Citrus Sinensis ID: 003965
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 783 | 2.2.26 [Sep-21-2011] | |||||||
| Q8WU76 | 684 | Sec1 family domain-contai | yes | no | 0.802 | 0.918 | 0.208 | 7e-15 | |
| Q8BTY8 | 684 | Sec1 family domain-contai | yes | no | 0.395 | 0.453 | 0.242 | 3e-11 |
| >sp|Q8WU76|SCFD2_HUMAN Sec1 family domain-containing protein 2 OS=Homo sapiens GN=SCFD2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 83.2 bits (204), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 166/796 (20%), Positives = 309/796 (38%), Gaps = 168/796 (21%)
Query: 15 KQISEHIKDAILYLDSGCTESFQLIGAFPVLLELGVRAVCCLENMSPLDSVVDWNSNIDP 74
+Q+ +K A++YLD+ C ES LLE C L P D
Sbjct: 15 EQVLAKVKRAVVYLDAACAESLHWGCGSTRLLEAVGGPDCHLREFEP-----DAIGGGAK 69
Query: 75 MRKMVVMTSRLLSDAHRYIVRCLSASYGIRHCAIFTSISEIAHSAYTDSPLGPDAFHEYE 134
K V + S LL I+R + ++C + T++S H P A E +
Sbjct: 70 QPKAVFVLSCLLKGRTVEILRDIICRSHFQYCVVVTTVSHAVHLTANHVPAAAAAEMEGQ 129
Query: 135 TLLLQDYEELVRKRQTKSGQSEDTGFQKRLTFEDDGWSHLTSSEEDTSTFEASSSGKDFY 194
+ + EE + + W G Y
Sbjct: 130 QPVFEQLEEKLCE-----------------------W-----------------MGNMNY 149
Query: 195 KEDVGQELVVSVHHFPMILCPLSPRVFVLPSEGSVAEACLSVEH-EDSLSPVLPPIGTGL 253
+V H P++L P++P + P+ S+ H +S P +G+
Sbjct: 150 TAEV--------FHVPLLLAPVAPHFALTPAFASLFPLLPQDVHLLNSARPDKRKLGSLG 201
Query: 254 FSDGDDVPPGAILTAHLIY----HLASKMDLKMEIFSLGDLSKNVGKLLTDMSSLYDVGR 309
D + P +L + L + ++ E F++G LS+ + D+++
Sbjct: 202 DVDSTTLTPELLLQIRCLVSGLSSLCEHLGVREECFAVGSLSQVIA---ADLANYAPAKN 258
Query: 310 RKRTAG----LLLVDRTFDLLTPCC-HGDSLVDRMFSSLPRRKRTAFYAHIKGSQSRAKL 364
RK+TA ++ VDRT DL HGD+LV+++ S+LP+ + G + +
Sbjct: 259 RKKTAAGRASVVFVDRTLDLTGAVGHHGDNLVEKIISALPQ---------LPGHTNDVMV 309
Query: 365 GSSSVQRSPVEVQIPLAKILSEEDSKLDDSRLQGNIEAFLRGWDAYNSSSEVVDLSLSSE 424
I L + +EE++ YN + LS SS+
Sbjct: 310 N-----------MIALTALHTEEEN--------------------YNVVAPGC-LSQSSD 337
Query: 425 IELLSGSFVSTENFRGTPYMEALLDRRMKDGTVLIKKWLQEALRQENLTVNVRSRPGSAT 484
+ + E T + EA+++ +++ L EA +ENL + + G T
Sbjct: 338 ----TTAKALWEALLNTKHKEAVME---------VRRHLVEAASRENLPIKMSM--GRVT 382
Query: 485 KSELQAMIKALAKNQSSLVRNRGIIQFATAALAALDESHSARWDAFISAEKMLHVSAEDT 544
+L + I+ N +L+ + G++Q A L +A+WD F++ E++L S ++
Sbjct: 383 PGQLMSYIQLFKNNLKALMNHCGLLQLGLATAQTLKHPQTAKWDNFLAFERLLLQSIGES 442
Query: 545 SQSLAAQIGDLINKSCLVGSHDQKTRKMELSSRLLSFKDALLLTVTGYILAGENFPTSGS 604
+ S+ + L+ ++ Q+T + + S L + +VTG + ++
Sbjct: 443 AMSVV--LNQLLP---MIKPVTQRTNE-DYSPEELLILLIYIYSVTGELTVDKDL----- 491
Query: 605 GGPFSWQEEHFLKEAIVDAIFENPSEAKFKFLHEQQYNDMQLKLEL-----QDRVDNLFK 659
+ E +K+A+ E + Q+ D + L + VD LF
Sbjct: 492 -----CEAEEKVKKALAQVFCEESGLSPLL----QKITDWDSSINLTFHKSKIAVDELFT 542
Query: 660 FLHKVSGLKRKNIPLRDSAFGSDSHFHGDSYASKGLLYKLLMKVL--AKSDVPGLEYHSS 717
L ++G R + S + +H H SY K LL +++ ++ + D +E+ SS
Sbjct: 543 SLRDIAG-ARSLLKQFKSVYVPGNHTHQASY--KPLLKQVVEEIFHPERPDSVDIEHMSS 599
Query: 718 ---------------TAKPSLADQNVILIFVIGGINGLEVHEALEALSESGRPDLELILG 762
++P +D ++++FV+GG+ EV + ++ L S +P ++I+
Sbjct: 600 GLTDLLKTGFSMFMKVSRPHPSDYPLLILFVVGGVTVSEV-KMVKDLVASLKPGTQVIVL 658
Query: 763 GTTLLTPADMFDLLLG 778
T LL P ++ +LL
Sbjct: 659 STRLLKPLNIPELLFA 674
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May be involved in protein transport. Homo sapiens (taxid: 9606) |
| >sp|Q8BTY8|SCFD2_MOUSE Sec1 family domain-containing protein 2 OS=Mus musculus GN=Scfd2 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 783 | ||||||
| 302143436 | 817 | unnamed protein product [Vitis vinifera] | 1.0 | 0.958 | 0.703 | 0.0 | |
| 225446635 | 869 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.901 | 0.660 | 0.0 | |
| 255562216 | 836 | conserved hypothetical protein [Ricinus | 0.979 | 0.917 | 0.647 | 0.0 | |
| 356543092 | 848 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.905 | 0.644 | 0.0 | |
| 449435538 | 856 | PREDICTED: uncharacterized protein LOC10 | 0.987 | 0.903 | 0.620 | 0.0 | |
| 356517330 | 849 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.904 | 0.638 | 0.0 | |
| 449488524 | 843 | PREDICTED: uncharacterized LOC101211807 | 0.970 | 0.901 | 0.615 | 0.0 | |
| 224128756 | 806 | predicted protein [Populus trichocarpa] | 0.925 | 0.899 | 0.606 | 0.0 | |
| 357474635 | 860 | hypothetical protein MTR_4g080110 [Medic | 0.973 | 0.886 | 0.598 | 0.0 | |
| 186507531 | 838 | uncharacterized protein [Arabidopsis tha | 0.971 | 0.908 | 0.576 | 0.0 |
| >gi|302143436|emb|CBI21997.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1161 bits (3004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/817 (70%), Positives = 656/817 (80%), Gaps = 34/817 (4%)
Query: 1 MALLDVTKSCIDSIKQISEHIKDAILYLDSGCTESFQLIGAFPVLLELGVRAVCCLENMS 60
MAL+DV KSC+DSI QIS+HI+ A LYLD GCTESFQ +GAFP+LL+LGVRAVC LENMS
Sbjct: 1 MALVDVIKSCLDSINQISDHIEGATLYLDGGCTESFQFLGAFPLLLQLGVRAVCSLENMS 60
Query: 61 PLDSVVDWNSNIDPMRKMVVMTSRLLSDAHRYIVRCLSASYGIRHCAIFTSISEIAHSAY 120
PLD+VVDW N DP+RK+VV+TSRLLSDAHRYI+RCLS G+RHC IFTSISEIAHSAY
Sbjct: 61 PLDTVVDWKPNFDPVRKIVVITSRLLSDAHRYILRCLSTHQGVRHCTIFTSISEIAHSAY 120
Query: 121 TDSPLGPDAFHEYETLLLQDYEELVRKRQTKSGQSEDTGFQKRLTFEDDGWSHLTSSEED 180
DSPLGPDAFHEYE+LL+ DYEELV+K +TKS QS DT + LT ED+GWS L EE
Sbjct: 121 PDSPLGPDAFHEYESLLVLDYEELVKKCETKSRQSGDTSLLENLTLEDEGWSQLGPIEES 180
Query: 181 TSTFEASSSGKDFYK-------EDVGQELVVSVHHFPMILCPLSPRVFVLPSEGSVAEAC 233
S EA S +D Y+ EDVGQ+LVVSVHHFPMILCP SPRVF+LPSEG++AEA
