532 11222222
Q ss_pred HHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEE
Q 003957 338 LIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSL 417 (784)
Q Consensus 338 l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L 417 (784)
+.........++++.+.+.. ++........++.+++.++.. ...........++.++..
T Consensus 196 L~~l~~~~~~~~ls~n~l~~--------------------i~~~~~~~~~~~~l~l~~n~~-~~~~~~~~~~~l~~l~~~ 254 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNF--------------------IQPGAFKEIRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVH 254 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCE--------------------ECTTTTTTCEEEEEEEESCCS-SHHHHHHHHHTTTTCEEE
T ss_pred hhhhhhhhhhhhcccCcccc--------------------cCcccccchhhhhhhhhcccc-cccccchhhcCCcccccc
Confidence 22222334456666665543 111112233445556555432 122222233455555544
Q ss_pred EecCCc------Cchhhh---------------------------hhcc-cCCcCEEEecCCccchhhHHHHHhcCCCcc
Q 003957 418 CLSGTQ------LADKAL---------------------------YNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLK 463 (784)
Q Consensus 418 ~Ls~~~------l~~~~~---------------------------~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~ 463 (784)
.+.... +..... ..+. ..+++.+++.++.+..... .....+|+
T Consensus 255 ~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~~~~~L~ 331 (635)
T 4g8a_A 255 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQ 331 (635)
T ss_dssp EEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG---GGSCCCCS
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc---cccchhhh
Confidence 443211 100000 0111 2355555555553322111 13445666
Q ss_pred EEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEecc-ccCcccHhhhhhhcCcccEEEecCCCCCChHH
Q 003957 464 YLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGW-GFSFLSLEVLKPAIKLLHSITVGLGGSLGEDA 542 (784)
Q Consensus 464 ~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 542 (784)
.|++.++.. ... ....+..|+.+.+.. ...... ....+++|+.++++.+.......
T Consensus 332 ~L~l~~~~~-~~~-------------------~~~~l~~L~~l~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~ 388 (635)
T 4g8a_A 332 HLELVNCKF-GQF-------------------PTLKLKSLKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNGLSFKGC 388 (635)
T ss_dssp EEEEESCEE-SSC-------------------CCCBCTTCCEEEEESCCSCCBC---CCCBCTTCCEEECCSSCCBEEEE
T ss_pred hhhcccccc-cCc-------------------CcccchhhhhcccccccCCCCc---ccccccccccchhhccccccccc
Confidence 666655421 110 001234556666522 111110 11235677777777663211000
Q ss_pred HHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHH
Q 003957 543 LRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVI 621 (784)
Q Consensus 543 l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~ 621 (784)
.........+|+.+++..+.+.. ....+..+++|+.+++..+ ............+++++.++++.+ .+... ...
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n--~l~~~-~~~ 463 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--HTRVA-FNG 463 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEE--ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS--CCEEC-CTT
T ss_pred cccchhhhhhhhhhhcccccccc--ccccccccccccchhhhhcccccccccccccccccccccccccc--ccccc-ccc
Confidence 00011135667887775443322 1122456778888888776 222222223345678888888884 34321 122
Q ss_pred HHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHH
Q 003957 622 LTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAA 701 (784)
Q Consensus 622 l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l 701 (784)
....++.|+.|++++|....... .....++++|+.|+|++|+ ++...+..+.++++|++|+|++|.+ . ...+..+
T Consensus 464 ~~~~~~~L~~L~Ls~N~~~~~~~-~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~N~l--~-~l~~~~~ 538 (635)
T 4g8a_A 464 IFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNF--F-SLDTFPY 538 (635)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCC--C-BCCCGGG
T ss_pred ccccchhhhhhhhhhcccccccC-chhhhhccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCCCcC--C-CCChhHH
Confidence 34567899999999987543211 1123468899999999986 7666566677899999999999976 4 4445568
Q ss_pred hcCCCCceeccccccccCCCCCccc-ccCC-CCCCEEEecCCCCc
Q 003957 702 SKMPMLRLVSLDLCDASDGNFEIPD-YADR-YSLSTVKITKCKSK 744 (784)
Q Consensus 702 ~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~-~~L~~L~is~C~~~ 744 (784)
.++++|+.|+|++|... +. .|. +..+ ++|++|++++|+-.
T Consensus 539 ~~l~~L~~L~Ls~N~l~-~~--~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 539 KCLNSLQVLDYSLNHIM-TS--KKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTCTTCCEEECTTSCCC-BC--CSSCTTCCCTTCCEEECTTCCBC
T ss_pred hCCCCCCEEECCCCcCC-CC--CHHHHHhhhCcCCEEEeeCCCCc
Confidence 88999999999998776 21 233 6666 68999999987743
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-22 Score=235.94 Aligned_cols=422 Identities=14% Similarity=0.003 Sum_probs=231.0
Q ss_pred CCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccC
Q 003957 288 PSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEV 367 (784)
Q Consensus 288 ~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l 367 (784)
..+++|++|+|++|. ++.... ....++++|++|++++|.. +... ...+.++++|+.|++++|.+...
T Consensus 97 ~~L~~L~~L~Ls~N~-l~~l~~-~~f~~L~~L~~L~Ls~N~l-~~l~-~~~~~~L~~L~~L~Ls~N~l~~~--------- 163 (635)
T 4g8a_A 97 QSLSHLSTLILTGNP-IQSLAL-GAFSGLSSLQKLVAVETNL-ASLE-NFPIGHLKTLKELNVAHNLIQSF--------- 163 (635)
T ss_dssp TTCTTCCEEECTTCC-CCEECG-GGGTTCTTCCEEECTTSCC-CCST-TCCCTTCTTCCEEECCSSCCCCC---------
T ss_pred cCCCCCCEEEccCCc-CCCCCH-HHhcCCCCCCEEECCCCcC-CCCC-hhhhhcCcccCeeccccCccccC---------
Confidence 345566666666553 222111 1122355666666666432 1110 01134677888888888876541
Q ss_pred CccCcccccccchhhhcCCCccEEEecCCCC--CCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCC
Q 003957 368 PYCNSSALCGKRNFNTLASNLQMLHMACCNG--VDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDT 445 (784)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~ 445 (784)
..|..+..+++|++|++++|.. +....+..+.........++++.+.++......+....++.+++.++
T Consensus 164 ---------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n 234 (635)
T 4g8a_A 164 ---------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 234 (635)
T ss_dssp ---------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred ---------CCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcc
Confidence 1344557788888888888754 22333433422333455788888877766655555667788888888
Q ss_pred ccchhhHHHHHhcCCCccEEeccCCCc-----cccccccccc-----------cccCCCCchhhHHhhhcCCCccEEEec
Q 003957 446 MISGAALAYMVHGNSGLKYLNARGCKN-----LFQQESNGRG-----------IEFSSYPCADLFAELGRTRKLEEIVLG 509 (784)
Q Consensus 446 ~i~~~~l~~~~~~l~~L~~L~L~~c~~-----l~~~~~~~~~-----------~~~~~~~~~~~~~~l~~l~~L~~L~L~ 509 (784)
..........+.+++.++...+..... +......... ..............+.....++.+.+.
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 314 (635)
T 4g8a_A 235 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLV 314 (635)
T ss_dssp CSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEE
T ss_pred cccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccc
Confidence 666555555566777777665532111 1100000000 000000000111122223334444441
Q ss_pred -cccCcccHhhhhhhcCcccEEEecCCCC--CChHHHHH---------------hhccCCCCcEEEeeeeccChHH-HHH
Q 003957 510 -WGFSFLSLEVLKPAIKLLHSITVGLGGS--LGEDALRL---------------LPTTCPMLELVVLYFQVMSDSI-IIN 570 (784)
Q Consensus 510 -~~~~~~~~~~~~~~l~~L~~L~L~~~~~--l~~~~l~~---------------l~~~~~~L~~L~L~~~~i~~~~-l~~ 570 (784)
....... -+....+|+.|++.++.. +....+.. -...+++|+.|+++.+.+...+ ...
T Consensus 315 ~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 391 (635)
T 4g8a_A 315 SVTIERVK---DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 391 (635)
T ss_dssp SCEEEECG---GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCH
T ss_pred cccccccc---ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccccc
Confidence 1111110 012233444554444310 00000000 0012566777777655543221 122
Q ss_pred HHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHh
Q 003957 571 ILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQ 650 (784)
Q Consensus 571 ~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~ 650 (784)
....+.+|+.+++..+....... ....+++|+.+++.++ + .........+..+++++.+++++|..... ......
T Consensus 392 ~~~~~~~L~~L~~~~~~~~~~~~-~~~~l~~L~~l~l~~~-~-~~~~~~~~~~~~l~~l~~l~ls~n~l~~~--~~~~~~ 466 (635)
T 4g8a_A 392 SDFGTISLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHS-N-LKQMSEFSVFLSLRNLIYLDISHTHTRVA--FNGIFN 466 (635)
T ss_dssp HHHSCSCCCEEECCSCSEEEECS-CCTTCTTCCEEECTTS-E-EESTTSSCTTTTCTTCCEEECTTSCCEEC--CTTTTT
T ss_pred chhhhhhhhhhhccccccccccc-cccccccccchhhhhc-c-ccccccccccccccccccccccccccccc--cccccc
Confidence 23456677777777662111111 1234578888888775 2 22111122345678999999999876431 122335
Q ss_pred cCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--cc
Q 003957 651 GWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YA 728 (784)
Q Consensus 651 ~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~ 728 (784)
+++.|+.|++++|.......+..+..+++|++|+|++|.+ . ...+..++++++|++|+|++|... .++. +.
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L--~-~l~~~~f~~l~~L~~L~Ls~N~l~----~l~~~~~~ 539 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL--E-QLSPTAFNSLSSLQVLNMSHNNFF----SLDTFPYK 539 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC--C-EECTTTTTTCTTCCEEECTTSCCC----BCCCGGGT
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCcc--C-CcChHHHcCCCCCCEEECCCCcCC----CCChhHHh
Confidence 6899999999998744433334566899999999999976 5 555677899999999999998765 3444 88
Q ss_pred CCCCCCEEEecCCCCcCc
Q 003957 729 DRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 729 ~~~~L~~L~is~C~~~~~ 746 (784)
.+++|++|++++|+....
T Consensus 540 ~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 540 CLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp TCTTCCEEECTTSCCCBC
T ss_pred CCCCCCEEECCCCcCCCC
Confidence 999999999999986443
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=201.59 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=91.3
Q ss_pred CCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCC
Q 003957 550 CPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSE 628 (784)
Q Consensus 550 ~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~ 628 (784)
+++|+.|+++.+.+++... +..+++|++|++++| ..+... ...+++|++|++++| .++... .+..+++
T Consensus 198 l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n--~l~~~~---~~~~l~~ 266 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTN--QISDIN---AVKDLTK 266 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSS--CCCCCG---GGTTCTT
T ss_pred CCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCC--ccCCCh---hHhcCCC
Confidence 4455555555554444321 455666666666666 222111 334567777777774 454421 2446778
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCc
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLR 708 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~ 708 (784)
|++|++++|....- . ....+++|+.|++++|. ++...+..+.++++|+.|++++|.+ . .+.. +..+++|+
T Consensus 267 L~~L~l~~n~l~~~---~-~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l--~--~~~~-~~~l~~L~ 336 (347)
T 4fmz_A 267 LKMLNVGSNQISDI---S-VLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNHI--T--DIRP-LASLSKMD 336 (347)
T ss_dssp CCEEECCSSCCCCC---G-GGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSSC--C--CCGG-GGGCTTCS
T ss_pred cCEEEccCCccCCC---h-hhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCcc--c--cccC-hhhhhccc
Confidence 88888888766552 1 23467888888888876 6666677777888888888888865 3 2222 77788888
Q ss_pred eeccccccc
Q 003957 709 LVSLDLCDA 717 (784)
Q Consensus 709 ~L~L~~c~~ 717 (784)
.|++++|+.
T Consensus 337 ~L~l~~N~i 345 (347)
T 4fmz_A 337 SADFANQVI 345 (347)
T ss_dssp EESSSCC--
T ss_pred eeehhhhcc
Confidence 888888764
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-21 Score=223.78 Aligned_cols=392 Identities=13% Similarity=0.082 Sum_probs=238.4
Q ss_pred CCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhcc
Q 003957 287 GPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSE 366 (784)
Q Consensus 287 ~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~ 366 (784)
...+++|++|+|++|. ++......+ ..+++|++|+++++. ++.. +.. .+++|++|++++|.++...
T Consensus 72 ~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~l--p~~--~l~~L~~L~Ls~N~l~~l~------- 137 (562)
T 3a79_B 72 ISFLSELRVLRLSHNR-IRSLDFHVF-LFNQDLEYLDVSHNR-LQNI--SCC--PMASLRHLDLSFNDFDVLP------- 137 (562)
T ss_dssp TTTCTTCCEEECCSCC-CCEECTTTT-TTCTTCCEEECTTSC-CCEE--CSC--CCTTCSEEECCSSCCSBCC-------
T ss_pred hccCCCccEEECCCCC-CCcCCHHHh-CCCCCCCEEECCCCc-CCcc--Ccc--ccccCCEEECCCCCccccC-------
Confidence 3567888888888874 333222222 347788888888754 3321 111 5778888888888775411
Q ss_pred CCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccc--cEEEecCCcC--chhhhhhcccCC--cCEE
Q 003957 367 VPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKL--KSLCLSGTQL--ADKALYNFSGSS--LEML 440 (784)
Q Consensus 367 l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L--~~L~Ls~~~l--~~~~~~~l~~~~--L~~L 440 (784)
.|..+..+++|++|+++++... ...+ ..+++| +.|++++|.+ +......+..-. .-.+
T Consensus 138 -----------~p~~~~~l~~L~~L~L~~n~l~-~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 138 -----------VCKEFGNLTKLTFLGLSAAKFR-QLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp -----------CCGGGGGCTTCCEEEEECSBCC-TTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred -----------chHhhcccCcccEEecCCCccc-cCch----hhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence 2244577788888888876542 2222 344555 8888888776 444444443211 2244
Q ss_pred EecCCccchhhHHHHHhcCCCccEEeccCCCc-cccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHh
Q 003957 441 DVSDTMISGAALAYMVHGNSGLKYLNARGCKN-LFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLE 518 (784)
Q Consensus 441 ~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~ 518 (784)
++++|.+...........+++|+.++++++.. ... .......+..++.|+.+++. ..++.....
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--------------l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 267 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR--------------LMTFLSELTRGPTLLNVTLQHIETTWKCSV 267 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH--------------HHHHHHHHHSCSSCEEEEEEEEEECHHHHH
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccch--------------HHHHHHHHhccCcceEEEecCCcCcHHHHH
Confidence 66666543322111223567788888766421 000 12234466778888888883 333322222
Q ss_pred hhhh--hcCcccEEEecCCCCCChHHHHHhhccC-----CCCcEEEe---eeecc--ChHHHHHHHhhCCCCcEEEeccc
Q 003957 519 VLKP--AIKLLHSITVGLGGSLGEDALRLLPTTC-----PMLELVVL---YFQVM--SDSIIINILESLRRLQVLAICHC 586 (784)
Q Consensus 519 ~~~~--~l~~L~~L~L~~~~~l~~~~l~~l~~~~-----~~L~~L~L---~~~~i--~~~~l~~~~~~l~~L~~L~Ls~c 586 (784)
...+ ...+|+.|+++++. +.+ .++... ++|+.|.+ ..+.+ .+..+..++. ..+|++|++++|
T Consensus 268 ~~~~~~~~~~L~~L~l~~n~-l~~----~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~-~~~L~~L~l~~n 341 (562)
T 3a79_B 268 KLFQFFWPRPVEYLNIYNLT-ITE----RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA-EMNIKMLSISDT 341 (562)
T ss_dssp HHHHHHTTSSEEEEEEEEEE-ECS----CCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH-TCCCSEEEEESS
T ss_pred HHHHhhhcccccEEEEeccE-eec----cccchhhhcccccchheehhhcccceeecChhhhhhhhc-cCcceEEEccCC
Confidence 2222 23489999998873 211 111111 45666655 33333 2233333333 357999999998
Q ss_pred C-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCC
Q 003957 587 L-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGD 665 (784)
Q Consensus 587 ~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 665 (784)
. .... +...+++|++|+++++ .++.... ..+.++++|++|++++|....-........++++|+.|++++|.
T Consensus 342 ~~~~~~---~~~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~- 414 (562)
T 3a79_B 342 PFIHMV---CPPSPSSFTFLNFTQN--VFTDSVF-QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS- 414 (562)
T ss_dssp CCCCCC---CCSSCCCCCEEECCSS--CCCTTTT-TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-
T ss_pred Cccccc---CccCCCCceEEECCCC--ccccchh-hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-
Confidence 3 2111 1146789999999994 6765222 23457899999999999876532333334578999999999987
Q ss_pred CCH-HHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcC-CCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCC
Q 003957 666 ITA-YGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKM-PMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCK 742 (784)
Q Consensus 666 i~~-~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l-~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~ 742 (784)
++. .....+..+++|+.|++++|.+ . ..+ ...+ ++|+.|++++|... .+|. +..+++|++|++++|+
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l--~-~~~---~~~l~~~L~~L~L~~N~l~----~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNML--T-GSV---FRCLPPKVKVLDLHNNRIM----SIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCC--C-GGG---GSSCCTTCSEEECCSSCCC----CCCTTTTSSCCCSEEECCSSC
T ss_pred CCCccChhhhcCcccCCEEECCCCCC--C-cch---hhhhcCcCCEEECCCCcCc----ccChhhcCCCCCCEEECCCCC
Confidence 543 2223355789999999999975 4 322 3344 69999999998665 5677 6699999999999998
Q ss_pred CcC
Q 003957 743 SKN 745 (784)
Q Consensus 743 ~~~ 745 (784)
...
T Consensus 485 l~~ 487 (562)
T 3a79_B 485 LKS 487 (562)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-20 Score=210.09 Aligned_cols=300 Identities=15% Similarity=0.050 Sum_probs=160.1
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCcc
Q 003957 385 ASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLK 463 (784)
Q Consensus 385 l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~ 463 (784)
.++++.|+|+++..- ..... .+..+++|+.|+|++|.+++.....|. .++|++|+|++|.++..... .+.++++|+
T Consensus 31 ~~~l~~L~L~~n~l~-~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~ 107 (477)
T 2id5_A 31 PTETRLLDLGKNRIK-TLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG-VFTGLSNLT 107 (477)
T ss_dssp CTTCSEEECCSSCCC-EECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT-SSTTCTTCC
T ss_pred CCCCcEEECCCCccc-eECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc-cccCCCCCC
Confidence 468999999987642 21111 236789999999999988877666666 58899999999877654332 235788999
Q ss_pred EEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHH
Q 003957 464 YLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDA 542 (784)
Q Consensus 464 ~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 542 (784)
+|+++++.. .... ...+..+++|++|+++ +.+...... .+..+++|+.|+++++ .++...
T Consensus 108 ~L~Ls~n~i-~~~~----------------~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~ 168 (477)
T 2id5_A 108 KLDISENKI-VILL----------------DYMFQDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKC-NLTSIP 168 (477)
T ss_dssp EEECTTSCC-CEEC----------------TTTTTTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESC-CCSSCC
T ss_pred EEECCCCcc-ccCC----------------hhHccccccCCEEECCCCccceeChh-hccCCCCCCEEECCCC-cCcccC
Confidence 999987632 2211 1144566777777773 334333322 2445666777777666 222211
Q ss_pred HHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHH
Q 003957 543 LRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVI 621 (784)
Q Consensus 543 l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~ 621 (784)
...+. .+++|+.|+++.+.++... ...+..+++|+.|++++|. .+....... ...+|++|++++| .++.... .
T Consensus 169 ~~~l~-~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n--~l~~~~~-~ 242 (477)
T 2id5_A 169 TEALS-HLHGLIVLRLRHLNINAIR-DYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHC--NLTAVPY-L 242 (477)
T ss_dssp HHHHT-TCTTCCEEEEESCCCCEEC-TTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESS--CCCSCCH-H
T ss_pred hhHhc-ccCCCcEEeCCCCcCcEeC-hhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCC--cccccCH-H
Confidence 12222 2556666666655554421 1124455566666666551 111111111 1235666666653 3442221 1
Q ss_pred HHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHH
Q 003957 622 LTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAA 701 (784)
Q Consensus 622 l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l 701 (784)
.+.++++|+.|++++|.+.... .....++++|+.|+|++|. ++...+..+.++++|+.|++++|.+ . ......+
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l--~-~~~~~~~ 316 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIE--GSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQL--T-TLEESVF 316 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEEC--TTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSCC--S-CCCGGGB
T ss_pred HhcCccccCeeECCCCcCCccC--hhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCcC--c-eeCHhHc
Confidence 2334555666666655543211 1111335556666665554 4433333444555566666665543 2 2222334
Q ss_pred hcCCCCceecccccccc
Q 003957 702 SKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 702 ~~l~~L~~L~L~~c~~~ 718 (784)
..+++|+.|++++|+..
T Consensus 317 ~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 317 HSVGNLETLILDSNPLA 333 (477)
T ss_dssp SCGGGCCEEECCSSCEE
T ss_pred CCCcccCEEEccCCCcc
Confidence 45555555655555543
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.4e-20 Score=203.99 Aligned_cols=103 Identities=13% Similarity=0.125 Sum_probs=64.8
Q ss_pred CCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCC
Q 003957 598 PLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNC 677 (784)
Q Consensus 598 ~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~ 677 (784)
.+++|+.|++++| ..+.... ...++|+.|++++| ++|+.|++++|. ++.. .+.++
T Consensus 284 ~l~~L~~L~Ls~n-~~l~~l~-----~~~~~L~~L~l~~~---------------~~L~~L~L~~N~-l~~l---~l~~l 338 (457)
T 3bz5_A 284 GCRKIKELDVTHN-TQLYLLD-----CQAAGITELDLSQN---------------PKLVYLYLNNTE-LTEL---DVSHN 338 (457)
T ss_dssp TCTTCCCCCCTTC-TTCCEEE-----CTTCCCSCCCCTTC---------------TTCCEEECTTCC-CSCC---CCTTC
T ss_pred ccccCCEEECCCC-cccceec-----cCCCcceEechhhc---------------ccCCEEECCCCc-cccc---ccccC
Confidence 4577777777775 3322211 13456666666654 578889988876 5432 26688
Q ss_pred CCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCEEEecCCCC
Q 003957 678 IALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKS 743 (784)
Q Consensus 678 ~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~ 743 (784)
++|+.|++++|.+ + +++.|..|.+..+... +. +.+..|+.++++++..
T Consensus 339 ~~L~~L~l~~N~l--~---------~l~~L~~L~l~~n~l~-g~------~~~~~l~~l~l~~N~l 386 (457)
T 3bz5_A 339 TKLKSLSCVNAHI--Q---------DFSSVGKIPALNNNFE-AE------GQTITMPKETLTNNSL 386 (457)
T ss_dssp TTCSEEECCSSCC--C---------BCTTGGGSSGGGTSEE-EE------EEEEECCCBCCBTTBE
T ss_pred CcCcEEECCCCCC--C---------CccccccccccCCcEE-ec------ceeeecCccccccCcE
Confidence 8999999999865 3 2567777777665443 21 2334667777777763
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-20 Score=209.25 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=0.0
Q ss_pred CCCceeccccccccCCCCCcccccCCCCCCEEEecCCCC
Q 003957 705 PMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKS 743 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~ 743 (784)
++|+.|++++|+.. ++|.++ .+++.|++.+|..
T Consensus 396 ~~L~~L~ls~N~l~----~~~~iP--~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 396 QNLKQLHVETNPLR----EFPDIP--ESVEDLRMNSERV 428 (454)
T ss_dssp ---------------------------------------
T ss_pred CcCCEEECCCCcCC----ccccch--hhHhheeCcCccc
Confidence 66777777776655 222222 4566666666653
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-19 Score=201.69 Aligned_cols=304 Identities=13% Similarity=0.087 Sum_probs=197.9
Q ss_pred CccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCC
Q 003957 411 ARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYP 489 (784)
Q Consensus 411 ~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~ 489 (784)
.++|++|++++|.+++.....|. .++|++|++++|.+........+.++++|++|+++++. ++...
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~------------ 95 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLE------------ 95 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEEC------------
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccC------------
Confidence 37899999999999887776676 68999999999976533222334688999999999874 33221
Q ss_pred chhhHHhhhcCCCccEEEec-cccCcc-cHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHH
Q 003957 490 CADLFAELGRTRKLEEIVLG-WGFSFL-SLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSI 567 (784)
Q Consensus 490 ~~~~~~~l~~l~~L~~L~L~-~~~~~~-~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~ 567 (784)
...+..+++|++|+++ +.+... .....+..+++|+.|+++++. +.......+...+++|++|+++.|.+++..
T Consensus 96 ----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 96 ----TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp ----TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred ----hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccC
Confidence 2256778999999995 444432 233446778999999999983 332211221234789999999887776532
Q ss_pred HHHHHhhC--CCCcEEEecccC-ChhHHH-------HhhcCCCCccEEEccCCCCCCChHHHHHHHh-------------
Q 003957 568 IINILESL--RRLQVLAICHCL-GDLSIS-------SFKLPLPNLRKLKLERVTPWMTNNDLVILTQ------------- 624 (784)
Q Consensus 568 l~~~~~~l--~~L~~L~Ls~c~-~~~~~~-------~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~------------- 624 (784)
... +..+ .+|+.|++++|. .+.... .-...+++|++|+++++ .++......+..
T Consensus 171 ~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 171 EED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN--GFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp TTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS--CCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred hhh-hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC--cccccchhhhhccccccceeeEeec
Confidence 211 2222 344555555441 110000 00112244555555552 343322222211
Q ss_pred -------------------------cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCC
Q 003957 625 -------------------------NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIA 679 (784)
Q Consensus 625 -------------------------~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~ 679 (784)
.+++|+.|++++|..... .......+++|+.|++++|. ++...+..+.++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 324 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL--LKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTH 324 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE--CTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTT
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCcccccc--chhhcccCCCCCEEECCCCc-ccccChhHhcCccc
Confidence 235788888888876542 11223568899999999887 66555556778999
Q ss_pred CCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCc-cc-ccCCCCCCEEEecCCCCcC
Q 003957 680 LEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEI-PD-YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 680 L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l-~~-~~~~~~L~~L~is~C~~~~ 745 (784)
|+.|++++|.+ + ...+..+..+++|++|++++|... .+ |. +..+++|++|++++|....
T Consensus 325 L~~L~Ls~N~l--~-~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 325 LLKLNLSQNFL--G-SIDSRMFENLDKLEVLDLSYNHIR----ALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp CCEEECCSSCC--C-EECGGGGTTCTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCEEECCCCcc--C-CcChhHhcCcccCCEEECCCCccc----ccChhhccccccccEEECCCCcccc
Confidence 99999999965 4 445667888999999999998765 23 44 8889999999999987654
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-19 Score=199.62 Aligned_cols=310 Identities=15% Similarity=0.082 Sum_probs=223.6
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCc
Q 003957 384 LASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGL 462 (784)
Q Consensus 384 ~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L 462 (784)
.+++++.|+++++.. +... ..++..+++|+.|++++|.+++.....|. .++|++|++++|.++...... +.++++|
T Consensus 43 ~l~~l~~l~l~~~~l-~~l~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM-RKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEE-SEEC-THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTC
T ss_pred ccCCceEEEecCCch-hhCC-hhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH-hcCCCCC
Confidence 467899999998753 2111 12347889999999999998877766666 689999999999877654332 3688999
Q ss_pred cEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChH
Q 003957 463 KYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGED 541 (784)
Q Consensus 463 ~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 541 (784)
++|+++++ .++.... ..+..+++|++|+++ +.+...... .+..+++|+.|+++++. ++..
T Consensus 120 ~~L~L~~n-~l~~l~~----------------~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~ 180 (390)
T 3o6n_A 120 TVLVLERN-DLSSLPR----------------GIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNR-LTHV 180 (390)
T ss_dssp CEEECCSS-CCCCCCT----------------TTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSC-CSBC
T ss_pred CEEECCCC-ccCcCCH----------------HHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCc-CCcc
Confidence 99999887 3332211 124668899999994 445544333 45678899999999883 3332
Q ss_pred HHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHH
Q 003957 542 ALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVI 621 (784)
Q Consensus 542 ~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~ 621 (784)
. + ..+++|+.|+++.+.++.. ...++|++|++++|...... ....++|++|+++++ .+++. .
T Consensus 181 ~---~-~~l~~L~~L~l~~n~l~~~------~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n--~l~~~---~ 242 (390)
T 3o6n_A 181 D---L-SLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVVR---GPVNVELTILKLQHN--NLTDT---A 242 (390)
T ss_dssp C---G-GGCTTCSEEECCSSCCSEE------ECCSSCSEEECCSSCCCEEE---CCCCSSCCEEECCSS--CCCCC---G
T ss_pred c---c-ccccccceeeccccccccc------CCCCcceEEECCCCeeeecc---ccccccccEEECCCC--CCccc---H
Confidence 1 2 3478899999988887753 34568999999998321111 123479999999995 57654 2
Q ss_pred HHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHH
Q 003957 622 LTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAA 701 (784)
Q Consensus 622 l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l 701 (784)
.+..+++|++|++++|.+.... .....++++|+.|++++|. ++... ..+..+++|+.|++++|.+ ..++..+
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~l~~L~~L~L~~n~l----~~~~~~~ 314 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNR-LVALN-LYGQPIPTLKVLDLSHNHL----LHVERNQ 314 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECCSSC-CCEEE-CSSSCCTTCCEEECCSSCC----CCCGGGH
T ss_pred HHcCCCCccEEECCCCcCCCcC--hhHccccccCCEEECCCCc-CcccC-cccCCCCCCCEEECCCCcc----eecCccc
Confidence 4567899999999999865421 1223468999999999987 55321 1224689999999999977 4555567
Q ss_pred hcCCCCceeccccccccCCCCCcccccCCCCCCEEEecCCCCcCc
Q 003957 702 SKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 702 ~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~~~~ 746 (784)
..+++|+.|++++|+.. .++ +..+++|++|++++|+....
T Consensus 315 ~~l~~L~~L~L~~N~i~----~~~-~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 315 PQFDRLENLYLDHNSIV----TLK-LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp HHHTTCSEEECCSSCCC----CCC-CCTTCCCSEEECCSSCEEHH
T ss_pred cccCcCCEEECCCCccc----eeC-chhhccCCEEEcCCCCccch
Confidence 78899999999998866 333 66778999999999985443
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-19 Score=197.53 Aligned_cols=141 Identities=16% Similarity=0.099 Sum_probs=72.0
Q ss_pred CCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccC
Q 003957 288 PSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEV 367 (784)
Q Consensus 288 ~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l 367 (784)
..+++|++|++++|. +++. +.+ ..+++|++|++++|. ++..+ +..+++|+.|++++|.++.
T Consensus 39 ~~l~~L~~L~Ls~n~-l~~~--~~l-~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~l~~---------- 99 (457)
T 3bz5_A 39 EQLATLTSLDCHNSS-ITDM--TGI-EKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNKLTN---------- 99 (457)
T ss_dssp HHHTTCCEEECCSSC-CCCC--TTG-GGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSCCSC----------
T ss_pred hHcCCCCEEEccCCC-cccC--hhh-cccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCCCce----------
Confidence 456778888888764 3322 122 346677777776653 22221 3455666666666666554
Q ss_pred CccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCC-c
Q 003957 368 PYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDT-M 446 (784)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~-~ 446 (784)
++ +..+++|++|++++|.... ++ ...+++|+.|++++|.++...+.. .++|++|++++| .
T Consensus 100 ----------~~--~~~l~~L~~L~L~~N~l~~---l~--~~~l~~L~~L~l~~N~l~~l~l~~--l~~L~~L~l~~n~~ 160 (457)
T 3bz5_A 100 ----------LD--VTPLTKLTYLNCDTNKLTK---LD--VSQNPLLTYLNCARNTLTEIDVSH--NTQLTELDCHLNKK 160 (457)
T ss_dssp ----------CC--CTTCTTCCEEECCSSCCSC---CC--CTTCTTCCEEECTTSCCSCCCCTT--CTTCCEEECTTCSC
T ss_pred ----------ee--cCCCCcCCEEECCCCcCCe---ec--CCCCCcCCEEECCCCccceecccc--CCcCCEEECCCCCc
Confidence 11 2455666666666654321 11 245556666666665555432111 345555555555 2
Q ss_pred cchhhHHHHHhcCCCccEEeccCC
Q 003957 447 ISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 447 i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
+.... +..+++|++|+++++
T Consensus 161 ~~~~~----~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 161 ITKLD----VTPQTQLTTLDCSFN 180 (457)
T ss_dssp CCCCC----CTTCTTCCEEECCSS
T ss_pred ccccc----cccCCcCCEEECCCC
Confidence 22221 234455555555544
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-18 Score=180.78 Aligned_cols=254 Identities=19% Similarity=0.189 Sum_probs=162.3
Q ss_pred CccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEe
Q 003957 387 NLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLN 466 (784)
Q Consensus 387 ~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~ 466 (784)
.++.++++++.. .+..+..+ ..++++.|+++++.+++.....+..++|++|++++|.+++.++...+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~-~~~~~~~~--~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNL-HPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBC-CHHHHHHH--HHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccC-CHHHHHhh--hhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 478888887654 33332221 127788888888877665544444678888888888877766666677788888888
Q ss_pred ccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHh
Q 003957 467 ARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLL 546 (784)
Q Consensus 467 L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l 546 (784)
+++|. +++ .....+
T Consensus 125 L~~~~-l~~-----------------------------------------------------------------~~~~~l 138 (336)
T 2ast_B 125 LEGLR-LSD-----------------------------------------------------------------PIVNTL 138 (336)
T ss_dssp CTTCB-CCH-----------------------------------------------------------------HHHHHH
T ss_pred CcCcc-cCH-----------------------------------------------------------------HHHHHH
Confidence 87762 222 223333
Q ss_pred hccCCCCcEEEeeee-ccChHHHHHHHhhCCCCcEEEeccc-C-ChhHHHHhhcCCC-CccEEEccCCCC-CCChHHHHH
Q 003957 547 PTTCPMLELVVLYFQ-VMSDSIIINILESLRRLQVLAICHC-L-GDLSISSFKLPLP-NLRKLKLERVTP-WMTNNDLVI 621 (784)
Q Consensus 547 ~~~~~~L~~L~L~~~-~i~~~~l~~~~~~l~~L~~L~Ls~c-~-~~~~~~~l~~~~~-~L~~L~L~~c~~-~l~~~~l~~ 621 (784)
+. +++|++|+++.+ .+++.++...+.++++|++|++++| . ++..+..+...++ +|++|++++| . .+++.++..
T Consensus 139 ~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~-~~~~~~~~l~~ 216 (336)
T 2ast_B 139 AK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY-RKNLQKSDLST 216 (336)
T ss_dssp TT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC-GGGSCHHHHHH
T ss_pred hc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC-cccCCHHHHHH
Confidence 33 555666666433 5665556666666666666666666 2 3333444444456 7777777775 3 467677777
Q ss_pred HHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHH
Q 003957 622 LTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAA 701 (784)
Q Consensus 622 l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l 701 (784)
...++++|++|++++|..+++.....+ ..+++|+.|++++|..+++.++..+.++++|+.|++++| + +++.+....
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i--~~~~~~~l~ 292 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V--PDGTLQLLK 292 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S--CTTCHHHHH
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c--CHHHHHHHH
Confidence 777788888888888875554444433 457888888888887777777767778888888888888 3 544444443
Q ss_pred hcCCCCceecccccccc
Q 003957 702 SKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 702 ~~l~~L~~L~L~~c~~~ 718 (784)
..++. |++++|...
T Consensus 293 ~~l~~---L~l~~n~l~ 306 (336)
T 2ast_B 293 EALPH---LQINCSHFT 306 (336)
T ss_dssp HHSTT---SEESCCCSC
T ss_pred hhCcc---eEEecccCc
Confidence 33444 446554443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-19 Score=204.40 Aligned_cols=296 Identities=17% Similarity=0.119 Sum_probs=190.4
Q ss_pred ccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCc
Q 003957 412 RKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPC 490 (784)
Q Consensus 412 ~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~ 490 (784)
++++.|++++|.++......|. .++|++|+|++|.++...... +.++++|++|+++++. ++....
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~------------ 97 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSNR-LKLIPL------------ 97 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSC-CCSCCT------------
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh-hhCCccCCEEECCCCc-CCccCc------------
Confidence 5778888888888776666665 578888888888776543333 3577888888887763 332211
Q ss_pred hhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHH
Q 003957 491 ADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIII 569 (784)
Q Consensus 491 ~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~ 569 (784)
..+..+++|++|+++ +.+..... ..+..+++|+.|+++++. +.......+. .+++|++|+++.+.++... .
T Consensus 98 ----~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~-~ 169 (477)
T 2id5_A 98 ----GVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDND-LVYISHRAFS-GLNSLEQLTLEKCNLTSIP-T 169 (477)
T ss_dssp ----TSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTT-CCEECTTSST-TCTTCCEEEEESCCCSSCC-H
T ss_pred ----ccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCCc-cceeChhhcc-CCCCCCEEECCCCcCcccC-h
Confidence 134557788888884 34443322 345667788888888762 2221112222 3677888888877776542 3
Q ss_pred HHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHH
Q 003957 570 NILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIIS 649 (784)
Q Consensus 570 ~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~ 649 (784)
..+.++++|+.|++++|............+++|++|++++| +.+..... ... ...+|++|++++|.+.. ......
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~-~~~-~~~~L~~L~l~~n~l~~--~~~~~~ 244 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW-PYLDTMTP-NCL-YGLNLTSLSITHCNLTA--VPYLAV 244 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC-TTCCEECT-TTT-TTCCCSEEEEESSCCCS--CCHHHH
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC-ccccccCc-ccc-cCccccEEECcCCcccc--cCHHHh
Confidence 44677888888888887322222222345678888888886 33332111 111 23478888888887654 122234
Q ss_pred hcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--c
Q 003957 650 QGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--Y 727 (784)
Q Consensus 650 ~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~ 727 (784)
.++++|+.|+|++|. ++......+.++++|+.|++++|.+ . ...+..+..+++|+.|+|++|... .++. +
T Consensus 245 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~ 316 (477)
T 2id5_A 245 RHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQL--A-VVEPYAFRGLNYLRVLNVSGNQLT----TLEESVF 316 (477)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCC--S-EECTTTBTTCTTCCEEECCSSCCS----CCCGGGB
T ss_pred cCccccCeeECCCCc-CCccChhhccccccCCEEECCCCcc--c-eECHHHhcCcccCCEEECCCCcCc----eeCHhHc
Confidence 568888888888876 5554444556788888888888865 4 444556777888888888887655 3444 6
Q ss_pred cCCCCCCEEEecCCC
Q 003957 728 ADRYSLSTVKITKCK 742 (784)
Q Consensus 728 ~~~~~L~~L~is~C~ 742 (784)
..+++|++|++++|+
T Consensus 317 ~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 317 HSVGNLETLILDSNP 331 (477)
T ss_dssp SCGGGCCEEECCSSC
T ss_pred CCCcccCEEEccCCC
Confidence 778888888888876
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.2e-18 Score=180.41 Aligned_cols=213 Identities=16% Similarity=0.191 Sum_probs=160.5
Q ss_pred cCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc--CChhHHHHhhcCCCC
Q 003957 524 IKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC--LGDLSISSFKLPLPN 601 (784)
Q Consensus 524 l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c--~~~~~~~~l~~~~~~ 601 (784)
+++|++|++++| .+++..+......+++|++|+++.+.+++.... .+..+++|++|++++| .++..+..+...+++
T Consensus 92 ~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 92 PFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred CCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 456677777766 355554555556689999999988788877554 4567999999999998 455556666667799
Q ss_pred ccEEEccCCCCCCChHHHHHHHhcCC-CCcEEEecCCC-CCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCC
Q 003957 602 LRKLKLERVTPWMTNNDLVILTQNCS-ELVELSLVGCT-LLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIA 679 (784)
Q Consensus 602 L~~L~L~~c~~~l~~~~l~~l~~~~~-~L~~L~Ls~c~-~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~ 679 (784)
|++|++++| ..+++.++......++ +|++|++++|. .+++........++++|+.|++++|..+++.++..+..+++
T Consensus 170 L~~L~l~~~-~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 170 LDELNLSWC-FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp CCEEECCCC-TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred CCEEcCCCC-CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 999999996 4788888888888899 99999999997 46655666666679999999999998788888888888999
Q ss_pred CCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCEEEecCCCCcCc
Q 003957 680 LEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 680 L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~~~~ 746 (784)
|+.|++++|. ++.+. ....+..+++|+.|++++| ++.. .+..+. .+|+.|++++|+....
T Consensus 249 L~~L~l~~~~-~~~~~-~~~~l~~~~~L~~L~l~~~--i~~~-~~~~l~--~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 249 LQHLSLSRCY-DIIPE-TLLELGEIPTLKTLQVFGI--VPDG-TLQLLK--EALPHLQINCSHFTTI 308 (336)
T ss_dssp CCEEECTTCT-TCCGG-GGGGGGGCTTCCEEECTTS--SCTT-CHHHHH--HHSTTSEESCCCSCCT
T ss_pred CCEeeCCCCC-CCCHH-HHHHHhcCCCCCEEeccCc--cCHH-HHHHHH--hhCcceEEecccCccc
Confidence 9999999995 34523 3355778999999999998 4222 223222 3466777887765443
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-19 Score=205.84 Aligned_cols=307 Identities=15% Similarity=0.073 Sum_probs=219.6
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCc
Q 003957 384 LASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGL 462 (784)
Q Consensus 384 ~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L 462 (784)
.+.+++.++++++..- .. ...++..+++|+.|++++|.+++.....|. .++|++|+|++|.++...... +.++++|
T Consensus 49 ~l~~l~~l~l~~~~l~-~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEES-EE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTC
T ss_pred cCCCceEEEeeCCCCC-Cc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH-HcCCCCC
Confidence 4678899999887531 11 122347789999999999988877766666 689999999999877654332 3688999
Q ss_pred cEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChH
Q 003957 463 KYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGED 541 (784)
Q Consensus 463 ~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 541 (784)
++|++++|. ++.... ..++.+++|++|+++ +.+...... .+..+++|+.|+++++ .++..
T Consensus 126 ~~L~L~~n~-l~~l~~----------------~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~ 186 (597)
T 3oja_B 126 TVLVLERND-LSSLPR----------------GIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSN-RLTHV 186 (597)
T ss_dssp CEEECCSSC-CCCCCT----------------TTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTS-CCSBC
T ss_pred CEEEeeCCC-CCCCCH----------------HHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCC-CCCCc
Confidence 999998873 332211 124678899999994 445444333 4667889999999988 33332
Q ss_pred HHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHH
Q 003957 542 ALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVI 621 (784)
Q Consensus 542 ~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~ 621 (784)
. ...+++|+.|+++.+.++.. ...++|+.|++++|...... ....++|+.|+++++ .+++. .
T Consensus 187 ~----~~~l~~L~~L~l~~n~l~~l------~~~~~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~n--~l~~~---~ 248 (597)
T 3oja_B 187 D----LSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVVR---GPVNVELTILKLQHN--NLTDT---A 248 (597)
T ss_dssp C----GGGCTTCSEEECCSSCCSEE------ECCTTCSEEECCSSCCCEEE---CSCCSCCCEEECCSS--CCCCC---G
T ss_pred C----hhhhhhhhhhhcccCccccc------cCCchhheeeccCCcccccc---cccCCCCCEEECCCC--CCCCC---h
Confidence 1 23478899999988877752 34568999999998321111 122368999999995 56653 3
Q ss_pred HHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHH
Q 003957 622 LTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAA 701 (784)
Q Consensus 622 l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l 701 (784)
.+..+++|+.|++++|.+.... .....++++|+.|+|++|. ++.. +..+..+++|+.|+|++|.+ ..++..+
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~l-~~~~~~l~~L~~L~Ls~N~l----~~i~~~~ 320 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNR-LVAL-NLYGQPIPTLKVLDLSHNHL----LHVERNQ 320 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECTTSC-CCEE-ECSSSCCTTCCEEECCSSCC----CCCGGGH
T ss_pred hhccCCCCCEEECCCCccCCCC--HHHhcCccCCCEEECCCCC-CCCC-CcccccCCCCcEEECCCCCC----CccCccc
Confidence 4567899999999999875421 1223468999999999987 5432 12224689999999999977 4566667
Q ss_pred hcCCCCceeccccccccCCCCCcccccCCCCCCEEEecCCCC
Q 003957 702 SKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKS 743 (784)
Q Consensus 702 ~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~ 743 (784)
..+++|+.|+|++|+.. .+| +..+++|+.|++++|+.
T Consensus 321 ~~l~~L~~L~L~~N~l~----~~~-~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 321 PQFDRLENLYLDHNSIV----TLK-LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp HHHTTCSEEECCSSCCC----CCC-CCTTCCCSEEECCSSCE
T ss_pred ccCCCCCEEECCCCCCC----CcC-hhhcCCCCEEEeeCCCC
Confidence 88999999999998876 333 66778999999999874
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-18 Score=191.30 Aligned_cols=289 Identities=13% Similarity=0.051 Sum_probs=215.4
Q ss_pred hCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCC
Q 003957 410 QARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSY 488 (784)
Q Consensus 410 ~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~ 488 (784)
.+++++.|+++++.++......|. .++|++|++++|.++...... +..+++|++|+++++. ++...
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~----------- 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNA-IRYLP----------- 109 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSC-CCCCC-----------
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhh-ccCCCCcCEEECCCCC-CCcCC-----------
Confidence 468999999999988776655555 689999999999887654333 3688999999998874 33321
Q ss_pred CchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHH
Q 003957 489 PCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSI 567 (784)
Q Consensus 489 ~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~ 567 (784)
...+..+++|++|+++ +.+...+. ..+..+++|++|+++++. +.......+. .+++|++|+++.+.+++..
T Consensus 110 -----~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~ 181 (390)
T 3o6n_A 110 -----PHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNN-LERIEDDTFQ-ATTSLQNLQLSSNRLTHVD 181 (390)
T ss_dssp -----TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCBCCTTTTS-SCTTCCEEECCSSCCSBCC
T ss_pred -----HHHhcCCCCCCEEECCCCccCcCCH-HHhcCCCCCcEEECCCCc-cCccChhhcc-CCCCCCEEECCCCcCCccc
Confidence 1246678999999994 45554333 245678899999999883 3322112233 3789999999988887753
Q ss_pred HHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHH
Q 003957 568 IINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQL 646 (784)
Q Consensus 568 l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~ 646 (784)
+..+++|+.|++++|. .. + ...++|++|+++++ .++.... ...++|+.|++++|.....
