Citrus Sinensis ID: 004019

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------78
Protein Sequence
MGSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKER
Secondary Structure (PSIPRED)
cccccccHHHHHccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHEcccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgstgepdrkrrhfssisptaatakknpffpsseekkiDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKErqqpydstLKVVNKSWEELITDLESCSmraressngqesrclsiiedvtphpshdaFLSRLMetgatesssadncpnqmeedretgiprtkNIVSNILAAVDNLWHLKGGLYAAVLKDlqdggskqkasSNLQSEVKNLRLALMDLHLKHKSLTRELqsrqdidaKDKAKLNRLKGELESAVKELEECNCKLAALRAerdvtkgaffpvlnlgnkhvagdrvrdeqrDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFrrssavtdskIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEdrsqnsanLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKER
Flexible Loop (DISEMBL)
mgstgepdrkrrhfssisptaatakknpffpsSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFaqlkerqqpydstlKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIEDVTPHPSHDAFLSRLMETGAtesssadncpnqMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSltrelqsrqdidakdkaKLNRLKGELESAVKELEECNCKLAALRAERDVTKgaffpvlnlgnkhvagdrvrdeqRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETElnmkidlvdvfrrssavtdskiadlgieiqkqideknriemrleeasrepgrkeIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHslkssldeqsLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAedrsqnsanlentqkrlsdvrkssvqvrgsleesqskvyksrltlmELQIELVKER
Low Complexity Region (SEG)
MGSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMqtqnqqllqqITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKER
Disordered region (IsUnstruct)
****************************************AVLQFQNQKLVQKLE**KVEYSAL****************TLKVVNKSWEELITDL*******************************************************************KNIVSNILAAVDNLWHLKGGLYAAVLKDL*********************LALMDL***********************************VKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVA***************************QLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQL***KSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQ************************IIAEFRALV***************KYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLK***********V**************************************************AYLSEIETI*************LLQQITERDDYNIKLVLEGVRARQLQDALLMDKHM****IQQANASLNFFDMKAARIENQLRFCLD**************************************************************
Disordered Region (DISOPRED)
******************************************************************************************E*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************I*L****
Disordered Region (DISEMBL)
*************FSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCS************RCLSIIEDVTPHPSHDAFLSRLMET*********************GIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDL************LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLEN************************KVYKSRLTLMELQIELVKER
Disordered Region (DISPRO)
***********************************KKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRAR******************PHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERD*************************QRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIEL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQxxxxxxxxxxxxxxxxxxxxxxxxxxxxQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRDVTKGAFFPVLNLGNKHVAGDRxxxxxxxxxxxxxxxxxxxxxASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIExxxxxxxxxxxxxxxxxxxxxPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKER
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	779	2.2.26 [Sep-21-2011]
Q8RXD6	878	E3 ubiquitin-protein liga	yes	no	0.997	0.884	0.579	0.0
Q7XU27	884	E3 ubiquitin-protein liga	yes	no	0.997	0.878	0.463	1e-174
A2XW69	884	E3 ubiquitin-protein liga	N/A	no	0.997	0.878	0.463	1e-173
Q9C895	900	E3 ubiquitin-protein liga	no	no	0.987	0.854	0.305	8e-92
Q336R3	844	E3 ubiquitin-protein liga	no	no	0.924	0.853	0.321	2e-91
A2ZAC2	844	E3 ubiquitin-protein liga	N/A	no	0.924	0.853	0.321	2e-91
Q4R7K7	1001	E3 ubiquitin-protein liga	N/A	no	0.196	0.152	0.347	2e-13
O75150	1001	E3 ubiquitin-protein liga	no	no	0.196	0.152	0.347	4e-13
Q8CJB9	1002	E3 ubiquitin-protein liga	yes	no	0.200	0.155	0.335	4e-13
Q5RAU7	1001	E3 ubiquitin-protein liga	yes	no	0.313	0.243	0.282	4e-13

>sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana GN=HUB1 PE=1 SV=1

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/782 (57%), Positives = 581/782 (74%), Gaps = 5/782 (0%)

Query: 1   MGSTGEPDRKRRHFSSISPT--AATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQK 58
           M STGEPDRKRRHFSSISP+  AA  KK PFF  S E K+DTAVLQFQN KL QKLE Q+
Sbjct: 1   MASTGEPDRKRRHFSSISPSEAAAAVKKQPFFWPSSEDKLDTAVLQFQNLKLSQKLEAQQ 60

Query: 59  VEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSII 118
           VE S LE+K +Q+KE+Q PY+S+LK V+KSWE+L   +ESCS+R  +SS+G   R ++  
Sbjct: 61  VECSILEDKLSQIKEKQLPYNSSLKTVHKSWEKLTASVESCSVRVSDSSSGAH-RFVNKE 119

Query: 119 EDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLW 178
           +  +P   +D F++RL+ETGATESSS++ C NQMEE+      +    + N++AA ++L 
Sbjct: 120 DGSSPAVKND-FINRLLETGATESSSSNICSNQMEENGVNTSSQMTQTLYNLVAATEDLR 178

Query: 179 HLKGGLYAAVLK-DLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDID 237
            LK  LY  VL+ +L      Q A S L+SE+K+ R  L D+ +K KSL+RELQS +D D
Sbjct: 179 CLKDELYPTVLRTNLGKDLCGQLALSELESEIKSFRGDLDDVLVKFKSLSRELQSHRDAD 238

Query: 238 AKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRD 297
           AK +  L R++GELE  V EL++CN  L+ALRAERD T GAFFPVL+LGNK    DR RD
Sbjct: 239 AKVRVDLKRIRGELEDEVVELQQCNGDLSALRAERDATAGAFFPVLSLGNKLATSDRERD 298

Query: 298 EQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFL 357
           +QRDL+DME+V KEL   AS +L +LK LH+ R K+L ++ NLQN  KSV+C+SSS+A L
Sbjct: 299 KQRDLQDMETVLKELTVLASGRLQQLKNLHEERTKMLGKMSNLQNKSKSVRCISSSQACL 358

Query: 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIAD 417
           S+K+QLEKSK  VF+Y AL EKLQVEKD++ W+E E+N+K +L DV R++SAVTDS++A 
Sbjct: 359 SLKDQLEKSKEAVFQYMALLEKLQVEKDSIVWKEREINIKNELGDVSRKTSAVTDSRMAS 418

Query: 418 LGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAA 477
           L  EIQKQ+DEK RI+ RL   SRE GRKEI A+ +AL+SSFPE+MS+M+ QL+ YKE A
Sbjct: 419 LDSEIQKQLDEKMRIKTRLGNISRERGRKEIFADMKALISSFPEEMSSMRSQLNNYKETA 478

Query: 478 LDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILD 537
             IH LRADV SL+ VL RK KE E L   SAD  +++  L A V DL +S+ ELKL LD
Sbjct: 479 GGIHSLRADVQSLSGVLCRKTKEYEALQLRSADYASQLGDLNATVCDLKNSHEELKLFLD 538

Query: 538 MYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAE 597
           MY+RESTD+RD+  A++ EY+AWAHV SLKSSLDEQ+LELRVK A EAEA+SQQ LAAAE
Sbjct: 539 MYKRESTDARDIAEAKEQEYRAWAHVQSLKSSLDEQNLELRVKAANEAEAVSQQMLAAAE 598

Query: 598 AEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT 657
           AEIAD+RQK++  KRD+   SD LKSK+EE   YLSEI+TIG +Y+D+  QNQQLL Q+T
Sbjct: 599 AEIADLRQKMDDCKRDVAKHSDILKSKHEEHGTYLSEIQTIGSAYEDIVPQNQQLLLQVT 658

Query: 658 ERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLD 717
           ERDDYNIKL LEG+ +RQ+QD LL+DK++M+ +IQQ +A  +F   K++RIE+QLRFC D
Sbjct: 659 ERDDYNIKLFLEGITSRQMQDTLLIDKYIMDKDIQQGSAYASFLSKKSSRIEDQLRFCTD 718

Query: 718 QAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVK 777
           Q Q+LAED+ Q S +LEN QK+ +D+     Q R  LEES SKV +SRL    L++EL  
Sbjct: 719 QFQKLAEDKYQKSVSLENLQKKRADIGNGLEQARSRLEESHSKVEQSRLDYGALELELEI 778

Query: 778 ER 779
           ER
Sbjct: 779 ER 780

E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6. Required for the regulation of flowering time and defense against necrotrophic fungal pathogens.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q7XU27|BRE1A_ORYSJ E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. japonica GN=BRE1A PE=2 SV=3

 Score =  611 bits (1576), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 365/788 (46%), Positives = 521/788 (66%), Gaps = 11/788 (1%)

Query: 1   MGSTGEPDRKRRHFSSISPTAAT----AKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLET 56
           MGSTGEPDRKRR  SS++P        AK+    P+SE+KK+D  VL+++NQKL ++LE 
Sbjct: 1   MGSTGEPDRKRRLSSSVAPGGGAPVSPAKRLAVAPTSEDKKLDFTVLKYKNQKLSEQLEA 60

Query: 57  QKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSM-RARESSNGQESRCL 115
            K EY ALENKFA LKE+Q+ ++ TL +VN SWE+L+ DL+S S  ++   ++   S   
Sbjct: 61  HKFEYRALENKFAGLKEKQRTHNETLSLVNSSWEQLVADLKSRSFCKSGSPNSSPGSGHN 120