Sbjct: 181 ISQIEARPSPRDLYQDNSVGRTEDVGQKLVVSVHHFPMILCPFSPRVFILPSEGAIAEAY 240
Query: 234 LSVEHEDSLSPVLPPIGTGLFSDGDDVPPGAILTAHLIYHLASKMDLKMEIFSLGDLSKN 293
LS EHEDSLSP LPP+ TGL DGDD+PPGA LTAH +YHL +KMDLKMEIFS G+LSK
Sbjct: 241 LSTEHEDSLSPGLPPLSTGLPPDGDDIPPGATLTAHFLYHLTTKMDLKMEIFSFGNLSKT 300
Query: 294 VGKLLTDMSSLYDVGRRKRTAGLLLVDRTFDLLTPCCHGDSLVDRMFSSLPRRKRTAFYA 353
VGK+LTDMSSLYDVGRRKR+AGLLL+DRT DL TPCCHGDSLVDR+FSSLPRR+RT
Sbjct: 301 VGKILTDMSSLYDVGRRKRSAGLLLIDRTLDLHTPCCHGDSLVDRIFSSLPRRERTTSST 360
Query: 354 HIKGSQSRAKLGSSSVQRSPVEVQIPLAKILSEEDSKLDDSRLQGNIEAFLRGWDAYNSS 413
HIKGSQ++ K ++ R P++VQIPL KIL EEDS D+ RL +IEAFL GW++ +S
Sbjct: 361 HIKGSQTQPKHRYGNLHRRPLDVQIPLGKILCEEDSTRDNFRLLESIEAFLCGWNSGSSD 420
Query: 414 SEVVDL-----------SLSSEIELLSGSFVSTENFRGTPYMEALLDRRMKDGTVLIKKW 462
+++VDL S SEIELLSGSFV+ ENF GTPY+E +LDRRMKDGT+L+KKW
Sbjct: 421 AQIVDLVNLSAKLHSEKSPQSEIELLSGSFVAMENFHGTPYLETILDRRMKDGTILVKKW 480
Query: 463 LQEALRQENLTVNVRSRPGSATKSELQAMIKALAKNQSSLVRNRGIIQFATAALAALDES 522
LQE LR+E +T+NV+ RPG ATKS+LQ MIKAL K+QS L+RN+GIIQ A A L LDE
Sbjct: 481 LQETLRREKMTLNVKMRPGFATKSDLQPMIKALTKSQSCLLRNKGIIQLAAATLFTLDEL 540
Query: 523 HSARWDAFISAEKMLHVSAEDTSQSLAAQIGDLINKSCLVGSHDQKTRKMELSSRLLSFK 582
HS+RWD F SAEK+L VSA DTSQSLAAQIGDLINKS LVGSH+QK KME S LLSF+
Sbjct: 541 HSSRWDVFTSAEKILSVSAGDTSQSLAAQIGDLINKSVLVGSHEQKNGKMEPSEGLLSFQ 600
Query: 583 DALLLTVTGYILAGENFPTSGSGGPFSWQEEHFLKEAIVDAIFENPSEAKFKFLHEQQYN 642
DALLLT+TGYILAGENFPTSGSGGPFSWQEEH LKEAIVDA+ ENP+ AK KFL Y
Sbjct: 601 DALLLTITGYILAGENFPTSGSGGPFSWQEEHLLKEAIVDAVLENPAIAKLKFLDGHVYG 660
Query: 643 DMQLKLELQDRVDNLFKFLHKVSGLKRKNIPLRDSAFGSDSHFHGDSYASKGLLYKLLMK 702
DMQLKLEL+DRVDNLFK LHK+S LKR+NIPLR+ D+ F GD SKGLLYKLL +
Sbjct: 661 DMQLKLELRDRVDNLFKVLHKLSSLKRRNIPLREGPLALDNDFSGDPSTSKGLLYKLLTR 720
Query: 703 VLAKSDVPGLEYHSST----------------AKPSLADQNVILIFVIGGINGLEVHEAL 746
VL K +VPGL+YHSST AKPSLADQNVIL+FVIGGINGLEV EA
Sbjct: 721 VLGKYEVPGLDYHSSTVGRLFKSGFGRFGLGQAKPSLADQNVILVFVIGGINGLEVREAQ 780
Query: 747 EALSESGRPDLELILGGTTLLTPADMFDLLLGDSSYI 783
EALSESGRPD+ELI+GGTTLLTP DM DLLLG+SSYI
Sbjct: 781 EALSESGRPDIELIIGGTTLLTPDDMLDLLLGNSSYI 817
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446635|ref|XP_002281104.1| PREDICTED: uncharacterized protein LOC100262654 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255562216|ref|XP_002522116.1| conserved hypothetical protein [Ricinus communis] gi|223538715|gb|EEF40316.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356543092|ref|XP_003539997.1| PREDICTED: uncharacterized protein LOC100808775 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449435538|ref|XP_004135552.1| PREDICTED: uncharacterized protein LOC101211807 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356517330|ref|XP_003527341.1| PREDICTED: uncharacterized protein LOC100804041 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449488524|ref|XP_004158069.1| PREDICTED: uncharacterized LOC101211807 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224128756|ref|XP_002320414.1| predicted protein [Populus trichocarpa] gi|222861187|gb|EEE98729.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357474635|ref|XP_003607602.1| hypothetical protein MTR_4g080110 [Medicago truncatula] gi|355508657|gb|AES89799.1| hypothetical protein MTR_4g080110 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|186507531|ref|NP_181798.2| uncharacterized protein [Arabidopsis thaliana] gi|330255063|gb|AEC10157.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 783 | ||||||
| UNIPROTKB|E2RJT8 | 683 | SCFD2 "Uncharacterized protein | 0.395 | 0.453 | 0.22 | 3.3e-20 | |
| UNIPROTKB|Q8WU76 | 684 | SCFD2 "Sec1 family domain-cont | 0.398 | 0.456 | 0.209 | 3.4e-19 | |
| UNIPROTKB|A0JN38 | 684 | SCFD2 "Uncharacterized protein | 0.395 | 0.453 | 0.22 | 5.5e-18 | |
| MGI|MGI:2443446 | 684 | Scfd2 "Sec1 family domain cont | 0.393 | 0.450 | 0.227 | 1.1e-17 | |
| RGD|1562708 | 684 | Scfd2 "sec1 family domain cont | 0.394 | 0.451 | 0.219 | 2.2e-17 | |
| ZFIN|ZDB-GENE-050320-143 | 681 | scfd2 "sec1 family domain cont | 0.397 | 0.456 | 0.214 | 7e-16 | |
| UNIPROTKB|F1SE65 | 547 | SCFD2 "Uncharacterized protein | 0.144 | 0.206 | 0.275 | 2.9e-15 | |
| UNIPROTKB|F1NVY6 | 350 | SCFD2 "Uncharacterized protein | 0.210 | 0.471 | 0.248 | 2e-08 | |
| DICTYBASE|DDB_G0277343 | 904 | scfd2 "Sec1-like family protei | 0.077 | 0.067 | 0.269 | 9.3e-06 |
| UNIPROTKB|E2RJT8 SCFD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Score = 166 (63.5 bits), Expect = 3.3e-20, Sum P(3) = 3.3e-20
Identities = 77/350 (22%), Positives = 156/350 (44%)
Query: 445 EALLDRRMKDGTVLIKKWLQEALRQENLTVNVRSRPGSATKSELQAMIKALAKNQSSLVR 504
EALL + K+ + +++ L EA +ENL + + G T +L + I+ N ++V
Sbjct: 344 EALLSTKHKEAVMEVRRHLVEAASRENLPIKMSM--GRVTPGQLMSYIQLFKNNLKAIVN 401
Query: 505 NRGIIQFATAALAALDESHSARWDAFISAEKMLHVSAEDTSQSLAAQIGDLINKSCLVGS 564
+ G++Q A + L +A+WD F++ E++L S +++ S+ + L+ ++
Sbjct: 402 HCGLLQLGLATVQTLKHPQTAKWDNFLAFERLLLQSIGESTMSVV--LNQLLP---MIKP 456
Query: 565 HDQKTRKMELSSRLLSFKDALLLTVTGYILAGENFPTSGSGGPFSWQEEHFLKEAIVDAI 624
+Q+T K + S ++ L+L + Y ++GE F G + + +KEA+
Sbjct: 457 LNQRT-KDDYSP-----EELLILLIYVYSVSGE-FTVDKDLG----EADEKVKEALARVF 505
Query: 625 FENPSEAKFKFLHEQQYNDMQLKLELQD-RVDNLFKFLHKVSGLKRKNIPLRDSAFGSDS 683
E + + ++L VD LF L ++G + + S + +