T Consensus 182 ----~~~l~~L~~L~l~~n~l~~-----~-~~~~~L~~L~l~~n--~l~~~~~----~~~~~L~~L~l~~n~l~~~---- 241 (390)
T 3o6n_A 182 ----LSLIPSLFHANVSYNLLST-----L-AIPIAVEELDASHN--SINVVRG----PVNVELTILKLQHNNLTDT---- 241 (390)
T ss_dssp ----GGGCTTCSEEECCSSCCSE-----E-ECCSSCSEEECCSS--CCCEEEC----CCCSSCCEEECCSSCCCCC----
T ss_pred ----cccccccceeecccccccc-----c-CCCCcceEEECCCC--eeeeccc----cccccccEEECCCCCCccc----
Confidence 4668899999999983 21 1 23368999999995 5654321 2357999999999987763
Q ss_pred HHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc
Q 003957 647 IISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD 726 (784)
Q Consensus 647 ~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~ 726 (784)
.....+++|+.|++++|. ++...+..+.++++|+.|++++|.+ ..++..+..+++|+.|++++|... .+|.
T Consensus 242 ~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~l~~L~~L~L~~n~l~----~~~~ 312 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL----VALNLYGQPIPTLKVLDLSHNHLL----HVER 312 (390)
T ss_dssp GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCC----CEEECSSSCCTTCCEEECCSSCCC----CCGG
T ss_pred HHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcC----cccCcccCCCCCCCEEECCCCcce----ecCc
Confidence 133568999999999987 7666566778899999999999976 444445567899999999999766 4566
Q ss_pred -ccCCCCCCEEEecCCCCcCccc
Q 003957 727 -YADRYSLSTVKITKCKSKNRNL 748 (784)
Q Consensus 727 -~~~~~~L~~L~is~C~~~~~~~ 748 (784)
+..+++|++|++++|+.....+
T Consensus 313 ~~~~l~~L~~L~L~~N~i~~~~~ 335 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHNSIVTLKL 335 (390)
T ss_dssp GHHHHTTCSEEECCSSCCCCCCC
T ss_pred cccccCcCCEEECCCCccceeCc
Confidence 7888999999999998755544
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.4e-19 Score=196.16 Aligned_cols=321 Identities=15% Similarity=0.026 Sum_probs=142.8
Q ss_pred CCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCcc
Q 003957 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYC 370 (784)
Q Consensus 291 ~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~ 370 (784)
++|++|++++|.. +. ++ ...++|++|++++|.. +..+ ...++|++|++++|.++.
T Consensus 91 ~~L~~L~l~~n~l-~~--lp---~~~~~L~~L~l~~n~l-~~l~-----~~~~~L~~L~L~~n~l~~------------- 145 (454)
T 1jl5_A 91 PHLESLVASCNSL-TE--LP---ELPQSLKSLLVDNNNL-KALS-----DLPPLLEYLGVSNNQLEK------------- 145 (454)
T ss_dssp TTCSEEECCSSCC-SS--CC---CCCTTCCEEECCSSCC-SCCC-----SCCTTCCEEECCSSCCSS-------------
T ss_pred CCCCEEEccCCcC-Cc--cc---cccCCCcEEECCCCcc-Cccc-----CCCCCCCEEECcCCCCCC-------------
Confidence 4666666666532 21 11 1235666666666422 2110 011466666666665554
Q ss_pred CcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccch
Q 003957 371 NSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISG 449 (784)
Q Consensus 371 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~ 449 (784)
+|. +..+++|++|++++|.... ++ ...++|+.|++++|.++... .+. .++|++|++++|.++.
T Consensus 146 -------lp~-~~~l~~L~~L~l~~N~l~~---lp---~~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 146 -------LPE-LQNSSFLKIIDVDNNSLKK---LP---DLPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp -------CCC-CTTCTTCCEEECCSSCCSC---CC---CCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS
T ss_pred -------Ccc-cCCCCCCCEEECCCCcCcc---cC---CCcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCc
Confidence 232 3556666666666664321 11 12346666666666655422 233 4666666666665543
Q ss_pred hhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCccc
Q 003957 450 AALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLH 528 (784)
Q Consensus 450 ~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~ 528 (784)
.. ...++|++|++++|. ++... .++.+++|++|+++ +.+...+ ...++|+
T Consensus 210 l~-----~~~~~L~~L~l~~n~-l~~lp------------------~~~~l~~L~~L~l~~N~l~~l~-----~~~~~L~ 260 (454)
T 1jl5_A 210 LP-----DLPLSLESIVAGNNI-LEELP------------------ELQNLPFLTTIYADNNLLKTLP-----DLPPSLE 260 (454)
T ss_dssp CC-----CCCTTCCEEECCSSC-CSSCC------------------CCTTCTTCCEEECCSSCCSSCC-----SCCTTCC
T ss_pred CC-----CCcCcccEEECcCCc-CCccc------------------ccCCCCCCCEEECCCCcCCccc-----ccccccC
Confidence 11 122466666666652 22110 23455666666663 3333211 1235677
Q ss_pred EEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEc
Q 003957 529 SITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKL 607 (784)
Q Consensus 529 ~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L 607 (784)
.|+++++. +.. ++..+++|+.|+++.|.+++.. ...++|+.|++++|. .. +....++|++|++
T Consensus 261 ~L~l~~N~-l~~-----l~~~~~~L~~L~ls~N~l~~l~-----~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~L 324 (454)
T 1jl5_A 261 ALNVRDNY-LTD-----LPELPQSLTFLDVSENIFSGLS-----ELPPNLYYLNASSNEIRS-----LCDLPPSLEELNV 324 (454)
T ss_dssp EEECCSSC-CSC-----CCCCCTTCCEEECCSSCCSEES-----CCCTTCCEEECCSSCCSE-----ECCCCTTCCEEEC
T ss_pred EEECCCCc-ccc-----cCcccCcCCEEECcCCccCccc-----CcCCcCCEEECcCCcCCc-----ccCCcCcCCEEEC
Confidence 77777662 221 2333466777777666655410 112467777777762 21 1112246777777
Q ss_pred cCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCH--HHHHHhhC---------
Q 003957 608 ERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITA--YGVTSLFN--------- 676 (784)
Q Consensus 608 ~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~--~~~~~l~~--------- 676 (784)
+++ .++. + ...+++|+.|++++|....- . ..+++|+.|++++|. ++. ..+..+..
T Consensus 325 s~N--~l~~--l---p~~~~~L~~L~L~~N~l~~l---p---~~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~~~~ 390 (454)
T 1jl5_A 325 SNN--KLIE--L---PALPPRLERLIASFNHLAEV---P---ELPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAE 390 (454)
T ss_dssp CSS--CCSC--C---CCCCTTCCEEECCSSCCSCC---C---CCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC----
T ss_pred CCC--cccc--c---cccCCcCCEEECCCCccccc---c---chhhhccEEECCCCC-CCcCCCChHHHHhhhhcccccc
Confidence 773 4542 1 12246777777777765431 1 135677777777765 332 11122222
Q ss_pred ----CCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 677 ----CIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 677 ----~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+++|+.|++++|.+ ..++.. -++|+.|.+.+|...
T Consensus 391 i~~~~~~L~~L~ls~N~l----~~~~~i---P~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 391 VPELPQNLKQLHVETNPL----REFPDI---PESVEDLRMNSERVV 429 (454)
T ss_dssp ----------------------------------------------
T ss_pred cccccCcCCEEECCCCcC----Cccccc---hhhHhheeCcCcccC
Confidence 37899999999976 322111 135777788877654
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.9e-17 Score=176.35 Aligned_cols=159 Identities=18% Similarity=0.097 Sum_probs=81.5
Q ss_pred CCCcEEEeeeeccChHHHH---HHHhhCCCCcEEEeccc-CChhHHHH----hhcCCCCccEEEccCCCCCCChHHHH--
Q 003957 551 PMLELVVLYFQVMSDSIII---NILESLRRLQVLAICHC-LGDLSISS----FKLPLPNLRKLKLERVTPWMTNNDLV-- 620 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~---~~~~~l~~L~~L~Ls~c-~~~~~~~~----l~~~~~~L~~L~L~~c~~~l~~~~l~-- 620 (784)
++|++|+++.|.+++.++. ..+..+++|++|++++| +.+..... ....+++|++|++++| .+++.+..
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSAL 236 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHH
Confidence 3444444444444433333 23334555555555555 23222111 2234466666666663 45543332
Q ss_pred -HHHhcCCCCcEEEecCCCCCChHHHH--HHH--hcCCCCcEEeecCCCCCCHHHHH----Hh-hCCCCCCEEEcccCCC
Q 003957 621 -ILTQNCSELVELSLVGCTLLSSDSQL--IIS--QGWPGLISLHLEECGDITAYGVT----SL-FNCIALEDLLLRHNGP 690 (784)
Q Consensus 621 -~l~~~~~~L~~L~Ls~c~~~~~~~~~--~~~--~~~~~L~~L~L~~c~~i~~~~~~----~l-~~~~~L~~L~L~~n~~ 690 (784)
..+..+++|++|++++|.+....... ... ..+++|+.|+|++|. ++..++. .+ .++++|+.|++++|.+
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 33455677777777777654332221 111 126778888887776 6664322 23 3578888888888865
Q ss_pred CCChhH--HHHHHhcCCCCceecccc
Q 003957 691 GIPRDF--ILDAASKMPMLRLVSLDL 714 (784)
Q Consensus 691 gl~~~~--~~~~l~~l~~L~~L~L~~ 714 (784)
+... +......+++++.+.+..
T Consensus 316 --~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 316 --SEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp --CTTSHHHHHHHHHHHHHTCCEECC
T ss_pred --CcchhHHHHHHHHhhhcCcchhhh
Confidence 3222 233344455566555544
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.1e-18 Score=195.49 Aligned_cols=289 Identities=13% Similarity=0.056 Sum_probs=216.4
Q ss_pred hCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCC
Q 003957 410 QARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSY 488 (784)
Q Consensus 410 ~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~ 488 (784)
.+++++.++++++.++......|. .++|++|++++|.++...... +..+++|++|++++|. ++....
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~---------- 116 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNA-IRYLPP---------- 116 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSC-CCCCCT----------
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHH-hcCCCCCCEEECCCCc-CCCCCH----------
Confidence 467899999999988776655555 689999999999887654333 3688999999998874 433221
Q ss_pred CchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHH
Q 003957 489 PCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSI 567 (784)
Q Consensus 489 ~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~ 567 (784)
..++.+++|++|+++ +.+...+. ..+..+++|++|++++| .+.......+. .+++|+.|+++.|.++...
T Consensus 117 ------~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 117 ------HVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNN-NLERIEDDTFQ-ATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp ------TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCBCCTTTTT-TCTTCCEEECTTSCCSBCC
T ss_pred ------HHHcCCCCCCEEEeeCCCCCCCCH-HHhccCCCCCEEEeeCC-cCCCCChhhhh-cCCcCcEEECcCCCCCCcC
Confidence 145778999999994 55554433 34577899999999998 33322222233 3789999999888887643
Q ss_pred HHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHH
Q 003957 568 IINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQL 646 (784)
Q Consensus 568 l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~ 646 (784)
+..+++|+.|++++|. .. + ...++|+.|+++++ .++.... ...++|+.|++++|.....
T Consensus 188 ----~~~l~~L~~L~l~~n~l~~-----l-~~~~~L~~L~ls~n--~l~~~~~----~~~~~L~~L~L~~n~l~~~---- 247 (597)
T 3oja_B 188 ----LSLIPSLFHANVSYNLLST-----L-AIPIAVEELDASHN--SINVVRG----PVNVELTILKLQHNNLTDT---- 247 (597)
T ss_dssp ----GGGCTTCSEEECCSSCCSE-----E-ECCTTCSEEECCSS--CCCEEEC----SCCSCCCEEECCSSCCCCC----
T ss_pred ----hhhhhhhhhhhcccCcccc-----c-cCCchhheeeccCC--ccccccc----ccCCCCCEEECCCCCCCCC----
Confidence 4668899999999983 22 1 23478999999995 5653221 1236899999999987763
Q ss_pred HHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc
Q 003957 647 IISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD 726 (784)
Q Consensus 647 ~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~ 726 (784)
.....+++|+.|+|++|. ++...+..+.++++|+.|+|++|.+ ..++..+..+++|+.|+|++|... .+|.
T Consensus 248 ~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l----~~l~~~~~~l~~L~~L~Ls~N~l~----~i~~ 318 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL----VALNLYGQPIPTLKVLDLSHNHLL----HVER 318 (597)
T ss_dssp GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCC----CEEECSSSCCTTCCEEECCSSCCC----CCGG
T ss_pred hhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCC----CCCCcccccCCCCcEEECCCCCCC----ccCc
Confidence 223568999999999987 7666666778999999999999976 444555677999999999999877 5677
Q ss_pred -ccCCCCCCEEEecCCCCcCccc
Q 003957 727 -YADRYSLSTVKITKCKSKNRNL 748 (784)
Q Consensus 727 -~~~~~~L~~L~is~C~~~~~~~ 748 (784)
+..+++|+.|++++|......+
T Consensus 319 ~~~~l~~L~~L~L~~N~l~~~~~ 341 (597)
T 3oja_B 319 NQPQFDRLENLYLDHNSIVTLKL 341 (597)
T ss_dssp GHHHHTTCSEEECCSSCCCCCCC
T ss_pred ccccCCCCCEEECCCCCCCCcCh
Confidence 8889999999999998755444
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-16 Score=171.44 Aligned_cols=165 Identities=23% Similarity=0.237 Sum_probs=121.4
Q ss_pred cCCCCcEEEeeeeccChHHHHH---HHhhC---------CCCcEEEeccc-CChhHHHH---hhcCCCCccEEEccCCCC
Q 003957 549 TCPMLELVVLYFQVMSDSIIIN---ILESL---------RRLQVLAICHC-LGDLSISS---FKLPLPNLRKLKLERVTP 612 (784)
Q Consensus 549 ~~~~L~~L~L~~~~i~~~~l~~---~~~~l---------~~L~~L~Ls~c-~~~~~~~~---l~~~~~~L~~L~L~~c~~ 612 (784)
.+++|++|+++.|.+++.+... .+..+ ++|++|++++| +++..+.. ....+++|++|++++|
T Consensus 120 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-- 197 (386)
T 2ca6_A 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-- 197 (386)
T ss_dssp HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS--
T ss_pred hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC--
Confidence 3677888888777776554433 33344 89999999999 45444443 3345689999999995
Q ss_pred CCChHHHHHH----HhcCCCCcEEEecCCCCCChH--HHHHHHhcCCCCcEEeecCCCCCCHHHHHHh----h--CCCCC
Q 003957 613 WMTNNDLVIL----TQNCSELVELSLVGCTLLSSD--SQLIISQGWPGLISLHLEECGDITAYGVTSL----F--NCIAL 680 (784)
Q Consensus 613 ~l~~~~l~~l----~~~~~~L~~L~Ls~c~~~~~~--~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l----~--~~~~L 680 (784)
.+++.++..+ +..+++|+.|++++|.+...+ ........+++|+.|+|++|. ++..+...+ . .+++|
T Consensus 198 ~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L 276 (386)
T 2ca6_A 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGL 276 (386)
T ss_dssp CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCC
T ss_pred CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCe
Confidence 7888775544 347899999999999864322 122334578999999999987 887755443 2 38999
Q ss_pred CEEEcccCCCCCChh---HHHHHH-hcCCCCceecccccccc
Q 003957 681 EDLLLRHNGPGIPRD---FILDAA-SKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 681 ~~L~L~~n~~gl~~~---~~~~~l-~~l~~L~~L~L~~c~~~ 718 (784)
+.|+|++|.+ ++. .++..+ .++++|+.|++++|+..
T Consensus 277 ~~L~L~~n~i--~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 277 QTLRLQYNEI--ELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CEEECCSSCC--BHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred EEEECcCCcC--CHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 9999999976 522 366666 67899999999999877
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-17 Score=174.59 Aligned_cols=201 Identities=16% Similarity=0.084 Sum_probs=95.1
Q ss_pred CcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHH-HHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCcc
Q 003957 525 KLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSI-IINILESLRRLQVLAICHCLGDLSISSFKLPLPNLR 603 (784)
Q Consensus 525 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~-l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~ 603 (784)
++|++|+++++ .+.......+. .+++|+.|+++.+.++..+ ....+.++++|++|++++|....... ...++|+
T Consensus 121 ~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~---~~~~~L~ 195 (330)
T 1xku_A 121 KTLQELRVHEN-EITKVRKSVFN-GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLT 195 (330)
T ss_dssp TTCCEEECCSS-CCCBBCHHHHT-TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS---SCCTTCS
T ss_pred ccccEEECCCC-cccccCHhHhc-CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc---cccccCC
Confidence 35555555554 22211111222 2556666666655554321 12234556677777776662111110 1125666
Q ss_pred EEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEE
Q 003957 604 KLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDL 683 (784)
Q Consensus 604 ~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L 683 (784)
+|+++++ .++.... ..+..+++|++|++++|.+.... .....++++|+.|++++|. ++. .+..+..+++|++|
T Consensus 196 ~L~l~~n--~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~-l~~-lp~~l~~l~~L~~L 268 (330)
T 1xku_A 196 ELHLDGN--KITKVDA-ASLKGLNNLAKLGLSFNSISAVD--NGSLANTPHLRELHLNNNK-LVK-VPGGLADHKYIQVV 268 (330)
T ss_dssp EEECTTS--CCCEECT-GGGTTCTTCCEEECCSSCCCEEC--TTTGGGSTTCCEEECCSSC-CSS-CCTTTTTCSSCCEE
T ss_pred EEECCCC--cCCccCH-HHhcCCCCCCEEECCCCcCceeC--hhhccCCCCCCEEECCCCc-Ccc-CChhhccCCCcCEE
Confidence 6776663 4443221 12335566677777666544311 1112346666666666665 331 11234456666777
Q ss_pred EcccCCCCCChhHHHHHHh------cCCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCC
Q 003957 684 LLRHNGPGIPRDFILDAAS------KMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKC 741 (784)
Q Consensus 684 ~L~~n~~gl~~~~~~~~l~------~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C 741 (784)
++++|.+ + ......+. ..+.|+.|++.+|+..... ..|. +..+++|+.+++++|
T Consensus 269 ~l~~N~i--~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~-i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 269 YLHNNNI--S-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE-IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ECCSSCC--C-CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG-SCGGGGTTCCCGGGEEC---
T ss_pred ECCCCcC--C-ccChhhcCCcccccccccccceEeecCcccccc-cCccccccccceeEEEeccc
Confidence 7766654 2 11111221 1355666666666654211 1122 666666666666665
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.9e-17 Score=174.10 Aligned_cols=178 Identities=15% Similarity=0.029 Sum_probs=89.7
Q ss_pred CCCCcEEEeeeeccChHHH-HHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCC
Q 003957 550 CPMLELVVLYFQVMSDSII-INILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSE 628 (784)
Q Consensus 550 ~~~L~~L~L~~~~i~~~~l-~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~ 628 (784)
+++|+.|+++.+.+++.+. ...+..+ +|+.|++++|.-..... ...++|++|+++++ .++..... .+..+++
T Consensus 146 l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n--~i~~~~~~-~l~~l~~ 218 (332)
T 2ft3_A 146 LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK---DLPETLNELHLDHN--KIQAIELE-DLLRYSK 218 (332)
T ss_dssp CSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS---SSCSSCSCCBCCSS--CCCCCCTT-SSTTCTT
T ss_pred CccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc---cccCCCCEEECCCC--cCCccCHH-HhcCCCC
Confidence 5556666665555543211 1122233 66666666662111111 11256777777763 44432211 2234667
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhc-----
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASK----- 703 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~----- 703 (784)
|+.|++++|.+.... .....++++|+.|++++|. ++. .+..+..+++|+.|++++|.+ + ......+..
T Consensus 219 L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~-l~~-lp~~l~~l~~L~~L~l~~N~l--~-~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIE--NGSLSFLPTLRELHLDNNK-LSR-VPAGLPDLKLLQVVYLHTNNI--T-KVGVNDFCPVGFGV 291 (332)
T ss_dssp CSCCBCCSSCCCCCC--TTGGGGCTTCCEEECCSSC-CCB-CCTTGGGCTTCCEEECCSSCC--C-BCCTTSSSCSSCCS
T ss_pred CCEEECCCCcCCcCC--hhHhhCCCCCCEEECCCCc-Cee-cChhhhcCccCCEEECCCCCC--C-ccChhHcccccccc
Confidence 777777776654411 1112356777777777765 442 122345677777777777754 3 222222222
Q ss_pred -CCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCC
Q 003957 704 -MPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCK 742 (784)
Q Consensus 704 -l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~ 742 (784)
.++|+.|++++|+..... ..|. +..+++|+.+++++|+
T Consensus 292 ~~~~l~~L~l~~N~~~~~~-~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWE-VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCBSEEECCSSSSCGGG-SCGGGGTTBCCSTTEEC----
T ss_pred ccccccceEeecCcccccc-cCcccccccchhhhhhccccc
Confidence 356777777777654211 1233 6777777777777764
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.7e-17 Score=172.33 Aligned_cols=290 Identities=16% Similarity=0.081 Sum_probs=174.2
Q ss_pred ccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEe
Q 003957 388 LQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLN 466 (784)
Q Consensus 388 L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~ 466 (784)
++..+++.+.. ...+..+...+++|+.|++++|.+++.....|. .++|++|++++|.++.... +..+++|++|+
T Consensus 12 l~i~~ls~~~l--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~ 86 (317)
T 3o53_A 12 YKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLD 86 (317)
T ss_dssp EEEESCCTTTH--HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEE
T ss_pred eeEeeccccch--hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEE
Confidence 34444444332 223334445666777777777777666555554 4677777777776654321 45667777777
Q ss_pred ccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHh
Q 003957 467 ARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLL 546 (784)
Q Consensus 467 L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l 546 (784)
+++|. ++. +...+ +|+.|+++++ .++.. .
T Consensus 87 Ls~n~-l~~---------------------l~~~~------------------------~L~~L~l~~n-~l~~~----~ 115 (317)
T 3o53_A 87 LNNNY-VQE---------------------LLVGP------------------------SIETLHAANN-NISRV----S 115 (317)
T ss_dssp CCSSE-EEE---------------------EEECT------------------------TCCEEECCSS-CCSEE----E
T ss_pred CcCCc-ccc---------------------ccCCC------------------------CcCEEECCCC-ccCCc----C
Confidence 76652 221 11123 4444444444 11111 0
Q ss_pred hccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhc
Q 003957 547 PTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQN 625 (784)
Q Consensus 547 ~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~ 625 (784)
...+++|++|+++.|.++... ...+..+++|++|++++| +.......+...+++|++|+++++ .++... . ...
T Consensus 116 ~~~~~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N--~l~~~~--~-~~~ 189 (317)
T 3o53_A 116 CSRGQGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN--FIYDVK--G-QVV 189 (317)
T ss_dssp ECCCSSCEEEECCSSCCCSGG-GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS--CCCEEE--C-CCC
T ss_pred ccccCCCCEEECCCCCCCCcc-chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC--cCcccc--c-ccc
Confidence 122556777777766666531 223456778888888887 344444445445688888888884 565431 1 113
Q ss_pred CCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCC
Q 003957 626 CSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMP 705 (784)
Q Consensus 626 ~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~ 705 (784)
+++|++|++++|.+..-. .. ...+++|+.|++++|. ++.. +..+..+++|+.|++++|.+ ....++..+..++
T Consensus 190 l~~L~~L~Ls~N~l~~l~--~~-~~~l~~L~~L~L~~N~-l~~l-~~~~~~l~~L~~L~l~~N~~--~~~~~~~~~~~~~ 262 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFMG--PE-FQSAAGVTWISLRNNK-LVLI-EKALRFSQNLEHFDLRGNGF--HCGTLRDFFSKNQ 262 (317)
T ss_dssp CTTCCEEECCSSCCCEEC--GG-GGGGTTCSEEECTTSC-CCEE-CTTCCCCTTCCEEECTTCCC--BHHHHHHHHHTCH
T ss_pred cccCCEEECCCCcCCcch--hh-hcccCcccEEECcCCc-ccch-hhHhhcCCCCCEEEccCCCc--cCcCHHHHHhccc
Confidence 778999999998775421 11 3468899999999986 5532 23456789999999999976 4357788899999
Q ss_pred CCceeccccccccCCCCCcccccCCCCCCEEEecCCCCcCccc
Q 003957 706 MLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKSKNRNL 748 (784)
Q Consensus 706 ~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~~~~~~ 748 (784)
+|+.|++.+++..++. .|.......+....-..|......|
T Consensus 263 ~L~~l~l~~~~~l~~~--~~~~~~~~~~~~~~~~cc~~l~~~~ 303 (317)
T 3o53_A 263 RVQTVAKQTVKKLTGQ--NEEECTVPTLGHYGAYCCEDLPAPF 303 (317)
T ss_dssp HHHHHHHHHHHHHHSS--SSCCCSSTTCEEETTEEEBCCTTTH
T ss_pred cceEEECCCchhccCC--chhccCCCceecccceeeccCChhH
Confidence 9999999988877543 1222222233333334466655555
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.2e-16 Score=165.67 Aligned_cols=136 Identities=10% Similarity=0.100 Sum_probs=79.4
Q ss_pred CCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHH---HHHhh
Q 003957 599 LPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYG---VTSLF 675 (784)
Q Consensus 599 ~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~---~~~l~ 675 (784)
+++|++|+++++ .++.... ..+..+++|++|++++|.... ........+++|+.|++++|. ++... +....
T Consensus 173 l~~L~~L~l~~n--~l~~~~~-~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~ 246 (353)
T 2z80_A 173 LTFLEELEIDAS--DLQSYEP-KSLKSIQNVSHLILHMKQHIL--LLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGE 246 (353)
T ss_dssp CCEEEEEEEEET--TCCEECT-TTTTTCSEEEEEEEECSCSTT--HHHHHHHHTTTEEEEEEESCB-CTTCCCC------
T ss_pred CCCCCEEECCCC--CcCccCH-HHHhccccCCeecCCCCcccc--chhhhhhhcccccEEECCCCc-ccccccccccccc
Confidence 355555555552 3332211 122345666677776666533 222233346667777777665 33221 11223
Q ss_pred CCCCCCEEEcccCCCCCChh---HHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCcCc
Q 003957 676 NCIALEDLLLRHNGPGIPRD---FILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 676 ~~~~L~~L~L~~n~~gl~~~---~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~~~ 746 (784)
..+.++.++++++.+ ++. .+++.+..+++|+.|++++|... .+|. +..+++|++|++++|+....
T Consensus 247 ~~~~l~~l~L~~~~l--~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~----~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 247 TNSLIKKFTFRNVKI--TDESLFQVMKLLNQISGLLELEFSRNQLK----SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCCCCEEEEESCBC--CHHHHHHHHHHHHTCTTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccchhhccccccccc--cCcchhhhHHHHhcccCCCEEECCCCCCC----ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 466778888887754 432 34556788888888888888665 4566 57888899999998875544
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=155.84 Aligned_cols=79 Identities=19% Similarity=0.145 Sum_probs=45.7
Q ss_pred EEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhh----hhcc-cC-CcCEEEecCCccchhhHHHHH---hcC-C
Q 003957 391 LHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKAL----YNFS-GS-SLEMLDVSDTMISGAALAYMV---HGN-S 460 (784)
Q Consensus 391 L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~----~~l~-~~-~L~~L~Ls~~~i~~~~l~~~~---~~l-~ 460 (784)
++++++.. + ..++.+....++|+.|++++|.+++.+. ..+. .+ +|++|+|++|.+++.+...+. ... +
T Consensus 3 ~~ls~n~~-~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPG-S-NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTT-C-CHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccc-h-HHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 34555433 2 2334444555568888888877776665 3333 34 677777777776655443332 222 6
Q ss_pred CccEEeccCCC
Q 003957 461 GLKYLNARGCK 471 (784)
Q Consensus 461 ~L~~L~L~~c~ 471 (784)
+|++|++++|.
T Consensus 81 ~L~~L~Ls~n~ 91 (362)
T 3goz_A 81 NVTSLNLSGNF 91 (362)
T ss_dssp TCCEEECCSSC
T ss_pred CccEEECcCCc
Confidence 77777777663
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-15 Score=164.73 Aligned_cols=83 Identities=22% Similarity=0.213 Sum_probs=60.5
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCcc
Q 003957 385 ASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLK 463 (784)
Q Consensus 385 l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~ 463 (784)
.++|++|+++++.. +..... .+..+++|+.|++++|.+++.....|. .++|++|++++|.++...... +.++++|+
T Consensus 51 ~~~L~~L~l~~n~i-~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~ 127 (353)
T 2z80_A 51 TEAVKSLDLSNNRI-TYISNS-DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW-FKPLSSLT 127 (353)
T ss_dssp CTTCCEEECTTSCC-CEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHH-HTTCTTCS
T ss_pred cccCcEEECCCCcC-cccCHH-HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhH-hCCCccCC
Confidence 46899999998764 221111 136789999999999988876666665 588999999998877644433 36788899
Q ss_pred EEeccCC
Q 003957 464 YLNARGC 470 (784)
Q Consensus 464 ~L~L~~c 470 (784)
+|+++++
T Consensus 128 ~L~L~~n 134 (353)
T 2z80_A 128 FLNLLGN 134 (353)
T ss_dssp EEECTTC
T ss_pred EEECCCC
Confidence 9998776
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-14 Score=154.56 Aligned_cols=146 Identities=12% Similarity=0.122 Sum_probs=71.9
Q ss_pred HHHHHHcCCCCCeEecCCCCccCHHH---HHHHHHhCC-CCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhc
Q 003957 309 LEFISKYCVSLGYINIKGCVSVTDVC---ISNLIRRCV-KLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTL 384 (784)
Q Consensus 309 l~~l~~~~~~L~~L~L~~c~~l~~~~---l~~l~~~~~-~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 384 (784)
++.+....++|++|++++|. +++.+ +...+.+++ +|++|++++|.++..+...++.. +..
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~---------------l~~ 77 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI---------------LAA 77 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH---------------HHT
T ss_pred HHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH---------------Hhc
Confidence 33444445557777777754 33322 223444555 67777777776665444433211 122
Q ss_pred -CCCccEEEecCCCCC--CHHHHHHHHHhC-ccccEEEecCCcCchhhhhhcc------cCCcCEEEecCCccchhhHHH
Q 003957 385 -ASNLQMLHMACCNGV--DGMYLLELMCQA-RKLKSLCLSGTQLADKALYNFS------GSSLEMLDVSDTMISGAALAY 454 (784)
Q Consensus 385 -l~~L~~L~L~~c~~l--~~~~l~~l~~~~-~~L~~L~Ls~~~l~~~~~~~l~------~~~L~~L~Ls~~~i~~~~l~~ 454 (784)
.++|++|+|++|..- ....+......+ ++|+.|++++|.+++.+...+. .++|++|++++|.+++.+...
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 256666666666531 112222222333 5666666666665555443332 135566666655555433222
Q ss_pred H---HhcCC-CccEEeccCC
Q 003957 455 M---VHGNS-GLKYLNARGC 470 (784)
Q Consensus 455 ~---~~~l~-~L~~L~L~~c 470 (784)
+ +...+ +|++|++++|
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHhcCCccccEeeecCC
Confidence 2 22333 5555555544
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-15 Score=163.16 Aligned_cols=270 Identities=14% Similarity=0.058 Sum_probs=155.4
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT 422 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~ 422 (784)
++++.|++++|.++.. .+..+..+++|++|++++|.... .. +..+..+++|+.|++++|
T Consensus 52 ~~l~~L~L~~n~i~~~-------------------~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 52 PDTALLDLQNNKITEI-------------------KDGDFKNLKNLHTLILINNKISK-IS-PGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TTCCEEECCSSCCCCB-------------------CTTTTTTCTTCCEEECCSSCCCC-BC-TTTTTTCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCEe-------------------ChhhhccCCCCCEEECCCCcCCe-eC-HHHhcCCCCCCEEECCCC
Confidence 5788888888877651 11234778999999999886421 11 112367899999999999
Q ss_pred cCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCC
Q 003957 423 QLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRK 502 (784)
Q Consensus 423 ~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 502 (784)
.++...... .++|++|++++|.++...... +.++++|++|+++++. +...+.. ...+..+++
T Consensus 111 ~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~--------------~~~~~~l~~ 172 (330)
T 1xku_A 111 QLKELPEKM--PKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNP-LKSSGIE--------------NGAFQGMKK 172 (330)
T ss_dssp CCSBCCSSC--CTTCCEEECCSSCCCBBCHHH-HTTCTTCCEEECCSSC-CCGGGBC--------------TTGGGGCTT
T ss_pred cCCccChhh--cccccEEECCCCcccccCHhH-hcCCccccEEECCCCc-CCccCcC--------------hhhccCCCC
Confidence 877543222 378999999999887655443 3688999999998763 2221111 123445556
Q ss_pred ccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEE
Q 003957 503 LEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVL 581 (784)
Q Consensus 503 L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L 581 (784)
|++|+++ +.+..++.. ..++|++|+++.+.+++.. ...+.++++|++|
T Consensus 173 L~~L~l~~n~l~~l~~~------------------------------~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L 221 (330)
T 1xku_A 173 LSYIRIADTNITTIPQG------------------------------LPPSLTELHLDGNKITKVD-AASLKGLNNLAKL 221 (330)
T ss_dssp CCEEECCSSCCCSCCSS------------------------------CCTTCSEEECTTSCCCEEC-TGGGTTCTTCCEE
T ss_pred cCEEECCCCccccCCcc------------------------------ccccCCEEECCCCcCCccC-HHHhcCCCCCCEE
Confidence 6666663 222221111 1245555555554444421 1234556666666
Q ss_pred Eeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHH----HHhcCCCCc
Q 003957 582 AICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLI----ISQGWPGLI 656 (784)
Q Consensus 582 ~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~----~~~~~~~L~ 656 (784)
++++| +.+.....+ ..+++|++|+++++ .++. +...+..+++|++|++++|.+..-..... .....+.|+
T Consensus 222 ~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N--~l~~--lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~ 296 (330)
T 1xku_A 222 GLSFNSISAVDNGSL-ANTPHLRELHLNNN--KLVK--VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296 (330)
T ss_dssp ECCSSCCCEECTTTG-GGSTTCCEEECCSS--CCSS--CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCS
T ss_pred ECCCCcCceeChhhc-cCCCCCCEEECCCC--cCcc--CChhhccCCCcCEEECCCCcCCccChhhcCCccccccccccc
Confidence 66666 222221122 23467777777773 4442 22223456778888888776554111000 001246788
Q ss_pred EEeecCCCCCCH--HHHHHhhCCCCCCEEEcccC
Q 003957 657 SLHLEECGDITA--YGVTSLFNCIALEDLLLRHN 688 (784)
Q Consensus 657 ~L~L~~c~~i~~--~~~~~l~~~~~L~~L~L~~n 688 (784)
.|++.+|+ +.. ..+..+..+++++.+++++|
T Consensus 297 ~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 297 GVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp EEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 88888877 332 22345567888999999887
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.8e-15 Score=169.94 Aligned_cols=257 Identities=19% Similarity=0.071 Sum_probs=149.2
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT 422 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~ 422 (784)
.+++.|+++++.++. +|..+ .++|+.|++++|..- .++ ..+++|+.|++++|
T Consensus 40 ~~l~~L~ls~n~L~~--------------------lp~~l--~~~L~~L~L~~N~l~---~lp---~~l~~L~~L~Ls~N 91 (622)
T 3g06_A 40 NGNAVLNVGESGLTT--------------------LPDCL--PAHITTLVIPDNNLT---SLP---ALPPELRTLEVSGN 91 (622)
T ss_dssp HCCCEEECCSSCCSC--------------------CCSCC--CTTCSEEEECSCCCS---CCC---CCCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCc--------------------cChhh--CCCCcEEEecCCCCC---CCC---CcCCCCCEEEcCCC
Confidence 468888888887764 33322 278899999888642 121 15678888888888
Q ss_pred cCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCC
Q 003957 423 QLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRK 502 (784)
Q Consensus 423 ~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 502 (784)
.++.... ..++|++|++++|.++.... .+++|++|+++++. ++...
T Consensus 92 ~l~~lp~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~-l~~lp------------------------- 137 (622)
T 3g06_A 92 QLTSLPV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQ-LTSLP------------------------- 137 (622)
T ss_dssp CCSCCCC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSC-CSCCC-------------------------
T ss_pred cCCcCCC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCC-CCcCC-------------------------
Confidence 7664332 34678888888776654221 45677777776652 22110
Q ss_pred ccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEE
Q 003957 503 LEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLA 582 (784)
Q Consensus 503 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~ 582 (784)
..+++|++|++++| .++ .++..+++|+.|+++.|.++... ..+++|+.|+
T Consensus 138 -------------------~~l~~L~~L~Ls~N-~l~-----~l~~~~~~L~~L~L~~N~l~~l~-----~~~~~L~~L~ 187 (622)
T 3g06_A 138 -------------------VLPPGLQELSVSDN-QLA-----SLPALPSELCKLWAYNNQLTSLP-----MLPSGLQELS 187 (622)
T ss_dssp -------------------CCCTTCCEEECCSS-CCS-----CCCCCCTTCCEEECCSSCCSCCC-----CCCTTCCEEE
T ss_pred -------------------CCCCCCCEEECcCC-cCC-----CcCCccCCCCEEECCCCCCCCCc-----ccCCCCcEEE
Confidence 11245666666665 222 12234566777777766666521 4456777777
Q ss_pred ecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeec
Q 003957 583 ICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLE 661 (784)
Q Consensus 583 Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~ 661 (784)
+++|. .. +....++|+.|.++++ .++... ..+++|+.|++++|.+.. +...+++|+.|+|+
T Consensus 188 Ls~N~l~~-----l~~~~~~L~~L~L~~N--~l~~l~-----~~~~~L~~L~Ls~N~L~~------lp~~l~~L~~L~Ls 249 (622)
T 3g06_A 188 VSDNQLAS-----LPTLPSELYKLWAYNN--RLTSLP-----ALPSGLKELIVSGNRLTS------LPVLPSELKELMVS 249 (622)
T ss_dssp CCSSCCSC-----CCCCCTTCCEEECCSS--CCSSCC-----CCCTTCCEEECCSSCCSC------CCCCCTTCCEEECC
T ss_pred CCCCCCCC-----CCCccchhhEEECcCC--cccccC-----CCCCCCCEEEccCCccCc------CCCCCCcCcEEECC
Confidence 77772 21 1123367777777773 444211 234567777777765543 11345666777776
Q ss_pred CCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 662 ECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 662 ~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+|. ++... . .+++|+.|++++|.+ ..++..+..+++|+.|+|++|+..
T Consensus 250 ~N~-L~~lp--~--~~~~L~~L~Ls~N~L----~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 250 GNR-LTSLP--M--LPSGLLSLSVYRNQL----TRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp SSC-CSCCC--C--CCTTCCEEECCSSCC----CSCCGGGGGSCTTCEEECCSCCCC
T ss_pred CCC-CCcCC--c--ccccCcEEeCCCCCC----CcCCHHHhhccccCEEEecCCCCC
Confidence 664 33211 1 456666666666655 344455666666666666666554
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-16 Score=169.56 Aligned_cols=269 Identities=13% Similarity=0.033 Sum_probs=141.9
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCcc
Q 003957 385 ASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLK 463 (784)
Q Consensus 385 l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~ 463 (784)
.++|+.|++++|... ... +..+..+++|+.|++++|.++......|. .++|++|++++|.++.... ...++|+
T Consensus 53 ~~~l~~L~l~~n~i~-~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~----~~~~~L~ 126 (332)
T 2ft3_A 53 SPDTTLLDLQNNDIS-ELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP----NLPSSLV 126 (332)
T ss_dssp CTTCCEEECCSSCCC-EEC-TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCS----SCCTTCC
T ss_pred CCCCeEEECCCCcCC-ccC-HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCc----cccccCC
Confidence 467888888887542 111 11126778888888888877766666665 5788888888876653221 1126788
Q ss_pred EEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCccc-HhhhhhhcCcccEEEecCCCCCChH
Q 003957 464 YLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLS-LEVLKPAIKLLHSITVGLGGSLGED 541 (784)
Q Consensus 464 ~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~-~~~~~~~l~~L~~L~L~~~~~l~~~ 541 (784)
+|+++++. ++.... ..+..+++|+.|+++ +.+.... ....+..+ +
T Consensus 127 ~L~l~~n~-i~~~~~----------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~--------------- 173 (332)
T 2ft3_A 127 ELRIHDNR-IRKVPK----------------GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K--------------- 173 (332)
T ss_dssp EEECCSSC-CCCCCS----------------GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C---------------
T ss_pred EEECCCCc-cCccCH----------------hHhCCCccCCEEECCCCccccCCCCcccccCC-c---------------
Confidence 88877652 222111 123445556666663 2222100 01111112 4
Q ss_pred HHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHH
Q 003957 542 ALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLV 620 (784)
Q Consensus 542 ~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~ 620 (784)
|+.|+++.+.++.. +. .-.++|++|++++|. ....... ...+++|++|+++++ .++.....
T Consensus 174 -----------L~~L~l~~n~l~~l--~~--~~~~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~L~L~~N--~l~~~~~~ 235 (332)
T 2ft3_A 174 -----------LNYLRISEAKLTGI--PK--DLPETLNELHLDHNKIQAIELED-LLRYSKLYRLGLGHN--QIRMIENG 235 (332)
T ss_dssp -----------CSCCBCCSSBCSSC--CS--SSCSSCSCCBCCSSCCCCCCTTS-STTCTTCSCCBCCSS--CCCCCCTT
T ss_pred -----------cCEEECcCCCCCcc--Cc--cccCCCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCC--cCCcCChh
Confidence 44444444443331 00 011456666666652 2211111 223466777777763 44432211
Q ss_pred HHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhC------CCCCCEEEcccCCCCCCh
Q 003957 621 ILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFN------CIALEDLLLRHNGPGIPR 694 (784)
Q Consensus 621 ~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~------~~~L~~L~L~~n~~gl~~ 694 (784)
.+..+++|++|++++|.... .......+++|+.|++++|. ++..+...+.. .+.|+.|++++|.+...
T Consensus 236 -~~~~l~~L~~L~L~~N~l~~---lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~- 309 (332)
T 2ft3_A 236 -SLSFLPTLRELHLDNNKLSR---VPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW- 309 (332)
T ss_dssp -GGGGCTTCCEEECCSSCCCB---CCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG-
T ss_pred -HhhCCCCCCEEECCCCcCee---cChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCccccc-
Confidence 23456777777777776542 11112457778888888765 55444444322 46788888888865111
Q ss_pred hHHHHHHhcCCCCceecccccc
Q 003957 695 DFILDAASKMPMLRLVSLDLCD 716 (784)
Q Consensus 695 ~~~~~~l~~l~~L~~L~L~~c~ 716 (784)
...+..+..+++|+.+++++|.
T Consensus 310 ~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 310 EVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GSCGGGGTTBCCSTTEEC----
T ss_pred ccCcccccccchhhhhhccccc
Confidence 2334557778888888888764
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-16 Score=167.36 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=94.4
Q ss_pred CCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCCh-HHHHHHH--hcCCCCcEEEecCCCCCChH-HHHHHHh
Q 003957 576 RRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTN-NDLVILT--QNCSELVELSLVGCTLLSSD-SQLIISQ 650 (784)
Q Consensus 576 ~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~-~~l~~l~--~~~~~L~~L~Ls~c~~~~~~-~~~~~~~ 650 (784)
++|++|++++|. ....... ...+++|++|+++++ .+.. .++.... ..+++|++|++++|.+.... ....+..
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQ-VRVFPALSTLDLSDN--PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTT-CCCCSSCCEEECCSC--TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH
T ss_pred CCCcEEEeeCCCCccchHHH-hccCCCCCEEECCCC--CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh
Confidence 555666665552 2111112 224466777777763 3432 2222222 56677778888777665422 2223445
Q ss_pred cCCCCcEEeecCCCCCCHHH-HHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccC
Q 003957 651 GWPGLISLHLEECGDITAYG-VTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYAD 729 (784)
Q Consensus 651 ~~~~L~~L~L~~c~~i~~~~-~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~ 729 (784)
++++|+.|++++|. ++... ...+..+++|+.|++++|.+ ..++..+. ++|+.|++++|... ++|.+..
T Consensus 226 ~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l----~~ip~~~~--~~L~~L~Ls~N~l~----~~p~~~~ 294 (312)
T 1wwl_A 226 ARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGL----KQVPKGLP--AKLSVLDLSYNRLD----RNPSPDE 294 (312)
T ss_dssp TTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCC----SSCCSSCC--SEEEEEECCSSCCC----SCCCTTT
T ss_pred cCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCcc----Chhhhhcc--CCceEEECCCCCCC----CChhHhh
Confidence 67788888888776 44322 22334578888899988876 34444333 78899999887665 3466778
Q ss_pred CCCCCEEEecCCCCcC
Q 003957 730 RYSLSTVKITKCKSKN 745 (784)
Q Consensus 730 ~~~L~~L~is~C~~~~ 745 (784)
+++|++|++++|+..+
T Consensus 295 l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 295 LPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCEEEEEECTTCTTTC
T ss_pred CCCCCEEeccCCCCCC
Confidence 8899999999887543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-16 Score=169.81 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=63.1
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCc
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLR 708 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~ 708 (784)
|++|++++|..... ......++++|+.|++++|. ++.. +..+..+++|++|++++|.+ . ..++..+..+++|+
T Consensus 199 L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~-l~~~-~~~~~~l~~L~~L~Ls~N~l--~-~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 199 LAFVDLSRNMLEGD--ASVLFGSDKNTQKIHLAKNS-LAFD-LGKVGLSKNLNGLDLRNNRI--Y-GTLPQGLTQLKFLH 271 (313)
T ss_dssp CSEEECCSSEEEEC--CGGGCCTTSCCSEEECCSSE-ECCB-GGGCCCCTTCCEEECCSSCC--E-ECCCGGGGGCTTCC
T ss_pred ccEEECcCCcccCc--CCHHHhcCCCCCEEECCCCc-eeee-cCcccccCCCCEEECcCCcc--c-CcCChHHhcCcCCC
Confidence 66666666654321 11122346677777777665 3311 11244677777777777755 3 34556677777777
Q ss_pred eeccccccccCCCCCcccccCCCCCCEEEecCCCC
Q 003957 709 LVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKS 743 (784)
Q Consensus 709 ~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~ 743 (784)
.|++++|+.. + .+|....+++|+.+++++|+.