Query: 116 SIIEDVTPHPSHDAFLSRLMETGATESSSA-DNCPNQMEEDRETGIPRTKNIVSNILAAV 174
           ++ +D T  P     L  L+E+GATESS     C   +  D       T N + +I    
Sbjct: 121 NVQKDGTCAPIERDTLRSLVESGATESSGCLPGC--HLGSDAPPLHLSTANALGDIFFPS 178

Query: 175 DNLWHLKGGLYAAVLKDLQDGG-SKQKASSNLQSEVKNLRL--ALMDLHLKHKSLTRELQ 231
            +L         A L  L +   SKQ  S++         +  AL +L LKHK L  + Q
Sbjct: 179 SDLLQANEECALAALTKLPENDRSKQLQSTSSNLLSSLNNVVQALSNLQLKHKQLAEDYQ 238

Query: 232 SRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVA 291
           +++D  A+ +A+  RLK EL SA  ELEE N KLAAL+A+RD T+GA  P   LGNK++ 
Sbjct: 239 NQRDSSARKRAEHRRLKEELASAASELEETNYKLAALKAQRDNTQGARIPYPTLGNKNMP 298

Query: 292 GDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLS 351
            D+VRD+QR+++D+E+ HKEL +  S +L+E+K LH+ RI++L ++   QN L   K + 
Sbjct: 299 EDKVRDKQREMQDLEATHKELSELISKRLVEIKRLHEERIEILNKIATFQNILMDFKSIR 358

Query: 352 SSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVT 411
           SSKAF  V ++L+KS++E+  YQ L EKLQV+KD   W+E + N+K+DL ++  R S   
Sbjct: 359 SSKAFQLVNDRLQKSQAELDHYQTLLEKLQVDKDKFVWQERQFNLKVDLAEIPERVSTYC 418

Query: 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLS 471
           +S IADL  +IQK  DEKN + ++LEEASREPGR ++I +F+ALVSS P +M AMQ +++
Sbjct: 419 ESSIADLKKDIQKLCDEKNMLILKLEEASREPGRNQVITKFKALVSSIPREMGAMQSEMT 478

Query: 472 KYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLE 531
           K+KEA+L+++ LRA+V SL+ +L RK ++ E     SA   ++I +LQ+++ DL  +N E
Sbjct: 479 KHKEASLELNSLRAEVHSLSRILSRKERDNEEASCRSARAGSDITQLQSVISDLKQTNKE 538

Query: 532 LKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQ 591
           LKL  DMY+RESTDSR+++ +RD E+  WAHVH+LKSSLDE  LE RVK A EAEAI+QQ
Sbjct: 539 LKLFADMYKRESTDSREIMESRDREFLEWAHVHALKSSLDESKLEQRVKAANEAEAITQQ 598

Query: 592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQ 651
           RLA AEAEIA+  QKL   ++D+VSLS  LKSK EE EAY  E+E IGQ+Y+D+Q QNQQ
Sbjct: 599 RLATAEAEIAESGQKLGTSRKDLVSLSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQ 658

Query: 652 LLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQ 711
           LLQQI ERDD N K+ +EGV+A+Q QDAL ++ + +   +QQ ++ ++ ++ K   +E+Q
Sbjct: 659 LLQQIIERDDDNTKIFMEGVKAKQTQDALHLETYSLRRNLQQESSLMDLYNQKIVSLEDQ 718

Query: 712 LRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMEL 771
           L+   D+  +L ED  Q S +L N Q++L DV + + ++  SL+  Q+ V  SRL + +L
Sbjct: 719 LKMWSDRVGKLQEDGWQQSVSLSNYQRKLVDVHRDAQKLMQSLDGIQANVGSSRLEVADL 778

Query: 772 QIELVKER 779
            IEL KER
Sbjct: 779 LIELEKER 786

E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A2XW69|BRE1A_ORYSI E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. indica GN=BRE1A PE=3 SV=2

 Score =  609 bits (1571), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 365/788 (46%), Positives = 520/788 (65%), Gaps = 11/788 (1%)

Query: 1   MGSTGEPDRKRRHFSSISPTAAT----AKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLET 56
           MGSTGEPDRKRR  SS++P        AK+    P+SE+KK+D  VL+++NQKL ++LE 
Sbjct: 1   MGSTGEPDRKRRLSSSVAPGGGAPVSPAKRLAVAPTSEDKKLDFTVLKYKNQKLSEQLEA 60

Query: 57  QKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSM-RARESSNGQESRCL 115
            K EY ALENKFA LKE+Q+ ++ TL +VN SWE+L+ DL+S S  ++   ++   S   
Sbjct: 61  HKFEYRALENKFAGLKEKQRTHNETLSLVNSSWEQLVADLKSRSFCKSGSPNSSPGSGHN 120

Query: 116 SIIEDVTPHPSHDAFLSRLMETGATESSSA-DNCPNQMEEDRETGIPRTKNIVSNILAAV 174
           ++ +D T  P     L  L+E+GATESS     C   +  D       T N + +I    
Sbjct: 121 NVQKDGTCAPIERDTLRSLVESGATESSGCLPGC--HLGSDAPPLHLSTANALGDIFFPS 178

Query: 175 DNLWHLKGGLYAAVLKDLQDGG-SKQKASSNLQSEVKNLRL--ALMDLHLKHKSLTRELQ 231
            +L         A L  L +   SKQ  S++         +  AL +L LKHK L  + Q
Sbjct: 179 SDLLQANEECALAALTKLPENDRSKQLQSTSSNLLSSLNNVVQALSNLQLKHKQLAEDYQ 238

Query: 232 SRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVA 291
           +++D  A+ +A+  RLK EL SA  ELEE N KLAAL+A+RD T+GA  P   LGNK + 
Sbjct: 239 NQRDSSARKRAEHRRLKEELASAASELEETNYKLAALKAQRDNTQGARIPYPTLGNKSMP 298

Query: 292 GDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLS 351
            D+VRD+QR+++D+E+ HKEL +  S +L+E+K LH+ RI++L ++   QN L   K + 
Sbjct: 299 EDKVRDKQREMQDLEATHKELSELISKRLVEIKRLHEERIEILNKIATFQNILMDFKSIR 358

Query: 352 SSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVT 411
           SSKAF  V ++L+KS++E+  YQ L EKLQV+KD   W+E + N+K+DL ++  R S   
Sbjct: 359 SSKAFQLVNDRLQKSQAELDHYQTLLEKLQVDKDKFVWQERQFNLKVDLAEIPERVSTYC 418

Query: 412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLS 471
           +S IADL  +IQK  DEKN + ++LEEASREPGR ++I +F+ALVSS P +M AMQ +++
Sbjct: 419 ESSIADLKKDIQKLRDEKNMLILKLEEASREPGRNQVITKFKALVSSIPREMGAMQSEMT 478

Query: 472 KYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLE 531
           K+KEA+L+++ LRA+V SL+ +L RK ++ E     SA   ++I +LQ+++ DL  +N E
Sbjct: 479 KHKEASLELNSLRAEVHSLSRILSRKERDNEEASCRSARAGSDITQLQSVISDLKQTNKE 538

Query: 532 LKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQ 591
           LKL  DMY+RESTDSR+++ +RD E+  WAHVH+LKSSLDE  LE RVK A EAEAI+QQ
Sbjct: 539 LKLFADMYKRESTDSREIMESRDREFLEWAHVHALKSSLDESKLEQRVKAANEAEAITQQ 598

Query: 592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQ 651
           RLA AEAEIA+  QKL   ++D+VSLS  LKSK EE EAY  E+E IGQ+Y+D+Q QNQQ
Sbjct: 599 RLATAEAEIAESGQKLGTSRKDLVSLSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQ 658

Query: 652 LLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQ 711
           LLQQI ERDD N K+ +EGV+A+Q QDAL ++ + +   +QQ ++ ++ ++ K   +E+Q
Sbjct: 659 LLQQIIERDDDNTKIFMEGVKAKQTQDALHLETYSLRRNLQQESSLMDLYNQKIVSLEDQ 718

Query: 712 LRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMEL 771
           L+   D+  +L ED  Q S +L N Q++L DV + + ++  SL+  Q+ V  SRL + +L
Sbjct: 719 LKMWSDRVGKLQEDGWQQSVSLSNYQRKLVDVHRDAQKLMQSLDGIQANVGSSRLEVADL 778

Query: 772 QIELVKER 779
            IEL KER
Sbjct: 779 LIELEKER 786

E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6.