Sbjct: 506 CEESELSPLLQKITGCDSSIKLTFHKSKIAVDELFASLRDIAGARNLMKQFK-SVYVPGN 564
Query: 684 HFHGDSYAS--KGLLYKLLMKVLAKSDVPGLEYHSS---------------TAKPSLADQ 726
H H SY K ++ ++ + D +E+ SS ++P +D
Sbjct: 565 HTHQASYKPLLKQVVEEIFNP--ERPDPVDIEHMSSGLTDLLKTGFSMFMKVSRPHPSDH 622
Query: 727 NVILIFVIGGINGLEVHEALEALSESGRPDLELIXXXXXXXXPADMFDLL 776
++++FV+GG+ E + L+ L S +P ++I P ++ +LL
Sbjct: 623 PLLILFVVGGVTVSEA-KMLKDLVPSLKPGTQVIVLSTRLLKPLNIPELL 671
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| UNIPROTKB|Q8WU76 SCFD2 "Sec1 family domain-containing protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A0JN38 SCFD2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| MGI|MGI:2443446 Scfd2 "Sec1 family domain containing 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1562708 Scfd2 "sec1 family domain containing 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-050320-143 scfd2 "sec1 family domain containing 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SE65 SCFD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NVY6 SCFD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0277343 scfd2 "Sec1-like family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 783 | |||
| KOG1300 | 593 | consensus Vesicle trafficking protein Sec1 [Intrac | 100.0 | |
| PF00995 | 564 | Sec1: Sec1 family; InterPro: IPR001619 Sec1-like m | 100.0 | |
| KOG1299 | 549 | consensus Vacuolar sorting protein VPS45/Stt10 (Se | 100.0 | |
| COG5158 | 582 | SEC1 Proteins involved in synaptic transmission an | 99.94 | |
| KOG1302 | 600 | consensus Vacuolar sorting protein VPS33/slp1 (Sec | 99.94 | |
| KOG1301 | 621 | consensus Vesicle trafficking protein Sly1 (Sec1 f | 99.51 | |
| KOG3062 | 281 | consensus RNA polymerase II elongator associated p | 83.09 |
| >KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=371.83 Aligned_cols=519 Identities=16% Similarity=0.206 Sum_probs=343.6
Q ss_pred HhhccEEEecCcchhhhhhcCCHHHHHhhccccccccccC-CCccccccccCCCCCCceEEEEEccccchhHHHHHHHH-
Q 003965 20 HIKDAILYLDSGCTESFQLIGAFPVLLELGVRAVCCLENM-SPLDSVVDWNSNIDPMRKMVVMTSRLLSDAHRYIVRCL- 97 (783)
Q Consensus 20 ~v~gavvylD~g~~E~l~w~gg~~~Lle~Ga~~V~~L~~~-s~~d~~~~~~~~~~~~~k~V~i~s~lL~~~~~~ilr~l- 97 (783)
+=+..|+-+|.-++=-+-..+-..-+++=|+..|=.+..- .|..+ =.++-|++.-= ..-..++++.
T Consensus 21 ~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~S-----------meaIY~i~pt~-~~V~~~i~Df~ 88 (593)
T KOG1300|consen 21 KGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPS-----------MEAIYFITPTE-ESVDCLIKDFE 88 (593)
T ss_pred CCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCc-----------ceeEEEecCch-hhHHHHHHhhc
Confidence 3356789999999888888888888889998877665221 11111 12333333221 1113344444
Q ss_pred HhcCCccEEEEEeecChhhhcccCCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCCcccccccccccCCCccccCCC
Q 003965 98 SASYGIRHCAIFTSISEIAHSAYTDSPLGPDAFHEYETLLLQDYEELVRKRQTKSGQSEDTGFQKRLTFEDDGWSHLTSS 177 (783)
Q Consensus 98 ~~~~~~~~c~V~tsvSe~aH~~~~~~~l~~~a~~e~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 177 (783)
-.++-...|.||..-. .. ..+|+.+... +. .+|.
T Consensus 89 ~~~~~Y~~ahifF~~~---------------c~----~~lf~~l~ks-~~------------------------a~~i-- 122 (593)
T KOG1300|consen 89 GRSPLYKAAHIFFLDP---------------CP----DPLFNKLSKS-RA------------------------AKKI-- 122 (593)
T ss_pred ccCcccceEEEEEcCC---------------CC----HHHHHHHHhh-hH------------------------hhhh--
Confidence 3355566676665541 00 1245555421 11 0111
Q ss_pred CCcccccccCCCCccccccccCCcceEEEEeeceeeccCCCCeecccCCchhhhhhcccccccCCCCCCCCCCCCCCCCC
Q 003965 178 EEDTSTFEASSSGKDFYKEDVGQELVVSVHHFPMILCPLSPRVFVLPSEGSVAEACLSVEHEDSLSPVLPPIGTGLFSDG 257 (783)
Q Consensus 178 ~~~~~~~~~~~s~~~~~~~~~~~~~~v~V~~~Pl~~~pl~~~lf~lp~~~s~~~~~l~~~~~~sl~p~lPp~~~g~~~d~ 257 (783)
-++...=+-|.|.+.++|+++..+++..+|..+.+
T Consensus 123 --------------------------~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~~a------------------- 157 (593)
T KOG1300|consen 123 --------------------------KTLKEINLAFIPYESQVFTLDSPDAFLQLYSPDNA------------------- 157 (593)
T ss_pred --------------------------hhheecccccceecceeeeecChhhHHHhcCchhh-------------------
Confidence 34556667889999999999999998776654311
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCcceeeecCchhHHHHHHHhhhhhhhh-c--------c--ccCCceeEEEEecccccc
Q 003965 258 DDVPPGAILTAHLIYHLASKMDLKMEIFSLGDLSKNVGKLLTDMSSLYD-V--------G--RRKRTAGLLLVDRTFDLL 326 (783)
Q Consensus 258 d~lp~~~~lla~~L~~L~~~l~l~~~if~~G~~Sr~Ia~~l~~m~~~~~-a--------~--~~k~~asLIlVDRtlDl~ 326 (783)
...+..+..+|+.+.++|..+|--|-+...|++++-.+.+-..+++-.. + + ..+...-|||+||++|.+
T Consensus 158 ~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~as~l~~~va~~l~~~~~~~~~~~~~~p~~~~seLlIlDRs~D~i 237 (593)
T KOG1300|consen 158 AIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNASELAQKVAAKLWDAYKAYKPSIGNGPQKTRSELLILDRSFDPV 237 (593)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCHHHHHHHHHHHHHHHHHhcccccCCCCCcccceEEEEecccccc
Confidence 1124567779999999999999999888888887765432222333111 0 1 124456799999999999
Q ss_pred cCCCC---CCchHHHHhhcCCCCCCccccccccCCccccccCCCCcCCCCceeeeeccccccccccccccccccchhhhh
Q 003965 327 TPCCH---GDSLVDRMFSSLPRRKRTAFYAHIKGSQSRAKLGSSSVQRSPVEVQIPLAKILSEEDSKLDDSRLQGNIEAF 403 (783)
Q Consensus 327 tp~~h---~e~LlDri~~~Lpr~~~~~~~~~~~~~~~~~~~~~~~~~r~~~dV~v~m~~l~~~~~~~~~~~~~~~~~~~~ 403 (783)
+|+.| |+-..--.+.+ .+- +|....