T Consensus 272 ~L~Ls~N~l~-~--~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 272 SLNVSFNNLC-G--EIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp EEECCSSEEE-E--ECCCSTTGGGSCGGGTCSSSE
T ss_pred EEECcCCccc-c--cCCCCccccccChHHhcCCCC
Confidence 7777777655 2 234456667777777777763
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.9e-17 Score=170.50 Aligned_cols=196 Identities=14% Similarity=0.064 Sum_probs=123.1
Q ss_pred hhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCC
Q 003957 521 KPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPL 599 (784)
Q Consensus 521 ~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~ 599 (784)
+..+++|+.|+++++. ++ .++. .++|++|+++.|.+++.. ...+++|++|++++|. ....... ...+
T Consensus 76 ~~~l~~L~~L~Ls~n~-l~-----~l~~-~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~l~~~~~~~-~~~l 143 (317)
T 3o53_A 76 LESLSTLRTLDLNNNY-VQ-----ELLV-GPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLD-EGCR 143 (317)
T ss_dssp ETTCTTCCEEECCSSE-EE-----EEEE-CTTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSCCCSGGGBC-TGGG
T ss_pred hhhcCCCCEEECcCCc-cc-----cccC-CCCcCEEECCCCccCCcC----ccccCCCCEEECCCCCCCCccchh-hhcc
Confidence 3445667777777662 22 2222 478888888877776642 2346788888888883 3222222 2345
Q ss_pred CCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCC
Q 003957 600 PNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIA 679 (784)
Q Consensus 600 ~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~ 679 (784)
++|++|++++ +.++......+...+++|++|++++|.+.... ....+++|+.|++++|. ++.... .+..+++
T Consensus 144 ~~L~~L~Ls~--N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~l~~L~~L~Ls~N~-l~~l~~-~~~~l~~ 215 (317)
T 3o53_A 144 SRVQYLDLKL--NEIDTVNFAELAASSDTLEHLNLQYNFIYDVK----GQVVFAKLKTLDLSSNK-LAFMGP-EFQSAAG 215 (317)
T ss_dssp SSEEEEECTT--SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE----CCCCCTTCCEEECCSSC-CCEECG-GGGGGTT
T ss_pred CCCCEEECCC--CCCCcccHHHHhhccCcCCEEECCCCcCcccc----cccccccCCEEECCCCc-CCcchh-hhcccCc
Confidence 7888888888 45665544445556778888888888765421 01136778888888776 443222 2556778
Q ss_pred CCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCC
Q 003957 680 LEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCK 742 (784)
Q Consensus 680 L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~ 742 (784)
|+.|++++|.+ ..++..+..+++|+.|++++|+...+ .+|. +..++.|+.|++++|+
T Consensus 216 L~~L~L~~N~l----~~l~~~~~~l~~L~~L~l~~N~~~~~--~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 216 VTWISLRNNKL----VLIEKALRFSQNLEHFDLRGNGFHCG--TLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CSEEECTTSCC----CEECTTCCCCTTCCEEECTTCCCBHH--HHHHHHHTCHHHHHHHHHHHH
T ss_pred ccEEECcCCcc----cchhhHhhcCCCCCEEEccCCCccCc--CHHHHHhccccceEEECCCch
Confidence 88888888866 44555567777888888887766522 2344 6667777777777554
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.7e-16 Score=163.67 Aligned_cols=252 Identities=12% Similarity=0.020 Sum_probs=143.1
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT 422 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~ 422 (784)
.+++.|+++++.+... ..+|..+..+++|++|+++++..++... +..+..+++|+.|++++|
T Consensus 50 ~~l~~L~L~~~~l~~~-----------------~~~~~~l~~l~~L~~L~L~~~n~l~~~~-p~~l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP-----------------YPIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHT 111 (313)
T ss_dssp CCEEEEEEECCCCSSC-----------------EECCGGGGGCTTCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEE
T ss_pred ceEEEEECCCCCccCC-----------------cccChhHhCCCCCCeeeCCCCCcccccC-ChhHhcCCCCCEEECcCC
Confidence 4677788887766520 0144556788999999998533322211 112368899999999998
Q ss_pred cCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCC
Q 003957 423 QLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTR 501 (784)
Q Consensus 423 ~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 501 (784)
.++......+. .++|++|++++|.++...... +..+++|++|+++++.. +. .+...+..++
T Consensus 112 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l-~~----------------~~p~~l~~l~ 173 (313)
T 1ogq_A 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRI-SG----------------AIPDSYGSFS 173 (313)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCC-EE----------------ECCGGGGCCC
T ss_pred eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCCcc-cC----------------cCCHHHhhhh
Confidence 88766555555 588999999988776433222 35778888888877632 21 1122444544
Q ss_pred -CccEEEecc-ccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCc
Q 003957 502 -KLEEIVLGW-GFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQ 579 (784)
Q Consensus 502 -~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~ 579 (784)
.|++|+++. .+...... .+.. ++ |+.|+++.|.+++. .+..+..+++|+
T Consensus 174 ~~L~~L~L~~N~l~~~~~~-~~~~--------------------------l~-L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 224 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKIPP-TFAN--------------------------LN-LAFVDLSRNMLEGD-ASVLFGSDKNTQ 224 (313)
T ss_dssp TTCCEEECCSSEEEEECCG-GGGG--------------------------CC-CSEEECCSSEEEEC-CGGGCCTTSCCS
T ss_pred hcCcEEECcCCeeeccCCh-HHhC--------------------------Cc-ccEEECcCCcccCc-CCHHHhcCCCCC
Confidence 566666632 22211111 1122 22 55555554444432 223345566677
Q ss_pred EEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEe
Q 003957 580 VLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLH 659 (784)
Q Consensus 580 ~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~ 659 (784)
.|++++|........ ...+++|++|+++++ .++.. +...+..+++|++|++++|......+. . ..+++|+.|+
T Consensus 225 ~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N--~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ip~--~-~~l~~L~~l~ 297 (313)
T 1ogq_A 225 KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN--RIYGT-LPQGLTQLKFLHSLNVSFNNLCGEIPQ--G-GNLQRFDVSA 297 (313)
T ss_dssp EEECCSSEECCBGGG-CCCCTTCCEEECCSS--CCEEC-CCGGGGGCTTCCEEECCSSEEEEECCC--S-TTGGGSCGGG
T ss_pred EEECCCCceeeecCc-ccccCCCCEEECcCC--cccCc-CChHHhcCcCCCEEECcCCcccccCCC--C-ccccccChHH
Confidence 777766621111111 234477777777773 45422 122334577888888888766532111 1 3467788888
Q ss_pred ecCCCCC
Q 003957 660 LEECGDI 666 (784)
Q Consensus 660 L~~c~~i 666 (784)
+.+|+.+
T Consensus 298 l~~N~~l 304 (313)
T 1ogq_A 298 YANNKCL 304 (313)
T ss_dssp TCSSSEE
T ss_pred hcCCCCc
Confidence 8777643
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-15 Score=160.45 Aligned_cols=222 Identities=18% Similarity=0.145 Sum_probs=150.4
Q ss_pred CCCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCC
Q 003957 500 TRKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRL 578 (784)
Q Consensus 500 l~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L 578 (784)
.+.++.|++ ++.+..++. .+..+++|++|+++++. +. .....++ .+++|++|+++.|.++. ++..+.++++|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~n~-l~-~lp~~~~-~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPD--QAFRLSHLQHMTIDAAG-LM-ELPDTMQ-QFAGLETLTLARNPLRA--LPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEESSCCSSCCS--CGGGGTTCSEEEEESSC-CC-CCCSCGG-GGTTCSEEEEESCCCCC--CCGGGGGCTTC
T ss_pred ccceeEEEccCCCchhcCh--hhhhCCCCCEEECCCCC-cc-chhHHHh-ccCCCCEEECCCCcccc--CcHHHhcCcCC
Confidence 467899999 555554333 35558889999999873 33 1112233 37889999998888773 45557788999
Q ss_pred cEEEeccc-CChhHHHHhh--------cCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHH
Q 003957 579 QVLAICHC-LGDLSISSFK--------LPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIIS 649 (784)
Q Consensus 579 ~~L~Ls~c-~~~~~~~~l~--------~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~ 649 (784)
++|++++| ........+. ..+++|++|+++++ .++ .+...+.++++|++|++++|....- .. ..
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n--~l~--~lp~~l~~l~~L~~L~L~~N~l~~l--~~-~l 225 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT--GIR--SLPASIANLQNLKSLKIRNSPLSAL--GP-AI 225 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE--CCC--CCCGGGGGCTTCCEEEEESSCCCCC--CG-GG
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC--CcC--cchHhhcCCCCCCEEEccCCCCCcC--ch-hh
Confidence 99999987 2222222221 23688888888884 555 2323355788888888888876641 11 23
Q ss_pred hcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-cc
Q 003957 650 QGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YA 728 (784)
Q Consensus 650 ~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~ 728 (784)
..+++|+.|++++|+..+ ..+..+.++++|+.|++++|.+ . ..++..+..+++|+.|+|++|+... .+|. +.
T Consensus 226 ~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~--~-~~~p~~~~~l~~L~~L~L~~n~~~~---~iP~~l~ 298 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSN--L-LTLPLDIHRLTQLEKLDLRGCVNLS---RLPSLIA 298 (328)
T ss_dssp GGCTTCCEEECTTCTTCC-BCCCCTTCCCCCCEEECTTCTT--C-CBCCTTGGGCTTCCEEECTTCTTCC---CCCGGGG
T ss_pred ccCCCCCEEECcCCcchh-hhHHHhcCCCCCCEEECCCCCc--h-hhcchhhhcCCCCCEEeCCCCCchh---hccHHHh
Confidence 467888888888887443 3334456788888888888754 3 4555567888888888888888773 3577 88
Q ss_pred CCCCCCEEEecCCC
Q 003957 729 DRYSLSTVKITKCK 742 (784)
Q Consensus 729 ~~~~L~~L~is~C~ 742 (784)
++++|+.+++....
T Consensus 299 ~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 299 QLPANCIILVPPHL 312 (328)
T ss_dssp GSCTTCEEECCGGG
T ss_pred hccCceEEeCCHHH
Confidence 88888888887543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.6e-15 Score=164.59 Aligned_cols=224 Identities=14% Similarity=0.080 Sum_probs=164.8
Q ss_pred CCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCc
Q 003957 501 RKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQ 579 (784)
Q Consensus 501 ~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~ 579 (784)
+.++.|+++ +.+..+... .+..+++|+.|+++++ .+.......+. .+++|+.|+++.|.++.. ....+.++++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n-~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRN-SIRQIEVGAFN-GLASLNTLELFDNWLTVI-PSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSSCCSBC-CTTTSSSCTTCC
T ss_pred CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCC-ccCCcChhhcc-CcccCCEEECCCCcCCcc-ChhhhcccCCCC
Confidence 578999994 455544433 4677899999999988 34332222333 378899999988887753 223467789999
Q ss_pred EEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEe
Q 003957 580 VLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLH 659 (784)
Q Consensus 580 ~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~ 659 (784)
+|++++|............+++|++|++++| +.++.... ..+.++++|+.|++++|.+..-. . ...+++|+.|+
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~-~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~---~-~~~l~~L~~L~ 224 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGEL-KKLEYISE-GAFEGLFNLKYLNLGMCNIKDMP---N-LTPLVGLEELE 224 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCC-TTCCEECT-TTTTTCTTCCEEECTTSCCSSCC---C-CTTCTTCCEEE
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCC-CCccccCh-hhccCCCCCCEEECCCCcccccc---c-ccccccccEEE
Confidence 9999999322222333456799999999997 55553322 23456889999999999876521 1 24688999999
Q ss_pred ecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEE
Q 003957 660 LEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVK 737 (784)
Q Consensus 660 L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~ 737 (784)
|++|. ++...+..+.++++|+.|++++|.+ . ...+..+.++++|+.|+|++|... .+|. +..+++|+.|+
T Consensus 225 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 225 MSGNH-FPEIRPGSFHGLSSLKKLWVMNSQV--S-LIERNAFDGLASLVELNLAHNNLS----SLPHDLFTPLRYLVELH 296 (452)
T ss_dssp CTTSC-CSEECGGGGTTCTTCCEEECTTSCC--C-EECTTTTTTCTTCCEEECCSSCCS----CCCTTSSTTCTTCCEEE
T ss_pred CcCCc-CcccCcccccCccCCCEEEeCCCcC--c-eECHHHhcCCCCCCEEECCCCcCC----ccChHHhccccCCCEEE
Confidence 99987 6666666778999999999999976 4 444566888999999999998766 4454 78899999999
Q ss_pred ecCCC
Q 003957 738 ITKCK 742 (784)
Q Consensus 738 is~C~ 742 (784)
+++|+
T Consensus 297 L~~Np 301 (452)
T 3zyi_A 297 LHHNP 301 (452)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 99986
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-14 Score=165.45 Aligned_cols=248 Identities=18% Similarity=0.101 Sum_probs=161.6
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT 422 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~ 422 (784)
++|+.|++++|.++. +|. .+++|++|+|++|..-. ++ ..+++|+.|++++|
T Consensus 61 ~~L~~L~L~~N~l~~--------------------lp~---~l~~L~~L~Ls~N~l~~---lp---~~l~~L~~L~Ls~N 111 (622)
T 3g06_A 61 AHITTLVIPDNNLTS--------------------LPA---LPPELRTLEVSGNQLTS---LP---VLPPGLLELSIFSN 111 (622)
T ss_dssp TTCSEEEECSCCCSC--------------------CCC---CCTTCCEEEECSCCCSC---CC---CCCTTCCEEEECSC
T ss_pred CCCcEEEecCCCCCC--------------------CCC---cCCCCCEEEcCCCcCCc---CC---CCCCCCCEEECcCC
Confidence 567777777776654 232 45677777777765321 11 15677777877777
Q ss_pred cCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCC
Q 003957 423 QLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRK 502 (784)
Q Consensus 423 ~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 502 (784)
.++.... ..++|+.|++++|.++... ..+++|++|++++| .++..+
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N~l~~lp-----~~l~~L~~L~Ls~N-~l~~l~------------------------- 157 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGNQLTSLP-----VLPPGLQELSVSDN-QLASLP------------------------- 157 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSS-CCSCCC-------------------------
T ss_pred cCCCCCC---CCCCcCEEECCCCCCCcCC-----CCCCCCCEEECcCC-cCCCcC-------------------------
Confidence 6665332 2467888888888765422 23478888888776 222110
Q ss_pred ccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEE
Q 003957 503 LEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLA 582 (784)
Q Consensus 503 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~ 582 (784)
....+|+.|+++++ .++. ++..+++|+.|+++.|.++.. ....++|+.|+
T Consensus 158 -------------------~~~~~L~~L~L~~N-~l~~-----l~~~~~~L~~L~Ls~N~l~~l-----~~~~~~L~~L~ 207 (622)
T 3g06_A 158 -------------------ALPSELCKLWAYNN-QLTS-----LPMLPSGLQELSVSDNQLASL-----PTLPSELYKLW 207 (622)
T ss_dssp -------------------CCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCCSCC-----CCCCTTCCEEE
T ss_pred -------------------CccCCCCEEECCCC-CCCC-----CcccCCCCcEEECCCCCCCCC-----CCccchhhEEE
Confidence 01234555555554 2221 224467888888887777652 12357899999
Q ss_pred ecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecC
Q 003957 583 ICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEE 662 (784)
Q Consensus 583 Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~ 662 (784)
+++|... .+...+++|++|++++ +.++... ..+++|+.|++++|.+.. +...+++|+.|+|++
T Consensus 208 L~~N~l~----~l~~~~~~L~~L~Ls~--N~L~~lp-----~~l~~L~~L~Ls~N~L~~------lp~~~~~L~~L~Ls~ 270 (622)
T 3g06_A 208 AYNNRLT----SLPALPSGLKELIVSG--NRLTSLP-----VLPSELKELMVSGNRLTS------LPMLPSGLLSLSVYR 270 (622)
T ss_dssp CCSSCCS----SCCCCCTTCCEEECCS--SCCSCCC-----CCCTTCCEEECCSSCCSC------CCCCCTTCCEEECCS
T ss_pred CcCCccc----ccCCCCCCCCEEEccC--CccCcCC-----CCCCcCcEEECCCCCCCc------CCcccccCcEEeCCC
Confidence 9998321 1223458999999999 4676422 567899999999997764 112578999999999
Q ss_pred CCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCC
Q 003957 663 CGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMP 705 (784)
Q Consensus 663 c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~ 705 (784)
|. ++.. +..+.++++|+.|+|++|.+ . ...+..+..++
T Consensus 271 N~-L~~l-p~~l~~l~~L~~L~L~~N~l--~-~~~~~~l~~L~ 308 (622)
T 3g06_A 271 NQ-LTRL-PESLIHLSSETTVNLEGNPL--S-ERTLQALREIT 308 (622)
T ss_dssp SC-CCSC-CGGGGGSCTTCEEECCSCCC--C-HHHHHHHHHHH
T ss_pred CC-CCcC-CHHHhhccccCEEEecCCCC--C-CcCHHHHHhcc
Confidence 87 6532 34577899999999999976 6 66666665543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-15 Score=161.68 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=40.5
Q ss_pred CCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCC
Q 003957 652 WPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADR 730 (784)
Q Consensus 652 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~ 730 (784)
+++|+.|++++|. ++...+..+.++++|+.|++++|.+ . ......+..+++|+.|++++|.... . .|. +..+
T Consensus 174 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l--~-~~~~~~~~~l~~L~~L~L~~N~l~~-~--~~~~~~~~ 246 (306)
T 2z66_A 174 LRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNF--F-SLDTFPYKCLNSLQVLDYSLNHIMT-S--KKQELQHF 246 (306)
T ss_dssp CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCC--S-BCCSGGGTTCTTCCEEECTTSCCCB-C--SSSSCCCC
T ss_pred CcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCcc--C-ccChhhccCcccCCEeECCCCCCcc-c--CHHHHHhh
Confidence 4445555555443 3333233344555555666655543 2 1112234555666666666554441 1 122 4444
Q ss_pred -CCCCEEEecCCCC
Q 003957 731 -YSLSTVKITKCKS 743 (784)
Q Consensus 731 -~~L~~L~is~C~~ 743 (784)
++|++|++++|+.
T Consensus 247 ~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 247 PSSLAFLNLTQNDF 260 (306)
T ss_dssp CTTCCEEECTTCCE
T ss_pred hccCCEEEccCCCe
Confidence 3666666666654
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.4e-15 Score=163.59 Aligned_cols=224 Identities=14% Similarity=0.093 Sum_probs=162.1
Q ss_pred CCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCc
Q 003957 501 RKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQ 579 (784)
Q Consensus 501 ~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~ 579 (784)
+.++.|++ ++.+..+... .+..+++|+.|+++++ .+.......+. .+++|++|+++.|.++... ...+.++++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n-~i~~i~~~~~~-~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRN-HIRTIEIGAFN-GLANLNTLELFDNRLTTIP-NGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSS-CCCEECGGGGT-TCSSCCEEECCSSCCSSCC-TTTSCSCSSCC
T ss_pred CCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCC-cCCccChhhcc-CCccCCEEECCCCcCCeeC-HhHhhccccCc
Confidence 46888999 4455554443 4667889999999988 33332222333 3788999999888877532 22467789999
Q ss_pred EEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEe
Q 003957 580 VLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLH 659 (784)
Q Consensus 580 ~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~ 659 (784)
+|++++|............+++|++|++++| +.++.... ..+.++++|++|++++|.+..-. . ...+++|+.|+
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~-~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~---~-~~~l~~L~~L~ 213 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGEL-KRLSYISE-GAFEGLSNLRYLNLAMCNLREIP---N-LTPLIKLDELD 213 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCC-TTCCEECT-TTTTTCSSCCEEECTTSCCSSCC---C-CTTCSSCCEEE
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCC-CCcceeCc-chhhcccccCeecCCCCcCcccc---c-cCCCcccCEEE
Confidence 9999998322222233446699999999987 45543221 23457889999999999776421 1 24688999999
Q ss_pred ecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEE
Q 003957 660 LEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVK 737 (784)
Q Consensus 660 L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~ 737 (784)
|++|. ++...+..+.++++|+.|++++|.+ . ...+..+..+++|+.|+|++|... .+|. +..+++|+.|+
T Consensus 214 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 214 LSGNH-LSAIRPGSFQGLMHLQKLWMIQSQI--Q-VIERNAFDNLQSLVEINLAHNNLT----LLPHDLFTPLHHLERIH 285 (440)
T ss_dssp CTTSC-CCEECTTTTTTCTTCCEEECTTCCC--C-EECTTSSTTCTTCCEEECTTSCCC----CCCTTTTSSCTTCCEEE
T ss_pred CCCCc-cCccChhhhccCccCCEEECCCCce--e-EEChhhhcCCCCCCEEECCCCCCC----ccChhHhccccCCCEEE
Confidence 99986 7666566777899999999999975 4 444566888999999999998766 3454 78899999999
Q ss_pred ecCCC
Q 003957 738 ITKCK 742 (784)
Q Consensus 738 is~C~ 742 (784)
+++|+
T Consensus 286 L~~Np 290 (440)
T 3zyj_A 286 LHHNP 290 (440)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 99976
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.4e-15 Score=164.90 Aligned_cols=242 Identities=16% Similarity=0.074 Sum_probs=156.8
Q ss_pred hCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCC
Q 003957 410 QARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSY 488 (784)
Q Consensus 410 ~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~ 488 (784)
.+++|+.|++++|.+++.....|. .++|++|+|++|.+++... +..+++|++|++++| .++..
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N-~l~~l------------ 95 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNN-YVQEL------------ 95 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSS-EEEEE------------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCC-cCCCC------------
Confidence 345788888888887776666665 5788888888887654332 467788888888776 22221
Q ss_pred CchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHH
Q 003957 489 PCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSII 568 (784)
Q Consensus 489 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l 568 (784)
.. .++|+.|++++|. ++.. ....+++|+.|+++.|.+++..
T Consensus 96 ---------~~------------------------~~~L~~L~L~~N~-l~~~----~~~~l~~L~~L~L~~N~l~~~~- 136 (487)
T 3oja_A 96 ---------LV------------------------GPSIETLHAANNN-ISRV----SCSRGQGKKNIYLANNKITMLR- 136 (487)
T ss_dssp ---------EE------------------------CTTCCEEECCSSC-CCCE----EECCCSSCEEEECCSSCCCSGG-
T ss_pred ---------CC------------------------CCCcCEEECcCCc-CCCC----CccccCCCCEEECCCCCCCCCC-
Confidence 11 1345555555541 2111 0123566777777776666532
Q ss_pred HHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHH
Q 003957 569 INILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLI 647 (784)
Q Consensus 569 ~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~ 647 (784)
+..+.++++|+.|++++| +.+..+..+...+++|++|+++++ .++... . ...+++|+.|++++|.+.... ..
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N--~l~~~~--~-~~~l~~L~~L~Ls~N~l~~~~--~~ 209 (487)
T 3oja_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN--FIYDVK--G-QVVFAKLKTLDLSSNKLAFMG--PE 209 (487)
T ss_dssp GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS--CCCEEE--C-CCCCTTCCEEECCSSCCCEEC--GG
T ss_pred chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC--cccccc--c-cccCCCCCEEECCCCCCCCCC--Hh
Confidence 223456778888888888 444445555545688888888884 565431 1 124778999999998765421 11
Q ss_pred HHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 648 ISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 648 ~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
...+++|+.|+|++|. ++. .+..+..+++|+.|++++|.+ ....++..+..++.|+.+.+..+...
T Consensus 210 -~~~l~~L~~L~Ls~N~-l~~-lp~~l~~l~~L~~L~l~~N~l--~c~~~~~~~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 210 -FQSAAGVTWISLRNNK-LVL-IEKALRFSQNLEHFDLRGNGF--HCGTLRDFFSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp -GGGGTTCSEEECTTSC-CCE-ECTTCCCCTTCCEEECTTCCB--CHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HcCCCCccEEEecCCc-Ccc-cchhhccCCCCCEEEcCCCCC--cCcchHHHHHhCCCCcEEeccccccc
Confidence 3467889999999877 553 223355789999999999976 43477788888999999988754443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.4e-15 Score=165.36 Aligned_cols=130 Identities=19% Similarity=0.182 Sum_probs=69.9
Q ss_pred CCCCcEEEeee-eccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCC
Q 003957 550 CPMLELVVLYF-QVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCS 627 (784)
Q Consensus 550 ~~~L~~L~L~~-~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~ 627 (784)
+++|+.|+++. +.++.. ....+.++++|++|++++|. ... .. ...+++|++|++++ +.++.... ..+.+++
T Consensus 159 l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~Ls~--N~l~~~~~-~~~~~l~ 231 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYI-SEGAFEGLSNLRYLNLAMCNLREI--PN-LTPLIKLDELDLSG--NHLSAIRP-GSFQGLM 231 (440)
T ss_dssp CTTCCEEECCCCTTCCEE-CTTTTTTCSSCCEEECTTSCCSSC--CC-CTTCSSCCEEECTT--SCCCEECT-TTTTTCT
T ss_pred CcccCEeCCCCCCCccee-CcchhhcccccCeecCCCCcCccc--cc-cCCCcccCEEECCC--CccCccCh-hhhccCc
Confidence 67788888854 444332 12235667778888877772 211 11 23446677777776 34543211 2234566
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNG 689 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~ 689 (784)
+|+.|++++|.+.... .....++++|+.|+|++|. ++......+..+++|+.|+|++|.
T Consensus 232 ~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 232 HLQKLWMIQSQIQVIE--RNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTCCCCEEC--TTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCCEEECCCCceeEEC--hhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 6777777666544311 1112345666666666654 443333344456666666666654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-15 Score=165.35 Aligned_cols=130 Identities=19% Similarity=0.174 Sum_probs=69.9
Q ss_pred CCCCcEEEeee-eccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCC
Q 003957 550 CPMLELVVLYF-QVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCS 627 (784)
Q Consensus 550 ~~~L~~L~L~~-~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~ 627 (784)
+++|+.|+++. +.++.. ....+.++++|+.|++++|. .+. .. ...+++|++|++++ +.++.... ..+.+++
T Consensus 170 l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~Ls~--N~l~~~~~-~~~~~l~ 242 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYI-SEGAFEGLFNLKYLNLGMCNIKDM--PN-LTPLVGLEELEMSG--NHFPEIRP-GSFHGLS 242 (452)
T ss_dssp CTTCCEEECCCCTTCCEE-CTTTTTTCTTCCEEECTTSCCSSC--CC-CTTCTTCCEEECTT--SCCSEECG-GGGTTCT
T ss_pred CCcccEEeCCCCCCcccc-ChhhccCCCCCCEEECCCCccccc--cc-ccccccccEEECcC--CcCcccCc-ccccCcc
Confidence 67788888853 444332 12235567777777777772 211 11 23446677777776 34543221 2234566
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNG 689 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~ 689 (784)
+|+.|++++|.+.... .....++++|+.|+|++|. ++......+..+++|+.|+|++|.
T Consensus 243 ~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 243 SLKKLWVMNSQVSLIE--RNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCcCceEC--HHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 6777777766554311 1112346666777776664 443333334456666666666654
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-14 Score=154.84 Aligned_cols=128 Identities=22% Similarity=0.119 Sum_probs=85.3
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEec
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLS 420 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls 420 (784)
++++|+.|++++|.++. +|..+..+++|++|++++|.... ++..+..+++|+.|+++
T Consensus 181 ~l~~L~~L~L~~n~l~~--------------------lp~~l~~l~~L~~L~L~~N~l~~---l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIRS--------------------LPASIANLQNLKSLKIRNSPLSA---LGPAIHHLPKLEELDLR 237 (328)
T ss_dssp ESTTCCEEEEEEECCCC--------------------CCGGGGGCTTCCEEEEESSCCCC---CCGGGGGCTTCCEEECT
T ss_pred cCCCCCEEECcCCCcCc--------------------chHhhcCCCCCCEEEccCCCCCc---CchhhccCCCCCEEECc
Confidence 46788888888887764 45555778888888888876532 11123677888888888
Q ss_pred CCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhc
Q 003957 421 GTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGR 499 (784)
Q Consensus 421 ~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 499 (784)
+|.+.......+. .++|++|++++|.+....... +..+++|++|++++|..... ++..+..
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~-----------------iP~~l~~ 299 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSR-----------------LPSLIAQ 299 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCTTCCC-----------------CCGGGGG
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCCCCchhh-----------------ccHHHhh
Confidence 8776665555554 578888888887554433222 36778888888888765432 2345666
Q ss_pred CCCccEEEec
Q 003957 500 TRKLEEIVLG 509 (784)
Q Consensus 500 l~~L~~L~L~ 509 (784)
+++|+.+.+.
T Consensus 300 L~~L~~l~l~ 309 (328)
T 4fcg_A 300 LPANCIILVP 309 (328)
T ss_dssp SCTTCEEECC
T ss_pred ccCceEEeCC
Confidence 6666666663
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.1e-15 Score=154.42 Aligned_cols=231 Identities=16% Similarity=0.046 Sum_probs=128.3
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccc-hhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKR-NFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSG 421 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~-~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~ 421 (784)
++|+.|++++|.++. +| ..+..+++|++|++++|..-...........+++|+.|++++
T Consensus 28 ~~l~~L~L~~n~l~~--------------------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 28 SSATRLELESNKLQS--------------------LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TTCCEEECCSSCCCC--------------------CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CCCCEEECCCCccCc--------------------cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 467777777776654 22 234678899999998876421110011124688899999998
Q ss_pred CcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcC
Q 003957 422 TQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRT 500 (784)
Q Consensus 422 ~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 500 (784)
|.++..... +. .++|++|++++|.++.......+..+++|++|+++++.. .... ...+..+
T Consensus 88 n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~----------------~~~~~~l 149 (306)
T 2z66_A 88 NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAF----------------NGIFNGL 149 (306)
T ss_dssp CSEEEEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EECS----------------TTTTTTC
T ss_pred CccccChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC-Cccc----------------hhhcccC
Confidence 877643322 33 578888888888766544323346778888888877632 2111 1133445
Q ss_pred CCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCc
Q 003957 501 RKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQ 579 (784)
Q Consensus 501 ~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~ 579 (784)
++|++|+++ +.+........+.. +++|+.|+++.+.+++.. ...+..+++|+
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~--------------------------l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~ 202 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTE--------------------------LRNLTFLDLSQCQLEQLS-PTAFNSLSSLQ 202 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTT--------------------------CTTCCEEECTTSCCCEEC-TTTTTTCTTCC
T ss_pred cCCCEEECCCCccccccchhHHhh--------------------------CcCCCEEECCCCCcCCcC-HHHhcCCCCCC
Confidence 556666663 22222111122233 445555555544444321 22344566677
Q ss_pred EEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcC-CCCcEEEecCCCCCCh
Q 003957 580 VLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNC-SELVELSLVGCTLLSS 642 (784)
Q Consensus 580 ~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~-~~L~~L~Ls~c~~~~~ 642 (784)
+|++++| +.+..... ...+++|++|+++++ .++......+ ..+ ++|+.|++++|+...+
T Consensus 203 ~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N--~l~~~~~~~~-~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 203 VLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLN--HIMTSKKQEL-QHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp EEECTTSCCSBCCSGG-GTTCTTCCEEECTTS--CCCBCSSSSC-CCCCTTCCEEECTTCCEECS
T ss_pred EEECCCCccCccChhh-ccCcccCCEeECCCC--CCcccCHHHH-HhhhccCCEEEccCCCeecc
Confidence 7777666 22211111 234577777777773 4543322222 233 4788888888876543
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.3e-14 Score=147.35 Aligned_cols=231 Identities=15% Similarity=0.032 Sum_probs=142.0
Q ss_pred CCccEEEec-cccCcccHhhhhh--hcCcccEEEecCCCCCChHHHHHhh-ccCCCCcEEEeeeeccChHHH---HHHHh
Q 003957 501 RKLEEIVLG-WGFSFLSLEVLKP--AIKLLHSITVGLGGSLGEDALRLLP-TTCPMLELVVLYFQVMSDSII---INILE 573 (784)
Q Consensus 501 ~~L~~L~L~-~~~~~~~~~~~~~--~l~~L~~L~L~~~~~l~~~~l~~l~-~~~~~L~~L~L~~~~i~~~~l---~~~~~ 573 (784)
..++.+.+. ..++......+.. .+++|+.|+++++. +.......+. ..+++|++|+++.|.+++... ...+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 456677773 3333322222222 24568888888873 2222111221 346788888888887775211 12233
Q ss_pred hCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCCh-HHHHH--HHhcCCCCcEEEecCCCCCChHHH-HHHH
Q 003957 574 SLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTN-NDLVI--LTQNCSELVELSLVGCTLLSSDSQ-LIIS 649 (784)
Q Consensus 574 ~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~-~~l~~--l~~~~~~L~~L~Ls~c~~~~~~~~-~~~~ 649 (784)
.+++|++|++++|............+++|++|+++++ .+.. .++.. ....+++|++|++++|....-... ..+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDN--PGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSC--TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCC--CCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 6888899999888322222223345688999999884 4443 23321 124678899999998877542221 2234
Q ss_pred hcCCCCcEEeecCCCCCCHHHHHHhhC---CCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc
Q 003957 650 QGWPGLISLHLEECGDITAYGVTSLFN---CIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD 726 (784)
Q Consensus 650 ~~~~~L~~L~L~~c~~i~~~~~~~l~~---~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~ 726 (784)
.++++|+.|+|++|. ++...+..+.. +++|+.|++++|.+ ..++..+ .++|+.|++++|... ++|.
T Consensus 221 ~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l----~~lp~~~--~~~L~~L~Ls~N~l~----~~~~ 289 (310)
T 4glp_A 221 AAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGL----EQVPKGL--PAKLRVLDLSSNRLN----RAPQ 289 (310)
T ss_dssp HHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCC----CSCCSCC--CSCCSCEECCSCCCC----SCCC
T ss_pred hcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCC----Cchhhhh--cCCCCEEECCCCcCC----CCch
Confidence 567889999998877 55433333433 37899999999876 3344333 378999999888766 3455
Q ss_pred ccCCCCCCEEEecCCCCcC
Q 003957 727 YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 727 ~~~~~~L~~L~is~C~~~~ 745 (784)
+..+++|+.|++++|+..+
T Consensus 290 ~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTSCCCCSCEECSSTTTSC
T ss_pred hhhCCCccEEECcCCCCCC
Confidence 6777889999998887654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=4e-13 Score=141.85 Aligned_cols=189 Identities=19% Similarity=0.139 Sum_probs=111.8
Q ss_pred cCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCc
Q 003957 524 IKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNL 602 (784)
Q Consensus 524 l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L 602 (784)
+++|+.|+++++. +.. +..+. .+++|+.|+++.+.+++... +..+++|++|++++| +.+. .. ...+++|
T Consensus 40 l~~L~~L~l~~~~-i~~--l~~~~-~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L 109 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTT--IEGVQ-YLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNV--SA-IAGLQSI 109 (308)
T ss_dssp HHTCCEEECTTSC-CCC--CTTGG-GCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCC--GG-GTTCTTC
T ss_pred cCCcCEEEeeCCC-ccC--chhhh-ccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCc--hh-hcCCCCC
Confidence 4456666666552 221 11222 25667777776666655322 566677777777776 2221 12 2345777
Q ss_pred cEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCE
Q 003957 603 RKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALED 682 (784)
Q Consensus 603 ~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~ 682 (784)
++|++++| .++... . +..+++|++|++++|....... ...+++|+.|++++|. ++.... +..+++|+.
T Consensus 110 ~~L~l~~n--~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~ 177 (308)
T 1h6u_A 110 KTLDLTST--QITDVT--P-LAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTT 177 (308)
T ss_dssp CEEECTTS--CCCCCG--G-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCE
T ss_pred CEEECCCC--CCCCch--h-hcCCCCCCEEECCCCccCcCcc----ccCCCCccEEEccCCc-CCCChh--hcCCCCCCE
Confidence 77777774 454422 1 4566777777777776554221 3457777777777765 443222 556777777
Q ss_pred EEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCEEEecCCCC
Q 003957 683 LLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKS 743 (784)
Q Consensus 683 L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~ 743 (784)
|++++|.+ . .++. +..+++|+.|++++|... .++++..+++|+.|++++|+.
T Consensus 178 L~l~~n~l--~--~~~~-l~~l~~L~~L~L~~N~l~----~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 178 LKADDNKI--S--DISP-LASLPNLIEVHLKNNQIS----DVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp EECCSSCC--C--CCGG-GGGCTTCCEEECTTSCCC----BCGGGTTCTTCCEEEEEEEEE
T ss_pred EECCCCcc--C--cChh-hcCCCCCCEEEccCCccC----ccccccCCCCCCEEEccCCee
Confidence 77777755 2 2222 667777777777777655 334466777777777777764
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-14 Score=153.53 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=89.8
Q ss_pred CCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCc----cCHHHHHHH--HHhCCCCCEEEeeCCCCCHHHHH
Q 003957 288 PSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVS----VTDVCISNL--IRRCVKLQSIIVCDTSFGVYSIR 361 (784)
Q Consensus 288 ~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~----l~~~~l~~l--~~~~~~L~~L~Ls~~~i~~~~l~ 361 (784)
+..++|++|++++|.. .. ...+.. .|++|+++++.. +........ ..++++|++|++++|.++..
T Consensus 40 ~~~~~L~~l~l~~n~l-~~--p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--- 110 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-AD--LGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT--- 110 (312)
T ss_dssp EEEEECTTHHHHCCTT-CC--CHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC---
T ss_pred ccCCCceeEeeccccc-cc--HHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch---
Confidence 3446788888888765 22 122222 266666666432 122111111 12578999999999887641
Q ss_pred HhhccCCccCcccccccchhh--hcCCCccEEEecCCCCCCH-HHHHHHH-HhCccccEEEecCCcCchhhhhhcc-cCC
Q 003957 362 ALCSEVPYCNSSALCGKRNFN--TLASNLQMLHMACCNGVDG-MYLLELM-CQARKLKSLCLSGTQLADKALYNFS-GSS 436 (784)
Q Consensus 362 ~l~~~l~~~~~~~~~~~~~~~--~~l~~L~~L~L~~c~~l~~-~~l~~l~-~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~ 436 (784)
.|..+ ..+++|++|++++|..... ..+..+. ...++|+.|++++|.++......|. .++
T Consensus 111 ----------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 111 ----------------APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp ----------------CCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred ----------------hHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 23322 6788899999988764321 1111110 0127888888888877766655555 567
Q ss_pred cCEEEecCCccchh-hHHHHH--hcCCCccEEeccCC
Q 003957 437 LEMLDVSDTMISGA-ALAYMV--HGNSGLKYLNARGC 470 (784)
Q Consensus 437 L~~L~Ls~~~i~~~-~l~~~~--~~l~~L~~L~L~~c 470 (784)
|++|++++|.+.+. ...... ..+++|++|+++++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence 77777777765432 121111 45566666666554
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-14 Score=148.65 Aligned_cols=181 Identities=18% Similarity=0.102 Sum_probs=113.3
Q ss_pred CCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCC
Q 003957 550 CPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSE 628 (784)
Q Consensus 550 ~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~ 628 (784)
+++|++|+++.+.+++.. ...+.++++|++|++++|. ...........+++|++|+++++ .++... ...+.++++
T Consensus 55 ~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~-~~~~~~l~~ 130 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC--GLQELG-PGLFRGLAA 130 (285)
T ss_dssp CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS--CCCCCC-TTTTTTCTT
T ss_pred CCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC--cCCEEC-HhHhhCCcC
Confidence 566666666655555421 2234566777777777762 22221222334577777777774 444321 122345778
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCc
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLR 708 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~ 708 (784)
|++|++++|...... .....++++|+.|++++|. ++......+.++++|+.|++++|.+ . ...+..+..+++|+
T Consensus 131 L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l--~-~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 131 LQYLYLQDNALQALP--DDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRV--A-HVHPHAFRDLGRLM 204 (285)
T ss_dssp CCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC--C-EECTTTTTTCTTCC
T ss_pred CCEEECCCCcccccC--HhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcc--c-ccCHhHccCccccc
Confidence 888888887665311 1122457788888888875 5544444466788888888888865 4 44456677788888
Q ss_pred eeccccccccCCCCCccc--ccCCCCCCEEEecCCCCc
Q 003957 709 LVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 709 ~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~ 744 (784)
.|++++|... .++. +..+++|++|++++|+..
T Consensus 205 ~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 205 TLYLFANNLS----ALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EEECCSSCCS----CCCHHHHTTCTTCCEEECCSSCEE
T ss_pred EeeCCCCcCC----cCCHHHcccCcccCEEeccCCCcc
Confidence 8888887665 3343 777888888888888754
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-13 Score=156.10 Aligned_cols=170 Identities=12% Similarity=0.090 Sum_probs=90.2
Q ss_pred hhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCC
Q 003957 382 NTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSG 461 (784)
Q Consensus 382 ~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~ 461 (784)
+..+++|+.|+|++|....... +..+++|+.|++++|.+++... .++|++|++++|.++.... ..+++
T Consensus 54 ~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~----~~l~~ 121 (487)
T 3oja_A 54 LAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC----SRGQG 121 (487)
T ss_dssp GTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCCCEEE----CCCSS
T ss_pred HhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCCcCCCCCc----cccCC
Confidence 3556666666666655321111 2556666777776665554321 3667777777776654332 23566
Q ss_pred ccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCCh
Q 003957 462 LKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGE 540 (784)
Q Consensus 462 L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~ 540 (784)
|++|++++|. ++... ...++.+++|+.|++ ++.++......+...+++|+.|++++|. ++.
T Consensus 122 L~~L~L~~N~-l~~~~----------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~ 183 (487)
T 3oja_A 122 KKNIYLANNK-ITMLR----------------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD 183 (487)
T ss_dssp CEEEECCSSC-CCSGG----------------GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred CCEEECCCCC-CCCCC----------------chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccc
Confidence 7777776653 22111 113344566666666 3344444444444456677777777662 222
Q ss_pred HHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc
Q 003957 541 DALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC 586 (784)
Q Consensus 541 ~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c 586 (784)
. .... .+++|+.|+++.|.+++. +..+..+++|+.|++++|
T Consensus 184 ~--~~~~-~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 184 V--KGQV-VFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp E--ECCC-CCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTS
T ss_pred c--cccc-cCCCCCEEECCCCCCCCC--CHhHcCCCCccEEEecCC
Confidence 1 1111 256666666666666542 112445566666666666
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.7e-13 Score=138.05 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=30.9
Q ss_pred CCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCC
Q 003957 599 LPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECG 664 (784)
Q Consensus 599 ~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~ 664 (784)
+++|++|+++++ .++.... ..+..+++|+.|++++|..... .......+++|+.|++++|+
T Consensus 176 l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 176 LHSLDRLLLHQN--RVAHVHP-HAFRDLGRLMTLYLFANNLSAL--PTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTCCEEECCSS--CCCEECT-TTTTTCTTCCEEECCSSCCSCC--CHHHHTTCTTCCEEECCSSC
T ss_pred ccccCEEECCCC--cccccCH-hHccCcccccEeeCCCCcCCcC--CHHHcccCcccCEEeccCCC
Confidence 355555555552 3433211 1223456666666666655441 12223456667777776665
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-12 Score=136.16 Aligned_cols=160 Identities=17% Similarity=0.155 Sum_probs=96.8
Q ss_pred CCCccEEEecCCCCCCHHHHHHHH--HhCccccEEEecCCcCchhhhhhc--c-cCCcCEEEecCCccchhhH---HHHH
Q 003957 385 ASNLQMLHMACCNGVDGMYLLELM--CQARKLKSLCLSGTQLADKALYNF--S-GSSLEMLDVSDTMISGAAL---AYMV 456 (784)
Q Consensus 385 l~~L~~L~L~~c~~l~~~~l~~l~--~~~~~L~~L~Ls~~~l~~~~~~~l--~-~~~L~~L~Ls~~~i~~~~l---~~~~ 456 (784)
...++.+.+.++.. ++..+..+. ...++|+.|++++|.+++.....+ . .++|++|++++|.++.... ....
T Consensus 63 ~~~l~~l~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQV-PAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCCC-BHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCcC-CHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 34678899988754 455544432 345779999999999887776665 3 6899999999998775211 1122
Q ss_pred hcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCC
Q 003957 457 HGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGG 536 (784)
Q Consensus 457 ~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 536 (784)
..+++|++|++++|.. ..... ..+..+++|++|+++++.
T Consensus 142 ~~~~~L~~L~Ls~n~l-~~~~~----------------------------------------~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHS-PAFSC----------------------------------------EQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp TBCSCCCEEEEECCSS-CCCCT----------------------------------------TSCCCCTTCCEEECCSCT
T ss_pred hhccCCCEEEeeCCCc-chhhH----------------------------------------HHhccCCCCCEEECCCCC
Confidence 3678888888877632 22110 012334556666666663
Q ss_pred CCChHHHHHh--hccCCCCcEEEeeeeccChH--HHHHHHhhCCCCcEEEeccc
Q 003957 537 SLGEDALRLL--PTTCPMLELVVLYFQVMSDS--IIINILESLRRLQVLAICHC 586 (784)
Q Consensus 537 ~l~~~~l~~l--~~~~~~L~~L~L~~~~i~~~--~l~~~~~~l~~L~~L~Ls~c 586 (784)
-.....+... ...+++|++|+++.|.++.. ....++.++++|++|++++|
T Consensus 181 l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 181 GLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp TCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred CccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 3322222111 12356777777776666532 12223566677777777777
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=129.99 Aligned_cols=57 Identities=9% Similarity=0.173 Sum_probs=33.8
Q ss_pred EeCcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccC
Q 003957 180 SFEAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVD 245 (784)
Q Consensus 180 ~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~ 245 (784)
.+++|++|++++|.-...+. ...+++|++|++++ +.+++... ...+++|++|+++.+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~-----~~~l~~L~~L~L~~-n~i~~~~~---~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKD-NQITDLAP---LKNLTKITELELSGN 95 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTT-----GGGCTTCCEEECCS-SCCCCCGG---GTTCCSCCEEECCSC
T ss_pred HcCCcCEEEeeCCCccCchh-----hhccCCCCEEEccC-CcCCCChh---HccCCCCCEEEccCC
Confidence 56777777777764333321 24567777777777 34443222 336777777777754
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.9e-13 Score=139.62 Aligned_cols=182 Identities=20% Similarity=0.134 Sum_probs=109.4
Q ss_pred CCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCC
Q 003957 550 CPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSE 628 (784)
Q Consensus 550 ~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~ 628 (784)
+++|++|+++.+.++... ...+.++++|++|++++|. ..... .....+++|++|+++++ .++..... .+..+++
T Consensus 51 l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n--~l~~~~~~-~~~~l~~ 125 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVET--NLASLENF-PIGHLKT 125 (276)
T ss_dssp CTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTS--CCCCSTTC-CCTTCTT
T ss_pred ccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccCh-hhhcCCccccEEECCCC--CccccCch-hcccCCC
Confidence 455666666555554321 1234566777777777772 22222 22234577777777774 34332111 1346778
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHh---hCCCCCC-EEEcccCCCCCChhHHHHHHhcC
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSL---FNCIALE-DLLLRHNGPGIPRDFILDAASKM 704 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l---~~~~~L~-~L~L~~n~~gl~~~~~~~~l~~l 704 (784)
|++|++++|...... ......++++|+.|++++|. ++......+ ..++.|. .|++++|.+ ..++......