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana GN=HUB2 PE=1 SV=2

 Score =  338 bits (868), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 246/805 (30%), Positives = 430/805 (53%), Gaps = 36/805 (4%)

Query: 4   TGEPDRKRRHF-SSISPTAATAKKNPFFPSSE-------------------EKKIDTAVL 43
           + EP +K+ H   S+SP +     +P  P ++                   E  +D  VL
Sbjct: 6   SDEPMQKKPHLLDSVSPNSMARNSSPSHPIAKSVSFFDCDFSLLCLRLVDYEIDVDATVL 65

Query: 44  QFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRA 103
           Q QNQKLVQ+L+ QK +   +E+K  +L+  Q  YD  L  VN+ W +L+ DL    +RA
Sbjct: 66  QLQNQKLVQQLDLQKKQLYDVESKIQELQLNQTSYDDELISVNQLWNQLVDDLILLGVRA 125

Query: 104 RESSNGQESRCLSIIED--VTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIP 161
              +N +    L I++   V P  + + FL RL++  + ++S +D    ++EE     + 
Sbjct: 126 --GANQEALNYLDIVDKKRVPPCAADETFLCRLLQVDSLDTSKSDEVVRKVEE----ALA 179

Query: 162 RTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQS-------EVKNLRL 214
              +    ++   +N    +     ++ + L    S + A+  L S       E KNLR 
Sbjct: 180 LRHSSTMELMGLFENTIDTQKTKAESISQSLHAVKSTEDATIQLSSINDLMKEESKNLRE 239

Query: 215 ALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDV 274
            +  LH++HK  + ++Q+     + D+++L  LKG+LE    ELEE   KL  L+ ++D 
Sbjct: 240 MIDALHVRHKEHSEQIQAYISSHSTDQSELKHLKGQLEEIKAELEENRRKLITLKMQKDA 299

Query: 275 TKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVL 334
                     + N  ++ ++  D+ + LR+++    E+   A  +L EL+   +  + + 
Sbjct: 300 ACEGHVTSPAIANGSLSPEKPVDKTK-LRELKDSIDEIKIMAEGRLSELQASQEYNLSLS 358

Query: 335 QQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETEL 394
           +Q  +++N LK  + + SS+ +  + +++    +E+ +Y+ L E +Q E+  +  R+ EL
Sbjct: 359 RQCQDIENELKDDQYIYSSRLYSLINDRIHHWNAELDRYKILTEAIQAERSFVMRRDKEL 418

Query: 395 NMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRA 454
           N++ + ++     +    S+I  L  ++Q  I EKN +E+  EEA ++  R++I +EF A
Sbjct: 419 NLRAESLEAANHKTTTVGSRIEVLEKKLQSCIIEKNGLELETEEAIQDSERQDIKSEFIA 478

Query: 455 LVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAE 514
           + S+  ++M  M+ QL ++K+ A D   LR    SL   L  K  E + L    A Q+AE
Sbjct: 479 MASTLSKEMEMMEAQLKRWKDTAQDALYLREQAQSLRVSLSNKADEQKGLEDKCAKQMAE 538

Query: 515 IHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQS 574
           I  L+A+++ L    L+L+ +  +  RE  D R +   +D + KA A    LK+ LDE  
Sbjct: 539 IKSLKALIEKLLKEKLQLQNLASICTRECNDDRGLAEIKDSQRKAQAQAEELKNVLDEHF 598

Query: 575 LELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSE 634
           LELRVK A E E+  Q+RLA A+AEIA++R +L+  +R+++ L + +K K +E EA ++E
Sbjct: 599 LELRVKAAHETESACQERLATAKAEIAELRTQLDLSEREVLELKEGIKVKEQEAEASIAE 658

Query: 635 IETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQA 694
           +ETIGQ+Y+DMQTQNQ LLQQ+ ERDDYNIKLV E V+ +   +  L +K +ME ++ Q 
Sbjct: 659 METIGQAYEDMQTQNQHLLQQVAERDDYNIKLVSESVKTKHAYNTHLSEKQVMEKQLHQV 718

Query: 695 NASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSL 754
           NAS+  F  + A  E Q++ C  +A +L ++      +LE T+  ++D  K    ++ ++
Sbjct: 719 NASVENFKARIAHNEEQMKGCFSEAYKLIQEDRHLVISLETTKWEVADADKEFRWLKSAV 778

Query: 755 EESQSKVYKSRLTLMELQIELVKER 779
             S+ +  +      ++++EL  ER
Sbjct: 779 SSSEKEYEQISRRTDDIKLELDDER 803

E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q336R3|BRE1B_ORYSJ E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. japonica GN=BRE1B PE=2 SV=1

 Score =  337 bits (864), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 247/769 (32%), Positives = 417/769 (54%), Gaps = 49/769 (6%)

Query: 38  IDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLE 97
           +D A LQ++NQKLVQ+LE QK +  ALE KF +L++ Q  YD+TL  +NK W +LI DL 
Sbjct: 1   MDAAALQYENQKLVQQLEAQKSKMRALEGKFKELRDEQCSYDNTLICLNKMWNQLIDDLV 60

Query: 98  SCSMRARESSNGQES--RCLSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEED 155
              +RA    NG ++        E +   PS + FL RL+        ++ N  N     
Sbjct: 61  LLGVRAGGDLNGLQALDHEEMSEESLESCPSEEIFLFRLL--------NSRNFRN----- 107

Query: 156 RETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSN----------- 204
                    N  S++   V+    L+      ++K LQ+  + Q+A S            
Sbjct: 108 ---------NDDSSLSKLVEEALALRYSTTVTLMKSLQEAFAVQQARSESLSLALNGQNS 158

Query: 205 --------------LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGE 250
                         L+  V NLR A+  ++ KH+    E+++ ++  +++  ++  L GE
Sbjct: 159 SEDVIVALENHNDYLKEVVDNLRQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGE 218

Query: 251 LESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHK 310
           LE ++ ELEE   KLA L+ +            N  N  V+ D+  D+    RD++   +
Sbjct: 219 LEESMAELEESRRKLAVLQLQTGGGSLMNTSAPNGVNGSVSTDKSSDKGMGWRDLKDAVE 278

Query: 311 ELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEV 370
           E    A+++L EL    +  + + +QL ++Q+ LK    + +SK +  + +QL    +E+
Sbjct: 279 EAKTLAANRLFELHETQEDNLILSKQLEDIQDQLKDENYIVTSKPYTILSDQLHHLNAEI 338

Query: 371 FKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKN 430
            +Y+ L E LQ EKD L  +E E+  K + VD  ++S     +KI DL  EIQK + EKN
Sbjct: 339 ERYRGLVEVLQNEKDQLMQKEEEMLAKAESVDAVQQSITTYKAKIEDLEHEIQKLMAEKN 398

Query: 431 RIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSL 490
            +E++ EEA ++ G+K+   E   + +S  ++M  +  Q+++ K+AA +   LR +   L
Sbjct: 399 DLEIKAEEALQDSGKKDFKDEIHVMAASLSKEMELLDNQMNRSKDAASEALALREEADYL 458

Query: 491 TNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVL 550
             +L +K+ E + +      QV EI  L+A+++ L     EL+ I+DM  +E ++SR + 
Sbjct: 459 RTLLAKKIDEQKEISDRYNTQVTEIKSLKALIETLDQEKQELQFIVDMLGKECSESRAIS 518

Query: 551 AARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAF 610
              + E +A      L+  L+E +LELRVK A EAE   QQRL+ AEAE+ D+R K++A 
Sbjct: 519 EIEESENRARKQAEYLRKCLEEHNLELRVKAANEAETACQQRLSIAEAELEDLRAKVDAS 578

Query: 611 KRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEG 670
           +RD++ L ++++ K  E++ ++SEIETIGQ+Y+DMQTQNQ LLQQ+ +RDD+NIKLV + 
Sbjct: 579 ERDVMKLKESIRIKEAEVDGHISEIETIGQAYEDMQTQNQHLLQQVADRDDFNIKLVSDS 638

Query: 671 VRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNS 730
           V+ +Q   +LL +K+M++ ++Q  N+SL    +K    E Q++  + QA + + +    +
Sbjct: 639 VKMKQAYGSLLAEKNMLQKQLQHVNSSLESSKLKITSGEEQMKTYVAQAMKSSSENRHLA 698

Query: 731 ANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKER 779
            +LE T   +SD  K    +R +   ++ +   ++  + EL++EL +ER
Sbjct: 699 ISLERTMLEVSDAEKELKWLRSATGSAEKEYEINQKKIAELKMELERER 747

E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A2ZAC2|BRE1B_ORYSI E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. indica GN=BRE1B PE=3 SV=2

 Score =  337 bits (864), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 247/769 (32%), Positives = 417/769 (54%), Gaps = 49/769 (6%)

Query: 38  IDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLE 97
           +D A LQ++NQKLVQ+LE QK +  ALE KF +L++ Q  YD+TL  +NK W +LI DL 
Sbjct: 1   MDAAALQYENQKLVQQLEAQKSKMRALEGKFKELRDEQCSYDNTLICLNKMWNQLIDDLV 60

Query: 98  SCSMRARESSNGQES--RCLSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEED 155
              +RA    NG ++        E +   PS + FL RL+        ++ N  N     
Sbjct: 61  LLGVRAGGDLNGLQALDHEEMSEESLESCPSEEIFLFRLL--------NSRNFRN----- 107

Query: 156 RETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSN----------- 204
                    N  S++   V+    L+      ++K LQ+  + Q+A S            
Sbjct: 108 ---------NDDSSLSKLVEEALALRYSTTVTLMKSLQEAFAVQQARSESLSLALNGQNS 158

Query: 205 --------------LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGE 250
                         L+  V NLR A+  ++ KH+    E+++ ++  +++  ++  L GE
Sbjct: 159 SEDVIVALENHNDYLKEVVDNLRQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGE 218

Query: 251 LESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHK 310
           LE ++ ELEE   KLA L+ +            N  N  V+ D+  D+    RD++   +
Sbjct: 219 LEESMAELEESRRKLAVLQLQTGGGSLMNTSAPNGVNGSVSTDKSSDKGMGWRDLKDAVE 278

Query: 311 ELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEV 370
           E    A+++L EL    +  + + +QL ++Q+ LK    + +SK +  + +QL    +E+
Sbjct: 279 EAKTLAANRLFELHETQEDNLILSKQLEDIQDQLKDENYIVTSKPYTILSDQLHHLNAEI 338

Query: 371 FKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKN 430
            +Y+ L E LQ EKD L  +E E+  K + VD  ++S     +KI DL  EIQK + EKN
Sbjct: 339 ERYRGLVEVLQNEKDQLMQKEEEMLAKAESVDAVQQSITTYKAKIEDLEHEIQKLMAEKN 398