T Consensus 238 aPlLHE~TyqAM~~DLl~i----end----------------------------------------~Y~ye~-------- 265 (593)
T KOG1300|consen 238 APLLHEFTYQAMAYDLLPI----END----------------------------------------VYRYET-------- 265 (593)
T ss_pred chHHHHHHHHHHHHHHHhh----cCC----------------------------------------EEEEec--------
Confidence 99974 33322222221 111 111100
Q ss_pred hccccccCCCcchhcccccccccccCCcccccCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCCcccccCCCCC
Q 003965 404 LRGWDAYNSSSEVVDLSLSSEIELLSGSFVSTENFRGTPYMEALLDRRMKDGTVLIKKWLQEALRQENLTVNVRSRPGSA 483 (783)
Q Consensus 404 ~~g~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~lweaLl~k~~kd~~~~V~k~L~Ea~~~E~l~~~ik~~~G~v 483 (783)
.| ++++.+-+ + |.--+| ++|..|+|+|++||...|++.+++|+++++.-. .+ ....
T Consensus 266 -~g-~~g~~kk~---------v------llde~D----~~WveLRH~HIadvse~l~~~~k~f~~~nk~~~-~~--~k~~ 321 (593)
T KOG1300|consen 266 -PG-KSGEKKKE---------V------LLDEDD----DLWVELRHKHIADVSERLTKKMKNFSSKNKRLQ-TK--SKET 321 (593)
T ss_pred -CC-CCCCccce---------e------ecccCC----cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-cc--cccc
Confidence 00 01111000 0 111223 799999999999999999999999999775321 11 1137
Q ss_pred CHHHHHHHHHHHhhCHHHHHhhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHH-hhhcccchHh---HHHHHHHhhccC
Q 003965 484 TKSELQAMIKALAKNQSSLVRNRGIIQFATAALAALDESHSARWDAFISAEKML-HVSAEDTSQS---LAAQIGDLINKS 559 (783)
Q Consensus 484 T~~eL~~lik~l~~~~~~l~kh~g~LQLa~A~~qaL~~~~~s~wd~l~s~Eq~L-~~s~~dgs~s---~~~ql~~lI~~~ 559 (783)
+..+|++||++||++++++.|++.|+.||..||..++ ...++||++||+| .+++.+|... +..+++.++...
T Consensus 322 S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~----~~L~~l~~iEQDLa~G~Daeg~kik~~~~~~~p~l~~~~ 397 (593)
T KOG1300|consen 322 STKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQ----EGLEKLGAIEQDLATGTDAEGEKIKDSLRDLLPILLESN 397 (593)
T ss_pred chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCCcccccHHHHHHhhhhhhcccC
Confidence 9999999999999999999999999999999999977 4899999999999 7778888873 445566666654
Q ss_pred ccCCCCccchhhhhhcccCCCHHHHHHHHhhhhhccCcCCCCCCCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhh
Q 003965 560 CLVGSHDQKTRKMELSSRLLSFKDALLLTVTGYILAGENFPTSGSGGPFSWQEEHFLKEAIVDAIFENPSEAKFKFLHEQ 639 (783)
Q Consensus 560 ~s~~~~~~~~~~~~~~~~~ls~ddiL~Lll~iyslaGe~~~~~~~~~~fs~~~E~~L~kaL~~ail~~~~~~~l~~l~~~ 639 (783)
. --++++++|++|++.-+|.. |++|.|+++|+.+..... +++
T Consensus 398 ~------------------~~~dklR~Illy~~~~~Gi~--------------ee~l~kL~~~~~i~~~~~---~ii--- 439 (593)
T KOG1300|consen 398 V------------------RLLDKLRLILLYIFERKGII--------------EENLAKLLQHAGISVEEM---QII--- 439 (593)
T ss_pred c------------------hHHHHHHHHHHHHHhcCCcc--------------HHHHHHHhcccCCCchHH---HHH---
Confidence 4 35688888888888877776 899999999985543221 112
Q ss_pred hchhchhhhhHhhhhhhHHhhhhhhhhccccccCCCCCCCCCCCcccccCccccccHHHHHHHHh-cCCCCCCCCCCCCC
Q 003965 640 QYNDMQLKLELQDRVDNLFKFLHKVSGLKRKNIPLRDSAFGSDSHFHGDSYASKGLLYKLLMKVL-AKSDVPGLEYHSST 718 (783)
Q Consensus 640 ~~~~~~L~~e~~~r~~~lf~~l~~~s~~r~~~k~lr~~~~~~~n~y~q~~~rh~PlL~~~le~l~-~k~d~p~~~~~s~~ 718 (783)
.+..++... . +.+ +...+...+.|+.|. .|++|+ ++||+|.|++|||+++ +++|..+||+.+.+
T Consensus 440 -~~~~~~~~~--~-~~~--------~~~~k~~~~~rker~-~e~tyq--lSR~~P~Ik~ilE~~i~~~Ld~~~fp~~~~~ 504 (593)
T KOG1300|consen 440 -QNLHILGVP--V-TKD--------SFLLKFDPPERKERV-EEQTYQ--LSRWVPVIKNILEKLIEDRLDKKHFPYLNDT 504 (593)
T ss_pred -hhHHHhCCc--c-ccC--------cccccCCCCcccccc-ccceee--eeeeehHHHHHHHHHHhccCChhhCccccCC
Confidence 111122221 0 000 122222333455555 578885 7999999999999999 78877777765432
Q ss_pred -----------CCC-------Cc----CCCCeEEEEEECCcCHHHHHHHHHHhhccCCCCcEEEEccccccChhHHHHHh
Q 003965 719 -----------AKP-------SL----ADQNVILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPADMFDLL 776 (783)
Q Consensus 719 -----------~~~-------~p----~d~~~iIVFVVGGvTyeE~R~v~e~~~~s~~~~~~VilGgT~ilnp~~fl~~l 776 (783)
+|+ .| ..++++||||||||||+|+|++||+.+ ..+|+||||||+|+||++||++|
T Consensus 505 s~~~~~~~~~Sar~~~~~~~k~~~~~~~~g~ri~VfIiGGvT~SEmRvaYevs~---~~~~EViiGS~~iltP~~fL~~l 581 (593)
T KOG1300|consen 505 SETSSGSAATSARYGHPLSNKTPSAFKKPGQRIIVFIIGGVTFSEMRVAYEVSE---KLNREVIIGSDHILTPTKFLDDL 581 (593)
T ss_pred ccccccCccccccccCcccccCcchhhccCceEEEEEeCCccHHHHHHHHHHHH---hhCceEEECCcccCCHHHHHHHH
Confidence 111 12 147899999999999999999999954 34599999999999999999988
Q ss_pred h
Q 003965 777 L 777 (783)
Q Consensus 777 ~ 777 (783)
-
T Consensus 582 k 582 (593)
T KOG1300|consen 582 K 582 (593)
T ss_pred h
Confidence 5
|
|
| >PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis [] | Back alignment and domain information |
|---|
| >KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 4e-09
Identities = 92/719 (12%), Positives = 199/719 (27%), Gaps = 239/719 (33%)
Query: 117 HSAYTDSPLGPDAFHEYETLLLQDYEELVRKRQTKSGQSEDTGFQKRLTFED--DGWSHL 174
H + D G + ++Y+ +L +E+ F +D D +