T Consensus 126 L~~L~l~~n~l~~~~-l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n~l----~~~~~~~~~~ 199 (276)
T 2z62_A 126 LKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPM----NFIQPGAFKE 199 (276)
T ss_dssp CCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSSCC----CEECTTSSCS
T ss_pred CCEEECcCCccceec-CchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCCcc----cccCccccCC
Confidence 888888888764411 11123457888888888876 544332333 3444454 899999876 3333333345
Q ss_pred CCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCcCc
Q 003957 705 PMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~~~ 746 (784)
.+|+.|++++|... .+|. +..+++|++|++++|+....
T Consensus 200 ~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 200 IRLKELALDTNQLK----SVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCEEEEECCSSCCS----CCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CcccEEECCCCcee----ecCHhHhcccccccEEEccCCccccc
Confidence 58999999988755 3454 68889999999998875533
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-12 Score=135.18 Aligned_cols=178 Identities=16% Similarity=0.089 Sum_probs=108.2
Q ss_pred CCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcE
Q 003957 552 MLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVE 631 (784)
Q Consensus 552 ~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~ 631 (784)
++++|+++.+.++... ...+.++++|++|++++|........+...+++|++|+++++ .++.... ..+..+++|++
T Consensus 38 ~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~ 113 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN--KLQALPI-GVFDQLVNLAE 113 (270)
T ss_dssp TCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS--CCCCCCT-TTTTTCSSCCE
T ss_pred CCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC--cCCcCCH-hHcccccCCCE
Confidence 4566666555554321 112445666777777666221222223344577777777773 4443221 22345677888
Q ss_pred EEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceec
Q 003957 632 LSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVS 711 (784)
Q Consensus 632 L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~ 711 (784)
|++++|...... .....++++|+.|+|++|. ++......+..+++|+.|++++|.+ . ...+..+..+++|+.|+
T Consensus 114 L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 114 LRLDRNQLKSLP--PRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQL--K-RVPEGAFDKLTELKTLK 187 (270)
T ss_dssp EECCSSCCCCCC--TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--S-CCCTTTTTTCTTCCEEE
T ss_pred EECCCCccCeeC--HHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcC--c-EeChhHhccCCCcCEEE
Confidence 888877654411 1122457888888888876 5544444456788888888888865 3 33334467788888888
Q ss_pred cccccccCCCCCccc--ccCCCCCCEEEecCCCC
Q 003957 712 LDLCDASDGNFEIPD--YADRYSLSTVKITKCKS 743 (784)
Q Consensus 712 L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~ 743 (784)
+++|... .+|. +..+++|+.|++++|+-
T Consensus 188 L~~N~l~----~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 188 LDNNQLK----RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCSSCCS----CCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCcCC----cCCHHHhccccCCCEEEecCCCe
Confidence 8887655 3344 77788888888888774
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.24 E-value=9.7e-13 Score=137.54 Aligned_cols=175 Identities=20% Similarity=0.142 Sum_probs=109.2
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCC
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSEL 629 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L 629 (784)
++++.|+++.|.++... ...+.++++|+.|++++| +..... ...+++|++|++++ +.++. +...+..+++|
T Consensus 31 ~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~--N~l~~--l~~~~~~l~~L 102 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSH--NQLQS--LPLLGQTLPAL 102 (290)
T ss_dssp TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCS--SCCSS--CCCCTTTCTTC
T ss_pred CCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCC--CcCCc--CchhhccCCCC
Confidence 34566666555554321 123455667777777766 221111 13457777777777 34542 22233467788
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCce
Q 003957 630 VELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRL 709 (784)
Q Consensus 630 ~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~ 709 (784)
++|++++|.+..- ......++++|+.|+|++|. ++......+..+++|+.|++++|.+ . ......+..+++|+.
T Consensus 103 ~~L~l~~N~l~~l--~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l--~-~l~~~~~~~l~~L~~ 176 (290)
T 1p9a_G 103 TVLDVSFNRLTSL--PLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNL--T-ELPAGLLNGLENLDT 176 (290)
T ss_dssp CEEECCSSCCCCC--CSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCC--S-CCCTTTTTTCTTCCE
T ss_pred CEEECCCCcCccc--CHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcC--C-ccCHHHhcCcCCCCE
Confidence 8888888776541 11123457888888888876 5544344455788888888888865 3 333344677888888
Q ss_pred eccccccccCCCCCccc-ccCCCCCCEEEecCCCC
Q 003957 710 VSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKS 743 (784)
Q Consensus 710 L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~ 743 (784)
|++++|... .+|. +....+|+.|++++|+-
T Consensus 177 L~L~~N~l~----~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 177 LLLQENSLY----TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECCSSCCC----CCCTTTTTTCCCSEEECCSCCB
T ss_pred EECCCCcCC----ccChhhcccccCCeEEeCCCCc
Confidence 888887766 5676 66777888888888764
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=7.1e-12 Score=129.99 Aligned_cols=112 Identities=15% Similarity=0.062 Sum_probs=74.2
Q ss_pred HhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCC--HHHHHHHHHhCcccc-E
Q 003957 340 RRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVD--GMYLLELMCQARKLK-S 416 (784)
Q Consensus 340 ~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~--~~~l~~l~~~~~~L~-~ 416 (784)
.++++|++|++++|.++.. .+|..+..+++|++|++++|.... ...+..+ ..++.|. .
T Consensus 121 ~~l~~L~~L~l~~n~l~~~------------------~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~ 181 (276)
T 2z62_A 121 GHLKTLKELNVAHNLIQSF------------------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLS 181 (276)
T ss_dssp TTCTTCCEEECCSSCCCCC------------------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEE
T ss_pred ccCCCCCEEECcCCcccee------------------cCchhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhcccccee
Confidence 3567777777777766541 134445777888888888875421 1223222 3444444 8
Q ss_pred EEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCC
Q 003957 417 LCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCK 471 (784)
Q Consensus 417 L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~ 471 (784)
|++++|.++......+...+|++|++++|.++.... ..+..+++|++|+++++.
T Consensus 182 L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSSC
T ss_pred eecCCCcccccCccccCCCcccEEECCCCceeecCH-hHhcccccccEEEccCCc
Confidence 899998888776666666789999999998765433 233678899999998753
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.20 E-value=7.6e-12 Score=129.51 Aligned_cols=179 Identities=16% Similarity=0.069 Sum_probs=79.5
Q ss_pred hcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCc
Q 003957 523 AIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNL 602 (784)
Q Consensus 523 ~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L 602 (784)
.+.+|+.|+++++. +.. +..+.. +++|+.|+++.+.+++. ..+..+++|++|++++|............+++|
T Consensus 39 ~l~~L~~L~l~~~~-i~~--~~~l~~-l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKS--VQGIQY-LPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHTTCCEEECTTSC-CCC--CTTGGG-CTTCCEEECTTSCCCCC---GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccceeeeeeCCCC-ccc--cccccc-CCCCcEEECCCCCCCCc---hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 45567777776652 221 112222 56666666665555542 134455666666666652111111122234555
Q ss_pred cEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCE
Q 003957 603 RKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALED 682 (784)
Q Consensus 603 ~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~ 682 (784)
++|+++++ .++.... ..+..+++|++|++++|....- ......++++|+.|++++|. ++......+.++++|+.
T Consensus 112 ~~L~L~~n--~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 112 KELVLVEN--QLQSLPD-GVFDKLTNLTYLNLAHNQLQSL--PKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp CEEECTTS--CCCCCCT-TTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CEEECCCC--cCCccCH-HHhccCCCCCEEECCCCccCcc--CHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCE
Confidence 55555553 3332111 1123445555555555543321 11111234555555555543 33222222334555555
Q ss_pred EEcccCCCCCChhHHHHHHhcCCCCceeccccccc
Q 003957 683 LLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDA 717 (784)
Q Consensus 683 L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~ 717 (784)
|++++|.+ . ...+..+..+++|+.|++++|+.
T Consensus 186 L~L~~N~l--~-~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 186 LRLYQNQL--K-SVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp EECCSSCC--S-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCcC--C-ccCHHHHhCCcCCCEEEccCCCc
Confidence 55555543 2 22223344455555555555443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-12 Score=135.35 Aligned_cols=198 Identities=15% Similarity=0.079 Sum_probs=100.2
Q ss_pred hhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhC
Q 003957 497 LGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESL 575 (784)
Q Consensus 497 l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l 575 (784)
+..+++|+.|++. +.+.... .+..+++|+.|+++++. +.+ +..+.. +++|++|+++.+.+++. ....+.++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~---~l~~l~~L~~L~l~~n~-l~~--~~~l~~-l~~L~~L~L~~n~l~~~-~~~~~~~l 108 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNK-LHD--ISALKE-LTNLTYLILTGNQLQSL-PNGVFDKL 108 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT---TGGGCTTCCEEECTTSC-CCC--CGGGTT-CTTCCEEECTTSCCCCC-CTTTTTTC
T ss_pred cccccceeeeeeCCCCccccc---ccccCCCCcEEECCCCC-CCC--chhhcC-CCCCCEEECCCCccCcc-ChhHhcCC
Confidence 3445566666663 2332221 24456666666666652 222 122332 56666666665555542 12224556
Q ss_pred CCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCC
Q 003957 576 RRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGL 655 (784)
Q Consensus 576 ~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L 655 (784)
++|++|++++|............+++|++|++++| .++.... ..+..+++|++|++++|..... ......++++|
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L 183 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN--QLQSLPK-GVFDKLTNLTELDLSYNQLQSL--PEGVFDKLTQL 183 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCT-TTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC--ccCccCH-HHhccCccCCEEECCCCCcCcc--CHHHhcCCccC
Confidence 66666666666221222222234466666666663 3442111 1233556666666666654431 11122346666
Q ss_pred cEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 656 ISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 656 ~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+.|++++|. ++......+..+++|+.|++++|.+ . ..+++|+.|.++.|...
T Consensus 184 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~--~--------~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 184 KDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW--D--------CTCPGIRYLSEWINKHS 235 (272)
T ss_dssp CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB--C--------CCTTTTHHHHHHHHHTG
T ss_pred CEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCc--c--------ccCcHHHHHHHHHHhCC
Confidence 666666665 4433333345566666666666654 1 23566666666655444
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-11 Score=127.88 Aligned_cols=170 Identities=19% Similarity=0.142 Sum_probs=89.4
Q ss_pred hhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCC
Q 003957 522 PAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLP 600 (784)
Q Consensus 522 ~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~ 600 (784)
..+++|+.|+++++. +... ..+. .+++|+.|+++.+.+++... +..+++|+.|++++| +.+. .. ...++
T Consensus 43 ~~l~~L~~L~l~~~~-i~~~--~~~~-~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~--~~-l~~l~ 112 (291)
T 1h6t_A 43 NELNSIDQIIANNSD-IKSV--QGIQ-YLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDL--SS-LKDLK 112 (291)
T ss_dssp HHHHTCCEEECTTSC-CCCC--TTGG-GCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCG--GG-GTTCT
T ss_pred hhcCcccEEEccCCC-cccC--hhHh-cCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCC--hh-hccCC
Confidence 345677777777762 2211 1232 26667777776666665321 556667777777666 2221 11 23446
Q ss_pred CccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCC
Q 003957 601 NLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIAL 680 (784)
Q Consensus 601 ~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L 680 (784)
+|++|+++++ .+++. ..+..+++|+.|++++|....- .....+++|+.|++++|. ++.... +..+++|
T Consensus 113 ~L~~L~L~~n--~i~~~---~~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L 180 (291)
T 1h6t_A 113 KLKSLSLEHN--GISDI---NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKL 180 (291)
T ss_dssp TCCEEECTTS--CCCCC---GGGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTC
T ss_pred CCCEEECCCC--cCCCC---hhhcCCCCCCEEEccCCcCCcc----hhhccCCCCCEEEccCCc-cccchh--hcCCCcc
Confidence 6666666663 34432 1233456666666666655442 122345666666666654 333222 4456666
Q ss_pred CEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 681 EDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 681 ~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+.|++++|.+ + .++ .+..+++|+.|++++|+..
T Consensus 181 ~~L~L~~N~i--~--~l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 181 QNLYLSKNHI--S--DLR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CEEECCSSCC--C--BCG-GGTTCTTCSEEEEEEEEEE
T ss_pred CEEECCCCcC--C--CCh-hhccCCCCCEEECcCCccc
Confidence 6666666644 2 222 2555666666666665544
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-10 Score=123.99 Aligned_cols=163 Identities=16% Similarity=0.102 Sum_probs=104.9
Q ss_pred cCcccEEEecCCCCCChHHHHHhhc----cCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhh--
Q 003957 524 IKLLHSITVGLGGSLGEDALRLLPT----TCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFK-- 596 (784)
Q Consensus 524 l~~L~~L~L~~~~~l~~~~l~~l~~----~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~-- 596 (784)
.++|+.|++++| .+++.....+.. .+++|++|+++.|.+++.++..+...+++|++|++++| +++.....+.
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 346777777776 455555444433 23578888887777888777777777778888888887 4554444432
Q ss_pred --cCCCCccEEEccCCCCCCChHHHHHH---HhcCCCCcEEEecCCCCCChHHH--HHHHhcCCCCcEEeecCCCCCCHH
Q 003957 597 --LPLPNLRKLKLERVTPWMTNNDLVIL---TQNCSELVELSLVGCTLLSSDSQ--LIISQGWPGLISLHLEECGDITAY 669 (784)
Q Consensus 597 --~~~~~L~~L~L~~c~~~l~~~~l~~l---~~~~~~L~~L~Ls~c~~~~~~~~--~~~~~~~~~L~~L~L~~c~~i~~~ 669 (784)
...++|++|++++| .+++.+...+ ...+++|++|+|++|.+.+.+.. ......+++|+.|+|++|. +++.
T Consensus 150 L~~~~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~ 226 (372)
T 3un9_A 150 LLHDQCQITTLRLSNN--PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDT 226 (372)
T ss_dssp HHSTTCCCCEEECCSS--CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHH
T ss_pred HHhcCCccceeeCCCC--CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHH
Confidence 34567888888884 5776655443 24567788888888775433221 1122346678888887775 7776
Q ss_pred HHHHh----hCCCCCCEEEcccCCC
Q 003957 670 GVTSL----FNCIALEDLLLRHNGP 690 (784)
Q Consensus 670 ~~~~l----~~~~~L~~L~L~~n~~ 690 (784)
+...+ ..+++|++|+|++|.+
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCC
Confidence 65544 2467788888888754
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.1e-11 Score=117.49 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=66.1
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCC-CCCChhHHHHHHhc
Q 003957 625 NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNG-PGIPRDFILDAASK 703 (784)
Q Consensus 625 ~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~-~gl~~~~~~~~l~~ 703 (784)
.+++|++|++++|....... . ...++++|+.|++++|. ++...+..+..+++|+.|++++|. + + .++ .+..
T Consensus 86 ~l~~L~~L~l~~n~l~~~~~-~-~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i--~--~~~-~l~~ 157 (197)
T 4ezg_A 86 GLSNLERLRIMGKDVTSDKI-P-NLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAI--T--DIM-PLKT 157 (197)
T ss_dssp TCTTCCEEEEECTTCBGGGS-C-CCTTCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBC--C--CCG-GGGG
T ss_pred cCCCCCEEEeECCccCcccC-h-hhcCCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCc--c--ccH-hhcC
Confidence 45666666666665443111 1 11346777777777765 665556666677777777777775 4 2 222 4667
Q ss_pred CCCCceeccccccccCCCCCcccccCCCCCCEEEecCCCCc
Q 003957 704 MPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKSK 744 (784)
Q Consensus 704 l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~~ 744 (784)
+++|+.|++++|... .++.+..+++|++|++++++..
T Consensus 158 l~~L~~L~l~~n~i~----~~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 158 LPELKSLNIQFDGVH----DYRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSCCEEECTTBCCC----CCTTGGGCSSCCEEEECBC---
T ss_pred CCCCCEEECCCCCCc----ChHHhccCCCCCEEEeeCcccC
Confidence 777777777777655 3345667777888888777643
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-11 Score=123.89 Aligned_cols=150 Identities=9% Similarity=0.024 Sum_probs=94.6
Q ss_pred CCCEEEeeCCCCCHHHHHHhhccCCccCcccccccc-hhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecC-
Q 003957 344 KLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKR-NFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSG- 421 (784)
Q Consensus 344 ~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~-~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~- 421 (784)
+|+.|++++|.++. ++ ..+..+++|+.|++++|..++..... .+..+++|+.|++++
T Consensus 32 ~l~~L~l~~n~l~~--------------------i~~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~ 90 (239)
T 2xwt_C 32 STQTLKLIETHLRT--------------------IPSHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNT 90 (239)
T ss_dssp TCCEEEEESCCCSE--------------------ECTTTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEE
T ss_pred cccEEEEeCCcceE--------------------ECHHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCC
Confidence 68888888887765 22 24467889999999988633321111 126788999999998
Q ss_pred CcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCcc---EEeccCCCccccccccccccccCCCCchhhHHhh
Q 003957 422 TQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLK---YLNARGCKNLFQQESNGRGIEFSSYPCADLFAEL 497 (784)
Q Consensus 422 ~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~---~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l 497 (784)
|.++......|. .++|++|++++|.++... . +..+++|+ +|+++++..++..... .+
T Consensus 91 n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp--~-~~~l~~L~~L~~L~l~~N~~l~~i~~~----------------~~ 151 (239)
T 2xwt_C 91 RNLTYIDPDALKELPLLKFLGIFNTGLKMFP--D-LTKVYSTDIFFILEITDNPYMTSIPVN----------------AF 151 (239)
T ss_dssp TTCCEECTTSEECCTTCCEEEEEEECCCSCC--C-CTTCCBCCSEEEEEEESCTTCCEECTT----------------TT
T ss_pred CCeeEcCHHHhCCCCCCCEEeCCCCCCcccc--c-cccccccccccEEECCCCcchhhcCcc----------------cc
Confidence 888776666665 578999999988776522 1 35667777 8888776444432211 34
Q ss_pred hcCCCcc-EEEe-ccccCcccHhhhhhhcCcccEEEecCC
Q 003957 498 GRTRKLE-EIVL-GWGFSFLSLEVLKPAIKLLHSITVGLG 535 (784)
Q Consensus 498 ~~l~~L~-~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~ 535 (784)
..+++|+ +|++ ++.+..++...+ .. ++|+.|+++++
T Consensus 152 ~~l~~L~~~L~l~~n~l~~i~~~~~-~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 152 QGLCNETLTLKLYNNGFTSVQGYAF-NG-TKLDAVYLNKN 189 (239)
T ss_dssp TTTBSSEEEEECCSCCCCEECTTTT-TT-CEEEEEECTTC
T ss_pred cchhcceeEEEcCCCCCcccCHhhc-CC-CCCCEEEcCCC
Confidence 4566677 7777 344443333221 11 45566666555
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.8e-10 Score=121.91 Aligned_cols=59 Identities=14% Similarity=0.154 Sum_probs=27.3
Q ss_pred ccccEEEecCCcCchhhhhhcc------cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCC
Q 003957 412 RKLKSLCLSGTQLADKALYNFS------GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 412 ~~L~~L~Ls~~~l~~~~~~~l~------~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
+.|+.|++++|.+++.....+. .++|++|+|++|.+++.+...+...+++|++|++++|
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 3444555554444443333222 1345555555555555444444444444555555444
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.9e-10 Score=109.74 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=86.7
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEec
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLS 420 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls 420 (784)
.+++|+.|+++++.+.. +| .+..+++|++|++++|.. ++. .. ...+++|+.|+++
T Consensus 42 ~l~~L~~L~l~~n~i~~--------------------l~-~l~~l~~L~~L~l~~n~~-~~~--~~-l~~l~~L~~L~l~ 96 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD--------------------LT-GIEYAHNIKDLTINNIHA-TNY--NP-ISGLSNLERLRIM 96 (197)
T ss_dssp HHHTCCEEEEESSCCSC--------------------CT-TGGGCTTCSEEEEESCCC-SCC--GG-GTTCTTCCEEEEE
T ss_pred hcCCccEEeccCCCccC--------------------hH-HHhcCCCCCEEEccCCCC-Ccc--hh-hhcCCCCCEEEeE
Confidence 45789999999998875 33 237789999999999944 322 22 3689999999999
Q ss_pred CCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCcccc
Q 003957 421 GTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQ 475 (784)
Q Consensus 421 ~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~ 475 (784)
+|.+++..+..+. .++|++|++++|.+++..+..+ ..+++|++|++++|..+++
T Consensus 97 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~ 151 (197)
T 4ezg_A 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITD 151 (197)
T ss_dssp CTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCC
T ss_pred CCccCcccChhhcCCCCCCEEEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccc
Confidence 9999887777666 6899999999999987666554 6899999999999864554
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.10 E-value=7.1e-12 Score=130.96 Aligned_cols=202 Identities=19% Similarity=0.076 Sum_probs=130.9
Q ss_pred hhcCCCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhC
Q 003957 497 LGRTRKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESL 575 (784)
Q Consensus 497 l~~l~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l 575 (784)
+.++++++++++ +.++..++.. + .++++.|+++++. ++......+.. +++|+.|+++.+.++.... ...+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~--~--~~~l~~L~L~~N~-l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~---~~~l 76 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD--L--PKDTTILHLSENL-LYTFSLATLMP-YTRLTQLNLDRAELTKLQV---DGTL 76 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC--C--CTTCCEEECTTSC-CSEEEGGGGTT-CTTCCEEECTTSCCCEEEC---CSCC
T ss_pred ccccCCccEEECCCCCCCcCCCC--C--CCCCCEEEcCCCc-CCccCHHHhhc-CCCCCEEECCCCccCcccC---CCCC
Confidence 455677888888 4444443322 1 2468888888773 33222223333 6788888888777765322 1567
Q ss_pred CCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCC
Q 003957 576 RRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGL 655 (784)
Q Consensus 576 ~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L 655 (784)
++|+.|++++|.... +......+++|++|++++ +.++.... ..+.++++|++|++++|.+..- .......+++|
T Consensus 77 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~--N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L 150 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSF--NRLTSLPL-GALRGLGELQELYLKGNELKTL--PPGLLTPTPKL 150 (290)
T ss_dssp TTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCS--SCCCCCCS-STTTTCTTCCEEECTTSCCCCC--CTTTTTTCTTC
T ss_pred CcCCEEECCCCcCCc-CchhhccCCCCCEEECCC--CcCcccCH-HHHcCCCCCCEEECCCCCCCcc--ChhhcccccCC
Confidence 888888888883211 112234568889999988 45653221 2245678899999998876541 12223457889
Q ss_pred cEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 656 ISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 656 ~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+.|+|++|. ++......+.++++|+.|++++|.+ ..++..+..+++|+.|.+++|+..
T Consensus 151 ~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l----~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 151 EKLSLANNN-LTELPAGLLNGLENLDTLLLQENSL----YTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCC----CCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcC----CccChhhcccccCCeEEeCCCCcc
Confidence 999998876 5543334455788999999999877 556666777788999999887765
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-11 Score=123.77 Aligned_cols=85 Identities=14% Similarity=-0.010 Sum_probs=43.9
Q ss_pred HhhCCCCc-EEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcC-CCCcEEEecCCCCCChHHHHHHH
Q 003957 572 LESLRRLQ-VLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNC-SELVELSLVGCTLLSSDSQLIIS 649 (784)
Q Consensus 572 ~~~l~~L~-~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~-~~L~~L~Ls~c~~~~~~~~~~~~ 649 (784)
+.++++|+ +|++++|............ ++|++|+++++ ..++.... ..+.++ ++|++|++++|....-. .
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n-~~l~~i~~-~~~~~l~~~L~~L~l~~N~l~~l~-----~ 222 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN-KYLTVIDK-DAFGGVYSGPSLLDVSQTSVTALP-----S 222 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC-TTCCEECT-TTTTTCSBCCSEEECTTCCCCCCC-----C
T ss_pred ccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC-CCcccCCH-HHhhccccCCcEEECCCCccccCC-----h
Confidence 34555666 6666655211111111222 56777777763 12442211 123345 67888888887665411 1
Q ss_pred hcCCCCcEEeecCCC
Q 003957 650 QGWPGLISLHLEECG 664 (784)
Q Consensus 650 ~~~~~L~~L~L~~c~ 664 (784)
..+++|+.|++.++.
T Consensus 223 ~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 223 KGLEHLKELIARNTW 237 (239)
T ss_dssp TTCTTCSEEECTTC-
T ss_pred hHhccCceeeccCcc
Confidence 147778888877764
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.09 E-value=6e-11 Score=136.31 Aligned_cols=170 Identities=19% Similarity=0.157 Sum_probs=113.0
Q ss_pred hhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCC
Q 003957 522 PAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLP 600 (784)
Q Consensus 522 ~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~ 600 (784)
..+.+|+.|+++++. +.. +..+. .+++|+.|+|+.+.+++... +..+++|+.|+|++| +.+. .. ...++
T Consensus 40 ~~L~~L~~L~l~~n~-i~~--l~~l~-~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l--~~-l~~l~ 109 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKS--VQGIQ-YLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDL--SS-LKDLK 109 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCC--CTTGG-GCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCC--TT-STTCT
T ss_pred hcCCCCCEEECcCCC-CCC--ChHHc-cCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCC--hh-hccCC
Confidence 456788888888773 222 12333 37888888888777766422 677888888888888 3321 12 34557
Q ss_pred CccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCC
Q 003957 601 NLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIAL 680 (784)
Q Consensus 601 ~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L 680 (784)
+|+.|++++| .++.. . .+..+++|+.|+|++|.+... .....+++|+.|+|++|. ++...+ +..+++|
T Consensus 110 ~L~~L~Ls~N--~l~~l--~-~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L 177 (605)
T 1m9s_A 110 KLKSLSLEHN--GISDI--N-GLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKL 177 (605)
T ss_dssp TCCEEECTTS--CCCCC--G-GGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTC
T ss_pred CCCEEEecCC--CCCCC--c-cccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcCCc-CCCchh--hccCCCC
Confidence 8888888884 45542 1 244677888888888876652 123467888888888876 443322 6678888
Q ss_pred CEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 681 EDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 681 ~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+.|+|++|.+ + .+ ..+..+++|+.|+|++|+..
T Consensus 178 ~~L~Ls~N~i--~--~l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 178 QNLYLSKNHI--S--DL-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CEEECCSSCC--C--BC-GGGTTCTTCSEEECCSEEEE
T ss_pred CEEECcCCCC--C--CC-hHHccCCCCCEEEccCCcCc
Confidence 8888888865 3 22 34677888888888887765
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-10 Score=121.92 Aligned_cols=170 Identities=19% Similarity=0.120 Sum_probs=123.0
Q ss_pred CCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCC
Q 003957 550 CPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSE 628 (784)
Q Consensus 550 ~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~ 628 (784)
+++|+.|+++.+.+++. . .+..+++|+.|++++| +.+... ...+++|++|+++++ .++... . +..+++
T Consensus 45 l~~L~~L~l~~~~i~~~--~-~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n--~l~~~~--~-l~~l~~ 113 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDEN--KVKDLS--S-LKDLKK 113 (291)
T ss_dssp HHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSS--CCCCGG--G-GTTCTT
T ss_pred cCcccEEEccCCCcccC--h-hHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCC--cCCCCh--h-hccCCC
Confidence 45689999977777653 2 2667889999999988 333222 446689999999984 566532 2 567889
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCc
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLR 708 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~ 708 (784)
|++|++++|.+..- . ....+++|+.|++++|. ++.. ..+..+++|+.|++++|.+ . .+.. +..+++|+
T Consensus 114 L~~L~L~~n~i~~~---~-~l~~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L~~N~l--~--~~~~-l~~l~~L~ 181 (291)
T 1h6t_A 114 LKSLSLEHNGISDI---N-GLVHLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDNQI--S--DIVP-LAGLTKLQ 181 (291)
T ss_dssp CCEEECTTSCCCCC---G-GGGGCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCC--C--CCGG-GTTCTTCC
T ss_pred CCEEECCCCcCCCC---h-hhcCCCCCCEEEccCCc-CCcc--hhhccCCCCCEEEccCCcc--c--cchh-hcCCCccC
Confidence 99999999877652 1 23468889999999886 5433 4566889999999999876 3 2222 78889999
Q ss_pred eeccccccccCCCCCcccccCCCCCCEEEecCCCCcCc
Q 003957 709 LVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKSKNR 746 (784)
Q Consensus 709 ~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~~~~ 746 (784)
.|++++|... .++.+..+++|+.|++++|+....
T Consensus 182 ~L~L~~N~i~----~l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 182 NLYLSKNHIS----DLRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp EEECCSSCCC----BCGGGTTCTTCSEEEEEEEEEECC
T ss_pred EEECCCCcCC----CChhhccCCCCCEEECcCCcccCC
Confidence 9999988665 456678888999999998875443
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.8e-11 Score=123.29 Aligned_cols=177 Identities=15% Similarity=0.046 Sum_probs=124.5
Q ss_pred CCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcE
Q 003957 552 MLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVE 631 (784)
Q Consensus 552 ~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~ 631 (784)
..+.++++.+.++.. +. .-.+++++|++++|............+++|++|+++++ .++... ...+..+++|++
T Consensus 17 ~~~~l~~~~~~l~~i--p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~i~-~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI--PS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN--KLQTLP-AGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSCCSSC--CS--CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS--CCSCCC-TTTTSSCTTCCE
T ss_pred CCCEEEccCCCCCcc--CC--CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC--ccCeeC-hhhhcCCCCCCE
Confidence 355666655555431 11 01247999999999322222223345699999999994 565322 123457899999
Q ss_pred EEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceec
Q 003957 632 LSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVS 711 (784)
Q Consensus 632 L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~ 711 (784)
|++++|.+..- ......++++|+.|++++|. ++......+.++++|+.|++++|.+ . ......+..+++|+.|+
T Consensus 90 L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l--~-~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 90 LWVTDNKLQAL--PIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNEL--Q-SLPKGVFDKLTSLKELR 163 (270)
T ss_dssp EECCSSCCCCC--CTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--C-CCCTTTTTTCTTCCEEE
T ss_pred EECCCCcCCcC--CHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcC--C-ccCHhHccCCcccceeE
Confidence 99999987641 12233568999999999987 6555555567899999999999976 4 33344578899999999
Q ss_pred cccccccCCCCCccc--ccCCCCCCEEEecCCCCcC
Q 003957 712 LDLCDASDGNFEIPD--YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 712 L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~~ 745 (784)
+++|... .++. +..+++|++|++++|+...
T Consensus 164 L~~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 164 LYNNQLK----RVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CCSSCCS----CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ecCCcCc----EeChhHhccCCCcCEEECCCCcCCc
Confidence 9998766 3444 8889999999999997543
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-10 Score=106.61 Aligned_cols=105 Identities=15% Similarity=0.157 Sum_probs=90.4
Q ss_pred CCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHh---CCCCCEEEeeCC-CCCHHHHHHhhcc
Q 003957 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRR---CVKLQSIIVCDT-SFGVYSIRALCSE 366 (784)
Q Consensus 291 ~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~---~~~L~~L~Ls~~-~i~~~~l~~l~~~ 366 (784)
.+|++|++++|. ++|.++..+. .|++|++|+|++|..++|.++..+... |++|++|++++| .|++.++.++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L--- 135 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL--- 135 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG---
T ss_pred ceEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH---
Confidence 579999999997 9999999885 699999999999999999999998863 678999999998 6999999876
Q ss_pred CCccCcccccccchhhhcCCCccEEEecCCCCCCHHHH--HHHHHhCccccE
Q 003957 367 VPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYL--LELMCQARKLKS 416 (784)
Q Consensus 367 l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l--~~l~~~~~~L~~ 416 (784)
..+++|++|++++|+.+++.++ ..+...+|+++.
T Consensus 136 ----------------~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 136 ----------------HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp ----------------GGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred ----------------hcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 6689999999999999998764 344567777653
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.01 E-value=4e-10 Score=119.97 Aligned_cols=289 Identities=15% Similarity=0.086 Sum_probs=158.8
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCc--hhhhhhcccCCcCEEEecCCccchhhHHHHHhc----
Q 003957 385 ASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLA--DKALYNFSGSSLEMLDVSDTMISGAALAYMVHG---- 458 (784)
Q Consensus 385 l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~--~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~---- 458 (784)
+.+|++|.+++. +....+..+...+++|+.|+|++|.+. ...... .+.+..+.+..+.+.... +.+
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~--~~~~~~~~~~~~~I~~~a----F~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT--YPNGKFYIYMANFVPAYA----FSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS--SGGGCCEEECTTEECTTT----TEEEETT
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc--ccccccccccccccCHHH----hcccccc
Confidence 457899999875 344556555344899999999998776 222111 122455666666554432 245
Q ss_pred ----CCCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEec
Q 003957 459 ----NSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVG 533 (784)
Q Consensus 459 ----l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~ 533 (784)
|++|+.+.+.. .++..+-. .+..|++|+++++. +....+...++ ..+.++..+...
T Consensus 96 ~~~g~~~L~~l~L~~--~i~~I~~~----------------aF~~~~~L~~l~l~~n~i~~i~~~aF-~~~~~l~~l~~~ 156 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE--KIKNIEDA----------------AFKGCDNLKICQIRKKTAPNLLPEAL-ADSVTAIFIPLG 156 (329)
T ss_dssp EEEECTTCCC-CBCT--TCCEECTT----------------TTTTCTTCCEEEBCCSSCCEECTTSS-CTTTCEEEECTT
T ss_pred cccccCCCcEEECCc--cccchhHH----------------HhhcCcccceEEcCCCCccccchhhh-cCCCceEEecCc
Confidence 88888888865 34332211 34455666666663 33333333222 222223222222
Q ss_pred CCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCc-EEEecccCC-hhHHHHhhcCCCCccEEEccCCC
Q 003957 534 LGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQ-VLAICHCLG-DLSISSFKLPLPNLRKLKLERVT 611 (784)
Q Consensus 534 ~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~-~L~Ls~c~~-~~~~~~l~~~~~~L~~L~L~~c~ 611 (784)
.. ....... .+.+ ..+.+|.+|+ .+.+..... ............+++.+.+.+
T Consensus 157 ~~-----~~~~~~~--------------~i~~----~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~-- 211 (329)
T 3sb4_A 157 SS-----DAYRFKN--------------RWEH----FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEG-- 211 (329)
T ss_dssp CT-----HHHHTST--------------TTTT----SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEE--
T ss_pred ch-----hhhhccc--------------cccc----cccccccccceeEEecCCCcHHHHHhhcccCccccceEEEee--
Confidence 11 0000000 0000 0122344444 334433211 111111112234666777766
Q ss_pred CCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCC-EEEcccCCC
Q 003957 612 PWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALE-DLLLRHNGP 690 (784)
Q Consensus 612 ~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~-~L~L~~n~~ 690 (784)
.+...+...+...|++|+.|++++|.... .......+|++|+.++|.++ ++..+...|.+|++|+ .+++.++ +
T Consensus 212 -~l~~~~~~~l~~~~~~L~~l~L~~n~i~~--I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~-l 285 (329)
T 3sb4_A 212 -KLDNADFKLIRDYMPNLVSLDISKTNATT--IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPAS-V 285 (329)
T ss_dssp -CCCHHHHHHHHHHCTTCCEEECTTBCCCE--ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTT-C
T ss_pred -eecHHHHHHHHHhcCCCeEEECCCCCcce--ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEccc-c
Confidence 25566666666668888888888765443 22233456888888888774 6666666677888888 8888773 2
Q ss_pred CCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEEe
Q 003957 691 GIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKI 738 (784)
Q Consensus 691 gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~i 738 (784)
. .....++.+|++|+.+.+.++... .++. |.+|++|+.++.
T Consensus 286 --~-~I~~~aF~~c~~L~~l~l~~n~i~----~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 286 --T-AIEFGAFMGCDNLRYVLATGDKIT----TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp --C-EECTTTTTTCTTEEEEEECSSCCC----EECTTTTCTTCCCCEEEC
T ss_pred --e-EEchhhhhCCccCCEEEeCCCccC----ccchhhhcCCcchhhhcc
Confidence 3 444566888888888888765544 3444 888888888763
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-10 Score=119.21 Aligned_cols=111 Identities=20% Similarity=0.154 Sum_probs=66.9
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcC
Q 003957 625 NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKM 704 (784)
Q Consensus 625 ~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l 704 (784)
.+++|++|++++|.+..- ......++++|+.|+|++|. ++......+.++++|+.|++++|.+ . ...+..+..+
T Consensus 81 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l--~-~~~~~~~~~l 154 (251)
T 3m19_A 81 DLTELGTLGLANNQLASL--PLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQL--Q-SIPAGAFDKL 154 (251)
T ss_dssp TCTTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--C-CCCTTTTTTC
T ss_pred cCCcCCEEECCCCccccc--ChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcC--C-ccCHHHcCcC
Confidence 455666666666654431 11122346677777777664 4433333345677778888877755 3 3333356677
Q ss_pred CCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCcC
Q 003957 705 PMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~~ 745 (784)
++|+.|+|++|... .++. +..+++|+.|++++|+...
T Consensus 155 ~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 155 TNLQTLSLSTNQLQ----SVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTCCEEECCSSCCS----CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCEEECCCCcCC----ccCHHHHhCCCCCCEEEeeCCceeC
Confidence 77888888777655 2333 6777788888888877533
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=99.01 E-value=7.4e-10 Score=104.41 Aligned_cols=86 Identities=14% Similarity=0.265 Sum_probs=55.3
Q ss_pred CccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhc---CCCCcEEeecCCCCCCHHHHHHhhCC
Q 003957 601 NLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQG---WPGLISLHLEECGDITAYGVTSLFNC 677 (784)
Q Consensus 601 ~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~---~~~L~~L~L~~c~~i~~~~~~~l~~~ 677 (784)
+|+.|++++| . +++.++..+ .+|++|++|+|++|..++|..+..+... +++|+.|+|++|..||+.|+..+..+
T Consensus 62 ~L~~LDLs~~-~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDS-C-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CEEEEEEESC-C-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred eEeEEeCcCC-C-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 5666666665 2 666666554 3566666666666666666666666542 45667777777766777666666666
Q ss_pred CCCCEEEcccCC
Q 003957 678 IALEDLLLRHNG 689 (784)
Q Consensus 678 ~~L~~L~L~~n~ 689 (784)
++|+.|++++|.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 677777776664
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-10 Score=130.62 Aligned_cols=169 Identities=18% Similarity=0.165 Sum_probs=98.4
Q ss_pred hhcCCCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhC
Q 003957 497 LGRTRKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESL 575 (784)
Q Consensus 497 l~~l~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l 575 (784)
+..++.|+.|+++ +.+...+ .+..+++|+.|+|++|. +.+.. .+. .+++|+.|+|+.|.+++. + .+..+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~-l~~~~--~l~-~l~~L~~L~Ls~N~l~~l--~-~l~~l 108 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNK-LTDIK--PLT-NLKNLGWLFLDENKIKDL--S-SLKDL 108 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSC-CCCCG--GGG-GCTTCCEEECCSSCCCCC--T-TSTTC
T ss_pred hhcCCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCC-CCCCh--hhc-cCCCCCEEECcCCCCCCC--h-hhccC
Confidence 3445667777773 3333332 24556777777777762 22211 133 367777777776666652 1 35566
Q ss_pred CCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCC
Q 003957 576 RRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPG 654 (784)
Q Consensus 576 ~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~ 654 (784)
++|+.|+|++| +.+. .. ...+++|+.|+|++| .++.. ..+..+++|+.|+|++|.+..... ...+++
T Consensus 109 ~~L~~L~Ls~N~l~~l--~~-l~~l~~L~~L~Ls~N--~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~ 176 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI--NG-LVHLPQLESLYLGNN--KITDI---TVLSRLTKLDTLSLEDNQISDIVP----LAGLTK 176 (605)
T ss_dssp TTCCEEECTTSCCCCC--GG-GGGCTTCSEEECCSS--CCCCC---GGGGSCTTCSEEECCSSCCCCCGG----GTTCTT
T ss_pred CCCCEEEecCCCCCCC--cc-ccCCCccCEEECCCC--ccCCc---hhhcccCCCCEEECcCCcCCCchh----hccCCC
Confidence 77777777777 2221 12 234577777777774 45543 234466777777777776554222 345777
Q ss_pred CcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCC
Q 003957 655 LISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGP 690 (784)
Q Consensus 655 L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~ 690 (784)
|+.|+|++|. ++.. ..+..+++|+.|+|++|.+
T Consensus 177 L~~L~Ls~N~-i~~l--~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 177 LQNLYLSKNH-ISDL--RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CCEEECCSSC-CCBC--GGGTTCTTCSEEECCSEEE
T ss_pred CCEEECcCCC-CCCC--hHHccCCCCCEEEccCCcC
Confidence 7777777765 4432 3455677777777777643
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.3e-11 Score=128.72 Aligned_cols=224 Identities=12% Similarity=-0.003 Sum_probs=148.0
Q ss_pred CCccEEEe-ccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEE-EeeeeccChHHHHHHHhhCCCC
Q 003957 501 RKLEEIVL-GWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELV-VLYFQVMSDSIIINILESLRRL 578 (784)
Q Consensus 501 ~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L-~L~~~~i~~~~l~~~~~~l~~L 578 (784)
+.+++|++ ++.++.++.. .+..+++|++|+++++...+......+ ..++++.++ .+++|.++.. .+..+.++++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~i~~~i~~~~f-~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVF-SNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCCSEECTT-SSTTCTTCCEEEEECCTTCCEECTTSB-CSCTTCCEEEEEEETTCCEE-CTTSBCCCTTC
T ss_pred CCCCEEEccCCcCCCcCHH-HHcCCCCCCEEECcCCCCCCccChhHh-hcchhhhhhhcccCCccccc-Cchhhhhcccc
Confidence 46899999 5566655543 467789999999999843221111111 235667665 4477877653 13346788999
Q ss_pred cEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEE
Q 003957 579 QVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISL 658 (784)
Q Consensus 579 ~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L 658 (784)
+.|++++|..............++..|++.++ +.++......+......++.|++++|.+..- .. ......+|+.|
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i--~~-~~f~~~~L~~l 182 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNKNGIQEI--HN-SAFNGTQLDEL 182 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-TTCCEECTTSSTTSBSSCEEEECCSSCCCEE--CT-TSSTTEEEEEE
T ss_pred ccccccccccccCCchhhcccchhhhhhhccc-cccccccccchhhcchhhhhhccccccccCC--Ch-hhccccchhHH
Confidence 99999998321111111223357888888776 4555332222222234689999999986531 11 11235679999
Q ss_pred eecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCEEEe
Q 003957 659 HLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKI 738 (784)
Q Consensus 659 ~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~i 738 (784)
.+.+++.++......+.++++|+.|++++|.+ ..++. ..+.+|+.|.+.++..++ .+|.+.++++|+.+++
T Consensus 183 ~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l----~~lp~--~~~~~L~~L~~l~~~~l~---~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRI----HSLPS--YGLENLKKLRARSTYNLK---KLPTLEKLVALMEASL 253 (350)
T ss_dssp ECTTCTTCCCCCTTTTTTEECCSEEECTTSCC----CCCCS--SSCTTCCEEECTTCTTCC---CCCCTTTCCSCCEEEC
T ss_pred hhccCCcccCCCHHHhccCcccchhhcCCCCc----CccCh--hhhccchHhhhccCCCcC---cCCCchhCcChhhCcC
Confidence 99988878766656677899999999999976 33332 336677888877777764 4577888999999999
Q ss_pred cC
Q 003957 739 TK 740 (784)
Q Consensus 739 s~ 740 (784)
.+
T Consensus 254 ~~ 255 (350)
T 4ay9_X 254 TY 255 (350)
T ss_dssp SC
T ss_pred CC
Confidence 76
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-10 Score=119.37 Aligned_cols=157 Identities=17% Similarity=0.040 Sum_probs=79.0
Q ss_pred CCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcE
Q 003957 552 MLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVE 631 (784)
Q Consensus 552 ~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~ 631 (784)
.++.|+++.+.++... ...+.++++|++|++++|............+++|++|++++ +.++.... ..+..+++|++
T Consensus 36 ~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~-~~~~~l~~L~~ 111 (251)
T 3m19_A 36 DTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN--NQLASLPL-GVFDHLTQLDK 111 (251)
T ss_dssp TCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT--SCCCCCCT-TTTTTCTTCCE
T ss_pred CCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC--CcccccCh-hHhcccCCCCE
Confidence 3444444444443321 11234455556666555521111111222345666666666 33442111 12234566677
Q ss_pred EEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceec
Q 003957 632 LSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVS 711 (784)
Q Consensus 632 L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~ 711 (784)
|++++|.+..- ......++++|+.|+|++|. ++......+.++++|+.|++++|.+ . ...+..+..+++|+.|+
T Consensus 112 L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l--~-~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 112 LYLGGNQLKSL--PSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQL--Q-SVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp EECCSSCCCCC--CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--S-CCCTTTTTTCTTCCEEE
T ss_pred EEcCCCcCCCc--ChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcC--C-ccCHHHHhCCCCCCEEE
Confidence 77766655431 11122346677777777664 4433333455667777777777754 3 33333466677777777
Q ss_pred ccccccc
Q 003957 712 LDLCDAS 718 (784)
Q Consensus 712 L~~c~~~ 718 (784)
+++|+..
T Consensus 186 l~~N~~~ 192 (251)
T 3m19_A 186 LFGNQFD 192 (251)
T ss_dssp CCSCCBC
T ss_pred eeCCcee
Confidence 7776654
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.3e-10 Score=121.88 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=44.7
Q ss_pred hcCCCCcEEEecCCCCCChHHHHHHHhcCCCCc-EEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHh
Q 003957 624 QNCSELVELSLVGCTLLSSDSQLIISQGWPGLI-SLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAAS 702 (784)
Q Consensus 624 ~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~-~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~ 702 (784)
.+|++|++|++.++ +.. +......+|++|+ .+.+.+ .++..+...|.+|++|+.|+++.|.+ . .....++.
T Consensus 247 ~~~~~L~~l~l~~n--i~~-I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i--~-~I~~~aF~ 318 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN--LKT-IGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKI--T-TLGDELFG 318 (329)
T ss_dssp TTCTTCCEEECCTT--CCE-ECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCC--C-EECTTTTC
T ss_pred hCCCCCCEEECCcc--cce-ehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCcc--C-ccchhhhc
Confidence 34556666666554 111 1122234566676 777765 35545555566777777777766644 3 33334566
Q ss_pred cCCCCceec
Q 003957 703 KMPMLRLVS 711 (784)
Q Consensus 703 ~l~~L~~L~ 711 (784)
++++|+.+.