Query: 431 RIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSL 490
            +E++ EEA ++ G+K+   E   + +S  ++M  +  Q+++ K+AA +   LR +   L
Sbjct: 399 DLEIKAEEALQDSGKKDFKDEIHVMAASLSKEMELLDNQMNRSKDAASEALALREEADYL 458

Query: 491 TNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVL 550
             +L +K+ E + +      QV EI  L+A+++ L     EL+ I+DM  +E ++SR + 
Sbjct: 459 RTLLAKKIDEQKEISDRYNTQVTEIKSLKALIETLDQEKQELQFIVDMLGKECSESRAIS 518

Query: 551 AARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAF 610
              + E +A      L+  L+E +LELRVK A EAE   QQRL+ AEAE+ D+R K++A 
Sbjct: 519 EIEESENRARKQAEYLRKCLEEHNLELRVKAANEAETACQQRLSIAEAELEDLRAKVDAS 578

Query: 611 KRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEG 670
           +RD++ L ++++ K  E++ ++SEIETIGQ+Y+DMQTQNQ LLQQ+ +RDD+NIKLV + 
Sbjct: 579 ERDVMKLKESIRIKEAEVDGHISEIETIGQAYEDMQTQNQHLLQQVADRDDFNIKLVSDS 638

Query: 671 VRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNS 730
           V+ +Q   +LL +K+M++ ++Q  N+SL    +K    E Q++  + QA + + +    +
Sbjct: 639 VKMKQAYGSLLAEKNMLQKQLQHVNSSLESSKLKITSGEEQMKTYVAQAMKSSSENRHLA 698

Query: 731 ANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKER 779
            +LE T   +SD  K    +R +   ++ +   ++  + EL++EL +ER
Sbjct: 699 ISLERTMLEVSDAEKELKWLRSATGSAEKEYEINQKKIAELKMELERER 747

E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6.

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4R7K7|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 14/167 (8%)

Query: 518 LQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLEL 577
           L+A ++   +S  E+KL+LDMY+    + RD +     E KA A V  L+S + E     
Sbjct: 655 LRAELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRELEERD 714

Query: 578 RVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIET 637
           R ++   A+  + +R+  AE +I  +++KL A K              +E EA LSE++ 
Sbjct: 715 RRESKKIADGDALRRIRQAEEQIEHLQRKLGATK--------------QEEEALLSEMDV 760

Query: 638 IGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDK 684
            GQ+++DMQ QN +LLQQ+ E+DD N KL+ E ++A Q+   L  +K
Sbjct: 761 TGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEK 807

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes.

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O75150|BRE1B_HUMAN E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=4

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 14/167 (8%)

Query: 518 LQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLEL 577
           L+A ++   +S  E+KL+LDMY+    + RD +     E KA A V  L+S + E     
Sbjct: 655 LRAELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRELEERD 714

Query: 578 RVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIET 637
           R ++   A+  + +R+  AE +I  +++KL A K              +E EA LSE++ 
Sbjct: 715 RRESKKIADEDALRRIRQAEEQIEHLQRKLGATK--------------QEEEALLSEMDV 760

Query: 638 IGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDK 684
            GQ+++DMQ QN +LLQQ+ E+DD N KL+ E ++A Q+   L  +K
Sbjct: 761 TGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEK 807

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus GN=Rnf40 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 14/170 (8%)

Query: 515 IHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQS 574
           +  L+A ++   +S  E+KL+LDMY+    + RD +     E KA A V  L+S + +  
Sbjct: 653 LKGLRAELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRDLE 712

Query: 575 LELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSE 634
              R ++   A+  + +R+  AE +I  +++KL A K              +E EA LSE
Sbjct: 713 ERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGATK--------------QEEEALLSE 758

Query: 635 IETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDK 684
           ++  GQ+++DMQ QN +LLQQ+ E+DD N KL+ E ++A Q+   L  +K
Sbjct: 759 MDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEK 808

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5RAU7|BRE1B_PONAB E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii GN=RNF40 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 141/287 (49%), Gaps = 43/287 (14%)

Query: 518 LQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLEL 577
           L+A ++   +S  E+KL+LDMY+    + RD +     E KA A V  L+S + E     
Sbjct: 655 LRAELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRELEERD 714

Query: 578 RVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIET 637
           R ++   A+  + +R+  AE +I  +++KL A K              +E EA LSE++ 
Sbjct: 715 RRESKKIADEDALRRIRQAEEQIEHLQRKLGATK--------------QEEEALLSEMDV 760

Query: 638 IGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQ-------------------- 677
            GQ+++DMQ QN +LLQQ+ E+DD N KL+ E ++A Q+                     
Sbjct: 761 TGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQ 820

Query: 678 -DALLMDKHMMESEIQQANASLNFFD----MKAARIENQLRFCLDQAQRLAEDRSQNSAN 732
            DA L+    +E + +    SL   +    +++  +E   R  ++ AQ LAED       
Sbjct: 821 VDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQ-LAEDL---KVQ 876

Query: 733 LENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKER 779
           LE+ Q RL +++    + R + E+    + +++  +  L+ +L K+R
Sbjct: 877 LEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDISRLRRKLEKQR 923

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	779
297734578	878	unnamed protein product [Vitis vinifera]	0.998	0.886	0.693	0.0
225453456	901	PREDICTED: E3 ubiquitin-protein ligase B	0.998	0.863	0.674	0.0
224067588	877	histone ubiquitination proteins group [P	0.989	0.879	0.665	0.0
224136330	884	histone ubiquitination proteins group [P	0.951	0.838	0.638	0.0
356498180	874	PREDICTED: E3 ubiquitin-protein ligase B	0.992	0.884	0.629	0.0
356539611	873	PREDICTED: E3 ubiquitin-protein ligase B	0.991	0.884	0.629	0.0
449431978	878	PREDICTED: E3 ubiquitin-protein ligase B	1.0	0.887	0.612	0.0
357504631	947	E3 ubiquitin-protein ligase BRE1-like pr	0.998	0.821	0.554	0.0
297828217	878	histone mono-ubiquitination 1 [Arabidops	0.997	0.884	0.579	0.0
30689877	878	E3 ubiquitin-protein ligase BRE1-like 1	0.997	0.884	0.579	0.0

>gi|297734578|emb|CBI16629.3| unnamed protein product [Vitis vinifera]

 Score = 1056 bits (2732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/781 (69%), Positives = 646/781 (82%), Gaps = 3/781 (0%)

Query: 1   MGSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVE 60
           MGSTGEPDRKRRHFSS+SPTAATAKK PF P SE+KK+DTAVLQ+QNQKL QKLE QKVE
Sbjct: 1   MGSTGEPDRKRRHFSSLSPTAATAKKMPFLPVSEDKKLDTAVLQYQNQKLKQKLEAQKVE 60

Query: 61  YSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARES-SNGQESRCLSIIE 119
            SALENKF+QLKE QQ Y++TL +VNK+W EL+ +LE+CS+  ++S S G+  +  S  E
Sbjct: 61  CSALENKFSQLKETQQSYNTTLTLVNKTWRELVDNLETCSVHLKDSASAGRHVKLPSTTE 120

Query: 120 DVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWH 179
           D       DAFLSRL+ETGATES SA++  ++MEEDR T   +TKN +SNI++ +++LW 
Sbjct: 121 DGNS-CLQDAFLSRLIETGATESCSANDFSDRMEEDRPTSCGKTKNSLSNIVSTINDLWC 179

Query: 180 LKGGLYAAVLKDL-QDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDA 238
           LK GLYAAVL+ L +DG   +K SS+L +EV N+RLA  DLHLKHKS+TR++QS +DIDA
Sbjct: 180 LKDGLYAAVLEALPEDGLCNKKISSDLHAEVNNMRLAFGDLHLKHKSVTRDMQSHRDIDA 239

Query: 239 KDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDE 298
           K+KA+L RL+GELES V ELEE NCKL  L+AERD  KGAFFP+L+LG+K+VAGD+ RD+
Sbjct: 240 KNKAELKRLRGELESTVAELEESNCKLVTLKAERDAAKGAFFPILSLGSKNVAGDKARDK 299

Query: 299 QRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLS 358
           Q+DL DME+  KEL+DQ+S +LLELK L++ RI +L+QL NLQNTLK+VKC+SSS A++ 
Sbjct: 300 QKDLHDMEATLKELLDQSSSRLLELKALYEERIGILKQLSNLQNTLKNVKCISSSSAYVL 359

Query: 359 VKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADL 418
           V +QLEKSK+EV  YQALFEKLQVEKDNL WRE E+NMK D VDVFRRSS VTDS++++L
Sbjct: 360 VTDQLEKSKAEVVHYQALFEKLQVEKDNLVWREKEVNMKNDFVDVFRRSSVVTDSRLSEL 419

Query: 419 GIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAAL 478
            IEIQ QI+E+N IE++LEEASREPGRKEIIAEF+AL+SSFP++M  MQ QL KYKEAA 
Sbjct: 420 RIEIQNQINERNLIEIKLEEASREPGRKEIIAEFKALLSSFPDNMGTMQNQLRKYKEAAS 479

Query: 479 DIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDM 538
           D+H LRADV SL++VLERK KE ETL   SADQVA+I KLQA++QDL +S+++LKLIL+M
Sbjct: 480 DVHSLRADVQSLSSVLERKEKELETLSTRSADQVADIRKLQALIQDLEESDIQLKLILEM 539