Sbjct: 3 HHHHMDFETG-EHQYQYKDIL-SVFED---------------AFVDNFDCKDVQDMPKSI 45
Query: 175 TSSEEDTSTFEASSSGKDFYK---------EDVGQELVVSVHH--FPMILCPLSPRVFVL 223
S EE + + + E++ Q+ V V + ++ P+
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE---- 101
Query: 224 PSEGSVAEACLSVEHEDSLSPVLPPIGTGLFSDGDDVPPGAILTAHLIYHLASKMDLKME 283
+ ++ + + L++D + + L+
Sbjct: 102 ----QRQPSMMTRMYIEQRDR--------LYNDNQVFAKYNVSRLQPY------LKLRQA 143
Query: 284 IFSLGDLSKNV--------GKLLTDMSSLYDVGRRKRTAGLLLVDRTFDLLTP------- 328
+ L +KNV GK + + A + +
Sbjct: 144 LLELRP-AKNVLIDGVLGSGK-----TWV---------ALDVCLSYKVQCKMDFKIFWLN 188
Query: 329 --CCHGDSLVDRMFSSLPRRKRTAFYAHIKGSQSRAKLGSSSVQRSPVEVQIPLAKILSE 386
C+ V M L I + + SS+++ +Q L ++L
Sbjct: 189 LKNCNSPETVLEMLQKL--------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 387 EDSK-----LDDSRLQGNIEAFLRGWDAYNSSSEVV----DLSLSSEIELLSGSFVSTEN 437
+ + L + + N +A W+A+N S +++ ++ + + + +S ++
Sbjct: 241 KPYENCLLVLLNVQ---NAKA----WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 438 FRGTPYMEALLDRRMKDGTVLIKKWLQ---EALRQENLTVNVRSRPGSATKSELQAMIKA 494
T + + L+ K+L + L +E LT N P
Sbjct: 294 HSMTLTPDEVKS--------LLLKYLDCRPQDLPREVLTTN----P-------------- 327
Query: 495 LAKNQSSLVRNRGIIQFATAALAALDESHSARWDAFISAEKMLHVSAEDTSQSLAAQIGD 554
+ +A A WD + HV+ + + + + +
Sbjct: 328 ----------------RRLSIIAESIRDGLATWDNW------KHVNCDKLTTIIESSLNV 365
Query: 555 LINKSCLVGSHDQKTRKMELSSRLLSF-KDALLLTVTGYILAGENFPTSGSGGPFSWQEE 613
L + + LS F A + T+ ++ W +
Sbjct: 366 L-------EPAEYRKMFDRLS----VFPPSAHIPTILLSLI---------------WFDV 399
Query: 614 HFLKEAIVDAIFENPSEAKFKFLHEQQYNDMQLKLELQDRVDNLFKFLHKVSGLKRKNIP 673
+V S + K E + + LEL+ +++N + LH+ S + NIP
Sbjct: 400 IKSDVMVVVNKLHKYSLVE-KQPKESTISIPSIYLELKVKLENEYA-LHR-SIVDHYNIP 456
Query: 674 LRDSAFGSDSHFHGDSYASKGLLYKLLMKVLAKSDVPGLEYHSSTAKPSLADQNVILIFV 733
+ + D Y Y + +H + ++F+
Sbjct: 457 -KTFDSDDLIPPYLDQY-----FYSHIG------------HHLKNIEHPERMTLFRMVFL 498
Query: 734 IGGINGLEVHEALEALSESGRPDLE-----LILGGTTLLTPADMFDLLLGD----SSYI 783
D + T + + L YI
Sbjct: 499 ----------------------DFRFLEQKIRHDSTAWNASGSILNTLQ-QLKFYKPYI 534
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 783 | |||
| 1dn1_A | 594 | NSEC1, syntaxin binding protein 1; protein-protein | 100.0 | |
| 3puk_A | 592 | Syntaxin-binding protein 3; membrane trafficking, | 100.0 | |
| 2xhe_A | 650 | UNC18; exocytosis, exocytosis complex, snare, neur | 100.0 | |
| 3c98_A | 606 | Syntaxin-binding protein 1; protein complex, alter | 100.0 | |
| 1epu_A | 591 | S-SEC1; parallel beta-sheets, LEFT-hand turn conne | 100.0 | |
| 1mqs_A | 671 | SLY1 protein, SLY1P; SM-protein, snare, syntaxin, | 100.0 |
| >1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-42 Score=395.56 Aligned_cols=517 Identities=17% Similarity=0.227 Sum_probs=336.6
Q ss_pred ccEEEecCcchhhhhhcCCHHHHHhhccccccccccCCCccccccccCCCCCCceEEEEEccccchhHHHHHHHHHh--c
Q 003965 23 DAILYLDSGCTESFQLIGAFPVLLELGVRAVCCLENMSPLDSVVDWNSNIDPMRKMVVMTSRLLSDAHRYIVRCLSA--S 100 (783)
Q Consensus 23 gavvylD~g~~E~l~w~gg~~~Lle~Ga~~V~~L~~~s~~d~~~~~~~~~~~~~k~V~i~s~lL~~~~~~ilr~l~~--~ 100 (783)
.=|+-+|.-+.-.+--.....-|++.|+--|-.|+. -+. .-+.-++|+|++-.. ..-..|++++.. .
T Consensus 28 ~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~---~R~-------~~~~~~aIYfv~Pt~-~ni~~i~~d~~~~~~ 96 (594)
T 1dn1_A 28 WKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINK---RRE-------PLPSLEAVYLITPSE-KSVHSLISDFKDPPT 96 (594)
T ss_dssp CEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTS---CCC-------CCTTSEEEEEECCCH-HHHHHHHHTTSSGGG
T ss_pred CEEEEECcccHHHHHHHhCHHHHhhCCeEEEEeccc---ccC-------CCCCCceEEEEeCCH-HHHHHHHHHHhcccc
Confidence 348999999999999999999999999987777742 111 112347888887542 333555566642 1
Q ss_pred CCc-cEEEEEeecChhhhcccCCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCCcccccccccccCCCccccCCCCC
Q 003965 101 YGI-RHCAIFTSISEIAHSAYTDSPLGPDAFHEYETLLLQDYEELVRKRQTKSGQSEDTGFQKRLTFEDDGWSHLTSSEE 179 (783)
Q Consensus 101 ~~~-~~c~V~tsvSe~aH~~~~~~~l~~~a~~e~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 179 (783)
+.. .|-++||+. + + + +.+|++ ++.. .
T Consensus 97 ~~Y~~y~i~Ft~~------------~-~---~-------~~le~L-a~~~---------------------~-------- 123 (594)
T 1dn1_A 97 AKYRAAHVFFTDS------------C-P---D-------ALFNEL-VKSR---------------------A-------- 123 (594)
T ss_dssp CCCSEEEEEESSC------------C-C---H-------HHHHHH-HHSG---------------------G--------
T ss_pred cccceEEEEeCCC------------C-C---H-------HHHHHH-Hhcc---------------------h--------
Confidence 233 335555553 0 1 1 123333 1110 0
Q ss_pred cccccccCCCCccccccccCCcceEEEEeeceeeccCCCCeecccCCchhhhhhcccccccCCCCCCCCCCCCCCCCCCC
Q 003965 180 DTSTFEASSSGKDFYKEDVGQELVVSVHHFPMILCPLSPRVFVLPSEGSVAEACLSVEHEDSLSPVLPPIGTGLFSDGDD 259 (783)
Q Consensus 180 ~~~~~~~~~s~~~~~~~~~~~~~~v~V~~~Pl~~~pl~~~lf~lp~~~s~~~~~l~~~~~~sl~p~lPp~~~g~~~d~d~ 259 (783)
.....+|.++++.|.|+++++|++....++..+|.... .+.