T Consensus 319 ~~~~L~~ly 327 (329)
T 3sb4_A 319 NGVPSKLIY 327 (329)
T ss_dssp TTCCCCEEE
T ss_pred CCcchhhhc
Confidence 677776654
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-09 Score=112.13 Aligned_cols=144 Identities=17% Similarity=0.071 Sum_probs=60.8
Q ss_pred CCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCC
Q 003957 550 CPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSE 628 (784)
Q Consensus 550 ~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~ 628 (784)
+++|+.|+++.+.+++.. .+..+++|+.|++++| +.+... ...+++|++|+++++ .++... .+. . ++
T Consensus 40 l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N--~l~~l~--~~~-~-~~ 107 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRN--RLKNLN--GIP-S-AC 107 (263)
T ss_dssp HTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSS--CCSCCT--TCC-C-SS
T ss_pred cCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCC--ccCCcC--ccc-c-Cc
Confidence 345666666555554421 2444555555555555 221111 223355555555552 333211 011 1 34
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCc
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLR 708 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~ 708 (784)
|++|++++|.+..- . ...++++|+.|++++|. ++.. ..+..+++|+.|++++|.+ . .+ ..+..+++|+
T Consensus 108 L~~L~L~~N~l~~~---~-~l~~l~~L~~L~Ls~N~-i~~~--~~l~~l~~L~~L~L~~N~i--~--~~-~~l~~l~~L~ 175 (263)
T 1xeu_A 108 LSRLFLDNNELRDT---D-SLIHLKNLEILSIRNNK-LKSI--VMLGFLSKLEVLDLHGNEI--T--NT-GGLTRLKKVN 175 (263)
T ss_dssp CCEEECCSSCCSBS---G-GGTTCTTCCEEECTTSC-CCBC--GGGGGCTTCCEEECTTSCC--C--BC-TTSTTCCCCC
T ss_pred ccEEEccCCccCCC---h-hhcCcccccEEECCCCc-CCCC--hHHccCCCCCEEECCCCcC--c--ch-HHhccCCCCC
Confidence 55555555443331 1 11234445555554443 3321 1233444555555555433 2 11 3344444445
Q ss_pred eeccccccc
Q 003957 709 LVSLDLCDA 717 (784)
Q Consensus 709 ~L~L~~c~~ 717 (784)
.|++++|+.
T Consensus 176 ~L~l~~N~~ 184 (263)
T 1xeu_A 176 WIDLTGQKC 184 (263)
T ss_dssp EEEEEEEEE
T ss_pred EEeCCCCcc
Confidence 555544443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.87 E-value=8.5e-10 Score=102.61 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=47.7
Q ss_pred CCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCC
Q 003957 576 RRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPG 654 (784)
Q Consensus 576 ~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~ 654 (784)
++|+.|++++|. .+..+......+++|++|++++| .++.. ..+..+++|+.|++++|.+... ......++++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~---~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV--GLTSI---ANLPKLNKLKKLELSDNRVSGG--LEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS--CCCCC---TTCCCCTTCCEEECCSSCCCSC--THHHHHHCTT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC--CCCCc---hhhhcCCCCCEEECCCCcccch--HHHHhhhCCC
Confidence 456666666652 21122222234455555555553 34332 2233445555555555554431 1112223555
Q ss_pred CcEEeecCCCCCCHH-HHHHhhCCCCCCEEEcccCC
Q 003957 655 LISLHLEECGDITAY-GVTSLFNCIALEDLLLRHNG 689 (784)
Q Consensus 655 L~~L~L~~c~~i~~~-~~~~l~~~~~L~~L~L~~n~ 689 (784)
|+.|++++|. ++.. .+..+..+++|+.|++++|.
T Consensus 90 L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 90 LTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp CCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred CCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc
Confidence 5555555544 3332 22334455555555555554
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.2e-10 Score=111.16 Aligned_cols=169 Identities=16% Similarity=0.064 Sum_probs=102.0
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCc
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELV 630 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~ 630 (784)
++|++|+++.+.++.. ....+.++++|++|++++|.-..........+++|++|+++++ .++.... ..+..+++|+
T Consensus 28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~-~~~~~l~~L~ 103 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN--QLQSLPN-GVFDKLTQLK 103 (208)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCT-TTTTTCTTCC
T ss_pred CCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC--cCCccCH-hHhcCccCCC
Confidence 4566666665555532 1223456677777777776221222222334577778887773 4542211 2234677888
Q ss_pred EEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCcee
Q 003957 631 ELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLV 710 (784)
Q Consensus 631 ~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L 710 (784)
+|++++|.+... ......++++|+.|++++|. ++......+..+++|+.|++++|.+ ...+++|+.|
T Consensus 104 ~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~----------~~~~~~l~~L 170 (208)
T 2o6s_A 104 ELALNTNQLQSL--PDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW----------DCTCPGIRYL 170 (208)
T ss_dssp EEECCSSCCCCC--CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB----------CCCTTTTHHH
T ss_pred EEEcCCCcCccc--CHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe----------ecCCCCHHHH
Confidence 888888876541 11123457888888888876 5543334456788899999998865 2357888888
Q ss_pred ccccccccCCCCCccc-ccCCCCCCEEEecCCCC
Q 003957 711 SLDLCDASDGNFEIPD-YADRYSLSTVKITKCKS 743 (784)
Q Consensus 711 ~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~ 743 (784)
.++.|... + .+|. +++++. ++..|..
T Consensus 171 ~~~~n~~~-g--~ip~~~~~l~~----~~~~C~~ 197 (208)
T 2o6s_A 171 SEWINKHS-G--VVRNSAGSVAP----DSAKCSG 197 (208)
T ss_dssp HHHHHHCT-T--TBBCTTSSBCT----TCSBBTT
T ss_pred HHHHHhCC-c--eeeccCccccC----Ccccccc
Confidence 88887665 3 3565 554444 5555654
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-09 Score=103.93 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=51.1
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHH-HHHHhhCCCCCCEEEcccCCCCCChhHHH----H
Q 003957 625 NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAY-GVTSLFNCIALEDLLLRHNGPGIPRDFIL----D 699 (784)
Q Consensus 625 ~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~-~~~~l~~~~~L~~L~L~~n~~gl~~~~~~----~ 699 (784)
.+++|++|++++|.+... .......+++|+.|++++|. ++.. .+..+..+++|+.|++++|.+ ...+ .
T Consensus 69 ~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l----~~~~~~~~~ 141 (168)
T 2ell_A 69 KLPKLKKLELSENRIFGG--LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEV----TNLNDYRES 141 (168)
T ss_dssp CCSSCCEEEEESCCCCSC--CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGG----GTSTTHHHH
T ss_pred cCCCCCEEECcCCcCchH--HHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcC----cchHHHHHH
Confidence 455666666666665442 12223346677777777765 4432 224555677777777777754 2222 3
Q ss_pred HHhcCCCCceecccccccc
Q 003957 700 AASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 700 ~l~~l~~L~~L~L~~c~~~ 718 (784)
.+..+++|+.|++++|...
T Consensus 142 ~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 142 VFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHTTCSSCCEETTEETTSC
T ss_pred HHHhCccCcEecCCCCChh
Confidence 5667777777777776654
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2.9e-09 Score=98.91 Aligned_cols=131 Identities=18% Similarity=0.125 Sum_probs=79.0
Q ss_pred CCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCC
Q 003957 599 LPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCI 678 (784)
Q Consensus 599 ~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~ 678 (784)
.++|++|++++| .+++..+...+..+++|+.|++++|..... ....++++|+.|++++|. ++...+..+..++
T Consensus 16 ~~~l~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNS--RSNEGKLEGLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTC--BCBTTBCCSCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCT
T ss_pred CccCeEEEccCC--cCChhHHHHHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCc-ccchHHHHhhhCC
Confidence 356777777774 455333333445677777777777765542 222456777777777766 4433333344577
Q ss_pred CCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcc-c-ccCCCCCCEEEec
Q 003957 679 ALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIP-D-YADRYSLSTVKIT 739 (784)
Q Consensus 679 ~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~-~-~~~~~~L~~L~is 739 (784)
+|+.|++++|.+ .+-..+..+..+++|+.|++++|+.. +....+ . +..+++|+.|+++
T Consensus 89 ~L~~L~ls~N~i--~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNKI--KDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSCC--CSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCcC--CChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 777777777765 31123355777777777777777654 220111 2 6667777777765
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.83 E-value=6.4e-10 Score=105.79 Aligned_cols=137 Identities=20% Similarity=0.117 Sum_probs=96.1
Q ss_pred CCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCC
Q 003957 599 LPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCI 678 (784)
Q Consensus 599 ~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~ 678 (784)
.++|++|++++| .+++..+...+..+++|++|++++|.+... .....+++|+.|++++|. ++...+..+.+++
T Consensus 23 ~~~L~~L~l~~n--~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNC--KSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENR-IFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSC--BCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCT
T ss_pred cccCCEEECCCC--CCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCc-CchHHHHHHhhCC
Confidence 356777777774 455333333345678899999999886552 233468999999999987 5443333444699
Q ss_pred CCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCc-cc-ccCCCCCCEEEecCCCCcC
Q 003957 679 ALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEI-PD-YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 679 ~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l-~~-~~~~~~L~~L~is~C~~~~ 745 (784)
+|+.|++++|.+ .+-.....+..+++|+.|++++|+.. +.... .. +..+++|++|++++|....
T Consensus 96 ~L~~L~Ls~N~l--~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 96 NLTHLNLSGNKL--KDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp TCCEEECBSSSC--CSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCCEEeccCCcc--CcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999999976 31112266888999999999999776 22010 12 7889999999999998644
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.2e-10 Score=111.03 Aligned_cols=132 Identities=17% Similarity=0.136 Sum_probs=82.3
Q ss_pred CccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCC
Q 003957 601 NLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIAL 680 (784)
Q Consensus 601 ~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L 680 (784)
.+++|++++ +.++.......+..+++|+.|++++|.+..- ......++++|+.|+|++|. ++......+.++++|
T Consensus 33 ~~~~L~L~~--N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i--~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 33 YTAELRLNN--NEFTVLEATGIFKKLPQLRKINFSNNKITDI--EEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESL 107 (220)
T ss_dssp TCSEEECCS--SCCCEECCCCCGGGCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSC
T ss_pred CCCEEEcCC--CcCCccCchhhhccCCCCCEEECCCCcCCEE--CHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCC
Confidence 445555555 3444321112234566777777777765431 11122457778888887766 554444456678888
Q ss_pred CEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCc-cc-ccCCCCCCEEEecCCCCc
Q 003957 681 EDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEI-PD-YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 681 ~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l-~~-~~~~~~L~~L~is~C~~~ 744 (784)
++|++++|.+ . ...+..+..+++|+.|+|++|... .+ |. +..+++|++|++++|+-.
T Consensus 108 ~~L~Ls~N~l--~-~~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 108 KTLMLRSNRI--T-CVGNDSFIGLSSVRLLSLYDNQIT----TVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CEEECTTSCC--C-CBCTTSSTTCTTCSEEECTTSCCC----CBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CEEECCCCcC--C-eECHhHcCCCccCCEEECCCCcCC----EECHHHhcCCCCCCEEEecCcCCc
Confidence 8888888865 3 333556777888888888887665 33 44 778888888888887743
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-09 Score=122.51 Aligned_cols=155 Identities=15% Similarity=0.081 Sum_probs=76.2
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCC
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSEL 629 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L 629 (784)
++|+.|+++.|.++. ++ ..+++|+.|++++| +.. . ..+. .+|++|++++ +.++. +.. .+++|
T Consensus 80 ~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-i-p~l~---~~L~~L~Ls~--N~l~~--lp~---~l~~L 142 (571)
T 3cvr_A 80 PQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-L-PELP---ASLKHLDVDN--NQLTM--LPE---LPALL 142 (571)
T ss_dssp TTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-C-CCCC---TTCCEEECCS--SCCSC--CCC---CCTTC
T ss_pred CCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-c-chhh---cCCCEEECCC--CcCCC--CCC---cCccc
Confidence 445555555544442 11 23455555555555 221 1 1111 2566666666 33433 111 35566
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCC--
Q 003957 630 VELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPML-- 707 (784)
Q Consensus 630 ~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L-- 707 (784)
+.|++++|.+..- ...+++|+.|+|++|. ++.... +. ++|+.|++++|.+ ..++. +.. +|
T Consensus 143 ~~L~Ls~N~l~~l------p~~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L----~~lp~-~~~--~L~~ 204 (571)
T 3cvr_A 143 EYINADNNQLTML------PELPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLL----ESLPA-VPV--RNHH 204 (571)
T ss_dssp CEEECCSSCCSCC------CCCCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCC----SSCCC-CC-------
T ss_pred cEEeCCCCccCcC------CCcCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCC----Cchhh-HHH--hhhc
Confidence 6666666654431 1135566666666655 332111 22 5666666666654 22222 221 44
Q ss_pred -----ceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCc
Q 003957 708 -----RLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 708 -----~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~ 744 (784)
+.|++++|... .+|. +..+++|+.|++++|+..
T Consensus 205 ~~~~L~~L~Ls~N~l~----~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 205 SEETEIFFRCRENRIT----HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp ---CCEEEECCSSCCC----CCCGGGGGSCTTEEEECCSSSCC
T ss_pred ccccceEEecCCCcce----ecCHHHhcCCCCCEEEeeCCcCC
Confidence 66777666554 4555 555667777777776643
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.77 E-value=9.2e-08 Score=102.36 Aligned_cols=85 Identities=12% Similarity=0.100 Sum_probs=55.9
Q ss_pred hcCCCccEEEecCCCC-------CCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHH
Q 003957 383 TLASNLQMLHMACCNG-------VDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYM 455 (784)
Q Consensus 383 ~~l~~L~~L~L~~c~~-------l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~ 455 (784)
..+++|+.|.+..... +....+..+...+|+|+.|+|+++. ...+..+..++|++|+|..|.++...+..+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~--~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN--NLSIGKKPRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB--TCBCCSCBCTTCSEEEEECSBCCHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC--CceeccccCCCCcEEEEecCCCChHHHHHH
Confidence 4577888888865321 1111244556788899999998762 111222336789999998888887777666
Q ss_pred Hh-cCCCccEEeccC
Q 003957 456 VH-GNSGLKYLNARG 469 (784)
Q Consensus 456 ~~-~l~~L~~L~L~~ 469 (784)
.. .+|+|++|+|..
T Consensus 214 ~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHSBCTTCCEEEEEC
T ss_pred HHccCCCCcEEEEec
Confidence 43 688888888753
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-09 Score=117.18 Aligned_cols=79 Identities=19% Similarity=0.117 Sum_probs=42.8
Q ss_pred CCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCC
Q 003957 600 PNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIA 679 (784)
Q Consensus 600 ~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~ 679 (784)
++|++|.+.++ +.++...- ..+.++++|++|++++|.+..- ....+.+|+.|.+.+++.++.. +.+..+++
T Consensus 177 ~~L~~l~l~~~-n~l~~i~~-~~f~~l~~L~~LdLs~N~l~~l-----p~~~~~~L~~L~~l~~~~l~~l--P~l~~l~~ 247 (350)
T 4ay9_X 177 TQLDELNLSDN-NNLEELPN-DVFHGASGPVILDISRTRIHSL-----PSYGLENLKKLRARSTYNLKKL--PTLEKLVA 247 (350)
T ss_dssp EEEEEEECTTC-TTCCCCCT-TTTTTEECCSEEECTTSCCCCC-----CSSSCTTCCEEECTTCTTCCCC--CCTTTCCS
T ss_pred cchhHHhhccC-CcccCCCH-HHhccCcccchhhcCCCCcCcc-----ChhhhccchHhhhccCCCcCcC--CCchhCcC
Confidence 45666666544 34432111 1234566777777777765431 0123566777776666654422 23456777
Q ss_pred CCEEEccc
Q 003957 680 LEDLLLRH 687 (784)
Q Consensus 680 L~~L~L~~ 687 (784)
|+.+++.+
T Consensus 248 L~~l~l~~ 255 (350)
T 4ay9_X 248 LMEASLTY 255 (350)
T ss_dssp CCEEECSC
T ss_pred hhhCcCCC
Confidence 77777765
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.4e-09 Score=106.32 Aligned_cols=132 Identities=17% Similarity=0.123 Sum_probs=84.8
Q ss_pred CCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCC
Q 003957 600 PNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIA 679 (784)
Q Consensus 600 ~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~ 679 (784)
++|++|++++ +.++.... ..+.++++|++|++++|.+.. .......++++|+.|+|++|. ++......+..+++
T Consensus 40 ~~L~~L~Ls~--n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHD--NQITKLEP-GVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCS--SCCCCCCT-TTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCCCEEEcCC--CccCccCH-HHhhCccCCcEEECCCCCCCC--cChhhcccCCCcCEEECCCCc-CCccChhHhCcchh
Confidence 4555555555 23332111 123356677777777776533 111122457778888888775 55443344567888
Q ss_pred CCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCcC
Q 003957 680 LEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 680 L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~~ 745 (784)
|+.|++++|.+ ..++..+..+++|+.|++++|... .+|. +..+++|+.|++++|+...
T Consensus 114 L~~L~Ls~N~l----~~lp~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 114 LKELFMCCNKL----TELPRGIERLTHLTHLALDQNQLK----SIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCEEECCSSCC----CSCCTTGGGCTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred hCeEeccCCcc----cccCcccccCCCCCEEECCCCcCC----ccCHHHHhCCCCCCEEEeeCCCccC
Confidence 88999988876 455666788889999999887655 3443 7888899999999887543
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-07 Score=91.49 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=63.1
Q ss_pred HHHHHHcCCCCCeEecCCCCccCHHHHHHHHHh---CCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcC
Q 003957 309 LEFISKYCVSLGYINIKGCVSVTDVCISNLIRR---CVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLA 385 (784)
Q Consensus 309 l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~---~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l 385 (784)
+..+...+++|++|+|++|..+++.++..+... +++|++|+|++|.+++.+...++..+ ...
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L---------------~~n 92 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML---------------KVN 92 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH---------------HHC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH---------------HhC
Confidence 444444566666666666545565555444432 45666666666666666655543222 334
Q ss_pred CCccEEEecCCCCCCHHHHHHHH---HhCccccEEEe--cCCcCchhhhhhcc-----cCCcCEEEecCCccch
Q 003957 386 SNLQMLHMACCNGVDGMYLLELM---CQARKLKSLCL--SGTQLADKALYNFS-----GSSLEMLDVSDTMISG 449 (784)
Q Consensus 386 ~~L~~L~L~~c~~l~~~~l~~l~---~~~~~L~~L~L--s~~~l~~~~~~~l~-----~~~L~~L~Ls~~~i~~ 449 (784)
+.|++|+|++|. +++.+...+. ...+.|+.|+| ++|.+++.+...+. .++|++|+|++|.+..
T Consensus 93 ~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 93 NTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp SSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred CCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 456666665543 3444433332 23344555555 44555544433332 2445555555554443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.9e-08 Score=100.04 Aligned_cols=101 Identities=15% Similarity=0.118 Sum_probs=69.0
Q ss_pred HhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEe
Q 003957 340 RRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCL 419 (784)
Q Consensus 340 ~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L 419 (784)
..+++|+.|++++|.++. ++ .+..+++|+.|++++|..-.-. . +..+++|+.|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~--------------------l~-~l~~l~~L~~L~L~~N~i~~~~---~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQS--------------------LA-GMQFFTNLKELHLSHNQISDLS---P-LKDLTKLEELSV 92 (263)
T ss_dssp HHHTTCSEEECTTSCCCC--------------------CT-TGGGCTTCCEEECCSSCCCCCG---G-GTTCSSCCEEEC
T ss_pred hhcCcCcEEECcCCCccc--------------------ch-HHhhCCCCCEEECCCCccCCCh---h-hccCCCCCEEEC
Confidence 356777888887777665 22 2366788888888887643211 1 367888888888
Q ss_pred cCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCC
Q 003957 420 SGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 420 s~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c 470 (784)
++|.+++... +..++|++|++++|.++... .+..+++|++|+++++
T Consensus 93 ~~N~l~~l~~--~~~~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 93 NRNRLKNLNG--IPSACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNN 138 (263)
T ss_dssp CSSCCSCCTT--CCCSSCCEEECCSSCCSBSG---GGTTCTTCCEEECTTS
T ss_pred CCCccCCcCc--cccCcccEEEccCCccCCCh---hhcCcccccEEECCCC
Confidence 8887776432 22378888888888776542 2467788888888776
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-07 Score=91.26 Aligned_cols=122 Identities=12% Similarity=0.153 Sum_probs=98.8
Q ss_pred HHHHHHHHhCCCCCEEEeeCC-CCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHH---H
Q 003957 333 VCISNLIRRCVKLQSIIVCDT-SFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLEL---M 408 (784)
Q Consensus 333 ~~l~~l~~~~~~L~~L~Ls~~-~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l---~ 408 (784)
..+..++..+++|++|+|++| .+++.++..++..+ ...++|++|+|++|. +++.+...+ .
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L---------------~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L 89 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEAL---------------KTNTYVKKFSIVGTR-SNDPVAFALAEML 89 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHH---------------TTCCSCCEEECTTSC-CCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHH---------------HhCCCcCEEECcCCC-CChHHHHHHHHHH
Confidence 456677778999999999999 99999998875433 567899999999986 566665444 3
Q ss_pred HhCccccEEEecCCcCchhhhhhcc-----cCCcCEEEe--cCCccchhhH---HHHHhcCCCccEEeccCC
Q 003957 409 CQARKLKSLCLSGTQLADKALYNFS-----GSSLEMLDV--SDTMISGAAL---AYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 409 ~~~~~L~~L~Ls~~~l~~~~~~~l~-----~~~L~~L~L--s~~~i~~~~l---~~~~~~l~~L~~L~L~~c 470 (784)
...+.|+.|+|++|.+++.+...+. .++|++|+| ++|.+++.+. ...+...++|++|++++|
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 5678999999999999998866654 478999999 7899998774 444567799999999887
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.1e-08 Score=113.92 Aligned_cols=191 Identities=12% Similarity=0.051 Sum_probs=115.4
Q ss_pred CcceEEecCCCCCCChhhHHHHHHhhCCccceEecccccccChHHHHHHHHhCCCCceEEeccCCCCCcCCceeeeecCC
Q 003957 182 EAVQEVNICKCHALHLESAVECFSKSFPSLRTIKAAYHLDFKTLNLHKLVQKCPMLCEVDLTVDPSPVIPTKVSVVSSSS 261 (784)
Q Consensus 182 ~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~LdLs~~~~~~i~~~~~~~~~~~ 261 (784)
.+++.|+++++.-...+. ..+++|++|++++ +.++. ++ ..+++|++|+|++|.-..++.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~------~l~~~L~~L~Ls~-N~l~~--ip---~~l~~L~~L~Ls~N~l~~ip~--------- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPD------NLPPQITVLEITQ-NALIS--LP---ELPASLEYLDACDNRLSTLPE--------- 117 (571)
T ss_dssp TTCSEEECCSSCCSCCCS------CCCTTCSEEECCS-SCCSC--CC---CCCTTCCEEECCSSCCSCCCC---------
T ss_pred CCccEEEeCCCCCCccCH------hHcCCCCEEECcC-CCCcc--cc---cccCCCCEEEccCCCCCCcch---------
Confidence 378888888764322211 1247788888888 55653 22 357888998888653222211
Q ss_pred ccccccccccccCCCcccccccccCCCCCCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHh
Q 003957 262 ALMPLVLNKSIAGDSSLYATSVYHSGPSPSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRR 341 (784)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~ 341 (784)
.. .+|++|+|++|.. +. ++. .+++|++|++++|. ++. ++. .
T Consensus 118 -------------------------l~--~~L~~L~Ls~N~l-~~--lp~---~l~~L~~L~Ls~N~-l~~--lp~---~ 158 (571)
T 3cvr_A 118 -------------------------LP--ASLKHLDVDNNQL-TM--LPE---LPALLEYINADNNQ-LTM--LPE---L 158 (571)
T ss_dssp -------------------------CC--TTCCEEECCSSCC-SC--CCC---CCTTCCEEECCSSC-CSC--CCC---C
T ss_pred -------------------------hh--cCCCEEECCCCcC-CC--CCC---cCccccEEeCCCCc-cCc--CCC---c
Confidence 11 2788888888753 32 122 47788888888854 332 111 4
Q ss_pred CCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHH-HHHHhCccccEEEec
Q 003957 342 CVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLL-ELMCQARKLKSLCLS 420 (784)
Q Consensus 342 ~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~-~l~~~~~~L~~L~Ls 420 (784)
+++|+.|++++|.++. +|. +. ++|+.|+|++|..-.-..+. .+....+.|+.|+++
T Consensus 159 l~~L~~L~Ls~N~L~~--------------------lp~-l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLTF--------------------LPE-LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCR 215 (571)
T ss_dssp CTTCCEEECCSSCCSC--------------------CCC-CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECC
T ss_pred CCCcCEEECCCCCCCC--------------------cch-hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecC
Confidence 6788888888887765 344 22 78888888887542100000 111222334888888
Q ss_pred CCcCchhhhhhcccCCcCEEEecCCccchhhHHHH
Q 003957 421 GTQLADKALYNFSGSSLEMLDVSDTMISGAALAYM 455 (784)
Q Consensus 421 ~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~ 455 (784)
+|.++......+..++|+.|+|++|.++...+..+
T Consensus 216 ~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 216 ENRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp SSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred CCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 88887654333336788888888888877655443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.8e-09 Score=102.93 Aligned_cols=149 Identities=14% Similarity=-0.023 Sum_probs=73.2
Q ss_pred CCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCC
Q 003957 576 RRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGL 655 (784)
Q Consensus 576 ~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L 655 (784)
++|++|++++|............+++|++|++++ +.++... ...+..+++|++|++++|.+..- ......++++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L 102 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG--NKLQSLP-NGVFNKLTSLTYLNLSTNQLQSL--PNGVFDKLTQL 102 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS--SCCCCCC-TTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCC--CccCccC-hhhcCCCCCcCEEECCCCcCCcc--CHhHhcCccCC
Confidence 4677777777621122222223446666666666 3444211 11223456666666666654321 11112345666
Q ss_pred cEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCE
Q 003957 656 ISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLST 735 (784)
Q Consensus 656 ~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~ 735 (784)
+.|++++|. ++......+.++++|+.|++++|.+ . ......+..+++|+.|++++|+.. ..+++|+.
T Consensus 103 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l--~-~~~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~ 169 (208)
T 2o6s_A 103 KELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQL--K-SVPDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRY 169 (208)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--S-CCCTTTTTTCTTCCEEECCSCCBC---------CCTTTTHH
T ss_pred CEEEcCCCc-CcccCHhHhccCCcCCEEECCCCcc--c-eeCHHHhccCCCccEEEecCCCee---------cCCCCHHH
Confidence 666666654 3332222344566666666666644 2 222233455566666666655433 23345555
Q ss_pred EEecCCC
Q 003957 736 VKITKCK 742 (784)
Q Consensus 736 L~is~C~ 742 (784)
|+++.+.
T Consensus 170 L~~~~n~ 176 (208)
T 2o6s_A 170 LSEWINK 176 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.68 E-value=4.7e-09 Score=104.60 Aligned_cols=109 Identities=21% Similarity=0.144 Sum_probs=62.3
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcC
Q 003957 625 NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKM 704 (784)
Q Consensus 625 ~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l 704 (784)
.+++|++|++++|.+..- ......++++|+.|+|++|. ++......+.++++|+.|+|++|.+ . ...+..+..+
T Consensus 54 ~l~~L~~L~Ls~N~i~~~--~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l--~-~~~~~~~~~l 127 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQISEL--APDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKI--N-CLRVDAFQDL 127 (220)
T ss_dssp TCTTCCEEECCSSCCCEE--CTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--C-CCCTTTTTTC
T ss_pred CCCCCCEEECCCCcCCCc--CHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCC--C-EeCHHHcCCC
Confidence 345566666665554321 01112345666666666655 4433333345677777777777754 3 3334456667
Q ss_pred CCCceeccccccccCCCCCccc--ccCCCCCCEEEecCCCC
Q 003957 705 PMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKS 743 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~ 743 (784)
++|+.|+|++|... .++. +..+++|++|++++|+.
T Consensus 128 ~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 128 HNLNLLSLYDNKLQ----TIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCCEEECCSSCCS----CCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCEEECCCCcCC----EECHHHHhCCCCCCEEEeCCCCc
Confidence 77777777776655 2333 66677777777777664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=5.8e-10 Score=127.27 Aligned_cols=103 Identities=15% Similarity=0.023 Sum_probs=62.5
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPML 707 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L 707 (784)
.|+.|++++|.+..- .. ..++++|+.|+|++|. ++. .+..+.++++|+.|+|++|.+ ..++ .++.+++|
T Consensus 442 ~L~~L~Ls~n~l~~l---p~-~~~l~~L~~L~Ls~N~-l~~-lp~~~~~l~~L~~L~Ls~N~l----~~lp-~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL---CH-LEQLLLVTHLDLSHNR-LRA-LPPALAALRCLEVLQASDNAL----ENVD-GVANLPRL 510 (567)
T ss_dssp TCSEEECTTSCCSSC---CC-GGGGTTCCEEECCSSC-CCC-CCGGGGGCTTCCEEECCSSCC----CCCG-GGTTCSSC
T ss_pred CceEEEecCCCCCCC---cC-ccccccCcEeecCccc-ccc-cchhhhcCCCCCEEECCCCCC----CCCc-ccCCCCCC
Confidence 567777777765441 11 3456677777777765 442 223455677777777777755 3344 56667777
Q ss_pred ceeccccccccCCCCCccc-ccCCCCCCEEEecCCCC
Q 003957 708 RLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKS 743 (784)
Q Consensus 708 ~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~ 743 (784)
+.|+|++|... +. ..|. +..+++|+.|++++|+.
T Consensus 511 ~~L~Ls~N~l~-~~-~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 511 QELLLCNNRLQ-QS-AAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CEEECCSSCCC-SS-STTGGGGGCTTCCEEECTTSGG
T ss_pred cEEECCCCCCC-CC-CCcHHHhcCCCCCEEEecCCcC
Confidence 77777776554 11 1144 66777777777777764
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.3e-09 Score=100.86 Aligned_cols=82 Identities=15% Similarity=0.075 Sum_probs=37.6
Q ss_pred CCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHH--HHhcCCCCceeccccccccCCCCCccc---
Q 003957 652 WPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILD--AASKMPMLRLVSLDLCDASDGNFEIPD--- 726 (784)
Q Consensus 652 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~--~l~~l~~L~~L~L~~c~~~~~~~~l~~--- 726 (784)
+++|+.|++++|. ++......+..+++|+.|++++|.+ ..++. .+..+++|+.|++++|+.. .+|.
T Consensus 63 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i----~~~~~~~~l~~l~~L~~L~l~~N~i~----~~~~~~~ 133 (176)
T 1a9n_A 63 LRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSL----VELGDLDPLASLKSLTYLCILRNPVT----NKKHYRL 133 (176)
T ss_dssp CSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCCC----CCGGGGGGGGGCTTCCEEECCSSGGG----GSTTHHH
T ss_pred CCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCcC----CcchhhHhhhcCCCCCEEEecCCCCC----CcHhHHH
Confidence 4455555555543 3322111223455555555555544 22222 3445555555555555443 1122
Q ss_pred --ccCCCCCCEEEecCCC
Q 003957 727 --YADRYSLSTVKITKCK 742 (784)
Q Consensus 727 --~~~~~~L~~L~is~C~ 742 (784)
+..+++|+.||+++|+
T Consensus 134 ~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 134 YVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHHHCTTCSEETTEECC
T ss_pred HHHHHCCccceeCCCcCC
Confidence 3445555555555554
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.8e-09 Score=114.93 Aligned_cols=157 Identities=21% Similarity=0.151 Sum_probs=95.1
Q ss_pred CCCcEEEeeeeccChHHHHHHHh-hCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCC
Q 003957 551 PMLELVVLYFQVMSDSIIINILE-SLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSE 628 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~-~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~ 628 (784)
+.++.|+++.|.++.... ..+. ++++|+.|++++|. ..... .....+++|++|++++ +.++.... ..+.++++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~--N~l~~~~~-~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSS--NHLHTLDE-FLFSDLQA 113 (361)
T ss_dssp TTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCS--SCCCEECT-TTTTTCTT
T ss_pred CCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCC--CcCCcCCH-HHhCCCcC
Confidence 468889998888776422 2233 67888888888883 32222 2233557888888888 45653221 22346778
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHh---hCCCCCCEEEcccCCCCCChhHHHHHHhcCC
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSL---FNCIALEDLLLRHNGPGIPRDFILDAASKMP 705 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l---~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~ 705 (784)
|++|++++|.+... ......++++|+.|+|++|. ++......+ ..+++|+.|+|++|.+ . ......+..++
T Consensus 114 L~~L~L~~N~i~~~--~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l--~-~l~~~~~~~l~ 187 (361)
T 2xot_A 114 LEVLLLYNNHIVVV--DRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL--K-KLPLTDLQKLP 187 (361)
T ss_dssp CCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCC--C-CCCHHHHHHSC
T ss_pred CCEEECCCCcccEE--CHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCC--C-ccCHHHhhhcc
Confidence 88888888776531 11122457778888887766 443322233 3577788888888765 3 33344566666
Q ss_pred C--Cceecccccccc
Q 003957 706 M--LRLVSLDLCDAS 718 (784)
Q Consensus 706 ~--L~~L~L~~c~~~ 718 (784)
. |+.|.|.+|+..
T Consensus 188 ~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 188 AWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHTTEECCSSCEE
T ss_pred HhhcceEEecCCCcc
Confidence 5 377777776655
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.5e-07 Score=97.82 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=49.9
Q ss_pred hhhcCCCccEEEeccc-cC--------cccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChH
Q 003957 496 ELGRTRKLEEIVLGWG-FS--------FLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDS 566 (784)
Q Consensus 496 ~l~~l~~L~~L~L~~~-~~--------~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~ 566 (784)
.+..+++|+.|.++.. .. ......++..+++|+.|.+.++..+.- ..+ ..++|++|++.++.+++.
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEECSBCCHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEecCCCChH
Confidence 4455778888888432 11 112345556677788888876632211 111 256777777776677776
Q ss_pred HHHHHHh-hCCCCcEEEec
Q 003957 567 IIINILE-SLRRLQVLAIC 584 (784)
Q Consensus 567 ~l~~~~~-~l~~L~~L~Ls 584 (784)
++..+.. .+++|+.|+|+
T Consensus 209 ~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHHHccCCCCcEEEEe
Confidence 6655543 56777777765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-09 Score=124.15 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=44.6
Q ss_pred hhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-Chh--HHHHhhc
Q 003957 521 KPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDL--SISSFKL 597 (784)
Q Consensus 521 ~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~--~~~~l~~ 597 (784)
+..+++|+.|+++++ .++. +..++. +++|+.|+++.|.+++...+..+.++++|+.|++++|. ... ....+..
T Consensus 482 ~~~l~~L~~L~Ls~N-~l~~--lp~l~~-l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 557 (567)
T 1dce_A 482 LAALRCLEVLQASDN-ALEN--VDGVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557 (567)
T ss_dssp GGGCTTCCEEECCSS-CCCC--CGGGTT-CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHH
T ss_pred hhcCCCCCEEECCCC-CCCC--CcccCC-CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHH
Confidence 444555666666655 2222 112333 66677777776666653213446677777777777772 211 1222333
Q ss_pred CCCCccEEEc
Q 003957 598 PLPNLRKLKL 607 (784)
Q Consensus 598 ~~~~L~~L~L 607 (784)
.+|+|+.|++
T Consensus 558 ~lp~L~~L~l 567 (567)
T 1dce_A 558 MLPSVSSILT 567 (567)
T ss_dssp HCTTCSEEEC
T ss_pred HCcccCccCC
Confidence 4577777753
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-08 Score=96.26 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=39.5
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHH-HHHhhCCCCCCEEEcccCCCCCChhHHHH----
Q 003957 625 NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYG-VTSLFNCIALEDLLLRHNGPGIPRDFILD---- 699 (784)
Q Consensus 625 ~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~-~~~l~~~~~L~~L~L~~n~~gl~~~~~~~---- 699 (784)
.+++|+.|++++|.+..- ...+..++++|+.|++++|. ++... +..+..+++|+.|++++|.+ ..++.
T Consensus 62 ~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i----~~~~~~~~~ 134 (176)
T 1a9n_A 62 LLRRLKTLLVNNNRICRI--GEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV----TNKKHYRLY 134 (176)
T ss_dssp CCSSCCEEECCSSCCCEE--CSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG----GGSTTHHHH
T ss_pred cCCCCCEEECCCCccccc--CcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC----CCcHhHHHH
Confidence 344555555555543321 01112235555555555554 33211 12344555666666665543 22222
Q ss_pred HHhcCCCCceeccccccc
Q 003957 700 AASKMPMLRLVSLDLCDA 717 (784)
Q Consensus 700 ~l~~l~~L~~L~L~~c~~ 717 (784)
.+..+++|+.|+++.|..
T Consensus 135 ~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 135 VIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHHCTTCSEETTEECCH
T ss_pred HHHHCCccceeCCCcCCH
Confidence 355556666666655543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.57 E-value=8.3e-09 Score=102.79 Aligned_cols=133 Identities=15% Similarity=0.103 Sum_probs=63.4
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCC
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSEL 629 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L 629 (784)
++|+.|+++.|.++... ...+.++++|+.|++++|. ....... +.++++|
T Consensus 32 ~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~----------------------------~~~l~~L 82 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDA----------------------------FQGLRSL 82 (220)
T ss_dssp TTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTT----------------------------TTTCSSC
T ss_pred cCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHH----------------------------hhCCcCC
Confidence 46777777766665421 1134455666666666662 2111111 1233444
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCce
Q 003957 630 VELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRL 709 (784)
Q Consensus 630 ~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~ 709 (784)
++|++++|.+.. .......++++|+.|+|++|. ++...+..+.++++|+.|+|++|.+ . ...+..+..+++|+.
T Consensus 83 ~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l--~-~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 83 NSLVLYGNKITE--LPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKL--Q-TIAKGTFSPLRAIQT 156 (220)
T ss_dssp CEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--S-CCCTTTTTTCTTCCE
T ss_pred CEEECCCCcCCc--cCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcC--C-EECHHHHhCCCCCCE
Confidence 444444444332 111112334555555555544 3333333444556666666666644 2 222233555566666
Q ss_pred ecccccccc
Q 003957 710 VSLDLCDAS 718 (784)
Q Consensus 710 L~L~~c~~~ 718 (784)
|++++|+..
T Consensus 157 L~L~~N~~~ 165 (220)
T 2v9t_B 157 MHLAQNPFI 165 (220)
T ss_dssp EECCSSCEE
T ss_pred EEeCCCCcC
Confidence 666655543
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=9.1e-09 Score=102.51 Aligned_cols=86 Identities=10% Similarity=-0.007 Sum_probs=39.6
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCc
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELV 630 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~ 630 (784)
+.++.|+++.|.++.......+..+++|+.|++++|............+++|++|++++ +.++.... ..+.++++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~--N~l~~~~~-~~~~~l~~L~ 108 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS--NRLENVQH-KMFKGLESLK 108 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--SCCCCCCG-GGGTTCSSCC
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC--CccCccCH-hHhcCCcCCC
Confidence 35677777766666532222345666677777666621111111122335555555555 23332111 1123344455
Q ss_pred EEEecCCCC
Q 003957 631 ELSLVGCTL 639 (784)
Q Consensus 631 ~L~Ls~c~~ 639 (784)
+|++++|.+
T Consensus 109 ~L~Ls~N~l 117 (220)
T 2v70_A 109 TLMLRSNRI 117 (220)
T ss_dssp EEECTTSCC
T ss_pred EEECCCCcC
Confidence 555554443
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.7e-08 Score=107.22 Aligned_cols=155 Identities=17% Similarity=0.113 Sum_probs=110.9
Q ss_pred CCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCC
Q 003957 576 RRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPG 654 (784)
Q Consensus 576 ~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~ 654 (784)
+.++.|++++| +.......+...+++|++|++++ +.++.... ..+.++++|++|+|++|.+..- ......++++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~--N~i~~i~~-~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH--NHLNFISS-EAFVPVPNLRYLDLSSNHLHTL--DEFLFSDLQA 113 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCS--SCCCEECT-TTTTTCTTCCEEECCSSCCCEE--CTTTTTTCTT
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCC--CcCCccCh-hhccCCCCCCEEECCCCcCCcC--CHHHhCCCcC
Confidence 36899999999 33333222332679999999999 56764332 2345788999999999986541 1223356899
Q ss_pred CcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHH-HH---hcCCCCceeccccccccCCCCCccc--cc
Q 003957 655 LISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILD-AA---SKMPMLRLVSLDLCDASDGNFEIPD--YA 728 (784)
Q Consensus 655 L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~-~l---~~l~~L~~L~L~~c~~~~~~~~l~~--~~ 728 (784)
|+.|+|++|. ++......+.++++|+.|+|++|.+ . .++. .+ ..+++|+.|+|++|... .+|. +.
T Consensus 114 L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l--~--~l~~~~~~~~~~l~~L~~L~L~~N~l~----~l~~~~~~ 184 (361)
T 2xot_A 114 LEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQI--S--RFPVELIKDGNKLPKLMLLDLSSNKLK----KLPLTDLQ 184 (361)
T ss_dssp CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC--C--SCCGGGTC----CTTCCEEECCSSCCC----CCCHHHHH
T ss_pred CCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcC--C--eeCHHHhcCcccCCcCCEEECCCCCCC----ccCHHHhh
Confidence 9999999987 6655556677899999999999976 3 3333 23 57899999999998766 4454 66
Q ss_pred CCCC--CCEEEecCCCCc
Q 003957 729 DRYS--LSTVKITKCKSK 744 (784)
Q Consensus 729 ~~~~--L~~L~is~C~~~ 744 (784)
.++. |+.|++++|+-.
T Consensus 185 ~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 185 KLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HSCHHHHTTEECCSSCEE
T ss_pred hccHhhcceEEecCCCcc
Confidence 6666 488999998754
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.46 E-value=6.9e-08 Score=96.73 Aligned_cols=109 Identities=15% Similarity=0.057 Sum_probs=86.4
Q ss_pred CCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCC
Q 003957 627 SELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPM 706 (784)
Q Consensus 627 ~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~ 706 (784)
++|+.|++++|.+.... .....++++|+.|+|++|. ++......+.++++|+.|+|++|.+ . ......+..+++
T Consensus 40 ~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l--~-~l~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLE--PGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQL--T-VLPSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--C-CCCTTTTTTCTT
T ss_pred CCCCEEEcCCCccCccC--HHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcC--C-ccChhHhCcchh
Confidence 68999999999876521 2223568999999999987 5544444567899999999999976 4 333455788999
Q ss_pred CceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCcC
Q 003957 707 LRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 707 L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~~ 745 (784)
|+.|++++|... .+|. +..+++|+.|++++|....
T Consensus 114 L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 114 LKELFMCCNKLT----ELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp CCEEECCSSCCC----SCCTTGGGCTTCSEEECCSSCCCC
T ss_pred hCeEeccCCccc----ccCcccccCCCCCEEECCCCcCCc
Confidence 999999998776 5677 8899999999999997543
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.4e-07 Score=91.68 Aligned_cols=105 Identities=24% Similarity=0.213 Sum_probs=62.1
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPML 707 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L 707 (784)
+|++|++++|.+..- .....++++|+.|+|++|. ++......+.++++|+.|+|++|.+ . ...+..+.++++|
T Consensus 32 ~l~~L~L~~n~i~~i---p~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l--~-~i~~~~f~~l~~L 104 (193)
T 2wfh_A 32 DVTELYLDGNQFTLV---PKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRL--R-CIPPRTFDGLKSL 104 (193)
T ss_dssp TCCEEECCSSCCCSC---CGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--C-BCCTTTTTTCTTC
T ss_pred CCCEEECCCCcCchh---HHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCcc--C-EeCHHHhCCCCCC
Confidence 566666666554321 0122346666666666655 4433334455677777777777754 3 3334456677777
Q ss_pred ceeccccccccCCCCCccc--ccCCCCCCEEEecCCCC
Q 003957 708 RLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKS 743 (784)
Q Consensus 708 ~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~ 743 (784)
+.|+|++|... .+|. +..+++|+.|++++|+-
T Consensus 105 ~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 105 RLLSLHGNDIS----VVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CEEECCSSCCC----BCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEEECCCCCCC----eeChhhhhcCccccEEEeCCCCe
Confidence 77777776655 3343 66677777777777653
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3.8e-07 Score=99.34 Aligned_cols=132 Identities=18% Similarity=0.230 Sum_probs=60.2
Q ss_pred HhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChH---HHHHH
Q 003957 572 LESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSD---SQLII 648 (784)
Q Consensus 572 ~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~---~~~~~ 648 (784)
+.+|++|+.+++..+........|.. .+|+.+.+.. .++..+- ..+.+|++|+.+++.++....+. .....
T Consensus 222 F~~~~~L~~l~l~~~l~~I~~~aF~~--~~L~~i~lp~---~i~~I~~-~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a 295 (401)
T 4fdw_A 222 FLKTSQLKTIEIPENVSTIGQEAFRE--SGITTVKLPN---GVTNIAS-RAFYYCPELAEVTTYGSTFNDDPEAMIHPYC 295 (401)
T ss_dssp TTTCTTCCCEECCTTCCEECTTTTTT--CCCSEEEEET---TCCEECT-TTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred hhCCCCCCEEecCCCccCcccccccc--CCccEEEeCC---CccEECh-hHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence 44555666666554422111112221 4566666643 2222111 12345667777777665432000 01112
Q ss_pred HhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccc
Q 003957 649 SQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCD 716 (784)
Q Consensus 649 ~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~ 716 (784)
..+|++|+.+.|.. .++..+...|.+|++|+.+.|..+ +. .....++.++ +|+.+.+.++.
T Consensus 296 F~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~---l~-~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 296 LEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN---VT-QINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT---CC-EECTTSSSSS-CCCEEEECCSS
T ss_pred hhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc---cc-EEcHHhCCCC-CCCEEEEcCCC
Confidence 34566666666653 244444444555666666666443 12 2223345555 56666665543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.1e-07 Score=89.05 Aligned_cols=109 Identities=19% Similarity=0.141 Sum_probs=73.3
Q ss_pred CCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCC
Q 003957 627 SELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPM 706 (784)
Q Consensus 627 ~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~ 706 (784)
++|++|++++|.... .......++++|+.|++++|. ++......+.++++|+.|++++|.+ . ......+..+++
T Consensus 28 ~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l--~-~~~~~~~~~l~~ 101 (177)
T 2o6r_A 28 SSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKL--Q-SLPNGVFDKLTQ 101 (177)
T ss_dssp TTCSEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--C-CCCTTTTTTCTT
T ss_pred CCCcEEEeCCCcccE--eCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCc--c-ccCHHHhhCCcc
Confidence 467777777766543 111122456778888887765 5533333456788888888888865 3 333445677888
Q ss_pred CceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCcC
Q 003957 707 LRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSKN 745 (784)
Q Consensus 707 L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~~ 745 (784)
|+.|++++|... .+|. +..+++|++|++++|+...