Query: 539 YRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEA 598
           YR ES DSRDVL ARD EYKAWAHV SLKSSL+E SLELRVKTAIEAEA+SQQRLAAAEA
Sbjct: 540 YRCESVDSRDVLEARDKEYKAWAHVQSLKSSLNEHSLELRVKTAIEAEALSQQRLAAAEA 599

Query: 599 EIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITE 658
            I D+RQKLEA KRDM  LSD LKSK+EE EAYLSEIETIGQ+YDDMQTQNQ LLQQITE
Sbjct: 600 VIVDLRQKLEASKRDMFRLSDVLKSKHEENEAYLSEIETIGQAYDDMQTQNQHLLQQITE 659

Query: 659 RDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQ 718
           RDDYNIKLVLEGVR+RQLQD+LLM+K  ME   Q+A  SL FFDMKA RIE+QL+ C DQ
Sbjct: 660 RDDYNIKLVLEGVRSRQLQDSLLMEKQTMERGFQRATTSLGFFDMKAGRIEDQLKMCSDQ 719

Query: 719 AQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKE 778
            Q+LAEDR Q+   L N QKRL DV + S Q R SLEESQSKV KSR++L ELQIEL KE
Sbjct: 720 VQKLAEDRLQSLGTLANFQKRLLDVTRLSQQARESLEESQSKVDKSRVSLGELQIELEKE 779

Query: 779 R 779
           R
Sbjct: 780 R 780

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453456|ref|XP_002274055.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1-like [Vitis vinifera]

 Score = 1044 bits (2699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/804 (67%), Positives = 646/804 (80%), Gaps = 26/804 (3%)

Query: 1   MGSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVE 60
           MGSTGEPDRKRRHFSS+SPTAATAKK PF P SE+KK+DTAVLQ+QNQKL QKLE QKVE
Sbjct: 1   MGSTGEPDRKRRHFSSLSPTAATAKKMPFLPVSEDKKLDTAVLQYQNQKLKQKLEAQKVE 60

Query: 61  YSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARES-SNGQESRCLSIIE 119
            SALENKF+QLKE QQ Y++TL +VNK+W EL+ +LE+CS+  ++S S G+  +  S  E
Sbjct: 61  CSALENKFSQLKETQQSYNTTLTLVNKTWRELVDNLETCSVHLKDSASAGRHVKLPSTTE 120

Query: 120 DVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWH 179
           D       DAFLSRL+ETGATES SA++  ++MEEDR T   +TKN +SNI++ +++LW 
Sbjct: 121 DGNS-CLQDAFLSRLIETGATESCSANDFSDRMEEDRPTSCGKTKNSLSNIVSTINDLWC 179

Query: 180 LKGGLYAAVLKDL-QDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDA 238
           LK GLYAAVL+ L +DG   +K SS+L +EV N+RLA  DLHLKHKS+TR++QS +DIDA
Sbjct: 180 LKDGLYAAVLEALPEDGLCNKKISSDLHAEVNNMRLAFGDLHLKHKSVTRDMQSHRDIDA 239

Query: 239 KDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDE 298
           K+KA+L RL+GELES V ELEE NCKL  L+AERD  KGAFFP+L+LG+K+VAGD+ RD+
Sbjct: 240 KNKAELKRLRGELESTVAELEESNCKLVTLKAERDAAKGAFFPILSLGSKNVAGDKARDK 299

Query: 299 QRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLS 358
           Q+DL DME+  KEL+DQ+S +LLELK L++ RI +L+QL NLQNTLK+VKC+SSS A++ 
Sbjct: 300 QKDLHDMEATLKELLDQSSSRLLELKALYEERIGILKQLSNLQNTLKNVKCISSSSAYVL 359

Query: 359 VKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADL 418
           V +QLEKSK+EV  YQALFEKLQVEKDNL WRE E+NMK D VDVFRRSS VTDS++++L
Sbjct: 360 VTDQLEKSKAEVVHYQALFEKLQVEKDNLVWREKEVNMKNDFVDVFRRSSVVTDSRLSEL 419

Query: 419 GIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAAL 478
            IEIQ QI+E+N IE++LEEASREPGRKEIIAEF+AL+SSFP++M  MQ QL KYKEAA 
Sbjct: 420 RIEIQNQINERNLIEIKLEEASREPGRKEIIAEFKALLSSFPDNMGTMQNQLRKYKEAAS 479

Query: 479 DIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAM----------------- 521
           D+H LRADV SL++VLERK KE ETL   SADQVA+I KLQA+                 
Sbjct: 480 DVHSLRADVQSLSSVLERKEKELETLSTRSADQVADIRKLQALLTLKLPTYHKAKGRGGV 539

Query: 522 ------VQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSL 575
                 +QDL +S+++LKLIL+MYR ES DSRDVL ARD EYKAWAHV SLKSSL+E SL
Sbjct: 540 KYTFVQIQDLEESDIQLKLILEMYRCESVDSRDVLEARDKEYKAWAHVQSLKSSLNEHSL 599

Query: 576 ELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEI 635
           ELRVKTAIEAEA+SQQRLAAAEA I D+RQKLEA KRDM  LSD LKSK+EE EAYLSEI
Sbjct: 600 ELRVKTAIEAEALSQQRLAAAEAVIVDLRQKLEASKRDMFRLSDVLKSKHEENEAYLSEI 659

Query: 636 ETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQAN 695
           ETIGQ+YDDMQTQNQ LLQQITERDDYNIKLVLEGVR+RQLQD+LLM+K  ME   Q+A 
Sbjct: 660 ETIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRSRQLQDSLLMEKQTMERGFQRAT 719

Query: 696 ASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLE 755
            SL FFDMKA RIE+QL+ C DQ Q+LAEDR Q+   L N QKRL DV + S Q R SLE
Sbjct: 720 TSLGFFDMKAGRIEDQLKMCSDQVQKLAEDRLQSLGTLANFQKRLLDVTRLSQQARESLE 779

Query: 756 ESQSKVYKSRLTLMELQIELVKER 779
           ESQSKV KSR++L ELQIEL KER
Sbjct: 780 ESQSKVDKSRVSLGELQIELEKER 803

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067588|ref|XP_002302510.1| histone ubiquitination proteins group [Populus trichocarpa] gi|222844236|gb|EEE81783.1| histone ubiquitination proteins group [Populus trichocarpa]

 Score =  988 bits (2555), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/787 (66%), Positives = 623/787 (79%), Gaps = 16/787 (2%)

Query: 1   MGSTGEPDRKRRHFSSIS-PTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKV 59
           MGSTGEPDRKRRHFSSIS P AA AKK P         +DT VLQ+QNQKL QKLE QKV
Sbjct: 1   MGSTGEPDRKRRHFSSISSPPAAMAKKQP--------ALDTTVLQYQNQKLQQKLEAQKV 52

Query: 60  EYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIE 119
           E+ AL N+F+QLKE+QQPY+STL  VNKSWE L++DLE+CS R RE SNGQ+ + + + +
Sbjct: 53  EHFALGNRFSQLKEKQQPYNSTLNAVNKSWEVLVSDLETCSNRTREWSNGQDVKHIPVTK 112

Query: 120 DVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWH 179
           D +     DAFLSRLMETGATESSS++NCP+QME D ET   + KN+V NI+  ++ LWH
Sbjct: 113 DESSSFLKDAFLSRLMETGATESSSSNNCPDQMEVDIETAFEKNKNVVHNIVDTINGLWH 172

Query: 180 LKGGLYAAVLKDL-QDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDA 238
           LK GL+AAVLK L +D   +Q  S+ L+ E+KNLR  L DLHLKHKSL  ELQ+ +D DA
Sbjct: 173 LKDGLHAAVLKQLPEDDACRQMTSNELEMELKNLRSGLSDLHLKHKSLAMELQNHRDADA 232

Query: 239 KDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDE 298
           K+KA+L  LKGELE AV EL++ NCKLA L+AERD TKGAFFPVLNLG+KH+ GD+VRD+
Sbjct: 233 KNKAELKHLKGELEIAVAELKDSNCKLATLKAERDATKGAFFPVLNLGSKHIGGDKVRDK 292

Query: 299 QRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLS 358
           Q+DL++MES  KEL+DQAS +L ELK LH+ R+K+LQ+L NLQN LK+VK +SSS+A+L 
Sbjct: 293 QKDLQEMESAVKELLDQASSRLQELKDLHEERLKILQKLSNLQNLLKNVKSISSSQAYLL 352

Query: 359 VKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADL 418
           V++QLEKSKSEV +Y+AL EKLQVEKDNL W+E ELN+K DLVDV RRS+AV DS+IA L
Sbjct: 353 VRDQLEKSKSEVLQYRALIEKLQVEKDNLVWKERELNVKNDLVDVCRRSTAVVDSRIAVL 412

Query: 419 GIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAAL 478
           G EIQKQI+E+N IE +LEEASREPGRKEIIAEF+ALVSSFPE+MS+MQRQLS  K+A+ 
Sbjct: 413 GKEIQKQINERNMIETKLEEASREPGRKEIIAEFKALVSSFPEEMSSMQRQLSNSKDASS 472

Query: 479 DIHILRADVLSLTNVLERKVKE--CETLLASSADQVAEIH----KLQAMVQDLTDSNLEL 532
           DIH LRAD  SL+ VL+RKV    C  L +    Q+   +    +    VQDL +S LEL
Sbjct: 473 DIHSLRADGQSLSTVLDRKVGTFWCMPLYSFPLIQLMGTNICFSETGQRVQDLKESELEL 532