T Consensus 124 --------------------~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~~~-----------------~~~-- 164 (594)
T 1dn1_A 124 --------------------AKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHK-----------------AQM-- 164 (594)
T ss_dssp --------------------GGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCGGG-----------------TTS--
T ss_pred --------------------HhhhcchheeeeeeEEccCCEEEecCcchHHHHhCCcc-----------------ccc--
Confidence 01235899999999999999999999887766654321 011
Q ss_pred CCCchHHHHHHHHHHHHhcCCcceeeecCch--hHHHHHHHh-hhhhhhh----cc--ccCCceeEEEEecccccccCCC
Q 003965 260 VPPGAILTAHLIYHLASKMDLKMEIFSLGDL--SKNVGKLLT-DMSSLYD----VG--RRKRTAGLLLVDRTFDLLTPCC 330 (783)
Q Consensus 260 lp~~~~lla~~L~~L~~~l~l~~~if~~G~~--Sr~Ia~~l~-~m~~~~~----a~--~~k~~asLIlVDRtlDl~tp~~ 330 (783)
....+..+|.+|.+++..||.+|.|++.|+. ++.+|+.+. .|..+.. .+ ..+....|||+||++|++||++
T Consensus 165 ~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLl 244 (594)
T 1dn1_A 165 KNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVL 244 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCEECCCTTSHHHHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCSSTTTS
T ss_pred chHHHHHHHHHHHHHHHHcCCCCEEEECCCchHHHHHHHHHHHHHHHhhccCccccCCCCCCCCeEEEEcCCcccccccc
Confidence 1235666899999999999999999999987 567887654 3433211 11 1123458999999999999997
Q ss_pred ---CCCchHHHHhhcCCCCCCccccccccCCccccccCCCCcCCCCceeeeeccccccccccccccccccchhhhhhccc
Q 003965 331 ---HGDSLVDRMFSSLPRRKRTAFYAHIKGSQSRAKLGSSSVQRSPVEVQIPLAKILSEEDSKLDDSRLQGNIEAFLRGW 407 (783)
Q Consensus 331 ---h~e~LlDri~~~Lpr~~~~~~~~~~~~~~~~~~~~~~~~~r~~~dV~v~m~~l~~~~~~~~~~~~~~~~~~~~~~g~ 407 (783)
||++++|++|++= . +-|.++.... ...+.+
T Consensus 245 hq~TYqalv~dll~I~------~-----------------------n~v~~~~~~~---~~~~~k--------------- 277 (594)
T 1dn1_A 245 HELTFQAMSYDLLPIE------N-----------------------DVYKYETSGI---GEARVK--------------- 277 (594)
T ss_dssp CCCBHHHHHHHHSCCB------T-----------------------TEEEEEECSS---SSCEEE---------------
T ss_pred ccccHHHHHHHHhccc------C-----------------------CEEEecCCCC---CCccce---------------
Confidence 8899999999981 1 2333332110 000000
Q ss_pred cccCCCcchhcccccccccccCCcccccCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCCcccccCCCCCCHHH
Q 003965 408 DAYNSSSEVVDLSLSSEIELLSGSFVSTENFRGTPYMEALLDRRMKDGTVLIKKWLQEALRQENLTVNVRSRPGSATKSE 487 (783)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~lweaLl~k~~kd~~~~V~k~L~Ea~~~E~l~~~ik~~~G~vT~~e 487 (783)
.. . ..++| .+|..++|+++.|+...|++.++++.++.+.. + .+..|.++
T Consensus 278 ----------------~~-~-----L~~~D----~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~---~--~~~~s~~d 326 (594)
T 1dn1_A 278 ----------------EV-L-----LDEDD----DLWIALRHKHIAEVSQEVTRSLKDFSSSKRMN---T--GEKTTMRD 326 (594)
T ss_dssp ----------------EE-E-----CSTTC----HHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC------------CCS
T ss_pred ----------------EE-e-----cCCCC----HHHHHHhccCHHHHHHHHHHHHHHHHHHhhhc---c--cccCCHHH
Confidence 01 1 11234 79999999999999999999999998876532 0 23457788
Q ss_pred HHHHHHHHhhCHHHHHhhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHH-hhhcccchH--hHHHHHHHhhccCccCCC
Q 003965 488 LQAMIKALAKNQSSLVRNRGIIQFATAALAALDESHSARWDAFISAEKML-HVSAEDTSQ--SLAAQIGDLINKSCLVGS 564 (783)
Q Consensus 488 L~~lik~l~~~~~~l~kh~g~LQLa~A~~qaL~~~~~s~wd~l~s~Eq~L-~~s~~dgs~--s~~~ql~~lI~~~~s~~~ 564 (783)
|.++|+.||+.++...+..-|+.+|.+|++..+. ..++++.+||.| .+.+.++.. ..+.+|.++|....
T Consensus 327 l~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~----~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~lL~~~~---- 398 (594)
T 1dn1_A 327 LSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG----TVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDAN---- 398 (594)
T ss_dssp SCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHSBCSSCCBCCCTHHHHHHHHHCTT----
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCcccchhHHHHHHHHHHHhCCC----
Confidence 9999999999999999999999999999999873 588999999988 544444442 35667777775322
Q ss_pred CccchhhhhhcccCCCHHHHHHHHhhhhhccCcCCCCCCCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhchhc
Q 003965 565 HDQKTRKMELSSRLLSFKDALLLTVTGYILAGENFPTSGSGGPFSWQEEHFLKEAIVDAIFENPSEAKFKFLHEQQYNDM 644 (783)
Q Consensus 565 ~~~~~~~~~~~~~~ls~ddiL~Lll~iyslaGe~~~~~~~~~~fs~~~E~~L~kaL~~ail~~~~~~~l~~l~~~~~~~~ 644 (783)
.+..|.|+| +.+|++..+.. + ++.+.++++++-+..... ..+ ++..
T Consensus 399 --------------~~~~dkLRL-~~Ly~l~~~g~-------~-----~~~~~~L~~~~~~~~~~~---~~i----~nl~ 444 (594)
T 1dn1_A 399 --------------VSTYDKIRI-ILLYIFLKNGI-------T-----EENLNKLIQHAQIPPEDS---EII----TNMA 444 (594)
T ss_dssp --------------SCHHHHHHH-HHHHHHHTTCB-------C-----HHHHHHHHHHHTCCHHHH---HHH----HHGG
T ss_pred --------------CChHhHHHH-HHHHHHHcCCC-------C-----HHHHHHHHHHcCCCHHHH---HHH----HHHH
Confidence 455555554 33555542211 1 567888887762211010 001 1111
Q ss_pred hhhhhHhhhhhhHHhhhhhhhhccccccCCCCCCCCCCCcccccCccccccHHHHHHHHh-cCCCCCCCCCCCCC-----
Q 003965 645 QLKLELQDRVDNLFKFLHKVSGLKRKNIPLRDSAFGSDSHFHGDSYASKGLLYKLLMKVL-AKSDVPGLEYHSST----- 718 (783)
Q Consensus 645 ~L~~e~~~r~~~lf~~l~~~s~~r~~~k~lr~~~~~~~n~y~q~~~rh~PlL~~~le~l~-~k~d~p~~~~~s~~----- 718 (783)
++++. .+.+ +..++..++.|+. ..++|+|+ ++||+|+|+++||+++ ||++...+||..+.
T Consensus 445 ~lG~~--~~~~---------~~~~k~~~~~~k~-~~~e~~Y~--lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~ 510 (594)
T 1dn1_A 445 HLGVP--IVTD---------STLRRRSKPERKE-RISEQTYQ--LSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASF 510 (594)
T ss_dssp GGTCC--CBCC---------CGGGCCCCCCCCC-CCCSCCCT--TCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC-----
T ss_pred HhCCc--cccc---------ccccccccccccc-CCCCccce--eeccchHHHHHHHHHHhCCCCcccCCccCCCCCccc
Confidence 22221 0000 0011112223332 34689996 4679999999999999 88876666664321
Q ss_pred ------C------CCC-cCC---CCeEEEEEECCcCHHHHHHHHHHhhccCCCCcEEEEccccccChhHHHHHhhc
Q 003965 719 ------A------KPS-LAD---QNVILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPADMFDLLLG 778 (783)
Q Consensus 719 ------~------~~~-p~d---~~~iIVFVVGGvTyeE~R~v~e~~~~s~~~~~~VilGgT~ilnp~~fl~~l~~ 778 (783)
. +.+ |++ +|+||||||||+||||||+||+++++ .+|++||||||+||||++||++|-.