T Consensus 102 L~~L~l~~N~l~----~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 102 LKELALDTNQLK----SVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCEEECCSSCCS----CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCEEECcCCcce----EeCHHHhcCCcccCEEEecCCCeec
Confidence 999999887655 3455 6778899999999887543
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.7e-07 Score=91.60 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=103.3
Q ss_pred CCccEEecCCCC-CCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCc
Q 003957 291 SKITKLTLEGRS-DMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPY 369 (784)
Q Consensus 291 ~~L~~L~Ls~~~-~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~ 369 (784)
-.|+...+.+.. .++.. ......+++|++|++++|. ++. ++ .+.++++|+.|++++|.++.
T Consensus 23 l~l~~~~l~~~~~~l~~l--~~~~~~l~~L~~L~ls~n~-l~~--l~-~~~~l~~L~~L~l~~n~l~~------------ 84 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKM--DATLSTLKACKHLALSTNN-IEK--IS-SLSGMENLRILSLGRNLIKK------------ 84 (198)
T ss_dssp TTCSEEECCBCCTTCCCC--HHHHHHTTTCSEEECSEEE-ESC--CC-CHHHHTTCCEEEEEEEEECS------------
T ss_pred cchheeEeccccCcHhhh--hHHHhcCCCCCEEECCCCC-Ccc--cc-ccccCCCCCEEECCCCCccc------------
Confidence 356666666542 12221 1123458899999999864 333 22 45678999999999998774
Q ss_pred cCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhh-hhcc-cCCcCEEEecCCcc
Q 003957 370 CNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKAL-YNFS-GSSLEMLDVSDTMI 447 (784)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~-~~l~-~~~L~~L~Ls~~~i 447 (784)
+|..+..+++|+.|++++|.... ++. ...+++|+.|++++|.+++... ..+. .++|++|++++|.+
T Consensus 85 --------l~~~~~~~~~L~~L~L~~N~l~~---l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 85 --------IENLDAVADTLEELWISYNQIAS---LSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp --------CSSHHHHHHHCSEEEEEEEECCC---HHH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred --------ccchhhcCCcCCEEECcCCcCCc---CCc-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 45555667899999999986533 333 3778999999999999887543 4444 68999999999977
Q ss_pred chhh---------HHHHHhcCCCccEEe
Q 003957 448 SGAA---------LAYMVHGNSGLKYLN 466 (784)
Q Consensus 448 ~~~~---------l~~~~~~l~~L~~L~ 466 (784)
+... ....+..+++|++|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC
Confidence 5442 223457899999997
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.7e-07 Score=110.37 Aligned_cols=108 Identities=15% Similarity=0.039 Sum_probs=60.9
Q ss_pred hcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhc
Q 003957 624 QNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASK 703 (784)
Q Consensus 624 ~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~ 703 (784)
..++.|+.|+|++|.+.. ....+ .++++|+.|+|++|. ++ ..+..+.++++|+.|+|++|.+ ..++..++.
T Consensus 221 ~~l~~L~~L~Ls~n~l~~--l~~~~-~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~Ls~N~l----~~lp~~~~~ 291 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFN--ISANI-FKYDFLTRLYLNGNS-LT-ELPAEIKNLSNLRVLDLSHNRL----TSLPAELGS 291 (727)
T ss_dssp -CCCCCCEEECTTSCCSC--CCGGG-GGCCSCSCCBCTTSC-CS-CCCGGGGGGTTCCEEECTTSCC----SSCCSSGGG
T ss_pred ccCCCCcEEECCCCCCCC--CChhh-cCCCCCCEEEeeCCc-Cc-ccChhhhCCCCCCEEeCcCCcC----CccChhhcC
Confidence 345566666666665442 11111 146666666666654 43 2223445666666666666655 344555666
Q ss_pred CCCCceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCc
Q 003957 704 MPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 704 l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~ 744 (784)
+++|+.|+|++|... .+|. +..+++|+.|+|++|+..
T Consensus 292 l~~L~~L~L~~N~l~----~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT----TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GTTCSEEECCSSCCC----CCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCCEEECCCCCCC----ccChhhhcCCCccEEeCCCCccC
Confidence 666666666666443 4455 666666777777666643
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.27 E-value=5.5e-08 Score=94.52 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=35.4
Q ss_pred CCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCC
Q 003957 652 WPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADR 730 (784)
Q Consensus 652 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~ 730 (784)
+++|+.|+|++|. ++...+..+.++++|++|++++|.+ . ...+..+.++++|+.|++++|... + ..|. +..+
T Consensus 53 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l--~-~~~~~~~~~l~~L~~L~L~~N~l~-~--~~~~~~~~l 125 (192)
T 1w8a_A 53 LPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKI--K-EISNKMFLGLHQLKTLNLYDNQIS-C--VMPGSFEHL 125 (192)
T ss_dssp CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCCC--C-EECSSSSTTCTTCCEEECCSSCCC-E--ECTTSSTTC
T ss_pred CCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCcC--C-ccCHHHhcCCCCCCEEECCCCcCC-e--eCHHHhhcC
Confidence 4444444444433 3322223333444555555555433 2 222222444455555555544433 1 0122 4445
Q ss_pred CCCCEEEecCCC
Q 003957 731 YSLSTVKITKCK 742 (784)
Q Consensus 731 ~~L~~L~is~C~ 742 (784)
++|++|++++|+
T Consensus 126 ~~L~~L~L~~N~ 137 (192)
T 1w8a_A 126 NSLTSLNLASNP 137 (192)
T ss_dssp TTCCEEECTTCC
T ss_pred CCCCEEEeCCCC
Confidence 555555555544
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.5e-07 Score=91.98 Aligned_cols=126 Identities=25% Similarity=0.241 Sum_probs=68.5
Q ss_pred HHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHH
Q 003957 571 ILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIIS 649 (784)
Q Consensus 571 ~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~ 649 (784)
.+..+++|++|++++| +.... .+ ..+++|++|+++++ .++. +......+++|++|++++|....-. . .
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~-~~l~~L~~L~l~~n--~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~---~-~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SL-SGMENLRILSLGRN--LIKK--IENLDAVADTLEELWISYNQIASLS---G-I 111 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CH-HHHTTCCEEEEEEE--EECS--CSSHHHHHHHCSEEEEEEEECCCHH---H-H
T ss_pred HHhcCCCCCEEECCCCCCcccc--cc-ccCCCCCEEECCCC--Cccc--ccchhhcCCcCCEEECcCCcCCcCC---c-c
Confidence 4455666666666665 22211 12 22356666666663 3432 1222233457777777777655421 1 2
Q ss_pred hcCCCCcEEeecCCCCCCH-HHHHHhhCCCCCCEEEcccCCCCCChhHH----------HHHHhcCCCCceec
Q 003957 650 QGWPGLISLHLEECGDITA-YGVTSLFNCIALEDLLLRHNGPGIPRDFI----------LDAASKMPMLRLVS 711 (784)
Q Consensus 650 ~~~~~L~~L~L~~c~~i~~-~~~~~l~~~~~L~~L~L~~n~~gl~~~~~----------~~~l~~l~~L~~L~ 711 (784)
.++++|+.|++++|. ++. ..+..+..+++|+.|++++|.+ . ..+ ...+..+++|+.|+
T Consensus 112 ~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l--~-~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL--Y-NDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH--H-HHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc--c-cccccccchHHHHHHHHHhCCCcEEEC
Confidence 346677777777766 443 2334566777777777777744 2 111 12366677777765
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-07 Score=101.94 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=37.9
Q ss_pred cCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--cc
Q 003957 651 GWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YA 728 (784)
Q Consensus 651 ~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~ 728 (784)
+|.+|+.+.+... ++..+...+.+|++|+.++|..+ +. .....++.+|.+|+.+.+..+ ++ .++. |.
T Consensus 295 ~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~---v~-~I~~~aF~~c~~L~~i~lp~~--l~---~I~~~aF~ 363 (394)
T 4fs7_A 295 GCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL---VE-EIGKRSFRGCTSLSNINFPLS--LR---KIGANAFQ 363 (394)
T ss_dssp TCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT---CC-EECTTTTTTCTTCCEECCCTT--CC---EECTTTBT
T ss_pred ccccccccccccc--cceechhhhcCCCCCCEEEeCCc---cc-EEhHHhccCCCCCCEEEECcc--cc---EehHHHhh
Confidence 4555555555432 33333334445666666665442 12 222334555666666665432 21 1222 56
Q ss_pred CCCCCCEEEecC
Q 003957 729 DRYSLSTVKITK 740 (784)
Q Consensus 729 ~~~~L~~L~is~ 740 (784)
+|++|+++++..
T Consensus 364 ~C~~L~~i~lp~ 375 (394)
T 4fs7_A 364 GCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEEEEEG
T ss_pred CCCCCCEEEECC
Confidence 666666666643
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.22 E-value=2.8e-07 Score=89.45 Aligned_cols=129 Identities=15% Similarity=-0.003 Sum_probs=93.0
Q ss_pred cEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEE
Q 003957 579 QVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISL 658 (784)
Q Consensus 579 ~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L 658 (784)
+.++++++.-...+.. ..++|++|++++ +.++.......+..+++|++|++++|.+.... .....++++|+.|
T Consensus 11 ~~l~~s~~~l~~ip~~---~~~~l~~L~l~~--n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD---IPLHTTELLLND--NELGRISSDGLFGRLPHLVKLELKRNQLTGIE--PNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCSSCCSC---CCTTCSEEECCS--CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC--TTTTTTCTTCCEE
T ss_pred CEEEcCCCCcCcCccC---CCCCCCEEECCC--CcCCccCCccccccCCCCCEEECCCCCCCCcC--HhHcCCcccCCEE
Confidence 5667766621111111 224899999999 56764332223567899999999999876521 2233568999999
Q ss_pred eecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 659 HLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 659 ~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+|++|. ++......+.++++|+.|++++|.+ . ...+..+..+++|+.|++++|+..
T Consensus 84 ~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l--~-~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 84 QLGENK-IKEISNKMFLGLHQLKTLNLYDNQI--S-CVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECCSCC-CCEECSSSSTTCTTCCEEECCSSCC--C-EECTTSSTTCTTCCEEECTTCCBC
T ss_pred ECCCCc-CCccCHHHhcCCCCCCEEECCCCcC--C-eeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999987 6655555567899999999999976 4 445667888999999999998876
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-07 Score=111.51 Aligned_cols=152 Identities=15% Similarity=-0.031 Sum_probs=92.1
Q ss_pred HHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHH
Q 003957 569 INILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLII 648 (784)
Q Consensus 569 ~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~ 648 (784)
...+..+++|+.|+|++|........+. .+++|++|+|++ +.++ .+...+.++++|+.|+|++|.+.. . ...
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~--N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~--l-p~~ 288 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNG--NSLT--ELPAEIKNLSNLRVLDLSHNRLTS--L-PAE 288 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTT--SCCS--CCCGGGGGGTTCCEEECTTSCCSS--C-CSS
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeC--CcCc--ccChhhhCCCCCCEEeCcCCcCCc--c-Chh
Confidence 4456778899999999983222222233 568999999999 4676 233334678899999999998763 1 112
Q ss_pred HhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCC-CceeccccccccCCCCCcccc
Q 003957 649 SQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPM-LRLVSLDLCDASDGNFEIPDY 727 (784)
Q Consensus 649 ~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~-L~~L~L~~c~~~~~~~~l~~~ 727 (784)
..++++|+.|+|++|. ++.. +..+.++++|+.|+|++|.+ . ..++..+..+.. +..|.+++|... + .+|
T Consensus 289 ~~~l~~L~~L~L~~N~-l~~l-p~~~~~l~~L~~L~L~~N~l--~-~~~p~~~~~~~~~~~~l~l~~N~l~-~--~~p-- 358 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNM-VTTL-PWEFGNLCNLQFLGVEGNPL--E-KQFLKILTEKSVTGLIFYLRDNRPE-I--PLP-- 358 (727)
T ss_dssp GGGGTTCSEEECCSSC-CCCC-CSSTTSCTTCCCEECTTSCC--C-SHHHHHHHHHHHHHHHHHHHHCCCC-C--CCC--
T ss_pred hcCCCCCCEEECCCCC-CCcc-ChhhhcCCCccEEeCCCCcc--C-CCChHHHhhcchhhhHHhhccCccc-C--cCc--
Confidence 3568999999999986 5532 33467899999999999976 5 566666544321 223566665544 2 122
Q ss_pred cCCCCCCEEEecCC
Q 003957 728 ADRYSLSTVKITKC 741 (784)
Q Consensus 728 ~~~~~L~~L~is~C 741 (784)
..|+.|+++.+
T Consensus 359 ---~~l~~l~l~~n 369 (727)
T 4b8c_D 359 ---HERRFIEINTD 369 (727)
T ss_dssp ---CC---------
T ss_pred ---cccceeEeecc
Confidence 45666777666
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.6e-07 Score=87.42 Aligned_cols=109 Identities=14% Similarity=0.027 Sum_probs=62.8
Q ss_pred CCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCC
Q 003957 600 PNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIA 679 (784)
Q Consensus 600 ~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~ 679 (784)
++|++|++++ +.++... ..+.++++|+.|++++|.+..- ......++++|+.|+|++|. ++......+.++++
T Consensus 31 ~~l~~L~L~~--n~i~~ip--~~~~~l~~L~~L~Ls~N~i~~i--~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~ 103 (193)
T 2wfh_A 31 RDVTELYLDG--NQFTLVP--KELSNYKHLTLIDLSNNRISTL--SNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKS 103 (193)
T ss_dssp TTCCEEECCS--SCCCSCC--GGGGGCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTT
T ss_pred CCCCEEECCC--CcCchhH--HHhhcccCCCEEECCCCcCCEe--CHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCC
Confidence 3455555555 3343211 2334566677777776665431 11122356777777777765 55444445567777
Q ss_pred CCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 680 LEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 680 L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
|+.|+|++|.+ . ......+..+++|+.|++++|+..
T Consensus 104 L~~L~L~~N~l--~-~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 104 LRLLSLHGNDI--S-VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSSCC--C-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCC--C-eeChhhhhcCccccEEEeCCCCee
Confidence 77777777765 3 223334667777788877777654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=4.7e-05 Score=72.95 Aligned_cols=121 Identities=16% Similarity=0.197 Sum_probs=66.4
Q ss_pred HHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhC---CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhc
Q 003957 308 DLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRC---VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTL 384 (784)
Q Consensus 308 ~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~---~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 384 (784)
.+..+...-+.|++|+|+++..+++.+...+...+ ..|+.|+|++|.|++.+..+++
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA-------------------- 91 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI-------------------- 91 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH--------------------
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH--------------------
Confidence 34444444555666666554455555555444332 4455555555555555444332
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-----cCCcCEEEecCC---ccchhh---HH
Q 003957 385 ASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-----GSSLEMLDVSDT---MISGAA---LA 453 (784)
Q Consensus 385 l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-----~~~L~~L~Ls~~---~i~~~~---l~ 453 (784)
......+.|+.|+|++|.+++.+...+. ...|++|+|+++ .+.+.+ +.
T Consensus 92 ---------------------~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 92 ---------------------ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp ---------------------HHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred ---------------------HHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 1223445566666666666666555443 356777777654 445543 44
Q ss_pred HHHhcCCCccEEeccC
Q 003957 454 YMVHGNSGLKYLNARG 469 (784)
Q Consensus 454 ~~~~~l~~L~~L~L~~ 469 (784)
..+...+.|+.|+++.
T Consensus 151 ~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 151 MAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHCSSCCEEECCC
T ss_pred HHHHhCCCcCeEeccC
Confidence 4556667788887754
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.3e-06 Score=93.15 Aligned_cols=143 Identities=15% Similarity=0.147 Sum_probs=78.0
Q ss_pred HhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCC-CCChHHHHHHHh
Q 003957 572 LESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCT-LLSSDSQLIISQ 650 (784)
Q Consensus 572 ~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~-~~~~~~~~~~~~ 650 (784)
+.++..|+.+.+..+....... ....++.++.+.... ..+.+. .+..|.+|+.+.+.++- .+. .....
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~-~F~~~~~l~~~~~~~--~~i~~~----~F~~~~~L~~i~l~~~i~~I~----~~aF~ 317 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGS-LFYNCSGLKKVIYGS--VIVPEK----TFYGCSSLTEVKLLDSVKFIG----EEAFE 317 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSC-TTTTCTTCCEEEECS--SEECTT----TTTTCTTCCEEEECTTCCEEC----TTTTT
T ss_pred ccccccceeEEcCCCcceeecc-ccccccccceeccCc--eeeccc----cccccccccccccccccceec----hhhhc
Confidence 4456666666665542211111 123345666665554 222221 23457778887776531 111 11234
Q ss_pred cCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccC
Q 003957 651 GWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YAD 729 (784)
Q Consensus 651 ~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~ 729 (784)
+|.+|+.+.|.. .++..+...|.+|++|+.+++..+ + . .....++.+|++|+.+.+..+-.. +.. |.+
T Consensus 318 ~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~-l--~-~I~~~aF~~C~~L~~i~lp~~~~~-----~~~~F~~ 386 (394)
T 4fs7_A 318 SCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS-L--R-KIGANAFQGCINLKKVELPKRLEQ-----YRYDFED 386 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT-C--C-EECTTTBTTCTTCCEEEEEGGGGG-----GGGGBCT
T ss_pred CCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc-c--c-EehHHHhhCCCCCCEEEECCCCEE-----hhheecC
Confidence 677788887754 255555556667888888887665 2 2 333455777888888877643211 122 677
Q ss_pred CCCCCEE
Q 003957 730 RYSLSTV 736 (784)
Q Consensus 730 ~~~L~~L 736 (784)
|++|+.+
T Consensus 387 c~~L~~I 393 (394)
T 4fs7_A 387 TTKFKWI 393 (394)
T ss_dssp TCEEEEE
T ss_pred CCCCcEE
Confidence 7777664
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.05 E-value=2.6e-06 Score=80.82 Aligned_cols=104 Identities=18% Similarity=0.067 Sum_probs=71.2
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPML 707 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L 707 (784)
..+.++++++....- .. .-.++|+.|+|++|. ++......+.++++|+.|+|++|.+ . ...+..+..+++|
T Consensus 10 ~~~~l~~s~n~l~~i--p~---~~~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l--~-~l~~~~f~~l~~L 80 (170)
T 3g39_A 10 SGTTVDCSGKSLASV--PT---GIPTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQL--T-VLPAGVFDKLTQL 80 (170)
T ss_dssp ETTEEECTTSCCSSC--CS---CCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCC--C-CCCTTTTTTCTTC
T ss_pred CCCEEEeCCCCcCcc--Cc---cCCCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCc--C-ccChhhccCCCCC
Confidence 356777777665431 11 113678888888876 5544445566788888888888865 3 3334456788888
Q ss_pred ceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCc
Q 003957 708 RLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 708 ~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~ 744 (784)
+.|+|++|... .+|. +..+++|++|++++|+..
T Consensus 81 ~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 81 TQLSLNDNQLK----SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECCCCccC----EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88888887665 3444 778888999999888754
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=6.5e-05 Score=71.97 Aligned_cols=118 Identities=7% Similarity=0.075 Sum_probs=87.8
Q ss_pred CCCccEEecCCCCCCChHHHHHHHH---cCCCCCeEecCCCCccCHHHHHHHHH---hCCCCCEEEeeCCCCCHHHHHHh
Q 003957 290 PSKITKLTLEGRSDMCDADLEFISK---YCVSLGYINIKGCVSVTDVCISNLIR---RCVKLQSIIVCDTSFGVYSIRAL 363 (784)
Q Consensus 290 l~~L~~L~Ls~~~~l~~~~l~~l~~---~~~~L~~L~L~~c~~l~~~~l~~l~~---~~~~L~~L~Ls~~~i~~~~l~~l 363 (784)
-+.|++|+|+++..+++.+...++. .-..|++|+|++| .+++.+..++.. .-+.|++|+|++|.|++.|..++
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3789999999877899988777665 3457999999995 678877655554 45899999999999999999998
Q ss_pred hccCCccCcccccccchhhhcCCCccEEEecCCC--CCCHHHH---HHHHHhCccccEEEecCCc
Q 003957 364 CSEVPYCNSSALCGKRNFNTLASNLQMLHMACCN--GVDGMYL---LELMCQARKLKSLCLSGTQ 423 (784)
Q Consensus 364 ~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~--~l~~~~l---~~l~~~~~~L~~L~Ls~~~ 423 (784)
+..+ ..-+.|++|+|+++. .+.+..- .......+.|+.|+++.+.
T Consensus 119 a~aL---------------~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRST---------------LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHT---------------TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHH---------------hhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 7666 445579999998652 4565543 3333566677777766553
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=97.92 E-value=2.6e-06 Score=92.73 Aligned_cols=215 Identities=11% Similarity=0.064 Sum_probs=137.6
Q ss_pred CccEEEeccccCcccHhhhhhhcCcccEEEecCC-CCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcE
Q 003957 502 KLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLG-GSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQV 580 (784)
Q Consensus 502 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~-~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~ 580 (784)
+|+.+.+..+...+...++.. .+|+.+.+... ..+.+..+ ..|++|+.+++..+.++..+-.. +. +.+|+.
T Consensus 136 ~L~~i~l~~~i~~I~~~aF~~--~~L~~i~lp~~l~~I~~~aF----~~c~~L~~l~l~~n~l~~I~~~a-F~-~~~L~~ 207 (401)
T 4fdw_A 136 QIAKVVLNEGLKSIGDMAFFN--STVQEIVFPSTLEQLKEDIF----YYCYNLKKADLSKTKITKLPAST-FV-YAGIEE 207 (401)
T ss_dssp CCSEEECCTTCCEECTTTTTT--CCCCEEECCTTCCEECSSTT----TTCTTCCEEECTTSCCSEECTTT-TT-TCCCSE
T ss_pred CccEEEeCCCccEECHHhcCC--CCceEEEeCCCccEehHHHh----hCcccCCeeecCCCcceEechhh-Ee-ecccCE
Confidence 688888866666666655444 36888888752 22332222 34888999999765554432222 22 578999
Q ss_pred EEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEee
Q 003957 581 LAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHL 660 (784)
Q Consensus 581 L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L 660 (784)
+.+..+....... ....|++|+.+.+.. + ++..+-..+ .+ .+|+.+.+.++- .. .......+|++|+.+.+
T Consensus 208 l~lp~~l~~I~~~-aF~~~~~L~~l~l~~--~-l~~I~~~aF-~~-~~L~~i~lp~~i-~~--I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 208 VLLPVTLKEIGSQ-AFLKTSQLKTIEIPE--N-VSTIGQEAF-RE-SGITTVKLPNGV-TN--IASRAFYYCPELAEVTT 278 (401)
T ss_dssp EECCTTCCEECTT-TTTTCTTCCCEECCT--T-CCEECTTTT-TT-CCCSEEEEETTC-CE--ECTTTTTTCTTCCEEEE
T ss_pred EEeCCchheehhh-HhhCCCCCCEEecCC--C-ccCcccccc-cc-CCccEEEeCCCc-cE--EChhHhhCCCCCCEEEe
Confidence 9998764322222 234678999999976 2 332222222 23 489999996632 11 11223467999999999
Q ss_pred cCCCCC----CHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCC
Q 003957 661 EECGDI----TAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLS 734 (784)
Q Consensus 661 ~~c~~i----~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~ 734 (784)
.++... ...+...|.+|++|+.+++..+ + . .....++.+|++|+.+.|..+ ++ .++. |.+| +|+
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i--~-~I~~~aF~~c~~L~~l~lp~~--l~---~I~~~aF~~~-~L~ 348 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I--R-ILGQGLLGGNRKVTQLTIPAN--VT---QINFSAFNNT-GIK 348 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C--C-EECTTTTTTCCSCCEEEECTT--CC---EECTTSSSSS-CCC
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeCCc-e--E-EEhhhhhcCCCCccEEEECcc--cc---EEcHHhCCCC-CCC
Confidence 886521 1234456678999999999854 2 3 444566889999999999653 32 2333 8899 999
Q ss_pred EEEecCCCC
Q 003957 735 TVKITKCKS 743 (784)
Q Consensus 735 ~L~is~C~~ 743 (784)
.+++.++..
T Consensus 349 ~l~l~~n~~ 357 (401)
T 4fdw_A 349 EVKVEGTTP 357 (401)
T ss_dssp EEEECCSSC
T ss_pred EEEEcCCCC
Confidence 999998863
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.84 E-value=8.5e-06 Score=77.49 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=67.7
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCce
Q 003957 630 VELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRL 709 (784)
Q Consensus 630 ~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~ 709 (784)
+.++++++....- .. .-.++|+.|+|++|. ++...+..+.++++|+.|+|++|.+ . ......+..+++|+.
T Consensus 15 ~~l~~~~n~l~~i--P~---~~~~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l--~-~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNIRLASV--PA---GIPTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKL--T-AIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSSCCSSC--CS---CCCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--C-CCCTTTTTTCTTCCE
T ss_pred cEEEeCCCCCCcc--CC---CcCCCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCC--C-ccChhHhCCcchhhE
Confidence 5667776654330 00 113667888887766 5544444566788888888888865 3 323334677888888
Q ss_pred eccccccccCCCCCccc--ccCCCCCCEEEecCCCCc
Q 003957 710 VSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 710 L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~ 744 (784)
|+|++|... .+|. +..+++|++|++++|+..
T Consensus 86 L~L~~N~l~----~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 86 LDLNDNHLK----SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EECCSSCCC----CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred EECCCCccc----eeCHHHhccccCCCEEEeCCCCcc
Confidence 888887665 3444 778888999999888754
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.3e-05 Score=76.25 Aligned_cols=104 Identities=15% Similarity=0.101 Sum_probs=77.8
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPML 707 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L 707 (784)
..+.++++++....-. ..-.++|+.|++++|. ++......+.++++|++|++++|.+ . ......+..+++|
T Consensus 8 ~~~~l~~~~~~l~~~p-----~~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l--~-~~~~~~~~~l~~L 78 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVP-----TGIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQI--Q-SLPDGVFDKLTKL 78 (177)
T ss_dssp ETTEEECCSSCCSSCC-----TTCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCC--C-CCCTTTTTTCTTC
T ss_pred CCCEEEecCCCCccCC-----CCCCCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcc--e-EeChhHccCCCcc
Confidence 3567888877654411 1225789999999987 6544444566899999999999976 4 3334457889999
Q ss_pred ceeccccccccCCCCCccc--ccCCCCCCEEEecCCCCc
Q 003957 708 RLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 708 ~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~~ 744 (784)
+.|++++|... .+|. +..+++|++|++++|...
T Consensus 79 ~~L~l~~N~l~----~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 79 TILYLHENKLQ----SLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp CEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CEEECCCCCcc----ccCHHHhhCCcccCEEECcCCcce
Confidence 99999998766 3454 788999999999999765
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.57 E-value=3.4e-05 Score=82.22 Aligned_cols=63 Identities=19% Similarity=0.140 Sum_probs=27.4
Q ss_pred CCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccc
Q 003957 652 WPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDA 717 (784)
Q Consensus 652 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~ 717 (784)
+++|+.|+|++++.++......|.++++|+.|+|++|.+ . ...+..+.++++|+.|+|++|..
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l--~-~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL--R-FVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC--C-EECTTGGGSCSCCCEEECCSSCC
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcc--c-eeCHHHhcCCcCCCEEeCCCCcc
Confidence 344444444432223333333344455555555555533 2 22233344455555555554443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.56 E-value=1.5e-05 Score=75.44 Aligned_cols=83 Identities=17% Similarity=0.100 Sum_probs=34.3
Q ss_pred CCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCC
Q 003957 600 PNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIA 679 (784)
Q Consensus 600 ~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~ 679 (784)
++|++|++++ +.++.... ..+.++++|++|++++|.+.. .......++++|+.|+|++|. ++......+.++++
T Consensus 30 ~~l~~L~L~~--N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 103 (170)
T 3g39_A 30 TTTQVLYLYD--NQITKLEP-GVFDRLTQLTRLDLDNNQLTV--LPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKS 103 (170)
T ss_dssp TTCSEEECCS--SCCCCCCT-TTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCCcEEEcCC--CcCCccCh-hhhcCcccCCEEECCCCCcCc--cChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCC
Confidence 4555555555 33432111 112234455555555554332 111111234455555555443 33222222334445
Q ss_pred CCEEEcccC
Q 003957 680 LEDLLLRHN 688 (784)
Q Consensus 680 L~~L~L~~n 688 (784)
|+.|+|++|
T Consensus 104 L~~L~L~~N 112 (170)
T 3g39_A 104 LTHIWLLNN 112 (170)
T ss_dssp CCEEECCSS
T ss_pred CCEEEeCCC
Confidence 555555554
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00011 Score=79.80 Aligned_cols=302 Identities=13% Similarity=0.119 Sum_probs=136.3
Q ss_pred CccEEEecCC-CCCCHHHHHHHHHhCccccEEEecCC---cCchhhhhhcc-cCCcCEEEecCC--ccchhhHHHHHhcC
Q 003957 387 NLQMLHMACC-NGVDGMYLLELMCQARKLKSLCLSGT---QLADKALYNFS-GSSLEMLDVSDT--MISGAALAYMVHGN 459 (784)
Q Consensus 387 ~L~~L~L~~c-~~l~~~~l~~l~~~~~~L~~L~Ls~~---~l~~~~~~~l~-~~~L~~L~Ls~~--~i~~~~l~~~~~~l 459 (784)
.|+.+.+... ..+.+.+ +.+|++|+.+.+..+ .++..+..+|. +.+|+.+.+..+ .+... .+.+|
T Consensus 65 ~L~sI~iP~svt~Ig~~A----F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~----aF~~c 136 (394)
T 4gt6_A 65 VLTSVQIPDTVTEIGSNA----FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSE----AFHHC 136 (394)
T ss_dssp CCCEEEECTTCCEECTTT----TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTT----TTTTC
T ss_pred cCEEEEECCCeeEEhHHH----hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhh----hhhhh
Confidence 4777777542 2222222 267788888877654 35556666665 566776666543 22222 12567
Q ss_pred CCccEEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCC-CC
Q 003957 460 SGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGG-SL 538 (784)
Q Consensus 460 ~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~l 538 (784)
.+|+.+.+... +...+-. .+..+..|+.+.+......+...++. ..+|+.+.+...- .+
T Consensus 137 ~~L~~i~lp~~--~~~I~~~----------------~F~~c~~L~~i~~~~~~~~I~~~aF~--~~~l~~i~ip~~~~~i 196 (394)
T 4gt6_A 137 EELDTVTIPEG--VTSVADG----------------MFSYCYSLHTVTLPDSVTAIEERAFT--GTALTQIHIPAKVTRI 196 (394)
T ss_dssp TTCCEEECCTT--CCEECTT----------------TTTTCTTCCEEECCTTCCEECTTTTT--TCCCSEEEECTTCCEE
T ss_pred cccccccccce--eeeeccc----------------ceecccccccccccceeeEecccccc--ccceeEEEECCccccc
Confidence 77777777432 1111110 23345556666664444433333321 2346666554321 11
Q ss_pred ChHHHHHhhccCCCCcEEEeeeeccChH--HH-H---------HHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEE
Q 003957 539 GEDALRLLPTTCPMLELVVLYFQVMSDS--II-I---------NILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLK 606 (784)
Q Consensus 539 ~~~~l~~l~~~~~~L~~L~L~~~~i~~~--~l-~---------~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~ 606 (784)
.... . ..|..++............ .+ . ........+..+.+......... .....|.+|+.+.
T Consensus 197 ~~~a---f-~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~-~aF~~c~~L~~i~ 271 (394)
T 4gt6_A 197 GTNA---F-SECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIET-HAFDSCAYLASVK 271 (394)
T ss_dssp CTTT---T-TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECT-TTTTTCSSCCEEE
T ss_pred ccch---h-hhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEccc-ceeeecccccEEe
Confidence 1111 1 2244555444321110000 00 0 00001112223333222100000 1123456666666
Q ss_pred ccCCCCCCChHHHHHHHhcCCCCcEEEecCCC-CCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEc
Q 003957 607 LERVTPWMTNNDLVILTQNCSELVELSLVGCT-LLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLL 685 (784)
Q Consensus 607 L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~-~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L 685 (784)
+... +...+- ..+.+|++|+.+.+...- .+. .....+|.+|+.+.|... ++..+-..|.+|.+|+.+.|
T Consensus 272 lp~~---~~~I~~-~aF~~c~~L~~i~l~~~i~~I~----~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 272 MPDS---VVSIGT-GAFMNCPALQDIEFSSRITELP----ESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp CCTT---CCEECT-TTTTTCTTCCEEECCTTCCEEC----TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEE
T ss_pred cccc---cceecC-cccccccccccccCCCcccccC----ceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEE
Confidence 6541 111111 123456677777775421 111 123345777777777542 44444455667777777777
Q ss_pred ccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCEEEecC
Q 003957 686 RHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITK 740 (784)
Q Consensus 686 ~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~ 740 (784)
..+ +. .....++.+|++|+.+.+.++... ...+..+.+|+.+.+..
T Consensus 342 p~s---v~-~I~~~aF~~C~~L~~i~~~~~~~~-----~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 342 PSS---VT-KIPESAFSNCTALNNIEYSGSRSQ-----WNAISTDSGLQNLPVAP 387 (394)
T ss_dssp CTT---CC-BCCGGGGTTCTTCCEEEESSCHHH-----HHTCBCCCCC-------
T ss_pred Ccc---cC-EEhHhHhhCCCCCCEEEECCceee-----hhhhhccCCCCEEEeCC
Confidence 654 12 333445777777777777664322 12255566777766643
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.53 E-value=1.7e-05 Score=75.31 Aligned_cols=64 Identities=17% Similarity=0.022 Sum_probs=30.8
Q ss_pred cCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 651 GWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 651 ~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
++++|+.|+|++|. ++......+.++++|+.|+|++|.+ . ......+..+++|+.|++++|+..
T Consensus 55 ~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l--~-~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 55 HLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHL--K-SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--C-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCcc--c-eeCHHHhccccCCCEEEeCCCCcc
Confidence 34555555555543 3322222234555666666666544 2 222223555566666666655544
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0001 Score=80.10 Aligned_cols=286 Identities=14% Similarity=0.185 Sum_probs=167.9
Q ss_pred HhC-ccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCc---cchhhHHHHHhcCCCccEEeccCCCcccccccccccc
Q 003957 409 CQA-RKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTM---ISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGI 483 (784)
Q Consensus 409 ~~~-~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~---i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~ 483 (784)
.++ ..|+++.+..+ ++..+..+|. +.+|+.+.+..+. ++..+-.++ .+|.+|+.+.+.. .++..+-.
T Consensus 60 ~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF-~~c~~L~~i~~~~--~~~~I~~~---- 131 (394)
T 4gt6_A 60 CNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAF-MFCSELTDIPILD--SVTEIDSE---- 131 (394)
T ss_dssp TTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTT-TTCTTCCBCGGGT--TCSEECTT----
T ss_pred cCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhc-hhcccceeeccCC--ccceehhh----
Confidence 344 45888888764 6666777776 6889999887652 433332222 5677777666532 22222211
Q ss_pred ccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCC-CCCChHHHHHhhccCCCCcEEEee--e
Q 003957 484 EFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLG-GSLGEDALRLLPTTCPMLELVVLY--F 560 (784)
Q Consensus 484 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~-~~l~~~~l~~l~~~~~~L~~L~L~--~ 560 (784)
.+..+.+|+.+.+......+... .+..+.+|+.+.+... ..+.+..+ .+..|+.+.+. .
T Consensus 132 ------------aF~~c~~L~~i~lp~~~~~I~~~-~F~~c~~L~~i~~~~~~~~I~~~aF-----~~~~l~~i~ip~~~ 193 (394)
T 4gt6_A 132 ------------AFHHCEELDTVTIPEGVTSVADG-MFSYCYSLHTVTLPDSVTAIEERAF-----TGTALTQIHIPAKV 193 (394)
T ss_dssp ------------TTTTCTTCCEEECCTTCCEECTT-TTTTCTTCCEEECCTTCCEECTTTT-----TTCCCSEEEECTTC
T ss_pred ------------hhhhhcccccccccceeeeeccc-ceecccccccccccceeeEeccccc-----cccceeEEEECCcc
Confidence 44567788888886554444333 3556778888887654 22333222 23568888873 2
Q ss_pred eccChHHHHHHHhhCCCCcEEEecccCC---hhHHH--------Hh--hcCCCCccEEEccCCCCCCChHHHHHHHhcCC
Q 003957 561 QVMSDSIIINILESLRRLQVLAICHCLG---DLSIS--------SF--KLPLPNLRKLKLERVTPWMTNNDLVILTQNCS 627 (784)
Q Consensus 561 ~~i~~~~l~~~~~~l~~L~~L~Ls~c~~---~~~~~--------~l--~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~ 627 (784)
..+... .+.+|.+++......... +.... .+ ......+..+.+.. .++..+ ...+.+|.
T Consensus 194 ~~i~~~----af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~---~v~~i~-~~aF~~c~ 265 (394)
T 4gt6_A 194 TRIGTN----AFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN---GVARIE-THAFDSCA 265 (394)
T ss_dssp CEECTT----TTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT---TEEEEC-TTTTTTCS
T ss_pred cccccc----hhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC---cceEcc-cceeeecc
Confidence 333322 355677777776543310 00000 00 00112333333322 111111 12345788
Q ss_pred CCcEEEecCCCC-CChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCC
Q 003957 628 ELVELSLVGCTL-LSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPM 706 (784)
Q Consensus 628 ~L~~L~Ls~c~~-~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~ 706 (784)
.|+.+.+.+... +. .....+|+.|+.+.+.. .++..+-..|.+|++|+.++|..+ +. .....++.+|.+
T Consensus 266 ~L~~i~lp~~~~~I~----~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~---v~-~I~~~aF~~C~~ 335 (394)
T 4gt6_A 266 YLASVKMPDSVVSIG----TGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG---IT-QILDDAFAGCEQ 335 (394)
T ss_dssp SCCEEECCTTCCEEC----TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT---CC-EECTTTTTTCTT
T ss_pred cccEEecccccceec----CcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc---cc-EehHhHhhCCCC
Confidence 999999976432 11 12335689999999964 365555566779999999999874 23 444567889999
Q ss_pred CceeccccccccCCCCCccc--ccCCCCCCEEEecCCCC
Q 003957 707 LRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCKS 743 (784)
Q Consensus 707 L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~~ 743 (784)
|+.+.|... ++ .+.. |.+|++|+.+++.+...
T Consensus 336 L~~i~ip~s--v~---~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 336 LERIAIPSS--VT---KIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CCEEEECTT--CC---BCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCEEEECcc--cC---EEhHhHhhCCCCCCEEEECCcee
Confidence 999999643 32 2333 99999999999988653
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.001 Score=67.29 Aligned_cols=87 Identities=24% Similarity=0.265 Sum_probs=55.4
Q ss_pred HHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHH-HHHHhhCCCCCCEEEcccCCCCCCh------
Q 003957 622 LTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAY-GVTSLFNCIALEDLLLRHNGPGIPR------ 694 (784)
Q Consensus 622 l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~-~~~~l~~~~~L~~L~L~~n~~gl~~------ 694 (784)
...++++|+.|+|++|.+..-..+......+++|+.|+|++|. ++.. .+..+..+ +|++|+|++|.+ ..
T Consensus 165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l-~L~~L~L~~Npl--~~~~~~~~ 240 (267)
T 3rw6_A 165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGL-KLEELWLDGNSL--CDTFRDQS 240 (267)
T ss_dssp HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTS-CCSEEECTTSTT--GGGCSSHH
T ss_pred HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccC-CcceEEccCCcC--ccccCcch
Confidence 3356788888888888776522222333468888888888876 4432 33333344 888888888865 31
Q ss_pred hHHHHHHhcCCCCceecc
Q 003957 695 DFILDAASKMPMLRLVSL 712 (784)
Q Consensus 695 ~~~~~~l~~l~~L~~L~L 712 (784)
......+..+|+|+.|+=
T Consensus 241 ~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHCTTCCEESS
T ss_pred hHHHHHHHHCcccCeECC
Confidence 112345777888888763
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00099 Score=67.37 Aligned_cols=85 Identities=20% Similarity=0.168 Sum_probs=65.0
Q ss_pred hcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchh-hhhhcccCCcCEEEecCCccch------hhHHHH
Q 003957 383 TLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADK-ALYNFSGSSLEMLDVSDTMISG------AALAYM 455 (784)
Q Consensus 383 ~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~-~~~~l~~~~L~~L~Ls~~~i~~------~~l~~~ 455 (784)
..+++|+.|+|++|..-.-..++.+...+++|+.|+|++|.+++. .+..+...+|++|+|++|.+.. .-...+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 568999999999997644334444557899999999999998876 3444443499999999998764 223456
Q ss_pred HhcCCCccEEec
Q 003957 456 VHGNSGLKYLNA 467 (784)
Q Consensus 456 ~~~l~~L~~L~L 467 (784)
+..+|+|+.|+-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 688999999974
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00039 Score=73.89 Aligned_cols=90 Identities=21% Similarity=0.152 Sum_probs=65.4
Q ss_pred cchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHH
Q 003957 378 KRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMV 456 (784)
Q Consensus 378 ~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~ 456 (784)
+|. +..+++|+.|+|++++.++.... ..+..+++|+.|+|++|.++......|. .++|++|+|++|.++..... .+
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~ 100 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK-TV 100 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST-TT
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH-Hc
Confidence 666 67888999999997333332111 1236899999999999999887777776 68999999999988754322 22
Q ss_pred hcCCCccEEeccCCC
Q 003957 457 HGNSGLKYLNARGCK 471 (784)
Q Consensus 457 ~~l~~L~~L~L~~c~ 471 (784)
..++ |+.|++.++.
T Consensus 101 ~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 101 QGLS-LQELVLSGNP 114 (347)
T ss_dssp CSCC-CCEEECCSSC
T ss_pred ccCC-ceEEEeeCCC
Confidence 3334 9999998763
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0088 Score=64.13 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=25.5
Q ss_pred cCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecc
Q 003957 651 GWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSL 712 (784)
Q Consensus 651 ~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L 712 (784)
+|++|+.+.+.++. ++..+...|.+|++|+.++|..+ +. .....++.+|++|+.+.+
T Consensus 284 ~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~---l~-~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 284 GCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA---LK-TIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT---CC-EECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccc-cceehhhhhcCCCCCCEEEcCcc---cc-EEHHHHhhCCCCCCEEEE
Confidence 45555555554432 33333334445555555555432 11 222233445555555554
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0059 Score=65.48 Aligned_cols=126 Identities=15% Similarity=0.113 Sum_probs=82.5
Q ss_pred CCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCC-CCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhC
Q 003957 598 PLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCT-LLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFN 676 (784)
Q Consensus 598 ~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~-~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~ 676 (784)
.+.+|+.+.+..- ++..+- ..+.+|..|+.+.+..+- .+. .....+|.+|+.+.+.. .++..+...+.+
T Consensus 215 ~~~~l~~i~~~~~---~~~i~~-~~f~~~~~L~~i~lp~~v~~I~----~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~ 284 (379)
T 4h09_A 215 YGKNLKKITITSG---VTTLGD-GAFYGMKALDEIAIPKNVTSIG----SFLLQNCTALKTLNFYA--KVKTVPYLLCSG 284 (379)
T ss_dssp TCSSCSEEECCTT---CCEECT-TTTTTCSSCCEEEECTTCCEEC----TTTTTTCTTCCEEEECC--CCSEECTTTTTT
T ss_pred cccccceeeeccc---eeEEcc-ccccCCccceEEEcCCCccEeC----ccccceeehhccccccc--cceecccccccc
Confidence 3467777777541 222111 123467889998887641 111 12335688899998865 255555556678
Q ss_pred CCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc--ccCCCCCCEEEecCC
Q 003957 677 CIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKC 741 (784)
Q Consensus 677 ~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C 741 (784)
|++|+.+.+..+.+ . .....++.+|.+|+.+.|... ++ .+.. |.+|++|+++.|...
T Consensus 285 c~~L~~i~l~~~~i--~-~I~~~aF~~c~~L~~i~lp~~--l~---~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 285 CSNLTKVVMDNSAI--E-TLEPRVFMDCVKLSSVTLPTA--LK---TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTCCEEEECCTTC--C-EECTTTTTTCTTCCEEECCTT--CC---EECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccc--c-eehhhhhcCCCCCCEEEcCcc--cc---EEHHHHhhCCCCCCEEEECCc
Confidence 99999999988754 3 334556889999999999642 32 2333 899999999998543
|
| >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A | Back alignment and structure |
|---|
Probab=94.09 E-value=0.016 Score=59.21 Aligned_cols=70 Identities=23% Similarity=0.410 Sum_probs=59.3
Q ss_pred ccccccccccchhhhhccccCCcccccccchhhHHHHHHHHhhHhhhccCCCcchhHhHHHhheeeeeeheeccc
Q 003957 3 AMSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLTILKEIRISILPLWFAAG 77 (784)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (784)
+..+..|.++|.+.+...++++.|.|.+|..+-+|++.|++.+.+.-+ ..--.+++.||+.++|.++...
T Consensus 174 v~~~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~~~~~r~-----~~~~~ll~~VRf~l~~~~~L~~ 243 (279)
T 3i3n_A 174 VIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERE-----RYFEELFKLLRLSQMKPTYLTR 243 (279)
T ss_dssp HTTSSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHHHHHHTTHHHHT-----TTHHHHHTTSCGGGSCHHHHHH
T ss_pred HhcCcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCHHHHH-----HHHHHHHHhcCCCCCCHHHHHH
Confidence 346778999999999999999999999999999999999998765321 2245689999999999988764
|
| >3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B | Back alignment and structure |
|---|
Probab=93.35 E-value=0.0074 Score=60.86 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=49.4
Q ss_pred cccccccccchhhhhccccCCcccccccchhhHHHHHHHHhhHhhhccCCCcchhHhHHHhheeeeeeheeccc
Q 003957 4 MSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLTILKEIRISILPLWFAAG 77 (784)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (784)
..+..|.++|.+.+...+++++|.|.+|..+-+|++.|++.+.+. ..+.--.+++.||+.++|-++...