Query: 533 KLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQR 592
           KLILDMYR EST SRDVL ARDLEY+A A V S KSSLDE +LE RVKTA EAEA SQQR
Sbjct: 533 KLILDMYRGESTYSRDVLEARDLEYEARAQVQSFKSSLDEHNLESRVKTANEAEARSQQR 592

Query: 593 LAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQL 652
           LAAAEAEIAD+RQKLEA KRDM  LSD LKSKNE  EAYLSEIETIGQ+YDDMQTQNQ L
Sbjct: 593 LAAAEAEIADLRQKLEASKRDMSRLSDVLKSKNEGNEAYLSEIETIGQAYDDMQTQNQHL 652

Query: 653 LQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQL 712
           LQQITERDDYNIKLVLEGVRARQ+  +LLMDK +ME EIQQAN SLN F +KAARIE+Q 
Sbjct: 653 LQQITERDDYNIKLVLEGVRARQMHGSLLMDKQIMEKEIQQANISLNLFYVKAARIEDQS 712

Query: 713 RFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQ 772
           +FC DQ  +L ED+ Q S  LENTQK+L D+ +SS Q R SLE+SQS+V +S+  L+EL+
Sbjct: 713 KFCSDQVHKLVEDKIQRSVTLENTQKKLLDMGRSSSQARESLEDSQSRVERSQSALLELR 772

Query: 773 IELVKER 779
           I+L KER
Sbjct: 773 IDLEKER 779

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136330|ref|XP_002326834.1| histone ubiquitination proteins group [Populus trichocarpa] gi|222835149|gb|EEE73584.1| histone ubiquitination proteins group [Populus trichocarpa]

 Score =  971 bits (2509), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/799 (63%), Positives = 614/799 (76%), Gaps = 58/799 (7%)

Query: 38  IDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLE 97
           +DTAVLQ+QNQKL QKLE QKVE+SALENKF+  KE+Q+PY+STLK VNKSWE L+TDLE
Sbjct: 18  LDTAVLQYQNQKLQQKLEAQKVEHSALENKFSLQKEKQKPYNSTLKAVNKSWEVLVTDLE 77

Query: 98  SCSMRARESSNGQESRCLSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRE 157
           +CS R RE  NGQ+ + + I  D       DAFLSRLMETGATESSSA NCP+QME DRE
Sbjct: 78  TCSNRTREWINGQDVKHVPIARDGGSSSLKDAFLSRLMETGATESSSATNCPDQMEVDRE 137

Query: 158 TGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGG--------------------- 196
           T   + K I  N++A ++ LW+LK GL AAVLK L + G                     
Sbjct: 138 TAFEKNKRIAHNLVATINGLWYLKDGLRAAVLKQLTEDGRSILPQVSVLYLSWATSFRVF 197

Query: 197 ------------SKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKL 244
                        ++  S+ L++E+KNLRL L DLHLKHKSL RELQ+ +D DAK+KA+L
Sbjct: 198 SVPMYVSPLLDACRETISNELETELKNLRLGLSDLHLKHKSLARELQNHRDSDAKNKAEL 257

Query: 245 NRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRD 304
             LKGELE+ V EL + NCKLA L+AER+ TKGAFFPVLN+G+KH AGD+VRD+Q+DL++
Sbjct: 258 KHLKGELETTVAELNDSNCKLATLKAERNATKGAFFPVLNMGSKHAAGDQVRDKQKDLQE 317

Query: 305 MESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLE 364
           MES  KEL+DQAS +L ELK LH+ R+K+LQ+L NLQN LK+VK +SSS+A+L V++QLE
Sbjct: 318 MESAVKELLDQASSRLQELKDLHEERLKILQKLSNLQNLLKNVKSISSSRAYLLVRDQLE 377

Query: 365 KSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQK 424
           KSKS V  Y+ALFEKLQVEKDNL W+E ELNMK DLVDV RRS+AV DS++ADLG EIQK
Sbjct: 378 KSKSMVLHYRALFEKLQVEKDNLVWKERELNMKNDLVDVCRRSTAVVDSRVADLGKEIQK 437

Query: 425 QIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILR 484
           QI+E+N IE  LEE+SREPGRK++IAEF+ALVSSFPE+M +MQ QLS +KEA+ DIH LR
Sbjct: 438 QINERNMIETNLEESSREPGRKDVIAEFKALVSSFPEEMGSMQSQLSNFKEASSDIHSLR 497

Query: 485 ADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAM----------------------- 521
           ADV SL+ VL+RK K+C +L + S  Q+AEIHKLQ++                       
Sbjct: 498 ADVQSLSTVLDRKGKQCGSLSSRSTSQIAEIHKLQSVKYYITDKFKCNLWSDNHLTRSAG 557

Query: 522 --VQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRV 579
             VQDL ++ LELKLILDMY+REST SRDVL ARDLEYKAWA V S K SLDEQ+LELRV
Sbjct: 558 TRVQDLNENILELKLILDMYQRESTYSRDVLEARDLEYKAWAQVQSFKFSLDEQNLELRV 617

Query: 580 KTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIG 639
           KTA EAEAISQQ+LAAAEAEIAD+RQKLEA K DM  LSD L+SKNEE EAYLSEIETIG
Sbjct: 618 KTANEAEAISQQKLAAAEAEIADLRQKLEASKMDMSRLSDVLESKNEENEAYLSEIETIG 677

Query: 640 QSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLN 699
           Q+YD+MQTQNQ LLQQ+TERDDYNIKLVLEGVRARQL+D+LLMDK  ME EIQQAN S++
Sbjct: 678 QAYDEMQTQNQHLLQQVTERDDYNIKLVLEGVRARQLRDSLLMDKQTMEKEIQQANISVD 737

Query: 700 FFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQS 759
           FFD+KAARIE+QL+ C DQ  +LAED+ Q S  LENTQK+L D+R+SS Q R SLE+SQS
Sbjct: 738 FFDVKAARIEDQLKNCSDQVHKLAEDKFQRSVMLENTQKKLLDLRRSSNQARESLEDSQS 797

Query: 760 KVYKSRLTLMELQIELVKE 778
           +V +SR  L+E+QI+L KE
Sbjct: 798 RVERSRAALLEVQIDLEKE 816

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498180|ref|XP_003517931.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1-like [Glycine max]

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/782 (62%), Positives = 614/782 (78%), Gaps = 9/782 (1%)

Query: 1   MGSTGEPDRKRRHFSSISPT--AATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQK 58
           MGS  + DRKRRHFSS+SPT  AA AKK PF P      +D  VLQ+QNQKL QKLETQK
Sbjct: 1   MGSMSDSDRKRRHFSSLSPTPAAAIAKKLPFLP------LDIVVLQYQNQKLTQKLETQK 54

Query: 59  VEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSII 118
           +EY+ LEN+F+ LKERQ+ YDSTL+VV KSWE+L+ DLE CS R RESS+   SR  SI+
Sbjct: 55  LEYAGLENRFSHLKERQKSYDSTLEVVKKSWEQLVDDLELCSERTRESSSKTNSRFASIM 114

Query: 119 EDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLW 178
           ED +P    D FLSRLM+T ATE +S+ N  NQMEE RE  I + K+I+ N++ AV+NLW
Sbjct: 115 EDGSPSTVQDVFLSRLMQTDATECASSYNFANQMEEHREITIEKAKSILKNMVTAVNNLW 174

Query: 179 HLKGGLYAAVLKDLQ-DGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDID 237
            L  GL+ A+LK L  D   +QK SS+L+  VKNLRL   +LHLKHKSL  E   ++ +D
Sbjct: 175 VLMDGLHTALLKKLPGDDLCRQKLSSDLEVIVKNLRLEFSELHLKHKSLASEFLIQRGLD 234

Query: 238 AKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRD 297
           AK+KA L RLKGEL + VKELEE N KLA L+AERD  KGA  PVLN+G+ H+  D+++D
Sbjct: 235 AKNKADLERLKGELANTVKELEEINHKLATLKAERDAAKGAVLPVLNVGSTHIPSDKIKD 294

Query: 298 EQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFL 357
           +Q+DL+DMES  KEL+DQ S +L++LK LH+ RI++LQQL +LQNTLK++KC++SS AF 
Sbjct: 295 KQKDLQDMESTLKELLDQGSARLMDLKSLHEERIRILQQLCDLQNTLKNLKCITSSHAFQ 354

Query: 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIAD 417
            VK+Q+EKSKS+V +YQAL+EKLQ EKDNLAWRE E  +K D  DVF+RS AV++ ++AD
Sbjct: 355 LVKDQIEKSKSDVLEYQALYEKLQFEKDNLAWREREWYIKNDFADVFQRSVAVSEFRVAD 414

Query: 418 LGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAA 477
           L  EIQK+I+E+N IE +L+E +REPGRK+IIAEF++LVSSFP++M +MQ QL KYKE+A
Sbjct: 415 LRSEIQKKIEERNVIENKLKEEAREPGRKQIIAEFKSLVSSFPDEMGSMQSQLRKYKESA 474

Query: 478 LDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILD 537
            DIH LRADV S++++L+RKVKEC+     S   VAEI +L  +VQDL +S  +L+LIL+
Sbjct: 475 SDIHSLRADVKSVSSILDRKVKECDVFSVRSVGLVAEIKRLLGVVQDLRESEWDLQLILE 534

Query: 538 MYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAE 597
           M+RRES DSRDV+ AR+ EY+AWAHV SLKSSLDE +LE RVKTA EAEA SQQ+LAAAE
Sbjct: 535 MFRRESIDSRDVMDAREAEYRAWAHVQSLKSSLDEHNLEHRVKTANEAEARSQQKLAAAE 594