T Consensus 511 ~~~~~s~r~~~w~~~~~~~~~~~~~riivFivGG~Ty~E~r~~~els~~--~~~~~VilG~t~il~p~~Fl~~l~~ 584 (594)
T 1dn1_A 511 STTAVSARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQA--NGKWEVLIGSTHILTPQKLLDTLKK 584 (594)
T ss_dssp ---------------------CCCCEEEEEEETCEEHHHHHHHHHHHHH--HSSCEEEEEESSEECHHHHHHHHTT
T ss_pred cccccccccccccccCCccccccCCcEEEEEeCCccHHHHHHHHHHHhh--cCCceEEEeeCCcCCHHHHHHHHHH
Confidence 1 112 443 68899999999999999999999653 5779999999999999999999864
|
| >3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A | Back alignment and structure |
|---|
| >2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} | Back alignment and structure |
|---|
| >3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A | Back alignment and structure |
|---|
| >1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A | Back alignment and structure |
|---|
| >1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 783 | ||||
| d1epua_ | 590 | e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshor | 3e-05 | |
| d1dn1a_ | 589 | e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no | 3e-05 | |
| d1dn1a_ | 589 | e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no | 0.003 | |
| d1mqsa_ | 653 | e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha | 7e-05 | |
| d1mqsa_ | 653 | e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha | 4e-04 |
| >d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Sec1/munc18-like (SM) proteins superfamily: Sec1/munc18-like (SM) proteins family: Sec1/munc18-like (SM) proteins domain: Neuronal Sec1, NSec1 species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]
Score = 45.1 bits (106), Expect = 3e-05
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 705 AKSDVPGLEYHSSTAKPSLADQNVILIFVIGGINGLEVHEALEALSESGRPDLELILGGT 764
V +H + S ++IFV+GGI+ E+ + ++++ + + E+ILG T
Sbjct: 514 QPVSVRYGHWHKDKGQASYKSGPRLIIFVVGGISYSEMR-SAYEVTQTAKNNWEVILGST 572
Query: 765 TLLTPADMFDLL 776
+LTP + L
Sbjct: 573 HILTPEGLLRDL 584
|
| >d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589 | Back information, alignment and structure |
|---|
| >d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589 | Back information, alignment and structure |
|---|
| >d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653 | Back information, alignment and structure |
|---|
| >d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 783 | |||
| d1epua_ | 590 | Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig | 100.0 | |
| d1dn1a_ | 589 | Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax | 100.0 | |
| d1mqsa_ | 653 | Sly1P protein {Baker's yeast (Saccharomyces cerevi | 99.97 |
| >d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Sec1/munc18-like (SM) proteins superfamily: Sec1/munc18-like (SM) proteins family: Sec1/munc18-like (SM) proteins domain: Neuronal Sec1, NSec1 species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]
Probab=100.00 E-value=1.3e-34 Score=331.59 Aligned_cols=537 Identities=15% Similarity=0.190 Sum_probs=327.7
Q ss_pred HHHHhHHH-HHHHHhhcc----EEEecCcchhhhhhcCCHHHHHhhccccccccccCCCccccccccCCCCCCceEEEEE
Q 003965 8 KSCIDSIK-QISEHIKDA----ILYLDSGCTESFQLIGAFPVLLELGVRAVCCLENMSPLDSVVDWNSNIDPMRKMVVMT 82 (783)
Q Consensus 8 ~~~~~~~~-~v~~~v~ga----vvylD~g~~E~l~w~gg~~~Lle~Ga~~V~~L~~~s~~d~~~~~~~~~~~~~k~V~i~ 82 (783)
+-|++-.. ++...|++. |+-+|.-+.-.+--.....-|++.|+.-|-.|+.- +- .-+..++|+|+
T Consensus 4 ~~~~~~~l~~~~~~v~~~~~wKvLi~D~~t~~ils~~~~~~~L~~~gV~l~~~l~~~---r~-------~~~~~~aIy~i 73 (590)
T d1epua_ 4 TAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRR---RE-------PLPLLEAVYLI 73 (590)
T ss_dssp HHHHHHHHHHTHHHHCSSSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSSC---CC-------CEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEcCCcHHHHHhhcCHHHHHHCCCeEEEeccCC---CC-------CCCCCCEEEEE
Confidence 44545554 377777764 89999999999999999999999999987777431 10 11135678887
Q ss_pred ccccchhHHHHHHHHHhcCCccE---EEEEeecChhhhcccCCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCCccc
Q 003965 83 SRLLSDAHRYIVRCLSASYGIRH---CAIFTSISEIAHSAYTDSPLGPDAFHEYETLLLQDYEELVRKRQTKSGQSEDTG 159 (783)
Q Consensus 83 s~lL~~~~~~ilr~l~~~~~~~~---c~V~tsvSe~aH~~~~~~~l~~~a~~e~~~~~~~~~ee~~~~~~~~~~~~~~~~ 159 (783)
+--. ..-..|++++.....-.| -++||+. . +. .+.+++.+ ..
T Consensus 74 ~Pt~-eni~~i~~d~~~~~~~~Y~~~~i~F~~~------------~-~~-------~~l~~la~----~~---------- 118 (590)
T d1epua_ 74 TPTE-ESVKCLMADFQNPDNPQYRGAHIFFTEA------------C-PE-------ELFKELCK----ST---------- 118 (590)
T ss_dssp CCCH-HHHHHHHHHTSSTTSCSEEEEEEEESSC------------C-CH-------HHHHHHHH----ST----------
T ss_pred CCCH-HHHHHHHHHhhhhhcccCceEEEEECCC------------C-CH-------HHHHHHHh----cc----------
Confidence 7542 222445555532111223 2444443 1 11 11222222 10
Q ss_pred ccccccccCCCccccCCCCCcccccccCCCCccccccccCCcceEEEEeeceeeccCCCCeecccCCchhhhhhcccccc
Q 003965 160 FQKRLTFEDDGWSHLTSSEEDTSTFEASSSGKDFYKEDVGQELVVSVHHFPMILCPLSPRVFVLPSEGSVAEACLSVEHE 239 (783)
Q Consensus 160 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~V~~~Pl~~~pl~~~lf~lp~~~s~~~~~l~~~~~ 239 (783)
. -....+|.++++.|.|+++++|+++...++..+|....
T Consensus 119 -----------~----------------------------~~~i~~i~e~~~df~~l~~~lfsl~~~~~~~~~~~~~~-- 157 (590)
T d1epua_ 119 -----------T----------------------------ARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSR-- 157 (590)
T ss_dssp -----------T----------------------------GGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCGGG--
T ss_pred -----------c----------------------------cccCCeEEEEecceEeCCCCEEEecCCcHHHHhcCcch--
Confidence 0 02246899999999999999999999777766553211
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcceeeecCch------hHHHHHHHhhhhhhhhc-c--cc
Q 003965 240 DSLSPVLPPIGTGLFSDGDDVPPGAILTAHLIYHLASKMDLKMEIFSLGDL------SKNVGKLLTDMSSLYDV-G--RR 310 (783)
Q Consensus 240 ~sl~p~lPp~~~g~~~d~d~lp~~~~lla~~L~~L~~~l~l~~~if~~G~~------Sr~Ia~~l~~m~~~~~a-~--~~ 310 (783)
.+.+ ...+..+|.+|.+++..||.+|.|++.|+. |+.|++.|..+...... . ..