T Consensus 167 ~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~~~~-----R~~~~~~ll~~VRf~~l~~~~l~~ 235 (256)
T 3hve_A 167 SSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEI-----RKVHMKDVMSALWVSGLDSSYLRE 235 (256)
T ss_dssp TTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC--CC-----STTTHHHHHHHHHHHTTCC-CHHH
T ss_pred hCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcCHHH-----HHHHHHHHHHhCCCCCCCHHHHHH
Confidence 456789999999999999999999999999999999999887532 223345799999999999988775
|
| >2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.34 E-value=0.39 Score=40.57 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=44.4
Q ss_pred cccccccccchhhhhccccCCcccccccchhhHHHHHHHHhhHhhhccCCCcchhHhHHHhhee
Q 003957 4 MSHKSFVNIPYSLLLECVKHPSLTVDSEMHLSDALLIWIDANIAQLESSNRVEDDLTILKEIRI 67 (784)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (784)
..+..|-++|++.|...+.+. |.+|..+-+|++.|+..+++.-. ..-..+|+.||+
T Consensus 44 ~~~~eFl~L~~~~L~~lL~sd---v~~E~~vf~av~~Wv~~d~~~R~-----~~~~~Ll~~VR~ 99 (105)
T 2eqx_A 44 QNTEEFLHLPHRLLTDIISDG---VPCSQNPTEAIEAWINFNKEERE-----AFAESLRTSLKE 99 (105)
T ss_dssp HTSHHHHHSCHHHHHHHHHTC---EETTSCHHHHHHHHHHTTHHHHH-----HHHHHHHHHCCE
T ss_pred HhcccHhhCCHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCHHHHH-----HHHHHHHHHHHH
Confidence 456779999999999999996 99999999999999988865321 234567777764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 784 | ||||
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.004 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 0.004
Identities = 29/207 (14%), Positives = 62/207 (29%), Gaps = 17/207 (8%)
Query: 413 KLKSLCLSGTQLADKALYNFSG--SSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGC 470
+++ + LS + + L+ S L+ L + +S + + NS L LN GC
Sbjct: 47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGC 105
Query: 471 KNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVL---------- 520
+ S +L T K ++ + ++ L
Sbjct: 106 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 165
Query: 521 ----KPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLR 576
+ ++ L+ + L + L +
Sbjct: 166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225
Query: 577 RLQVLAICHCLGDLSISSFKLPLPNLR 603
L+ L + + D ++ K LP+L+
Sbjct: 226 TLKTLQVFGIVPDGTLQLLKEALPHLQ 252
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 784 | |||
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.86 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.84 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.82 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.8 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.57 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.54 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.48 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.34 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.21 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.17 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.14 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.11 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.07 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.03 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.02 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.0 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.97 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 98.97 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.92 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.91 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.9 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.85 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.82 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.67 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.62 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.57 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.5 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.41 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.39 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.39 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.32 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.31 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.27 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.24 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.22 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.2 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.15 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.0 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.49 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.04 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.73 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.7e-20 Score=193.49 Aligned_cols=247 Identities=20% Similarity=0.227 Sum_probs=182.1
Q ss_pred cEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEecc
Q 003957 389 QMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNAR 468 (784)
Q Consensus 389 ~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~ 468 (784)
+.+|+++... ....+..+... ....+.++...+.......+...+|++||+++|.++...+..++.+|++|++|++.
T Consensus 3 ~~lDLs~~~l-~~~~l~~l~~~--~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~ 79 (284)
T d2astb2 3 QTLDLTGKNL-HPDVTGRLLSQ--GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79 (284)
T ss_dssp SEEECTTCBC-CHHHHHHHHHT--TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred CEEECCCCCC-CchHHHHHHhc--cceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence 5788887654 44455544332 35566666655444334444467899999999999988888888999999999998
Q ss_pred CCCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhc
Q 003957 469 GCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPT 548 (784)
Q Consensus 469 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~ 548 (784)
+| .+++ ..+..+++
T Consensus 80 ~~-~l~~-----------------------------------------------------------------~~~~~l~~ 93 (284)
T d2astb2 80 GL-RLSD-----------------------------------------------------------------PIVNTLAK 93 (284)
T ss_dssp TC-BCCH-----------------------------------------------------------------HHHHHHTT
T ss_pred cc-CCCc-----------------------------------------------------------------HHHHHHhc
Confidence 88 3333 23334443
Q ss_pred cCCCCcEEEee-eeccChHHHHHHHhhCCCCcEEEeccc--CChhHHHH-hhcCCCCccEEEccCCCCCCChHHHHHHHh
Q 003957 549 TCPMLELVVLY-FQVMSDSIIINILESLRRLQVLAICHC--LGDLSISS-FKLPLPNLRKLKLERVTPWMTNNDLVILTQ 624 (784)
Q Consensus 549 ~~~~L~~L~L~-~~~i~~~~l~~~~~~l~~L~~L~Ls~c--~~~~~~~~-l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~ 624 (784)
+++|++|+++ |+.+++.++..++.++++|++|++++| .++..+.. +...+++|+.|++++|...+++.++..+..
T Consensus 94 -~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~ 172 (284)
T d2astb2 94 -NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 172 (284)
T ss_dssp -CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred -CCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccc
Confidence 5666666663 466777667666777777777777776 34444433 445567888888888744688889998888
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcC
Q 003957 625 NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKM 704 (784)
Q Consensus 625 ~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l 704 (784)
+|++|++|++++|..+++.....+. .+++|++|+|++|..+++.++..+.++++|+.|++++| +++..+......+
T Consensus 173 ~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~---~~d~~l~~l~~~l 248 (284)
T d2astb2 173 RCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI---VPDGTLQLLKEAL 248 (284)
T ss_dssp HCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS---SCTTCHHHHHHHS
T ss_pred ccccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC---CCHHHHHHHHHhC
Confidence 9999999999999888876666554 58999999999999999999888889999999999998 3657777777788
Q ss_pred CCCce
Q 003957 705 PMLRL 709 (784)
Q Consensus 705 ~~L~~ 709 (784)
|+|+.
T Consensus 249 p~L~i 253 (284)
T d2astb2 249 PHLQI 253 (284)
T ss_dssp TTSEE
T ss_pred ccccc
Confidence 88774
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=6.7e-19 Score=194.14 Aligned_cols=392 Identities=18% Similarity=0.155 Sum_probs=253.5
Q ss_pred CCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHH---HHhCCCCCEEEeeCCCCCHHHHHHhhccC
Q 003957 291 SKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNL---IRRCVKLQSIIVCDTSFGVYSIRALCSEV 367 (784)
Q Consensus 291 ~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l---~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l 367 (784)
++|++||++++ .+++.++..+...++++++|+|++|. +++.++..+ +..+++|+.|+|++|.|++.++..++..+
T Consensus 2 ~~l~~ld~~~~-~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l 79 (460)
T d1z7xw1 2 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 79 (460)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CCCCEEEeeCC-cCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence 57899999765 68999989888889999999999984 788776555 46789999999999999998888775433
Q ss_pred CccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHH---HHhCccccEEEecCCcCchhhhhhcc------cCCcC
Q 003957 368 PYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLEL---MCQARKLKSLCLSGTQLADKALYNFS------GSSLE 438 (784)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l---~~~~~~L~~L~Ls~~~l~~~~~~~l~------~~~L~ 438 (784)
. ....+|++|+|++|. +++.+...+ ...+++|+.|++++|.+++.+...+. .....
T Consensus 80 ~--------------~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~ 144 (460)
T d1z7xw1 80 Q--------------TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 144 (460)
T ss_dssp C--------------STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred h--------------cCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccc
Confidence 1 224579999999996 566554443 35789999999999999887765553 23445
Q ss_pred EEEecCCccchhh---HHHHHhcCCCccEEeccCCCccccccccccccccCCCCchhhHHhhhc-CCCccEEEecc-ccC
Q 003957 439 MLDVSDTMISGAA---LAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGR-TRKLEEIVLGW-GFS 513 (784)
Q Consensus 439 ~L~Ls~~~i~~~~---l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~L~~-~~~ 513 (784)
............. ........+.++.+.++++.. .+.++. .....+.. ......+.+.+ ...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~-~~~~~~------------~~~~~l~~~~~~~~~l~~~~~~~~ 211 (460)
T d1z7xw1 145 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI-NEAGVR------------VLCQGLKDSPCQLEALKLESCGVT 211 (460)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC-HHHHHH------------HHHHHHHHSCCCCCEEECTTSCCB
T ss_pred cccccccccchhhhccccccccccccccccccccccc-cccccc------------cccccccccccccccccccccccc
Confidence 5555555443333 233445678899998877643 222211 11222222 23455666632 222
Q ss_pred cccH---hhhhhhcCcccEEEecCCCCCCh---HHHHHhhccCCCCcEEEeeeeccChHHHHH---HHhhCCCCcEEEec
Q 003957 514 FLSL---EVLKPAIKLLHSITVGLGGSLGE---DALRLLPTTCPMLELVVLYFQVMSDSIIIN---ILESLRRLQVLAIC 584 (784)
Q Consensus 514 ~~~~---~~~~~~l~~L~~L~L~~~~~l~~---~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~---~~~~l~~L~~L~Ls 584 (784)
.... .........++.+++..+..... ..........+.++.++++.+.+....... .+...+.++.++++
T Consensus 212 ~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~ 291 (460)
T d1z7xw1 212 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 291 (460)
T ss_dssp TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred chhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 2222 22334456678888877632211 122233344667888888777776654433 34556788888888
Q ss_pred cc-CChhHHHHh----hcCCCCccEEEccCCCCCCChHHHHH---HHhcCCCCcEEEecCCCCCChHHHHHHH----hcC
Q 003957 585 HC-LGDLSISSF----KLPLPNLRKLKLERVTPWMTNNDLVI---LTQNCSELVELSLVGCTLLSSDSQLIIS----QGW 652 (784)
Q Consensus 585 ~c-~~~~~~~~l----~~~~~~L~~L~L~~c~~~l~~~~l~~---l~~~~~~L~~L~Ls~c~~~~~~~~~~~~----~~~ 652 (784)
+| +++.....+ ....+.|+.+.+++| .+++.+... ....+++|++|+|++|.+..+ ....+. ...
T Consensus 292 ~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~--~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~-g~~~l~~~l~~~~ 368 (460)
T d1z7xw1 292 GNELGDEGARLLCETLLEPGCQLESLWVKSC--SFTAACCSHFSSVLAQNRFLLELQISNNRLEDA-GVRELCQGLGQPG 368 (460)
T ss_dssp TCCCHHHHHHHHHHHHTSTTCCCCEEECTTS--CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH-HHHHHHHHHTSTT
T ss_pred cccccccccchhhcccccccccccccccccc--chhhhhhhhcccccccccchhhhheeeecccCc-ccchhhhhhhccc
Confidence 87 444444333 234467888888885 466655443 345667888888888865433 222222 345
Q ss_pred CCCcEEeecCCCCCCHHHHHHh----hCCCCCCEEEcccCCCCCChhHHHHH---Hh-cCCCCceecccccccc
Q 003957 653 PGLISLHLEECGDITAYGVTSL----FNCIALEDLLLRHNGPGIPRDFILDA---AS-KMPMLRLVSLDLCDAS 718 (784)
Q Consensus 653 ~~L~~L~L~~c~~i~~~~~~~l----~~~~~L~~L~L~~n~~gl~~~~~~~~---l~-~l~~L~~L~L~~c~~~ 718 (784)
+.|+.|+|++|+ +++.++..+ ..+++|++|+|++|.+ +++.+... +. ....|+.|++.++...
T Consensus 369 ~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i--~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~ 439 (460)
T d1z7xw1 369 SVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCL--GDAGILQLVESVRQPGCLLEQLVLYDIYWS 439 (460)
T ss_dssp CCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSC--CHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCCCEEECCCCC-CChHHHHHHHHHHhcCCCCCEEECCCCcC--CHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence 678888888885 887776654 3578888888888865 65444433 32 2346888888877655
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.6e-18 Score=191.04 Aligned_cols=396 Identities=16% Similarity=0.174 Sum_probs=270.0
Q ss_pred CCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCC
Q 003957 317 VSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACC 396 (784)
Q Consensus 317 ~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c 396 (784)
++|++|++++ ..+++.++.++++.++++++|+|++|.+++.++.+++. .+..+++|++|+|++|
T Consensus 2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~---------------~L~~~~~L~~LdLs~N 65 (460)
T d1z7xw1 2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS---------------ALRVNPALAELNLRSN 65 (460)
T ss_dssp EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH---------------HHHTCTTCCEEECTTC
T ss_pred CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHH---------------HHhcCCCCCEEECcCC
Confidence 4789999965 88999999999999999999999999999988877643 3377899999999987
Q ss_pred CCCCHHHHHHHHHh----CccccEEEecCCcCchhhhhhcc-----cCCcCEEEecCCccchhhHHHHHhcC----CCcc
Q 003957 397 NGVDGMYLLELMCQ----ARKLKSLCLSGTQLADKALYNFS-----GSSLEMLDVSDTMISGAALAYMVHGN----SGLK 463 (784)
Q Consensus 397 ~~l~~~~l~~l~~~----~~~L~~L~Ls~~~l~~~~~~~l~-----~~~L~~L~Ls~~~i~~~~l~~~~~~l----~~L~ 463 (784)
. +++.++..+... .++|++|++++|.+++.+...+. .++|++|++++|.+++.+...+.... ....
T Consensus 66 ~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~ 144 (460)
T d1z7xw1 66 E-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 144 (460)
T ss_dssp C-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred c-CChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccc
Confidence 5 677777666443 35899999999999987755443 57999999999998887766554332 2233
Q ss_pred EEeccCCCccccccccccccccCCCCchhhHHhhhcCCCccEEEecccc-CcccHhh----hhhhcCcccEEEecCCCCC
Q 003957 464 YLNARGCKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGF-SFLSLEV----LKPAIKLLHSITVGLGGSL 538 (784)
Q Consensus 464 ~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~----~~~~l~~L~~L~L~~~~~l 538 (784)
....... .+...+ ...+...+...+.++.+.+++.. ....... +...-.....+++..+...
T Consensus 145 ~~~~~~~-~~~~~~------------~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 211 (460)
T d1z7xw1 145 KLQLEYC-SLSAAS------------CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 211 (460)
T ss_dssp EEECTTS-CCBGGG------------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred ccccccc-ccchhh------------hccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3333222 111111 23344556667889999985433 2222221 1222235677888877433
Q ss_pred ChHH--HHHhhccCCCCcEEEeeeeccChHHHHHH----HhhCCCCcEEEeccc-CChhHHHH---hhcCCCCccEEEcc
Q 003957 539 GEDA--LRLLPTTCPMLELVVLYFQVMSDSIIINI----LESLRRLQVLAICHC-LGDLSISS---FKLPLPNLRKLKLE 608 (784)
Q Consensus 539 ~~~~--l~~l~~~~~~L~~L~L~~~~i~~~~l~~~----~~~l~~L~~L~Ls~c-~~~~~~~~---l~~~~~~L~~L~L~ 608 (784)
.... ........+.++.+.++.+.+.+.++... ......++.+++++| ........ .....+.++.++++
T Consensus 212 ~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~ 291 (460)
T d1z7xw1 212 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 291 (460)
T ss_dssp TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred chhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 3221 22222346889999998877776654333 334668999999998 33333222 22345899999999
Q ss_pred CCCCCCChHHHHHHHh----cCCCCcEEEecCCCCCChHHH--HHHHhcCCCCcEEeecCCCCCCHHHHHHhh-----CC
Q 003957 609 RVTPWMTNNDLVILTQ----NCSELVELSLVGCTLLSSDSQ--LIISQGWPGLISLHLEECGDITAYGVTSLF-----NC 677 (784)
Q Consensus 609 ~c~~~l~~~~l~~l~~----~~~~L~~L~Ls~c~~~~~~~~--~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~-----~~ 677 (784)
+ +.+++.++..+.. ..+.|+.+++++|........ ......+++|++|+|++|+ +++.++..+. ..
T Consensus 292 ~--n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~ 368 (460)
T d1z7xw1 292 G--NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPG 368 (460)
T ss_dssp T--CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTT
T ss_pred c--ccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeec-ccCcccchhhhhhhccc
Confidence 9 5788877765543 346899999999986654332 2244567899999999986 8887776652 46
Q ss_pred CCCCEEEcccCCCCCChhH---HHHHHhcCCCCceeccccccccC-CCCCccc-c-cCCCCCCEEEecCCCCcCcc
Q 003957 678 IALEDLLLRHNGPGIPRDF---ILDAASKMPMLRLVSLDLCDASD-GNFEIPD-Y-ADRYSLSTVKITKCKSKNRN 747 (784)
Q Consensus 678 ~~L~~L~L~~n~~gl~~~~---~~~~l~~l~~L~~L~L~~c~~~~-~~~~l~~-~-~~~~~L~~L~is~C~~~~~~ 747 (784)
+.|++|+|++|.+ ++.. +.+.+..+++|++|+|++|+... +...+.. + .+...|+.|++.++......
T Consensus 369 ~~L~~L~Ls~n~i--~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~ 442 (460)
T d1z7xw1 369 SVLRVLWLADCDV--SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 442 (460)
T ss_dssp CCCCEEECTTSCC--CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred CCCCEEECCCCCC--ChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence 7899999999975 7543 34457788999999999986542 1111222 2 34568999999998764433
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.5e-18 Score=178.76 Aligned_cols=202 Identities=18% Similarity=0.238 Sum_probs=155.9
Q ss_pred CCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecC
Q 003957 316 CVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMAC 395 (784)
Q Consensus 316 ~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 395 (784)
..+|++|++++| .+++..+..++.+|++|++|+++++.+++..+..+ ..+++|++|++++
T Consensus 45 ~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l-------------------~~~~~L~~L~Ls~ 104 (284)
T d2astb2 45 PFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-------------------AKNSNLVRLNLSG 104 (284)
T ss_dssp CBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-------------------TTCTTCSEEECTT
T ss_pred CCCCCEEECCCC-ccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH-------------------hcCCCCcCccccc
Confidence 457888999886 56777888888889999999999988888776654 5678899999999
Q ss_pred CCCCCHHHHHHHHHhCccccEEEecCC-cCchhhhhhcc---cCCcCEEEecCC--ccchhhHHHHHhcCCCccEEeccC
Q 003957 396 CNGVDGMYLLELMCQARKLKSLCLSGT-QLADKALYNFS---GSSLEMLDVSDT--MISGAALAYMVHGNSGLKYLNARG 469 (784)
Q Consensus 396 c~~l~~~~l~~l~~~~~~L~~L~Ls~~-~l~~~~~~~l~---~~~L~~L~Ls~~--~i~~~~l~~~~~~l~~L~~L~L~~ 469 (784)
|..+++.++..+...+++|++|++++| .+++.++.... +++|+.|+++++ .+++.++..+..++|+|++|++++
T Consensus 105 c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~ 184 (284)
T d2astb2 105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 184 (284)
T ss_dssp CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred cccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccc
Confidence 999998888888788999999999986 57776654432 578999999986 588888888888999999999999
Q ss_pred CCccccccccccccccCCCCchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhcc
Q 003957 470 CKNLFQQESNGRGIEFSSYPCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTT 549 (784)
Q Consensus 470 c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~ 549 (784)
|..+++.++. . +..+++|++|++++|..+++.++..+++
T Consensus 185 ~~~itd~~~~----------------~------------------------l~~~~~L~~L~L~~C~~i~~~~l~~L~~- 223 (284)
T d2astb2 185 SVMLKNDCFQ----------------E------------------------FFQLNYLQHLSLSRCYDIIPETLLELGE- 223 (284)
T ss_dssp CTTCCGGGGG----------------G------------------------GGGCTTCCEEECTTCTTCCGGGGGGGGG-
T ss_pred ccCCCchhhh----------------h------------------------hcccCcCCEEECCCCCCCChHHHHHHhc-
Confidence 9888876544 1 2345567777777777777777766665
Q ss_pred CCCCcEEEeeeeccChHHHHHHHhhCCCCc
Q 003957 550 CPMLELVVLYFQVMSDSIIINILESLRRLQ 579 (784)
Q Consensus 550 ~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~ 579 (784)
+|+|+.|+++.. +++.++..+.+.+++|+
T Consensus 224 ~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~ 252 (284)
T d2astb2 224 IPTLKTLQVFGI-VPDGTLQLLKEALPHLQ 252 (284)
T ss_dssp CTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred CCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence 777777777533 66666777667777665
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=1.1e-15 Score=164.18 Aligned_cols=190 Identities=17% Similarity=0.144 Sum_probs=130.0
Q ss_pred hhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCC
Q 003957 521 KPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPL 599 (784)
Q Consensus 521 ~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~ 599 (784)
...+++++.++++++. ++.. ... ..+++|++|+++.+.+++.+ .+..+++|+.|++++| ..+.. . ...+
T Consensus 193 ~~~l~~~~~l~l~~n~-i~~~--~~~-~~~~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~--~-~~~~ 262 (384)
T d2omza2 193 LAKLTNLESLIATNNQ-ISDI--TPL-GILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNLA--P-LSGL 262 (384)
T ss_dssp GGGCTTCSEEECCSSC-CCCC--GGG-GGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCG--G-GTTC
T ss_pred cccccccceeeccCCc-cCCC--Ccc-cccCCCCEEECCCCCCCCcc---hhhcccccchhccccCccCCCC--c-cccc
Confidence 3445567777776652 2221 112 23677888888777776632 3567888888888887 22221 2 2345
Q ss_pred CCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCC
Q 003957 600 PNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIA 679 (784)
Q Consensus 600 ~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~ 679 (784)
++|++|+++++ .++... ....++.++.+++++|...... ....+++++.|++++|+ +++. ..+..+++
T Consensus 263 ~~L~~L~l~~~--~l~~~~---~~~~~~~l~~l~~~~n~l~~~~----~~~~~~~l~~L~ls~n~-l~~l--~~l~~l~~ 330 (384)
T d2omza2 263 TKLTELKLGAN--QISNIS---PLAGLTALTNLELNENQLEDIS----PISNLKNLTYLTLYFNN-ISDI--SPVSSLTK 330 (384)
T ss_dssp TTCSEEECCSS--CCCCCG---GGTTCTTCSEEECCSSCCSCCG----GGGGCTTCSEEECCSSC-CSCC--GGGGGCTT
T ss_pred ccCCEeeccCc--ccCCCC---cccccccccccccccccccccc----ccchhcccCeEECCCCC-CCCC--cccccCCC
Confidence 88999999884 454321 1346778999999888765421 13568899999999886 5542 23668999
Q ss_pred CCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCEEEecCC
Q 003957 680 LEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITKC 741 (784)
Q Consensus 680 L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C 741 (784)
|++|++++|.+ + .++ .++++++|++|++++|+.. +++++.++++|++|+|+++
T Consensus 331 L~~L~L~~n~l--~--~l~-~l~~l~~L~~L~l~~N~l~----~l~~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 331 LQRLFFANNKV--S--DVS-SLANLTNINWLSAGHNQIS----DLTPLANLTRITQLGLNDQ 383 (384)
T ss_dssp CCEEECCSSCC--C--CCG-GGGGCTTCCEEECCSSCCC----BCGGGTTCTTCSEEECCCE
T ss_pred CCEEECCCCCC--C--CCh-hHcCCCCCCEEECCCCcCC----CChhhccCCCCCEeeCCCC
Confidence 99999999976 3 333 4788999999999988655 4566888999999999875
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.57 E-value=1.6e-13 Score=144.81 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=51.3
Q ss_pred HhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCC--CC---HHHHHH---HHHhC
Q 003957 340 RRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNG--VD---GMYLLE---LMCQA 411 (784)
Q Consensus 340 ~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--l~---~~~l~~---l~~~~ 411 (784)
....+|+.|+|++|.+++.++..++..+ ...++|+.++++++.. .. ...... ....+
T Consensus 28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l---------------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 92 (344)
T d2ca6a1 28 LEDDSVKEIVLSGNTIGTEAARWLSENI---------------ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 92 (344)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTT---------------TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred hhCCCCCEEECcCCcCCHHHHHHHHHHH---------------HhCCCCCEEECCCCcccccccccchHHHHHHHHHhhC
Confidence 3455666666666666666665554322 4455666666665432 11 111111 22456
Q ss_pred ccccEEEecCCcCchhhhhhcc-----cCCcCEEEecCCccchhh
Q 003957 412 RKLKSLCLSGTQLADKALYNFS-----GSSLEMLDVSDTMISGAA 451 (784)
Q Consensus 412 ~~L~~L~Ls~~~l~~~~~~~l~-----~~~L~~L~Ls~~~i~~~~ 451 (784)
++|+.|++++|.+++.+...+. .++|++|++++|.++..+
T Consensus 93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~ 137 (344)
T d2ca6a1 93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 137 (344)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCcccccccccccccccccchhhhhcccccchheecccccccccc
Confidence 6666666666666655444332 356666666666554433
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.54 E-value=9.6e-14 Score=148.70 Aligned_cols=189 Identities=17% Similarity=0.193 Sum_probs=94.4
Q ss_pred HhCccccEEEecCCcCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCCccccccccccccccCCC
Q 003957 409 CQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCKNLFQQESNGRGIEFSSY 488 (784)
Q Consensus 409 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~ 488 (784)
..+++++.+.++++.+++..... ..++|++|++++|.+++.+ .+..+++|+.|++.++. +++..
T Consensus 194 ~~l~~~~~l~l~~n~i~~~~~~~-~~~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~----------- 257 (384)
T d2omza2 194 AKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQ-ISNLA----------- 257 (384)
T ss_dssp GGCTTCSEEECCSSCCCCCGGGG-GCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSC-CCCCG-----------
T ss_pred ccccccceeeccCCccCCCCccc-ccCCCCEEECCCCCCCCcc---hhhcccccchhccccCc-cCCCC-----------
Confidence 45666677777666555433211 1456777777776655432 13456677777766652 22211
Q ss_pred CchhhHHhhhcCCCccEEEeccccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHH
Q 003957 489 PCADLFAELGRTRKLEEIVLGWGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSII 568 (784)
Q Consensus 489 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l 568 (784)
.++.+++|+++++ +++. +.. +..+. .++.++.+.+..+.+++.
T Consensus 258 -------~~~~~~~L~~L~l------------------------~~~~-l~~--~~~~~-~~~~l~~l~~~~n~l~~~-- 300 (384)
T d2omza2 258 -------PLSGLTKLTELKL------------------------GANQ-ISN--ISPLA-GLTALTNLELNENQLEDI-- 300 (384)
T ss_dssp -------GGTTCTTCSEEEC------------------------CSSC-CCC--CGGGT-TCTTCSEEECCSSCCSCC--
T ss_pred -------cccccccCCEeec------------------------cCcc-cCC--CCccc-cccccccccccccccccc--
Confidence 2333444555555 3221 110 00111 244455555544444431
Q ss_pred HHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHH
Q 003957 569 INILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLI 647 (784)
Q Consensus 569 ~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~ 647 (784)
..+..+++++.|++++| +.+.. . ...+++|++|++++| .+++.. . +.++++|++|++++|.+.+-. .
T Consensus 301 -~~~~~~~~l~~L~ls~n~l~~l~--~-l~~l~~L~~L~L~~n--~l~~l~--~-l~~l~~L~~L~l~~N~l~~l~--~- 368 (384)
T d2omza2 301 -SPISNLKNLTYLTLYFNNISDIS--P-VSSLTKLQRLFFANN--KVSDVS--S-LANLTNINWLSAGHNQISDLT--P- 368 (384)
T ss_dssp -GGGGGCTTCSEEECCSSCCSCCG--G-GGGCTTCCEEECCSS--CCCCCG--G-GGGCTTCCEEECCSSCCCBCG--G-
T ss_pred -cccchhcccCeEECCCCCCCCCc--c-cccCCCCCEEECCCC--CCCCCh--h-HcCCCCCCEEECCCCcCCCCh--h-
Confidence 11445556666666665 22211 1 233466777777664 454322 1 345677777777777654311 1
Q ss_pred HHhcCCCCcEEeecCC
Q 003957 648 ISQGWPGLISLHLEEC 663 (784)
Q Consensus 648 ~~~~~~~L~~L~L~~c 663 (784)
..++++|+.|+|++|
T Consensus 369 -l~~l~~L~~L~L~~N 383 (384)
T d2omza2 369 -LANLTRITQLGLNDQ 383 (384)
T ss_dssp -GTTCTTCSEEECCCE
T ss_pred -hccCCCCCEeeCCCC
Confidence 245777777777654
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.48 E-value=1.1e-12 Score=138.22 Aligned_cols=138 Identities=20% Similarity=0.159 Sum_probs=75.2
Q ss_pred cCCCCcEEEeeeeccChHHHHH---HHhhCCCCcEEEeccc-CChhHH----HHhhcCCCCccEEEccCCCCCCChHHHH
Q 003957 549 TCPMLELVVLYFQVMSDSIIIN---ILESLRRLQVLAICHC-LGDLSI----SSFKLPLPNLRKLKLERVTPWMTNNDLV 620 (784)
Q Consensus 549 ~~~~L~~L~L~~~~i~~~~l~~---~~~~l~~L~~L~Ls~c-~~~~~~----~~l~~~~~~L~~L~L~~c~~~l~~~~l~ 620 (784)
..+.|+.+.++.+.+++.+... .+..++.|++|++++| +++... ......+++|++|++++ +.+++.+..
T Consensus 156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~--N~i~~~g~~ 233 (344)
T d2ca6a1 156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD--NTFTHLGSS 233 (344)
T ss_dssp TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS--SCCHHHHHH
T ss_pred cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccc--ccccccccc
Confidence 3566777777666666654433 3445666777777666 333322 12233456677777766 346655543
Q ss_pred HH---HhcCCCCcEEEecCCCCCChHHHHHHHh-----cCCCCcEEeecCCCCCCHHHHHHhh-----CCCCCCEEEccc
Q 003957 621 IL---TQNCSELVELSLVGCTLLSSDSQLIISQ-----GWPGLISLHLEECGDITAYGVTSLF-----NCIALEDLLLRH 687 (784)
Q Consensus 621 ~l---~~~~~~L~~L~Ls~c~~~~~~~~~~~~~-----~~~~L~~L~L~~c~~i~~~~~~~l~-----~~~~L~~L~L~~ 687 (784)
.+ ...+++|++|++++|.+.+.+. ..++. ..+.|+.|+|++|+ +++.++..+. +++.|+.|++++
T Consensus 234 ~L~~~l~~~~~L~~L~Ls~n~i~~~g~-~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~ 311 (344)
T d2ca6a1 234 ALAIALKSWPNLRELGLNDCLLSARGA-AAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNG 311 (344)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCCHHHH-HHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred cccccccccccchhhhhhcCccCchhh-HHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCC
Confidence 33 3456667777776665433222 22211 13456666666654 6665544432 356666666666
Q ss_pred CCC
Q 003957 688 NGP 690 (784)
Q Consensus 688 n~~ 690 (784)
|.+
T Consensus 312 N~~ 314 (344)
T d2ca6a1 312 NRF 314 (344)
T ss_dssp SBS
T ss_pred CcC
Confidence 654
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.34 E-value=1e-12 Score=136.01 Aligned_cols=111 Identities=24% Similarity=0.208 Sum_probs=69.8
Q ss_pred CCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCC
Q 003957 626 CSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMP 705 (784)
Q Consensus 626 ~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~ 705 (784)
+++|++|++++|...... .....+++.++.|++++|. ++......+.++++|++|+|++|++ ..+++.+..++
T Consensus 170 ~~~L~~L~l~~n~~~~~~--~~~~~~~~~l~~L~~s~n~-l~~~~~~~~~~l~~L~~L~L~~N~L----~~lp~~l~~l~ 242 (305)
T d1xkua_ 170 PPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKL----VKVPGGLADHK 242 (305)
T ss_dssp CTTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCC----SSCCTTTTTCS
T ss_pred CCccCEEECCCCcCCCCC--hhHhhcccccccccccccc-ccccccccccccccceeeecccccc----ccccccccccc
Confidence 456777777766544321 1122456777777777765 5544444556778888888888865 44556677788
Q ss_pred CCceeccccccccC---CCCCccc-ccCCCCCCEEEecCCCC
Q 003957 706 MLRLVSLDLCDASD---GNFEIPD-YADRYSLSTVKITKCKS 743 (784)
Q Consensus 706 ~L~~L~L~~c~~~~---~~~~l~~-~~~~~~L~~L~is~C~~ 743 (784)
+|++|++++|.... ..|..+. .....+|+.|++++|+-
T Consensus 243 ~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~ 284 (305)
T d1xkua_ 243 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284 (305)
T ss_dssp SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence 88888888775331 1122222 45567888888888874
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.21 E-value=9.9e-14 Score=144.44 Aligned_cols=105 Identities=15% Similarity=0.125 Sum_probs=65.0
Q ss_pred CcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCc
Q 003957 629 LVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLR 708 (784)
Q Consensus 629 L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~ 708 (784)
+..++++++...... ......+++|+.+++.+|.. +.. +..+..+++|+.|++++|.+ . +.+++.++++++|+
T Consensus 199 ~~~l~l~~~~~~~~~--~~~~~~~~~l~~l~~~~~~l-~~~-~~~~~~~~~L~~L~Ls~N~l--~-g~iP~~l~~L~~L~ 271 (313)
T d1ogqa_ 199 LAFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNSL-AFD-LGKVGLSKNLNGLDLRNNRI--Y-GTLPQGLTQLKFLH 271 (313)
T ss_dssp CSEEECCSSEEEECC--GGGCCTTSCCSEEECCSSEE-CCB-GGGCCCCTTCCEEECCSSCC--E-ECCCGGGGGCTTCC
T ss_pred ccccccccccccccc--cccccccccccccccccccc-ccc-ccccccccccccccCccCee--c-ccCChHHhCCCCCC
Confidence 345666665443311 11223466777777777653 221 23455677788888888765 3 35666777788888
Q ss_pred eeccccccccCCCCCcccccCCCCCCEEEecCCCC
Q 003957 709 LVSLDLCDASDGNFEIPDYADRYSLSTVKITKCKS 743 (784)
Q Consensus 709 ~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~C~~ 743 (784)
+|+|++|... + .+|.+.++++|+.+++++|+.
T Consensus 272 ~L~Ls~N~l~-g--~iP~~~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 272 SLNVSFNNLC-G--EIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp EEECCSSEEE-E--ECCCSTTGGGSCGGGTCSSSE
T ss_pred EEECcCCccc-c--cCCCcccCCCCCHHHhCCCcc
Confidence 8888876654 3 246666777888888877764
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.17 E-value=2.4e-11 Score=125.49 Aligned_cols=247 Identities=15% Similarity=0.051 Sum_probs=164.4
Q ss_pred CCccEEEec-cccCcccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCc
Q 003957 501 RKLEEIVLG-WGFSFLSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQ 579 (784)
Q Consensus 501 ~~L~~L~L~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~ 579 (784)
+.+++|+++ +.++.+... .+..+++|++|+++++.... .....+ ..++.|+.|+++.+.++... ......++
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~-~f~~l~~L~~L~l~~n~~~~-i~~~~f-~~l~~L~~L~l~~n~l~~l~----~~~~~~l~ 103 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISK-ISPGAF-APLVKLERLYLSKNQLKELP----EKMPKTLQ 103 (305)
T ss_dssp TTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCC-BCTTTT-TTCTTCCEEECCSSCCSBCC----SSCCTTCC
T ss_pred CCCCEEECcCCcCCCcChh-Hhhccccccccccccccccc-cchhhh-hCCCccCEecccCCccCcCc----cchhhhhh
Confidence 468999994 455554433 46678899999999884321 111122 24788999999887776531 12345788
Q ss_pred EEEecccC-ChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEE
Q 003957 580 VLAICHCL-GDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISL 658 (784)
Q Consensus 580 ~L~Ls~c~-~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L 658 (784)
.|++.++. ....... ......+..+....+ ...........+..+++|+.+++++|....-. ...+++|+.|
T Consensus 104 ~L~~~~n~l~~l~~~~-~~~~~~~~~l~~~~n-~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~-----~~~~~~L~~L 176 (305)
T d1xkua_ 104 ELRVHENEITKVRKSV-FNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIP-----QGLPPSLTEL 176 (305)
T ss_dssp EEECCSSCCCBBCHHH-HTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-----SSCCTTCSEE
T ss_pred hhhccccchhhhhhhh-hhccccccccccccc-cccccCCCccccccccccCccccccCCccccC-----cccCCccCEE
Confidence 99988873 3322222 334477788888774 22221222234567889999999998765410 1237899999
Q ss_pred eecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEEE
Q 003957 659 HLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVK 737 (784)
Q Consensus 659 ~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~ 737 (784)
++.+|. .+......+.+++.++.|++++|.+ . ...+..+.++++|++|+|++|... .+|. +.++++|+.|+
T Consensus 177 ~l~~n~-~~~~~~~~~~~~~~l~~L~~s~n~l--~-~~~~~~~~~l~~L~~L~L~~N~L~----~lp~~l~~l~~L~~L~ 248 (305)
T d1xkua_ 177 HLDGNK-ITKVDAASLKGLNNLAKLGLSFNSI--S-AVDNGSLANTPHLRELHLNNNKLV----KVPGGLADHKYIQVVY 248 (305)
T ss_dssp ECTTSC-CCEECTGGGTTCTTCCEEECCSSCC--C-EECTTTGGGSTTCCEEECCSSCCS----SCCTTTTTCSSCCEEE
T ss_pred ECCCCc-CCCCChhHhhccccccccccccccc--c-ccccccccccccceeeeccccccc----ccccccccccCCCEEE
Confidence 999976 5544556677899999999999965 4 444567889999999999999655 5677 89999999999
Q ss_pred ecCCCCcCcccccccccccccccccceeEEEE
Q 003957 738 ITKCKSKNRNLCHNWSEARRQSSVHKESLVLV 769 (784)
Q Consensus 738 is~C~~~~~~~~~l~~~~~~~~~~~~~t~~l~ 769 (784)
+++|+........+..++..........+++.
T Consensus 249 Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~ 280 (305)
T d1xkua_ 249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 280 (305)
T ss_dssp CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred CCCCccCccChhhccCcchhcccCCCCEEECC
Confidence 99998554332122222333344455666665
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.14 E-value=7.8e-11 Score=115.88 Aligned_cols=188 Identities=18% Similarity=0.146 Sum_probs=131.1
Q ss_pred hhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccC-ChhHHHHhhcCCC
Q 003957 522 PAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCL-GDLSISSFKLPLP 600 (784)
Q Consensus 522 ~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~-~~~~~~~l~~~~~ 600 (784)
..+.+|+.|++.++ .+++ +..+. .+++|+.|+++.+.+++.. .+..+++|+.+++++|. .+ +..+. .++
T Consensus 38 ~~l~~L~~L~l~~~-~i~~--l~~l~-~l~~L~~L~ls~n~i~~~~---~l~~l~~l~~l~~~~n~~~~--i~~l~-~l~ 107 (227)
T d1h6ua2 38 ADLDGITTLSAFGT-GVTT--IEGVQ-YLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPLKN--VSAIA-GLQ 107 (227)
T ss_dssp HHHHTCCEEECTTS-CCCC--CTTGG-GCTTCCEEECCSSCCCCCG---GGTTCCSCCEEECCSCCCSC--CGGGT-TCT
T ss_pred HHcCCcCEEECCCC-CCCc--chhHh-cCCCCcEeecCCceeeccc---cccccccccccccccccccc--ccccc-ccc
Confidence 34567888888777 3332 23343 4788999998877777632 26778899999998872 22 22333 568
Q ss_pred CccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCC
Q 003957 601 NLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIAL 680 (784)
Q Consensus 601 ~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L 680 (784)
+|+.+.+++| ...+.. .....+.++.+.++++....... ..++++|+.|++.+|. +++. ..+.++++|
T Consensus 108 ~L~~l~l~~~--~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~-~~~~--~~l~~l~~L 175 (227)
T d1h6ua2 108 SIKTLDLTST--QITDVT---PLAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQ-VSDL--TPLANLSKL 175 (227)
T ss_dssp TCCEEECTTS--CCCCCG---GGTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCC--GGGTTCTTC
T ss_pred cccccccccc--cccccc---hhccccchhhhhchhhhhchhhh----hccccccccccccccc-cccc--hhhcccccc
Confidence 9999999886 233211 12346788999998887655221 2468899999999887 4322 236689999
Q ss_pred CEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCCCEEEecC
Q 003957 681 EDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSLSTVKITK 740 (784)
Q Consensus 681 ~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L~is~ 740 (784)
+.|++++|.+ . .++ .++++++|++|+|++|+.. .++++.++++|+.|+|++
T Consensus 176 ~~L~Ls~n~l--~--~l~-~l~~l~~L~~L~Ls~N~lt----~i~~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 176 TTLKADDNKI--S--DIS-PLASLPNLIEVHLKNNQIS----DVSPLANTSNLFIVTLTN 226 (227)
T ss_dssp CEEECCSSCC--C--CCG-GGGGCTTCCEEECTTSCCC----BCGGGTTCTTCCEEEEEE
T ss_pred eecccCCCcc--C--CCh-hhcCCCCCCEEECcCCcCC----CCcccccCCCCCEEEeeC
Confidence 9999999976 3 332 3788999999999998644 456688999999999874
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.11 E-value=1.6e-12 Score=135.10 Aligned_cols=227 Identities=12% Similarity=0.086 Sum_probs=151.0
Q ss_pred CccEEEe-ccccCc-ccHhhhhhhcCcccEEEecCCCCCChHHHHHhhccCCCCcEEEeeeeccChHHHHHHHhhCCCCc
Q 003957 502 KLEEIVL-GWGFSF-LSLEVLKPAIKLLHSITVGLGGSLGEDALRLLPTTCPMLELVVLYFQVMSDSIIINILESLRRLQ 579 (784)
Q Consensus 502 ~L~~L~L-~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~~~~~l~~L~ 579 (784)
++++|++ +.+... .+....+..+++|++|+++++..+.......+++ +++|++|+++.+.+... ....+..+++|+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~-L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~ 128 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGA-IPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEE-CCGGGGGCTTCC
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccc-ccccchhhhcccccccc-ccccccchhhhc
Confidence 5888888 444442 2344567889999999998764544332334555 78999999988877653 233467788999
Q ss_pred EEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCC-CcEEEecCCCCCChHHHHHHHhcCCCCcEE
Q 003957 580 VLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSE-LVELSLVGCTLLSSDSQLIISQGWPGLISL 658 (784)
Q Consensus 580 ~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~-L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L 658 (784)
.+++++|.....+......+++|+.++++++ .++.. +......+.. ++.+++++|+...... . ....+ .+..+
T Consensus 129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n--~l~~~-ip~~~~~l~~l~~~l~~~~n~l~~~~~-~-~~~~l-~~~~l 202 (313)
T d1ogqa_ 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGN--RISGA-IPDSYGSFSKLFTSMTISRNRLTGKIP-P-TFANL-NLAFV 202 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSS--CCEEE-CCGGGGCCCTTCCEEECCSSEEEEECC-G-GGGGC-CCSEE
T ss_pred ccccccccccccCchhhccCcccceeecccc--ccccc-ccccccccccccccccccccccccccc-c-ccccc-ccccc
Confidence 9999988322222222345689999999994 45422 1222234445 4888998887643211 1 11223 35578
Q ss_pred eecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCccc-ccCCCCCCEEE
Q 003957 659 HLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPD-YADRYSLSTVK 737 (784)
Q Consensus 659 ~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~ 737 (784)
++.++.. ....+..+..+++|+.+++++|.+ . .....+..+++|+.|++++|... + .+|. +.++++|++|+
T Consensus 203 ~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~l--~--~~~~~~~~~~~L~~L~Ls~N~l~-g--~iP~~l~~L~~L~~L~ 274 (313)
T d1ogqa_ 203 DLSRNML-EGDASVLFGSDKNTQKIHLAKNSL--A--FDLGKVGLSKNLNGLDLRNNRIY-G--TLPQGLTQLKFLHSLN 274 (313)
T ss_dssp ECCSSEE-EECCGGGCCTTSCCSEEECCSSEE--C--CBGGGCCCCTTCCEEECCSSCCE-E--CCCGGGGGCTTCCEEE
T ss_pred ccccccc-cccccccccccccccccccccccc--c--ccccccccccccccccCccCeec-c--cCChHHhCCCCCCEEE
Confidence 8877653 222233445789999999999965 2 22335777899999999998765 3 3688 99999999999
Q ss_pred ecCCCCc
Q 003957 738 ITKCKSK 744 (784)
Q Consensus 738 is~C~~~ 744 (784)
+++|+..