Query: 598 AEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT 657
           AEIADMRQKL   KR M  LSD LKSKN++ E YLSEIE+IGQ+YDDMQTQNQ LLQQIT
Sbjct: 595 AEIADMRQKLADSKRQMCDLSDVLKSKNKQNENYLSEIESIGQAYDDMQTQNQHLLQQIT 654

Query: 658 ERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLD 717
           ERDDYNIKLVLEGVRARQ QD+LLM+K ++E EIQQAN SLN +D+KA RIE+QL+FCLD
Sbjct: 655 ERDDYNIKLVLEGVRARQKQDSLLMEKRVIEQEIQQANISLNLYDVKATRIEDQLKFCLD 714

Query: 718 QAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVK 777
           Q Q+LAED+ Q+S  LENTQ+RLS+VR+ S QV   + E QSK+  +R+T MELQ+EL K
Sbjct: 715 QLQKLAEDKLQSSVTLENTQRRLSNVRRQSQQVTDMVVEMQSKIGSNRVTRMELQVELEK 774

Query: 778 ER 779
           ER
Sbjct: 775 ER 776

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539611|ref|XP_003538290.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1-like [Glycine max]

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/782 (62%), Positives = 610/782 (78%), Gaps = 10/782 (1%)

Query: 1   MGSTGEPDRKRRHFSSISPT--AATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQK 58
           MGS  + DRKRRHFSS+SPT  AATAKK PF P      +D  VLQ+QNQKL QKLETQK
Sbjct: 1   MGSMNDSDRKRRHFSSLSPTPAAATAKKLPFLP------LDIVVLQYQNQKLTQKLETQK 54

Query: 59  VEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSII 118
           +EY+ LEN+F+ LKE Q+ YDSTL VV KSWE+L+ DLE CS R RESS    SR  SI+
Sbjct: 55  LEYAGLENRFSLLKESQKSYDSTLAVVKKSWEQLVDDLELCSERTRESSRKINSRFASIM 114

Query: 119 EDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLW 178
           ED +P    D FLSRLM+T ATE +S  N  NQMEE RE    + K+I+ N++ AV+NLW
Sbjct: 115 EDGSPSTVQDVFLSRLMQTDATECASTYNFANQMEEHREITTEKAKSILKNMVTAVNNLW 174

Query: 179 HLKGGLYAAVLKDLQDGG-SKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDID 237
            L  GL+ A LK L  G   +QK SS+L+  VKNLRL   +LH KHKSL  E Q ++D++
Sbjct: 175 VLMDGLHTAFLKKLPGGDLCRQKLSSDLEVIVKNLRLEFSELHSKHKSLASEFQIQRDLN 234

Query: 238 AKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRD 297
           AK+KA L RLKGEL S VKELEE N KLA L+AERD  KG   P+LN+G+ H+  D+++D
Sbjct: 235 AKNKADLERLKGELASTVKELEESNHKLATLKAERDAAKGVL-PLLNVGSTHIPSDKIKD 293

Query: 298 EQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFL 357
           +Q+DL+DMES  KEL+DQ S +L+ELK LH+ RI++LQQL +LQNTLK++KC++SS AF 
Sbjct: 294 KQKDLQDMESTLKELLDQGSARLMELKSLHEERIRILQQLCDLQNTLKNLKCITSSHAFQ 353

Query: 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIAD 417
            V++Q+EKSK+EV +YQAL+EKLQVEKDNLAWRE E  +K DL DVF+RS AV+D ++AD
Sbjct: 354 LVRDQIEKSKAEVLEYQALYEKLQVEKDNLAWREREWYIKNDLADVFQRSVAVSDFRVAD 413

Query: 418 LGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAA 477
           L  EIQK+I+E+  IE +L+E +R PGRK+IIAEF++LVSSFP++M +MQ QL KYKE+A
Sbjct: 414 LRFEIQKKIEERYVIENKLKEEARGPGRKQIIAEFKSLVSSFPDEMGSMQIQLRKYKESA 473

Query: 478 LDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILD 537
            DIH LRADV S++++L+RKVKEC+     SA Q+AEI +L  +VQDL +S  +LKLIL 
Sbjct: 474 SDIHSLRADVKSVSSILDRKVKECDVFSVRSAGQLAEIKRLLGVVQDLRESERDLKLILV 533

Query: 538 MYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAE 597
           M+RRES DSR V+ AR+ EY+AWA V SLKSSLDE +LE RVKTA EAEA SQQ+LA AE
Sbjct: 534 MFRRESIDSRVVMDAREAEYRAWARVQSLKSSLDEHNLEHRVKTANEAEARSQQKLATAE 593

Query: 598 AEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT 657
           AEIADMRQKLE  KR M  LSD LKSKN++ E Y+SEIE+IGQ+YDDMQTQNQ LLQQIT
Sbjct: 594 AEIADMRQKLEDSKRQMCDLSDVLKSKNKQNENYMSEIESIGQAYDDMQTQNQHLLQQIT 653

Query: 658 ERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLD 717
           ERDDYNIKLVLEGVRARQ QD+LLM+K ++E EIQQAN SLN +D+KA RIE+QL+FCLD
Sbjct: 654 ERDDYNIKLVLEGVRARQKQDSLLMEKRVIEHEIQQANISLNVYDVKATRIEDQLKFCLD 713

Query: 718 QAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVK 777
           Q Q+LAED+ Q+S  LENTQ+RLSDVR+ S QVR ++ E QSK+  +R+T MELQ+EL K
Sbjct: 714 QLQKLAEDKLQSSVTLENTQRRLSDVRRQSQQVRDTVVEMQSKIGSNRVTCMELQVELEK 773

Query: 778 ER 779
           ER
Sbjct: 774 ER 775

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431978|ref|XP_004133777.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1-like [Cucumis sativus] gi|449478010|ref|XP_004155194.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1-like [Cucumis sativus]

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/780 (61%), Positives = 599/780 (76%), Gaps = 1/780 (0%)

Query: 1   MGSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVE 60
           MGST E DRKRRHFS+ISPTAATAKK PF P SE+KK+D AVLQ+QNQKL+QKLE QKVE
Sbjct: 1   MGSTVESDRKRRHFSTISPTAATAKKAPFLPVSEDKKLDVAVLQYQNQKLIQKLEVQKVE 60

Query: 61  YSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIED 120
           Y +L+NK+AQLKE+Q+PYD+T+ VV   WEEL+  LE+ S+R R   + ++        D
Sbjct: 61  YKSLQNKYAQLKEKQEPYDTTVAVVKNCWEELVNGLETSSVRMRRWRSKRDGEHTIAGVD 120

Query: 121 VTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHL 180
            +     DA LSRL ETGAT+SSS  +    MEE+ E+   +TK I  +I  +++NLW+L
Sbjct: 121 GSSSSFEDAVLSRLAETGATQSSSTYSSSKHMEEETESPCEKTKTIERSIETSIENLWYL 180

Query: 181 KGGLYAAVLKDL-QDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAK 239
           K GL+A +L +L +D   +++ S +L  EV+N+RL + D   K K L +EL+  +D+DAK
Sbjct: 181 KDGLHATLLNELPKDDSFRKRTSGDLVKEVRNMRLRVKDFLFKQKVLAQELEKHRDLDAK 240

Query: 240 DKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQ 299
            KA+L  LK EL SAV ELEE N KL  LRAE D  K A FPVLNL  KH A  +VRD+Q
Sbjct: 241 TKAELKVLKVELGSAVAELEESNSKLTKLRAEHDAAKKAGFPVLNLTGKHSASGKVRDKQ 300

Query: 300 RDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSV 359
           +DLRDMES  KEL DQA  +L EL  LH+GR+K+L++L ++QNT+KSVK +SSSK +L +
Sbjct: 301 KDLRDMESSLKELKDQAVDRLAELNSLHEGRLKMLRRLSDIQNTMKSVKTISSSKPYLLL 360

Query: 360 KNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLG 419
           ++++EK K EV + QALFEKLQVEKDN+ W+E ELN+K +++DV RRSS V+D++I DL 
Sbjct: 361 RDRIEKLKLEVNEQQALFEKLQVEKDNIMWKEKELNIKNNILDVLRRSSTVSDTRINDLE 420

Query: 420 IEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALD 479
           I IQKQ D K  IE +L E  +EPGRK+I++EFRALVSSFPE M +MQ QL KYKEAA D
Sbjct: 421 ILIQKQKDGKQSIENKLVEVLKEPGRKKIVSEFRALVSSFPEAMGSMQSQLHKYKEAASD 480

Query: 480 IHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMY 539
           +H +RAD+ SL+++++R  KECE L + S DQ AEI KLQA VQDLT+ N ELKLI+DMY
Sbjct: 481 VHSVRADLQSLSSIIDRMEKECENLSSRSKDQQAEIQKLQATVQDLTEVNRELKLIIDMY 540

Query: 540 RRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAE 599
            REST+SR+VL ARDLEYKAWA V SLKSSLDE++LE RVKTA EAEAISQQRLAAAEAE
Sbjct: 541 SRESTESREVLEARDLEYKAWARVQSLKSSLDERNLESRVKTANEAEAISQQRLAAAEAE 600

Query: 600 IADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITER 659
           IA +RQKLEA KRD+  LSD LKSK +E  AYLSEIETIGQ+YDDMQTQNQ LLQQITER
Sbjct: 601 IARLRQKLEASKRDLTRLSDVLKSKGDENVAYLSEIETIGQAYDDMQTQNQHLLQQITER 660