T Consensus 158 ---------------~~~~--~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~a~~v~~~l~~~~~~~~~~~~~~~ 220 (590)
T d1epua_ 158 ---------------AQGG--IPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQ 220 (590)
T ss_dssp ---------------STTC--HHHHHHHHHHHHHHHHHHTCCCEEEECTTSTHHHHHHHHHHHHHHHHHHTCTTTTCHHH
T ss_pred ---------------hhcc--hhHHHHHHHHHHHHHHHcCCCCeEEEeCCchHHHHHHHHHHHHHHHHhhcCccccCCCC
Confidence 1111 135667999999999999999999999974 44444444433332111 1 12
Q ss_pred CCceeEEEEecccccccCCC---CCCchHHHHhhcCCCCCCccccccccCCccccccCCCCcCCCCceeeeecccccccc
Q 003965 311 KRTAGLLLVDRTFDLLTPCC---HGDSLVDRMFSSLPRRKRTAFYAHIKGSQSRAKLGSSSVQRSPVEVQIPLAKILSEE 387 (783)
Q Consensus 311 k~~asLIlVDRtlDl~tp~~---h~e~LlDri~~~Lpr~~~~~~~~~~~~~~~~~~~~~~~~~r~~~dV~v~m~~l~~~~ 387 (783)
+....|||+||++|++||++ ||++|+|++|++ +. +-|.++...- +
T Consensus 221 ~~~~~LiIlDR~~DliTPLlh~~TYqaLi~e~~~I------~~-----------------------n~v~~~~~~~---~ 268 (590)
T d1epua_ 221 KDRSQLLILDRGFDPISPLLHELTFQAMAYDLLPI------EN-----------------------DVYKYVNTGG---N 268 (590)
T ss_dssp HTSCEEEEEEGGGCSSGGGSCCCBHHHHHHHHSCC------BT-----------------------TEECC---------
T ss_pred CCCceEEEEeccccccccccccccHHHHHHHHhcc------cC-----------------------CeeEecCCCC---C
Confidence 22457999999999999987 789999999998 11 2233332110 0
Q ss_pred ccccccccccchhhhhhccccccCCCcchhcccccccccccCCcccccCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHH
Q 003965 388 DSKLDDSRLQGNIEAFLRGWDAYNSSSEVVDLSLSSEIELLSGSFVSTENFRGTPYMEALLDRRMKDGTVLIKKWLQEAL 467 (783)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~lweaLl~k~~kd~~~~V~k~L~Ea~ 467 (783)
. .+. ... +...+| .+|..++++++.|+...|++.++++.
T Consensus 269 ~------------------------~~~--------k~~-----~l~~~D----~~~~~~r~~~f~~v~~~i~~~~~~~~ 307 (590)
T d1epua_ 269 E------------------------VPE--------KEV-----LLDEKD----DLWVEMRHQHIAVVSQNVTKKLKQFA 307 (590)
T ss_dssp -------------------------------------CE-----ECCGGG----SSHHHHTTSBHHHHHHHHHHHHHHHH
T ss_pred C------------------------Ccc--------eee-----ecCCcc----hHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 0 000 000 111223 69999999999999999999999997
Q ss_pred HhcCCCcccccCCCCCCHHHHHHHHHHHhhCHHHHHhhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHh-hhcccchH
Q 003965 468 RQENLTVNVRSRPGSATKSELQAMIKALAKNQSSLVRNRGIIQFATAALAALDESHSARWDAFISAEKMLH-VSAEDTSQ 546 (783)
Q Consensus 468 ~~E~l~~~ik~~~G~vT~~eL~~lik~l~~~~~~l~kh~g~LQLa~A~~qaL~~~~~s~wd~l~s~Eq~L~-~s~~dgs~ 546 (783)
.+.+.. ......+..++..+++.+++.++......-|+.++.+|++..+ .++++++.+||.++ +...++..
T Consensus 308 ~~~~~~----~~~~~~~~~~l~~~v~~lp~~~~~~~~l~~H~~i~~~l~~~i~----~~l~~~~~~Eq~i~~~~~~~~~~ 379 (590)
T d1epua_ 308 DEKRMG----TAADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQ----QHVDKLCKVEQDLAMGTDADGEK 379 (590)
T ss_dssp HHTC------------CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSBCTTSCB
T ss_pred HHhhhh----ccccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCcchhh
Confidence 654432 1123447788999999999988888888999999999999876 47999999999884 33333332
Q ss_pred --hHHHHHHHhhccCccCCCCccchhhhhhcccCCCHHHHHHHHhhhhhccCcCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 003965 547 --SLAAQIGDLINKSCLVGSHDQKTRKMELSSRLLSFKDALLLTVTGYILAGENFPTSGSGGPFSWQEEHFLKEAIVDAI 624 (783)
Q Consensus 547 --s~~~ql~~lI~~~~s~~~~~~~~~~~~~~~~~ls~ddiL~Lll~iyslaGe~~~~~~~~~~fs~~~E~~L~kaL~~ai 624 (783)
..+.++.+++.... .+..|+|+|++ +|++.....+ +..+.+++..+.
T Consensus 380 ~~~~~~~~~~~l~~~~------------------~~~~d~LRLl~-l~~l~~~g~~------------~~~~~~l~~~~~ 428 (590)
T d1epua_ 380 IRDHMRNIVPILLDQK------------------ISAYDKIRIIL-LYIIHKGGIS------------EENLAKLVQHAH 428 (590)
T ss_dssp CCCCHHHHHHHHTCTT------------------SCHHHHHHHHH-HHHHHHTCBC------------HHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHhCCC------------------CCHHHHHHHHH-HHHHhccCCC------------hHHHHHHHHHcC
Confidence 23445555554322 67888888744 7877654421 455666554432
Q ss_pred hcCCCcchhhhhhhhhchhchhhhhHhhhhhhHHhhhhhhhhccccccCCCCCCCCCCCcccccCccccccHHHHHHHHh
Q 003965 625 FENPSEAKFKFLHEQQYNDMQLKLELQDRVDNLFKFLHKVSGLKRKNIPLRDSAFGSDSHFHGDSYASKGLLYKLLMKVL 704 (783)
Q Consensus 625 l~~~~~~~l~~l~~~~~~~~~L~~e~~~r~~~lf~~l~~~s~~r~~~k~lr~~~~~~~n~y~q~~~rh~PlL~~~le~l~ 704 (783)
+.. .....+ .+...++... .+.+ ......... ....+.. ...++.|. .++|+|+++++++.++
T Consensus 429 ~~~---~~~~~~----~~l~~lg~~~-~~~~----~~~~~~~~~--~~~~~~~-~~~d~~y~--~s~y~Pli~~lve~~~ 491 (590)
T d1epua_ 429 IPA---EEKWII----NDMQNLGVPI-IQDG----GRRKIPQPY--HTHNRKE-RQADHTYQ--MSRWTPYMKDIMEAAV 491 (590)
T ss_dssp CCH---HHHHHH----HHGGGGTCCC-BSCT----TSCCCCCTT--SGGGSCC-CCSCCSCG--GGCCCCHHHHHHHHHH
T ss_pred CCH---HHHHHH----HHHHHhCCcc-cccc----cccccchhh--hcccccc-CCccccce--eecchHHHHHHHHHHH
Confidence 110 000001 0111111100 0000 000000000 0001110 11244453 2479999999999999
Q ss_pred -cCCCCCCCCCCCCC-----------------CCC----CcCCCCeEEEEEECCcCHHHHHHHHHHhhccCCCCcEEEEc
Q 003965 705 -AKSDVPGLEYHSST-----------------AKP----SLADQNVILIFVIGGINGLEVHEALEALSESGRPDLELILG 762 (783)
Q Consensus 705 -~k~d~p~~~~~s~~-----------------~~~----~p~d~~~iIVFVVGGvTyeE~R~v~e~~~~s~~~~~~VilG 762 (783)
++++...+|+.... .+. .+...++||||||||+||+|+++++++..+ .++|.+||||
T Consensus 492 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVfvvGGvTy~Ei~~l~~l~~~-~~~~~~iiiG 570 (590)
T d1epua_ 492 EDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASYKSGPRLIIFVVGGISYSEMRSAYEVTQT-AKNNWEVILG 570 (590)
T ss_dssp TTCSCTTTSCBTTSCC-------------------------CCCCEEEEEEETCBCHHHHHHHHHHHTS-SCSSCEEEEE
T ss_pred hCCCCccccccccCCCCCcccccccccccCcccCCCCccccCCCCEEEEEEECCcCHHHHHHHHHHHHh-hCCCcEEEEE
Confidence 66654444433211 000 122446799999999999999999999543 4678999999
Q ss_pred cccccChhHHHHHhh
Q 003965 763 GTTLLTPADMFDLLL 777 (783)
Q Consensus 763 gT~ilnp~~fl~~l~ 777 (783)
||+|+||++|+++|-
T Consensus 571 sT~i~n~~~fl~~l~ 585 (590)
T d1epua_ 571 STHILTPEGLLRDLR 585 (590)
T ss_dssp ESSBCCHHHHHHHHH
T ss_pred eCCeecHHHHHHHHH
Confidence 999999999999885
|
| >d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|