T Consensus 275 Ls~N~l~ 281 (313)
T d1ogqa_ 275 VSFNNLC 281 (313)
T ss_dssp CCSSEEE
T ss_pred CcCCccc
Confidence 9999754
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.4e-11 Score=124.43 Aligned_cols=175 Identities=19% Similarity=0.112 Sum_probs=119.3
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCC
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSEL 629 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L 629 (784)
++++.|+|+.|.++... ...+.++++|++|++++| +... ..+ ..+++|++|++++ +.++.. ...+.++++|
T Consensus 31 ~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~L~~N~l~~l--~~~-~~l~~L~~L~Ls~--N~l~~~--~~~~~~l~~L 102 (266)
T d1p9ag_ 31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKL--QVD-GTLPVLGTLDLSH--NQLQSL--PLLGQTLPAL 102 (266)
T ss_dssp TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCEE--ECC-SCCTTCCEEECCS--SCCSSC--CCCTTTCTTC
T ss_pred cCCCEEECcCCcCCCcC-HHHhhcccccccccccccccccc--ccc-ccccccccccccc--cccccc--cccccccccc
Confidence 35777777766665431 123567778888888877 2211 112 3457888888888 445432 2234567889
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCce
Q 003957 630 VELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRL 709 (784)
Q Consensus 630 ~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~ 709 (784)
+.|++++|....- .......+++++.|++.+|. ++......+..++.|+.|++++|.+ . ...++.+..+++|++
T Consensus 103 ~~L~l~~~~~~~~--~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l--~-~~~~~~~~~l~~L~~ 176 (266)
T d1p9ag_ 103 TVLDVSFNRLTSL--PLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNL--T-ELPAGLLNGLENLDT 176 (266)
T ss_dssp CEEECCSSCCCCC--CSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCC--S-CCCTTTTTTCTTCCE
T ss_pred cccccccccccee--eccccccccccccccccccc-cceeccccccccccchhcccccccc--c-ccCccccccccccce
Confidence 9999988876541 11223457889999998876 5444444455788999999999965 4 444556788999999
Q ss_pred eccccccccCCCCCccc-ccCCCCCCEEEecCCCC
Q 003957 710 VSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKS 743 (784)
Q Consensus 710 L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~ 743 (784)
|+|++|... .+|. +..+++|+.|++++++-
T Consensus 177 L~Ls~N~L~----~lp~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 177 LLLQENSLY----TIPKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp EECCSSCCC----CCCTTTTTTCCCSEEECCSCCB
T ss_pred eecccCCCc----ccChhHCCCCCCCEEEecCCCC
Confidence 999988755 5677 77889999999998764
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=2.7e-11 Score=123.69 Aligned_cols=107 Identities=19% Similarity=0.114 Sum_probs=54.3
Q ss_pred CCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCC
Q 003957 626 CSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMP 705 (784)
Q Consensus 626 ~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~ 705 (784)
+++|+.+++++|.+..- .......+++|+.|++++|+ ++......+.++++|+.+++++|.+ . ...+..+.+++
T Consensus 128 ~~~L~~l~l~~N~l~~i--~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~~L~~l~l~~N~l--~-~i~~~~f~~l~ 201 (284)
T d1ozna_ 128 LAALQYLYLQDNALQAL--PDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRV--A-HVHPHAFRDLG 201 (284)
T ss_dssp CTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC--C-EECTTTTTTCT
T ss_pred hcccchhhhcccccccc--ChhHhccccchhhcccccCc-ccccchhhhccccccchhhhhhccc--c-ccChhHhhhhh
Confidence 44555555555544321 11112345556666666554 4433333444566666666666643 3 33344555666
Q ss_pred CCceeccccccccCCCCCccc--ccCCCCCCEEEecCCC
Q 003957 706 MLRLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCK 742 (784)
Q Consensus 706 ~L~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~ 742 (784)
+|+.|++++|... .++. +.++++|++|++++++
T Consensus 202 ~L~~L~l~~N~i~----~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 202 RLMTLYLFANNLS----ALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp TCCEEECCSSCCS----CCCHHHHTTCTTCCEEECCSSC
T ss_pred hcccccccccccc----cccccccccccccCEEEecCCC
Confidence 6666666665544 2222 5566666666666654
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.5e-10 Score=117.98 Aligned_cols=108 Identities=15% Similarity=0.036 Sum_probs=49.0
Q ss_pred CCCcEEEeeeeccChHHHHHHHhhCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCc
Q 003957 551 PMLELVVLYFQVMSDSIIINILESLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELV 630 (784)
Q Consensus 551 ~~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~ 630 (784)
++|+.++++.+.++... ...+..+++|++|++++|.-..........+++|+.+.+.+ +.++... ...+.++++|+
T Consensus 129 ~~L~~l~l~~N~l~~i~-~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~--N~l~~i~-~~~f~~l~~L~ 204 (284)
T d1ozna_ 129 AALQYLYLQDNALQALP-DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ--NRVAHVH-PHAFRDLGRLM 204 (284)
T ss_dssp TTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--SCCCEEC-TTTTTTCTTCC
T ss_pred cccchhhhccccccccC-hhHhccccchhhcccccCcccccchhhhccccccchhhhhh--ccccccC-hhHhhhhhhcc
Confidence 34444444444443311 12234445555555555521111111222345566666655 2343221 12234455666
Q ss_pred EEEecCCCCCChHHHHHHHhcCCCCcEEeecCCC
Q 003957 631 ELSLVGCTLLSSDSQLIISQGWPGLISLHLEECG 664 (784)
Q Consensus 631 ~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~ 664 (784)
+|++++|..... ......++++|+.|+|++|+
T Consensus 205 ~L~l~~N~i~~~--~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 205 TLYLFANNLSAL--PTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp EEECCSSCCSCC--CHHHHTTCTTCCEEECCSSC
T ss_pred cccccccccccc--cccccccccccCEEEecCCC
Confidence 666666665442 12233456666666666654
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.00 E-value=3e-10 Score=110.07 Aligned_cols=144 Identities=22% Similarity=0.171 Sum_probs=82.2
Q ss_pred hhCCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhc
Q 003957 573 ESLRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQG 651 (784)
Q Consensus 573 ~~l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~ 651 (784)
+.+++|++|++++| +.+.. .+ ..+++|++|+++++ .+++.. ....+++|+.|++++|....-. ...+
T Consensus 65 ~~l~~L~~L~L~~n~i~~l~--~~-~~l~~L~~L~l~~n--~i~~l~---~l~~l~~L~~L~l~~~~~~~~~----~l~~ 132 (210)
T d1h6ta2 65 QYLPNVTKLFLNGNKLTDIK--PL-ANLKNLGWLFLDEN--KVKDLS---SLKDLKKLKSLSLEHNGISDIN----GLVH 132 (210)
T ss_dssp GGCTTCCEEECCSSCCCCCG--GG-TTCTTCCEEECCSS--CCCCGG---GGTTCTTCCEEECTTSCCCCCG----GGGG
T ss_pred hhCCCCCEEeCCCccccCcc--cc-ccCccccccccccc--cccccc---cccccccccccccccccccccc----cccc
Confidence 34555555555555 22211 11 23456666666663 454321 1345667777777776654311 1234
Q ss_pred CCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCC
Q 003957 652 WPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRY 731 (784)
Q Consensus 652 ~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~ 731 (784)
++.|+.+++.+|. +++. ..+..+++|+.+++++|.+ . .+. .+.++++|++|++++|... .+|.+..++
T Consensus 133 l~~l~~l~~~~n~-l~~~--~~~~~l~~L~~l~l~~n~l--~--~i~-~l~~l~~L~~L~Ls~N~i~----~l~~l~~l~ 200 (210)
T d1h6ta2 133 LPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDNQI--S--DIV-PLAGLTKLQNLYLSKNHIS----DLRALAGLK 200 (210)
T ss_dssp CTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCC--C--CCG-GGTTCTTCCEEECCSSCCC----BCGGGTTCT
T ss_pred ccccccccccccc-cccc--ccccccccccccccccccc--c--ccc-cccCCCCCCEEECCCCCCC----CChhhcCCC
Confidence 6777777777665 4322 2334677777777777765 2 222 2667777888888777543 345677778
Q ss_pred CCCEEEecC
Q 003957 732 SLSTVKITK 740 (784)
Q Consensus 732 ~L~~L~is~ 740 (784)
+|++|+|++
T Consensus 201 ~L~~L~Ls~ 209 (210)
T d1h6ta2 201 NLDVLELFS 209 (210)
T ss_dssp TCSEEEEEE
T ss_pred CCCEEEccC
Confidence 888888763
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.97 E-value=4.7e-10 Score=107.65 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=45.8
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcC
Q 003957 625 NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKM 704 (784)
Q Consensus 625 ~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l 704 (784)
++++|+.|++++|....... ..++++|+.|++++|. ++. +..+..+++|+.|++++|.+ . .+ ..++++
T Consensus 104 ~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~-l~~--~~~l~~~~~L~~L~l~~n~l--~--~l-~~l~~l 171 (199)
T d2omxa2 104 NLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNT-ISD--ISALSGLTSLQQLNFSSNQV--T--DL-KPLANL 171 (199)
T ss_dssp TCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSC-CCC--CGGGTTCTTCSEEECCSSCC--C--CC-GGGTTC
T ss_pred cccccccccccccccccccc----cchhhhhHHhhhhhhh-hcc--cccccccccccccccccccc--c--CC-ccccCC
Confidence 45555555555554443111 1235555566655554 322 12344555666666665543 2 11 124555
Q ss_pred CCCceeccccccccCCCCCcccccCCCCCCEE
Q 003957 705 PMLRLVSLDLCDASDGNFEIPDYADRYSLSTV 736 (784)
Q Consensus 705 ~~L~~L~L~~c~~~~~~~~l~~~~~~~~L~~L 736 (784)
++|+.|++++|+.. .++.+..+++|++|
T Consensus 172 ~~L~~L~ls~N~i~----~i~~l~~L~~L~~L 199 (199)
T d2omxa2 172 TTLERLDISSNKVS----DISVLAKLTNLESL 199 (199)
T ss_dssp TTCCEEECCSSCCC----CCGGGGGCTTCSEE
T ss_pred CCCCEEECCCCCCC----CCccccCCCCCCcC
Confidence 56666666655432 23334455555543
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=98.97 E-value=2.6e-09 Score=104.64 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=45.6
Q ss_pred hcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCC
Q 003957 383 TLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSG 461 (784)
Q Consensus 383 ~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~ 461 (784)
...+.++.+.++++....... ...+++|+.|++++|.+.+... +. .++|++|++++|.+++.. . +.++++
T Consensus 126 ~~~~~~~~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~--~-l~~l~~ 196 (227)
T d1h6ua2 126 AGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS--P-LASLPN 196 (227)
T ss_dssp TTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--G-GGGCTT
T ss_pred ccccchhhhhchhhhhchhhh----hccccccccccccccccccchh--hcccccceecccCCCccCCCh--h-hcCCCC
Confidence 345556666665554422111 1456666666666665543321 22 466777777776665432 1 356677
Q ss_pred ccEEeccCCCcccc
Q 003957 462 LKYLNARGCKNLFQ 475 (784)
Q Consensus 462 L~~L~L~~c~~l~~ 475 (784)
|++|++++| .+++
T Consensus 197 L~~L~Ls~N-~lt~ 209 (227)
T d1h6ua2 197 LIEVHLKNN-QISD 209 (227)
T ss_dssp CCEEECTTS-CCCB
T ss_pred CCEEECcCC-cCCC
Confidence 777777766 3443
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.92 E-value=7.7e-10 Score=115.90 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=66.1
Q ss_pred CCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCC
Q 003957 343 VKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGT 422 (784)
Q Consensus 343 ~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~ 422 (784)
.++++|+++++.++. +|. ..++|++|+++++.. +. ++ ....+|+.|+++++
T Consensus 38 ~~l~~LdLs~~~L~~--------------------lp~---~~~~L~~L~Ls~N~l-~~--lp---~~~~~L~~L~l~~n 88 (353)
T d1jl5a_ 38 RQAHELELNNLGLSS--------------------LPE---LPPHLESLVASCNSL-TE--LP---ELPQSLKSLLVDNN 88 (353)
T ss_dssp HTCSEEECTTSCCSC--------------------CCS---CCTTCSEEECCSSCC-SS--CC---CCCTTCCEEECCSS
T ss_pred cCCCEEEeCCCCCCC--------------------CCC---CCCCCCEEECCCCCC-cc--cc---cchhhhhhhhhhhc
Confidence 478888888887765 443 357899999987754 21 21 23578999999998
Q ss_pred cCchhhhhhcccCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCC
Q 003957 423 QLADKALYNFSGSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCK 471 (784)
Q Consensus 423 ~l~~~~~~~l~~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~ 471 (784)
.++... .+ .+.|++|++++|.+.... . ...+++|++|++.++.
T Consensus 89 ~l~~l~--~l-p~~L~~L~L~~n~l~~lp--~-~~~l~~L~~L~l~~~~ 131 (353)
T d1jl5a_ 89 NLKALS--DL-PPLLEYLGVSNNQLEKLP--E-LQNSSFLKIIDVDNNS 131 (353)
T ss_dssp CCSCCC--SC-CTTCCEEECCSSCCSSCC--C-CTTCTTCCEEECCSSC
T ss_pred ccchhh--hh-cccccccccccccccccc--c-hhhhccceeecccccc
Confidence 766432 11 357999999999776532 1 2567899999998764
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=4.6e-11 Score=120.63 Aligned_cols=134 Identities=23% Similarity=0.121 Sum_probs=71.8
Q ss_pred hCCCCcEEEecccCChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCC
Q 003957 574 SLRRLQVLAICHCLGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWP 653 (784)
Q Consensus 574 ~l~~L~~L~Ls~c~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~ 653 (784)
.+++|+.|++++|.-... ......+++|+.|+++++ .+..... .....++++++|++++|.+..- ......+++
T Consensus 75 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~--~~~~~~~-~~~~~l~~l~~L~l~~n~l~~l--~~~~~~~l~ 148 (266)
T d1p9ag_ 75 TLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFN--RLTSLPL-GALRGLGELQELYLKGNELKTL--PPGLLTPTP 148 (266)
T ss_dssp CCTTCCEEECCSSCCSSC-CCCTTTCTTCCEEECCSS--CCCCCCS-STTTTCTTCCEEECTTSCCCCC--CTTTTTTCT
T ss_pred cccccccccccccccccc-cccccccccccccccccc--ccceeec-ccccccccccccccccccccee--ccccccccc
Confidence 345555555555521111 112233456666666653 2221111 1123455677777776654431 112223466
Q ss_pred CCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceecccccccc
Q 003957 654 GLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDAS 718 (784)
Q Consensus 654 ~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~ 718 (784)
+|+.|++++|+ ++......+..+++|++|+|++|.+ ..+++.+..+++|+.|+|++|+..
T Consensus 149 ~l~~l~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~L----~~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 149 KLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSL----YTIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp TCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCC----CCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cchhccccccc-ccccCccccccccccceeecccCCC----cccChhHCCCCCCCEEEecCCCCC
Confidence 77777777765 5444444455677777777777765 445555566777777777776643
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.90 E-value=1.1e-10 Score=122.56 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=45.6
Q ss_pred cCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCC
Q 003957 651 GWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADR 730 (784)
Q Consensus 651 ~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~ 730 (784)
.+++|++|+|++|. ++.. + ..+++|+.|++++|.+ ..+++ .+++|++|++++|+.. .+|...
T Consensus 282 ~~~~L~~L~Ls~N~-l~~l--p--~~~~~L~~L~L~~N~L----~~l~~---~~~~L~~L~L~~N~L~----~lp~~~-- 343 (353)
T d1jl5a_ 282 LPPSLEELNVSNNK-LIEL--P--ALPPRLERLIASFNHL----AEVPE---LPQNLKQLHVEYNPLR----EFPDIP-- 343 (353)
T ss_dssp CCTTCCEEECCSSC-CSCC--C--CCCTTCCEEECCSSCC----SCCCC---CCTTCCEEECCSSCCS----SCCCCC--
T ss_pred cCCCCCEEECCCCc-cCcc--c--cccCCCCEEECCCCcC----Ccccc---ccCCCCEEECcCCcCC----CCCccc--
Confidence 35778888888775 4321 1 2467888888888865 33322 3467888999888744 456532
Q ss_pred CCCCEEEec
Q 003957 731 YSLSTVKIT 739 (784)
Q Consensus 731 ~~L~~L~is 739 (784)
.+|+.|.+.
T Consensus 344 ~~L~~L~~~ 352 (353)
T d1jl5a_ 344 ESVEDLRMN 352 (353)
T ss_dssp TTCCEEECC
T ss_pred cccCeeECc
Confidence 467777764
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.85 E-value=3.8e-09 Score=101.16 Aligned_cols=147 Identities=18% Similarity=0.185 Sum_probs=108.0
Q ss_pred CCCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCC
Q 003957 575 LRRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWP 653 (784)
Q Consensus 575 l~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~ 653 (784)
++++++|++++| +.+. ..+ ..+++|++|+++++ .+++.. . +.++++|+.|++++|....... ..+++
T Consensus 39 l~~l~~L~l~~~~i~~l--~~l-~~l~nL~~L~Ls~N--~l~~~~--~-l~~l~~L~~L~l~~n~~~~~~~----l~~l~ 106 (199)
T d2omxa2 39 LDQVTTLQADRLGIKSI--DGV-EYLNNLTQINFSNN--QLTDIT--P-LKNLTKLVDILMNNNQIADITP----LANLT 106 (199)
T ss_dssp HTTCCEEECTTSCCCCC--TTG-GGCTTCCEEECCSS--CCCCCG--G-GTTCTTCCEEECCSSCCCCCGG----GTTCT
T ss_pred hcCCCEEECCCCCCCCc--ccc-ccCCCcCcCccccc--cccCcc--c-ccCCcccccccccccccccccc----ccccc
Confidence 456777777776 2221 122 34588888888884 566432 1 5678899999999988765321 35789
Q ss_pred CCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCCceeccccccccCCCCCcccccCCCCC
Q 003957 654 GLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPMLRLVSLDLCDASDGNFEIPDYADRYSL 733 (784)
Q Consensus 654 ~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L~~L~L~~c~~~~~~~~l~~~~~~~~L 733 (784)
.|+.|++++|..... ..+.++++|+.|++++|.+ ..+ +.+..+++|+.|.+.+|... .++++.++++|
T Consensus 107 ~L~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~n~l----~~~-~~l~~~~~L~~L~l~~n~l~----~l~~l~~l~~L 174 (199)
T d2omxa2 107 NLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTI----SDI-SALSGLTSLQQLNFSSNQVT----DLKPLANLTTL 174 (199)
T ss_dssp TCSEEECCSSCCCCC---GGGTTCTTCSEEECCSSCC----CCC-GGGTTCTTCSEEECCSSCCC----CCGGGTTCTTC
T ss_pred ccccccccccccccc---cccchhhhhHHhhhhhhhh----ccc-cccccccccccccccccccc----CCccccCCCCC
Confidence 999999999875442 2356899999999999976 322 34788999999999998665 45668899999
Q ss_pred CEEEecCCCCcC
Q 003957 734 STVKITKCKSKN 745 (784)
Q Consensus 734 ~~L~is~C~~~~ 745 (784)
++|++++|+..+
T Consensus 175 ~~L~ls~N~i~~ 186 (199)
T d2omxa2 175 ERLDISSNKVSD 186 (199)
T ss_dssp CEEECCSSCCCC
T ss_pred CEEECCCCCCCC
Confidence 999999998544
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.82 E-value=1.1e-08 Score=98.70 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=98.1
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCc
Q 003957 290 PSKITKLTLEGRSDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPY 369 (784)
Q Consensus 290 l~~L~~L~Ls~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~ 369 (784)
+.+|++|++++|.. ++. ..+ ..+++|++|++++|. +++.. . +..+++|+.|++++|.++.
T Consensus 45 L~~L~~L~l~~~~i-~~l--~~l-~~l~~L~~L~L~~n~-i~~l~--~-~~~l~~L~~L~l~~n~i~~------------ 104 (210)
T d1h6ta2 45 LNSIDQIIANNSDI-KSV--QGI-QYLPNVTKLFLNGNK-LTDIK--P-LANLKNLGWLFLDENKVKD------------ 104 (210)
T ss_dssp HHTCCEEECTTSCC-CCC--TTG-GGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSCCCC------------
T ss_pred hcCccEEECcCCCC-CCc--hhH-hhCCCCCEEeCCCcc-ccCcc--c-cccCccccccccccccccc------------
Confidence 46788888888753 321 112 358889999998863 33321 1 2467888888888888765
Q ss_pred cCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcccCCcCEEEecCCccch
Q 003957 370 CNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFSGSSLEMLDVSDTMISG 449 (784)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~L~~L~Ls~~~i~~ 449 (784)
++. +..+++|+.|++++|....- ..+ ..+++++.++++++.+++..... ..++|+++++++|.+++
T Consensus 105 --------l~~-l~~l~~L~~L~l~~~~~~~~---~~l-~~l~~l~~l~~~~n~l~~~~~~~-~l~~L~~l~l~~n~l~~ 170 (210)
T d1h6ta2 105 --------LSS-LKDLKKLKSLSLEHNGISDI---NGL-VHLPQLESLYLGNNKITDITVLS-RLTKLDTLSLEDNQISD 170 (210)
T ss_dssp --------GGG-GTTCTTCCEEECTTSCCCCC---GGG-GGCTTCCEEECCSSCCCCCGGGG-GCTTCSEEECCSSCCCC
T ss_pred --------ccc-cccccccccccccccccccc---ccc-ccccccccccccccccccccccc-ccccccccccccccccc
Confidence 222 26678888888888765322 222 67788888888888776543211 15788888888887765
Q ss_pred hhHHHHHhcCCCccEEeccCCCcccc
Q 003957 450 AALAYMVHGNSGLKYLNARGCKNLFQ 475 (784)
Q Consensus 450 ~~l~~~~~~l~~L~~L~L~~c~~l~~ 475 (784)
.. . +.++++|++|++++| .+++
T Consensus 171 i~--~-l~~l~~L~~L~Ls~N-~i~~ 192 (210)
T d1h6ta2 171 IV--P-LAGLTKLQNLYLSKN-HISD 192 (210)
T ss_dssp CG--G-GTTCTTCCEEECCSS-CCCB
T ss_pred cc--c-ccCCCCCCEEECCCC-CCCC
Confidence 32 1 357788888888776 4443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=6.2e-09 Score=95.83 Aligned_cols=107 Identities=12% Similarity=0.039 Sum_probs=76.6
Q ss_pred hCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEec
Q 003957 341 RCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLS 420 (784)
Q Consensus 341 ~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls 420 (784)
++.+++.|+|++|.|+. ++.....+++|+.|+|++|..-+ +.. +..+++|+.|+++
T Consensus 16 n~~~lr~L~L~~n~I~~--------------------i~~~~~~l~~L~~L~Ls~N~i~~---l~~-~~~l~~L~~L~ls 71 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPV--------------------IENLGATLDQFDAIDFSDNEIRK---LDG-FPLLRRLKTLLVN 71 (162)
T ss_dssp CTTSCEEEECTTSCCCS--------------------CCCGGGGTTCCSEEECCSSCCCE---ECC-CCCCSSCCEEECC
T ss_pred CcCcCcEEECCCCCCCc--------------------cCccccccccCCEEECCCCCCCc---cCC-cccCcchhhhhcc
Confidence 34678888888888776 44445678889999999886522 222 2678889999999
Q ss_pred CCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCC
Q 003957 421 GTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCK 471 (784)
Q Consensus 421 ~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~ 471 (784)
+|.++......+. .++|++|++++|.+++..-...+..+++|++|++.+|.
T Consensus 72 ~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~ 123 (162)
T d1a9na_ 72 NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 123 (162)
T ss_dssp SSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred cccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCc
Confidence 9888776544443 68899999999887654322234678999999998874
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1.1e-09 Score=108.58 Aligned_cols=80 Identities=14% Similarity=-0.022 Sum_probs=38.0
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPML 707 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L 707 (784)
.++.|++++|....-. . .....++++.+....++.++......+.++++|++|++++|++ . ......+.++++|
T Consensus 154 ~l~~L~l~~n~l~~i~--~-~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l--~-~l~~~~~~~l~~L 227 (242)
T d1xwdc1 154 ESVILWLNKNGIQEIH--N-CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI--H-SLPSYGLENLKKL 227 (242)
T ss_dssp SCEEEECCSSCCCEEC--T-TTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCC--C-CCCSSSCTTCCEE
T ss_pred cceeeecccccccccc--c-ccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcC--C-ccCHHHHcCCccc
Confidence 5566666655443200 0 1112344555544344445543333455677777777777754 2 1112234444555
Q ss_pred ceeccc
Q 003957 708 RLVSLD 713 (784)
Q Consensus 708 ~~L~L~ 713 (784)
+.+++.
T Consensus 228 ~~l~~~ 233 (242)
T d1xwdc1 228 RARSTY 233 (242)
T ss_dssp ESSSEE
T ss_pred ccCcCC
Confidence 554443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=8.1e-09 Score=95.01 Aligned_cols=33 Identities=9% Similarity=-0.058 Sum_probs=13.5
Q ss_pred CCcEEEeeeeccChHHHHHHHhhCCCCcEEEeccc
Q 003957 552 MLELVVLYFQVMSDSIIINILESLRRLQVLAICHC 586 (784)
Q Consensus 552 ~L~~L~L~~~~i~~~~l~~~~~~l~~L~~L~Ls~c 586 (784)
.+++|+++++.|+.. +.++..+++|+.|++++|
T Consensus 19 ~lr~L~L~~n~I~~i--~~~~~~l~~L~~L~Ls~N 51 (162)
T d1a9na_ 19 RDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDN 51 (162)
T ss_dssp SCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSS
T ss_pred cCcEEECCCCCCCcc--CccccccccCCEEECCCC
Confidence 444444444444431 122233444444444444
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.50 E-value=5.2e-08 Score=84.99 Aligned_cols=102 Identities=9% Similarity=0.094 Sum_probs=69.1
Q ss_pred HhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEe
Q 003957 340 RRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCL 419 (784)
Q Consensus 340 ~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L 419 (784)
.++++|++|++++|.++. +|..+..+++|+.|++++|..-+ ++.+ ..+++|+.|++
T Consensus 17 ~~l~~L~~L~ls~N~l~~--------------------lp~~~~~l~~L~~L~l~~N~i~~---l~~~-~~l~~L~~L~l 72 (124)
T d1dcea3 17 EQLLLVTHLDLSHNRLRA--------------------LPPALAALRCLEVLQASDNALEN---VDGV-ANLPRLQELLL 72 (124)
T ss_dssp GGGTTCCEEECCSSCCCC--------------------CCGGGGGCTTCCEEECCSSCCCC---CGGG-TTCSSCCEEEC
T ss_pred ccCCCCCEEECCCCccCc--------------------chhhhhhhhcccccccccccccc---cCcc-ccccccCeEEC
Confidence 456777888888777765 44445678888888888875532 2222 67888888888
Q ss_pred cCCcCchhh-hhhcc-cCCcCEEEecCCccchhh--HHHHHhcCCCccEE
Q 003957 420 SGTQLADKA-LYNFS-GSSLEMLDVSDTMISGAA--LAYMVHGNSGLKYL 465 (784)
Q Consensus 420 s~~~l~~~~-~~~l~-~~~L~~L~Ls~~~i~~~~--l~~~~~~l~~L~~L 465 (784)
++|.+++.. +..+. .++|++|++++|.++... ...+...+|+|+.|
T Consensus 73 ~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 73 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 888877654 34444 578888888888765422 23455667888776
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=1.3e-08 Score=100.55 Aligned_cols=18 Identities=17% Similarity=0.099 Sum_probs=11.7
Q ss_pred HhcCCCCcEEEecCCCCC
Q 003957 623 TQNCSELVELSLVGCTLL 640 (784)
Q Consensus 623 ~~~~~~L~~L~Ls~c~~~ 640 (784)
+.++++|++|++++|++.
T Consensus 197 f~~l~~L~~L~Ls~N~l~ 214 (242)
T d1xwdc1 197 FHGASGPVILDISRTRIH 214 (242)
T ss_dssp TTTSCCCSEEECTTSCCC
T ss_pred hcCCCCCCEEECCCCcCC
Confidence 345667777777777654
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.39 E-value=9.6e-07 Score=81.17 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=30.4
Q ss_pred HHHHHHcCCCCCeEecCCCCccCHHHHHHHHHh---CCCCCEEEeeCCCCCHHHHHHh
Q 003957 309 LEFISKYCVSLGYINIKGCVSVTDVCISNLIRR---CVKLQSIIVCDTSFGVYSIRAL 363 (784)
Q Consensus 309 l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~---~~~L~~L~Ls~~~i~~~~l~~l 363 (784)
+..+..+.++|++|+|+++..+++.++..++.. .++|++|++++|.+++.+...+
T Consensus 7 l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~l 64 (167)
T d1pgva_ 7 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL 64 (167)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH
T ss_pred HHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHH
Confidence 455555556666666665555555555544432 3456666666666665555443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.39 E-value=9e-08 Score=83.43 Aligned_cols=86 Identities=19% Similarity=0.140 Sum_probs=38.9
Q ss_pred cCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcC
Q 003957 625 NCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKM 704 (784)
Q Consensus 625 ~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l 704 (784)
++++|++|++++|.+..- ... ..++++|+.|++++|. ++. ++.+..+++|+.|++++|.+ .+-.....+..+
T Consensus 18 ~l~~L~~L~ls~N~l~~l--p~~-~~~l~~L~~L~l~~N~-i~~--l~~~~~l~~L~~L~l~~N~i--~~~~~~~~l~~~ 89 (124)
T d1dcea3 18 QLLLVTHLDLSHNRLRAL--PPA-LAALRCLEVLQASDNA-LEN--VDGVANLPRLQELLLCNNRL--QQSAAIQPLVSC 89 (124)
T ss_dssp GGTTCCEEECCSSCCCCC--CGG-GGGCTTCCEEECCSSC-CCC--CGGGTTCSSCCEEECCSSCC--CSSSTTGGGGGC
T ss_pred cCCCCCEEECCCCccCcc--hhh-hhhhhccccccccccc-ccc--cCccccccccCeEECCCCcc--CCCCCchhhcCC
Confidence 444555555555544331 011 1335555555555544 332 12344555555555555544 111111234455
Q ss_pred CCCceecccccccc
Q 003957 705 PMLRLVSLDLCDAS 718 (784)
Q Consensus 705 ~~L~~L~L~~c~~~ 718 (784)
++|+.|++++|+..
T Consensus 90 ~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 90 PRLVLLNLQGNSLC 103 (124)
T ss_dssp TTCCEEECTTSGGG
T ss_pred CCCCEEECCCCcCC
Confidence 55555555555443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.32 E-value=5.5e-08 Score=92.21 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=54.3
Q ss_pred CCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCCC
Q 003957 628 ELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPML 707 (784)
Q Consensus 628 ~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~L 707 (784)
++++|+|++|.+.... ......++++|+.|+|+++. +.......+..+++|++|++++|.+ . ...++++.++++|
T Consensus 30 ~l~~L~Ls~N~i~~~~-~~~~f~~l~~L~~L~L~~N~-i~~~~~~~~~~~~~L~~L~Ls~N~l--~-~l~~~~F~~l~~L 104 (192)
T d1w8aa_ 30 HTTELLLNDNELGRIS-SDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKI--K-EISNKMFLGLHQL 104 (192)
T ss_dssp TCSEEECCSCCCCSBC-CSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCCC--C-EECSSSSTTCTTC
T ss_pred CCCEEEeCCCCCcccc-cccccCCCceEeeeeccccc-cccccccccccccccceeeeccccc--c-ccCHHHHhCCCcc
Confidence 4555555555543200 01112345566666665554 3333333444566666666666654 2 2233345566666
Q ss_pred ceeccccccccCCCCCccc--ccCCCCCCEEEecCCC
Q 003957 708 RLVSLDLCDASDGNFEIPD--YADRYSLSTVKITKCK 742 (784)
Q Consensus 708 ~~L~L~~c~~~~~~~~l~~--~~~~~~L~~L~is~C~ 742 (784)
++|+|++|... .+|+ |..+++|++|++++++
T Consensus 105 ~~L~L~~N~l~----~i~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 105 KTLNLYDNQIS----CVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CEEECCSSCCC----EECTTSSTTCTTCCEEECTTCC
T ss_pred cccccCCcccc----ccCHHHhcCCcccccccccccc
Confidence 66666665544 3333 5666666666666655
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.31 E-value=5.3e-08 Score=92.66 Aligned_cols=147 Identities=14% Similarity=0.161 Sum_probs=99.3
Q ss_pred CCccEEecCCC-CCCChHHHHHHHHcCCCCCeEecCCCCccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCc
Q 003957 291 SKITKLTLEGR-SDMCDADLEFISKYCVSLGYINIKGCVSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPY 369 (784)
Q Consensus 291 ~~L~~L~Ls~~-~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~ 369 (784)
..++.+++.+. ..+.. +..-...+++|++|+++++ .+++. +. +.++++|+.|++++|.++.
T Consensus 23 ~~~~~~~l~~~~~~i~~--l~~sl~~L~~L~~L~Ls~n-~I~~i--~~-l~~l~~L~~L~Ls~N~i~~------------ 84 (198)
T d1m9la_ 23 TEAEKVELHGMIPPIEK--MDATLSTLKACKHLALSTN-NIEKI--SS-LSGMENLRILSLGRNLIKK------------ 84 (198)
T ss_dssp TTCSCEECCBCCTTCCC--CHHHHHHTTTCCEEECSEE-EESCC--CC-HHHHTTCCEEECCEEEECS------------
T ss_pred cccceeeeecccCchhh--hhhHHhcccccceeECccc-CCCCc--cc-ccCCccccChhhccccccc------------
Confidence 44566666653 22332 1111234789999999985 34432 11 4578999999999998765
Q ss_pred cCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhh-hhhcc-cCCcCEEEecCCcc
Q 003957 370 CNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKA-LYNFS-GSSLEMLDVSDTMI 447 (784)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~-~~~l~-~~~L~~L~Ls~~~i 447 (784)
++.....+++|+.|++++|..- . +..+ ..+++|+.|++++|.+++.. +..+. .++|++|++++|.+
T Consensus 85 --------i~~~~~~~~~L~~L~l~~N~i~-~--l~~~-~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 85 --------IENLDAVADTLEELWISYNQIA-S--LSGI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp --------CSSHHHHHHHCCEEECSEEECC-C--HHHH-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred --------cccccccccccccccccccccc-c--cccc-cccccccccccccchhccccccccccCCCccceeecCCCcc
Confidence 3334455668999999998653 2 3333 67899999999999988764 44555 68999999999865
Q ss_pred chhh---------HHHHHhcCCCccEEec
Q 003957 448 SGAA---------LAYMVHGNSGLKYLNA 467 (784)
Q Consensus 448 ~~~~---------l~~~~~~l~~L~~L~L 467 (784)
.... ...++..+|+|++|+-
T Consensus 153 ~~~~~~~~~~~~~r~~vi~~lp~L~~LD~ 181 (198)
T d1m9la_ 153 YNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred ccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence 4321 1234578999999973
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.27 E-value=2.2e-06 Score=78.65 Aligned_cols=122 Identities=13% Similarity=0.177 Sum_probs=94.3
Q ss_pred HHHHHHHHhCCCCCEEEeeCC-CCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCCCCCCHHHHHHH---H
Q 003957 333 VCISNLIRRCVKLQSIIVCDT-SFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACCNGVDGMYLLEL---M 408 (784)
Q Consensus 333 ~~l~~l~~~~~~L~~L~Ls~~-~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~l~~l---~ 408 (784)
..+..+..+.++|++|+|+++ .++..++..++..+ ...+.|++|+|++|. +++.+...+ .
T Consensus 5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L---------------~~n~~L~~L~Ls~n~-l~~~~~~~la~~L 68 (167)
T d1pgva_ 5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAA---------------CNSKHIEKFSLANTA-ISDSEARGLIELI 68 (167)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHH---------------TTCSCCCEEECTTSC-CBHHHHTTHHHHH
T ss_pred HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHH---------------hhCCccceeeccccc-cchhHHHHHhhhh
Confidence 346677778899999999985 79999988875433 567789999999985 465554433 4
Q ss_pred HhCccccEEEecCCcCchhhhhhcc-----cCCcCEEEecCCc---cchhh---HHHHHhcCCCccEEeccCC
Q 003957 409 CQARKLKSLCLSGTQLADKALYNFS-----GSSLEMLDVSDTM---ISGAA---LAYMVHGNSGLKYLNARGC 470 (784)
Q Consensus 409 ~~~~~L~~L~Ls~~~l~~~~~~~l~-----~~~L~~L~Ls~~~---i~~~~---l~~~~~~l~~L~~L~L~~c 470 (784)
...+.|+.|++++|.+++.+...+. .++|++|+++++. +.+.+ +...+...++|+.|+++..
T Consensus 69 ~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 69 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred hhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 5789999999999999998877665 4789999999874 44433 4556677899999998654
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.24 E-value=4.9e-08 Score=92.53 Aligned_cols=109 Identities=24% Similarity=0.168 Sum_probs=58.4
Q ss_pred CCCcEEEeccc-CChhHHHHhhcCCCCccEEEccCCCCCCChHHHHHHHhcCCCCcEEEecCCCCCChHHHHHHHhcCCC
Q 003957 576 RRLQVLAICHC-LGDLSISSFKLPLPNLRKLKLERVTPWMTNNDLVILTQNCSELVELSLVGCTLLSSDSQLIISQGWPG 654 (784)
Q Consensus 576 ~~L~~L~Ls~c-~~~~~~~~l~~~~~~L~~L~L~~c~~~l~~~~l~~l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~ 654 (784)
+++++|+|++| ++..........+++|++|++++ +.+..... ..+..+++|++|++++|.+.. .......++++
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~--N~i~~~~~-~~~~~~~~L~~L~Ls~N~l~~--l~~~~F~~l~~ 103 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR--NQLTGIEP-NAFEGASHIQELQLGENKIKE--ISNKMFLGLHQ 103 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS--SCCCCBCT-TTTTTCTTCCEEECCSCCCCE--ECSSSSTTCTT
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeeccc--cccccccc-cccccccccceeeeccccccc--cCHHHHhCCCc
Confidence 36777777777 32222222233446777777766 34432211 223345667777777665443 11112345666
Q ss_pred CcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCC
Q 003957 655 LISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGP 690 (784)
Q Consensus 655 L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~ 690 (784)
|+.|+|++|. ++......|.++++|++|+|++|.+
T Consensus 104 L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~ 138 (192)
T d1w8aa_ 104 LKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCB
T ss_pred ccccccCCcc-ccccCHHHhcCCccccccccccccc
Confidence 6677766655 5444444455666666666666654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.22 E-value=7e-06 Score=75.13 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=28.9
Q ss_pred HHHHHHcCCCCCeEecCCCCccCHHHHHHHHH---hCCCCCEEEeeCCCCCHHHHHHh
Q 003957 309 LEFISKYCVSLGYINIKGCVSVTDVCISNLIR---RCVKLQSIIVCDTSFGVYSIRAL 363 (784)
Q Consensus 309 l~~l~~~~~~L~~L~L~~c~~l~~~~l~~l~~---~~~~L~~L~Ls~~~i~~~~l~~l 363 (784)
+..+..+.++|++|+++++..+++.++..++. .+++|++|++++|.+++.+..++
T Consensus 9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L 66 (166)
T d1io0a_ 9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL 66 (166)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH
T ss_pred HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHH
Confidence 44444445556666655544555555544443 23555555555555555555544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.20 E-value=1.2e-05 Score=73.46 Aligned_cols=119 Identities=15% Similarity=0.114 Sum_probs=91.1
Q ss_pred CCCCccEEecCCCCCCChHHHHHHHH---cCCCCCeEecCCCCccCHHHHHHH---HHhCCCCCEEEeeCCCCCHHHHHH
Q 003957 289 SPSKITKLTLEGRSDMCDADLEFISK---YCVSLGYINIKGCVSVTDVCISNL---IRRCVKLQSIIVCDTSFGVYSIRA 362 (784)
Q Consensus 289 ~l~~L~~L~Ls~~~~l~~~~l~~l~~---~~~~L~~L~L~~c~~l~~~~l~~l---~~~~~~L~~L~Ls~~~i~~~~l~~ 362 (784)
+.++|++|+|+++..+++.++..++. ..+.|++|++++| .+++.+...+ +...+.++.++++++.++..++..
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 44899999999988899999887775 6788999999997 6677666554 455799999999999999999988
Q ss_pred hhccCCccCcccccccchhhhcCCCccEEEecCC-CCCCHHHHHHH---HHhCccccEEEecCCc
Q 003957 363 LCSEVPYCNSSALCGKRNFNTLASNLQMLHMACC-NGVDGMYLLEL---MCQARKLKSLCLSGTQ 423 (784)
Q Consensus 363 l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c-~~l~~~~l~~l---~~~~~~L~~L~Ls~~~ 423 (784)
++..+ ...++|+.++|..+ ..+++.+...+ ....++|+.|+++.+.
T Consensus 94 l~~~l---------------~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 94 LVEAL---------------QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHGG---------------GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHH---------------HhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 76444 66788998888755 35666554444 3467777777776553
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.15 E-value=1.4e-07 Score=89.62 Aligned_cols=126 Identities=14% Similarity=0.113 Sum_probs=89.5
Q ss_pred CCCeEecCCC-CccCHHHHHHHHHhCCCCCEEEeeCCCCCHHHHHHhhccCCccCcccccccchhhhcCCCccEEEecCC
Q 003957 318 SLGYINIKGC-VSVTDVCISNLIRRCVKLQSIIVCDTSFGVYSIRALCSEVPYCNSSALCGKRNFNTLASNLQMLHMACC 396 (784)
Q Consensus 318 ~L~~L~L~~c-~~l~~~~l~~l~~~~~~L~~L~Ls~~~i~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~c 396 (784)
.++.+++.+. ..+.. ++.-+..+++|+.|++++|.|+. ++. +..+++|+.|++++|
T Consensus 24 ~~~~~~l~~~~~~i~~--l~~sl~~L~~L~~L~Ls~n~I~~--------------------i~~-l~~l~~L~~L~Ls~N 80 (198)
T d1m9la_ 24 EAEKVELHGMIPPIEK--MDATLSTLKACKHLALSTNNIEK--------------------ISS-LSGMENLRILSLGRN 80 (198)
T ss_dssp TCSCEECCBCCTTCCC--CHHHHHHTTTCCEEECSEEEESC--------------------CCC-HHHHTTCCEEECCEE
T ss_pred ccceeeeecccCchhh--hhhHHhcccccceeECcccCCCC--------------------ccc-ccCCccccChhhccc
Confidence 4566666542 22321 22345678999999999998875 222 367889999999998
Q ss_pred CCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHhcCCCccEEeccCCC
Q 003957 397 NGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVHGNSGLKYLNARGCK 471 (784)
Q Consensus 397 ~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~~l~~L~~L~L~~c~ 471 (784)
..-+ ++.+...+++|+.|++++|.+++.. .+. .++|++|++++|.+++......+..+++|++|++++++
T Consensus 81 ~i~~---i~~~~~~~~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 81 LIKK---IENLDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EECS---CSSHHHHHHHCCEEECSEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred cccc---ccccccccccccccccccccccccc--cccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence 5421 2223345678999999999888643 233 58999999999998875443445789999999998874
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=1.6e-06 Score=78.56 Aligned_cols=108 Identities=17% Similarity=0.078 Sum_probs=76.6
Q ss_pred CCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHhhCCCCCCEEEcccCCCCCChhHHHHHHhcCCC
Q 003957 627 SELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAYGVTSLFNCIALEDLLLRHNGPGIPRDFILDAASKMPM 706 (784)
Q Consensus 627 ~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~~~~~l~~~~~L~~L~L~~n~~gl~~~~~~~~l~~l~~ 706 (784)
...+.++.+++...+. ... ..++++|+.|++.+++.++......|.++++|+.|++++|++ . ...+.++.++++
T Consensus 8 ~~~~~l~c~~~~~~~~--p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l--~-~i~~~~f~~l~~ 81 (156)
T d2ifga3 8 HGSSGLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL--R-FVAPDAFHFTPR 81 (156)
T ss_dssp SSSSCEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC--C-EECTTGGGSCSC
T ss_pred CCCCeEEecCCCCccC--ccc-ccCccccCeeecCCCccccccCchhhccccccCcceeecccc--C-Cccccccccccc
Confidence 3455666666555431 111 235678889998877767766666777899999999999966 4 444667888999
Q ss_pred CceeccccccccCCCCCccc-ccCCCCCCEEEecCCCCc
Q 003957 707 LRLVSLDLCDASDGNFEIPD-YADRYSLSTVKITKCKSK 744 (784)
Q Consensus 707 L~~L~L~~c~~~~~~~~l~~-~~~~~~L~~L~is~C~~~ 744 (784)
|++|+|++|... .+|. .-...+|+.|+|++++..
T Consensus 82 L~~L~Ls~N~l~----~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 82 LSRLNLSFNALE----SLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp CCEEECCSSCCS----CCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeccCCCCc----ccChhhhccccccccccCCCccc
Confidence 999999988776 4565 333457999999998753
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=3e-05 Score=69.92 Aligned_cols=89 Identities=19% Similarity=0.126 Sum_probs=63.2
Q ss_pred chhhhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhhhhcc-cCCcCEEEecCCccchhhHHHHHh
Q 003957 379 RNFNTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKALYNFS-GSSLEMLDVSDTMISGAALAYMVH 457 (784)
Q Consensus 379 ~~~~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-~~~L~~L~Ls~~~i~~~~l~~~~~ 457 (784)
|..+..+++|++|++++++.++......+ ..+++|+.|++++|.++.....+|. .++|++|+|++|.++......+
T Consensus 24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~-- 100 (156)
T d2ifga3 24 LHHLPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV-- 100 (156)
T ss_dssp TTTSCSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT--
T ss_pred cccccCccccCeeecCCCccccccCchhh-ccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhh--
Confidence 33445678899999987765543222222 6788999999999998888777776 5899999999998765333222
Q ss_pred cCCCccEEeccCC
Q 003957 458 GNSGLKYLNARGC 470 (784)
Q Consensus 458 ~l~~L~~L~L~~c 470 (784)
...+|++|++++.
T Consensus 101 ~~~~l~~L~L~~N 113 (156)
T d2ifga3 101 QGLSLQELVLSGN 113 (156)
T ss_dssp CSCCCCEEECCSS
T ss_pred ccccccccccCCC
Confidence 3357889998775
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.0001 Score=66.65 Aligned_cols=88 Identities=24% Similarity=0.301 Sum_probs=43.7
Q ss_pred HHhcCCCCcEEEecCCCCCChHHHHHHHhcCCCCcEEeecCCCCCCHH-HHHHhhCCCCCCEEEcccCCCCCC----hhH
Q 003957 622 LTQNCSELVELSLVGCTLLSSDSQLIISQGWPGLISLHLEECGDITAY-GVTSLFNCIALEDLLLRHNGPGIP----RDF 696 (784)
Q Consensus 622 l~~~~~~L~~L~Ls~c~~~~~~~~~~~~~~~~~L~~L~L~~c~~i~~~-~~~~l~~~~~L~~L~L~~n~~gl~----~~~ 696 (784)
+...+++|++|++++|.+..-.........+++|+.|++++|. |+.. .+..+ ....|+.|++++|++.-. ...
T Consensus 60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l-~~~~L~~L~L~~Npl~~~~~~~~~y 137 (162)
T d1koha1 60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKI-KGLKLEELWLDGNSLSDTFRDQSTY 137 (162)
T ss_dssp HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHH-TTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhh-hccccceeecCCCCcCcCcccchhH
Confidence 3445666666666666654422222223446666666666655 3332 22222 333566666666654100 012
Q ss_pred HHHHHhcCCCCceec
Q 003957 697 ILDAASKMPMLRLVS 711 (784)
Q Consensus 697 ~~~~l~~l~~L~~L~ 711 (784)
....+..+|+|+.|+
T Consensus 138 ~~~i~~~~P~L~~LD 152 (162)
T d1koha1 138 ISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHTTSTTCCEET
T ss_pred HHHHHHHCCCCCEEC
Confidence 233355666666664
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.00021 Score=64.57 Aligned_cols=85 Identities=20% Similarity=0.149 Sum_probs=63.6
Q ss_pred hhcCCCccEEEecCCCCCCHHHHHHHHHhCccccEEEecCCcCchhhh-hhcccCCcCEEEecCCccch------hhHHH
Q 003957 382 NTLASNLQMLHMACCNGVDGMYLLELMCQARKLKSLCLSGTQLADKAL-YNFSGSSLEMLDVSDTMISG------AALAY 454 (784)
Q Consensus 382 ~~~l~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~-~~l~~~~L~~L~Ls~~~i~~------~~l~~ 454 (784)
...+++|++|+|++|..-.-..+......+++|+.|++++|.+++... ..+....|+.|++++|.+.. .....
T Consensus 61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~ 140 (162)
T d1koha1 61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140 (162)
T ss_dssp HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence 356899999999998764323344445789999999999999887653 33335789999999997653 22345
Q ss_pred HHhcCCCccEEe
Q 003957 455 MVHGNSGLKYLN 466 (784)
Q Consensus 455 ~~~~l~~L~~L~ 466 (784)
+...+|+|+.|+
T Consensus 141 i~~~~P~L~~LD 152 (162)
T d1koha1 141 IRERFPKLLRLD 152 (162)
T ss_dssp HHTTSTTCCEET
T ss_pred HHHHCCCCCEEC
Confidence 677899999997
|