Query: 660 DDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQA 719
           DDYNIKLVLEGVRARQLQ+ +L++K  +E+E+QQANASL  ++MKAARIE+QLR C D  
Sbjct: 661 DDYNIKLVLEGVRARQLQEIMLIEKQALENEVQQANASLVLYEMKAARIEDQLRGCSDHI 720

Query: 720 QRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKER 779
           Q++ ED+ +++  LENT+KRL ++R +S Q R SL+E QSKV +SR T  ELQIEL KER
Sbjct: 721 QKIEEDKLRDTDTLENTRKRLLEIRIASQQTRESLDECQSKVERSRTTQAELQIELEKER 780

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357504631|ref|XP_003622604.1| E3 ubiquitin-protein ligase BRE1-like protein [Medicago truncatula] gi|355497619|gb|AES78822.1| E3 ubiquitin-protein ligase BRE1-like protein [Medicago truncatula]

 Score =  874 bits (2258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/850 (55%), Positives = 614/850 (72%), Gaps = 72/850 (8%)

Query: 1   MGSTGEPDRKRRHFSSISPTAATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVE 60
           MGS GE DRKRR FSS+SPT ATAKK PF P SE+KK+D AVLQ+QNQKL QKLETQK+E
Sbjct: 1   MGSMGEHDRKRR-FSSLSPTPATAKKLPFLPVSEDKKLDIAVLQYQNQKLTQKLETQKLE 59

Query: 61  YSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESR------- 113
           Y+ALENKF+QLKE+QQ YDSTL VV KSWE+L+ DLESCS   RESS+  +SR       
Sbjct: 60  YAALENKFSQLKEKQQSYDSTLAVVKKSWEQLVNDLESCSEHIRESSSKVDSRFASSTDG 119

Query: 114 --------CLSIIEDVT------PHPS----HDAFLSRLMETGATESSSADNCPNQMEED 155
                   C +   +++      P+ S     D FLSRL++TGATESSS+ +  N+ E+ 
Sbjct: 120 TLFASEFICQNYFTEISVLGVDYPYGSSSTVQDVFLSRLLQTGATESSSSYHFANETEQH 179

Query: 156 RETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQ-DGGSKQKASSNLQSEVKNLRL 214
           RE    + K+I++NI+ +++N   LK G +  +LK L+ D    Q  S++L+ E KNLRL
Sbjct: 180 REITAEKAKSILNNIVTSINNFQCLKDGFHTVLLKKLRGDVSCGQMLSNDLEVESKNLRL 239

Query: 215 ALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDV 274
           AL +LHLKHKSL  + ++ +D+DAK+KA+L RLKGELES V ELEE N KLA L+ E+D 
Sbjct: 240 ALSELHLKHKSLASDFRTHRDLDAKNKAELKRLKGELESTVAELEESNQKLATLKVEKDT 299

Query: 275 TKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRI--- 331
            KGA  PVL +GN  +  D+++D+Q+DL+DMES  K+L+DQAS + +ELK LH+ RI   
Sbjct: 300 AKGAVLPVLAVGNTLIPNDKIKDKQKDLQDMESTLKDLLDQASTRAVELKNLHEERIRLL 359

Query: 332 --------KVLQQLYNLQ-----------------------NTLKSVKCLSSSKAFLSVK 360
                   K  ++ +  Q                       NTLK++KC++SS AF  V+
Sbjct: 360 QQLCDLQLKTFRKCWTGQKMQKVTGKRGWSDSAMEGKLSHENTLKNLKCITSSHAFQLVR 419

Query: 361 NQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGI 420
           +Q EKSKSEV +YQAL+EKLQ EKD+L WRE E  +K DL D+F+RS  V+D K+AD+  
Sbjct: 420 DQTEKSKSEVQEYQALYEKLQAEKDSLTWREREWYIKNDLADLFQRSVEVSDLKVADIRT 479

Query: 421 EIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDI 480
           E++K I++++ IE +L+E +REPGRKEIIAEF++L+SSFPE+M +MQ QLSKYKE+A DI
Sbjct: 480 ELRKTIEQRDVIENKLKEEAREPGRKEIIAEFKSLLSSFPEEMGSMQSQLSKYKESASDI 539

Query: 481 HILRADVLSLTNVLERKV-----------KECETLLASSADQVAEIHKLQAMVQDLTDSN 529
           H LRADV S++++L++KV           KEC+ L   SA Q+AEI++L A+VQDL  + 
Sbjct: 540 HSLRADVHSISSILDQKVGFCLYELYFLVKECDALSVRSAGQLAEINRLLAVVQDLRVTE 599

Query: 530 LELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAIS 589
            E+KLIL M+RRE+ DSRDV+ AR+ EY AWAHV +LKSSLDE +LELRVKTA E+EA S
Sbjct: 600 DEMKLILRMFRRETIDSRDVMEAREAEYIAWAHVQTLKSSLDEHNLELRVKTANESEARS 659

Query: 590 QQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQN 649
           QQ+LAAAEAEIADMR  L+  KR     SD ++SKNEE EAYLSEIETIGQ+YDDMQTQN
Sbjct: 660 QQKLAAAEAEIADMRHNLDDSKRATCKQSDVMRSKNEENEAYLSEIETIGQAYDDMQTQN 719

Query: 650 QQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIE 709
           Q LL QITERDDYNIKLVLEGVRARQ QD+ +M+  +ME E+QQ+N SLN ++ KAA+IE
Sbjct: 720 QHLLHQITERDDYNIKLVLEGVRARQKQDSFIMEMRLMEQEMQQSNVSLNLYNTKAAKIE 779

Query: 710 NQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLM 769
           +Q+RFC DQ Q+L +++ Q+S +LENTQ+RLSD+R SS QVR ++ E QSK+  SR+T M
Sbjct: 780 DQMRFCSDQIQKLVDNKLQSSVDLENTQRRLSDIRPSSQQVRNTVVEVQSKITSSRVTHM 839

Query: 770 ELQIELVKER 779
           EL ++L KER
Sbjct: 840 ELLVDLEKER 849

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828217|ref|XP_002881991.1| histone mono-ubiquitination 1 [Arabidopsis lyrata subsp. lyrata] gi|297327830|gb|EFH58250.1| histone mono-ubiquitination 1 [Arabidopsis lyrata subsp. lyrata]

 Score =  842 bits (2174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/782 (57%), Positives = 580/782 (74%), Gaps = 5/782 (0%)

Query: 1   MGSTGEPDRKRRHFSSISPT--AATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQK 58
           M STGEPDRKRRHFSSISP+  AA  KK PFF  S E K+DTAVLQFQN +L QKLE Q+
Sbjct: 1   MASTGEPDRKRRHFSSISPSEAAAAVKKQPFFWPSSEDKLDTAVLQFQNLQLSQKLEAQQ 60

Query: 59  VEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSII 118
           VE S LE+K +Q+KE+Q PY S+LK V+KSWE+L   +ESCS+R  +SS+G   R ++  
Sbjct: 61  VECSILEDKLSQIKEKQLPYSSSLKTVHKSWEKLTATVESCSVRVSDSSSGAH-RFVNKE 119

Query: 119 EDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLW 178
           +  +P   +D F++RL+ETGATESSS++ C N+MEE+      +    +SN++AA D+L 
Sbjct: 120 DGSSPAVKND-FINRLLETGATESSSSNICSNRMEENGVNTSSQMTQTLSNLVAATDDLR 178

Query: 179 HLKGGLYAAVLK-DLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDID 237
            LK  LY  VL+  L      Q A S L+SE+K+ R  L D+ +K KSL+RELQS +D D
Sbjct: 179 CLKDDLYPTVLRTSLGKDLCGQLALSELESEIKSFRGDLDDVLVKFKSLSRELQSHRDAD 238

Query: 238 AKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRD 297
           AK +A L R++GELE  V EL++CN  L+ALRAERD T GAFFPVL+LGNK    DR RD
Sbjct: 239 AKVRADLKRIRGELEDEVVELQQCNGDLSALRAERDATAGAFFPVLSLGNKLATSDRERD 298

Query: 298 EQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFL 357
           +QRDL DME+V KEL   AS +L ELK LH+ R K+L+++ NLQN  KSV+C+SSS+A L
Sbjct: 299 KQRDLHDMETVLKELTVLASGRLQELKDLHEERTKMLEKMSNLQNKSKSVRCISSSQACL 358

Query: 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIAD 417
           S+K+QL+KSK  VF+Y AL EKLQVEKD++ W+E E+N+K +LVDV RR+SAV DS++A 
Sbjct: 359 SLKDQLKKSKEAVFQYMALLEKLQVEKDSIVWKEREMNIKNELVDVSRRTSAVADSRMAS 418

Query: 418 LGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAA 477
           L   IQKQ+DEK RI+ RL   SRE GRKEI A+ +AL+SSFPE+MS+M+ QL  YKE A
Sbjct: 419 LDSVIQKQLDEKMRIKTRLGNISRERGRKEIFADMKALISSFPEEMSSMRNQLDNYKETA 478

Query: 478 LDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILD 537
             IH LRADV SL+ VL RK KECE L  +SAD  +++  L A V DL +S+ ELKL LD
Sbjct: 479 GGIHSLRADVQSLSGVLCRKTKECEALHLTSADYASQLGDLNATVCDLKNSHEELKLFLD 538

Query: 538 MYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAE 597
           MY+RESTD RD+  A++ EY+AWAHV SLKSSLDEQ+LELRVK A EAEA+SQQ LAAAE
Sbjct: 539 MYKRESTDPRDIAEAKEQEYRAWAHVQSLKSSLDEQNLELRVKAANEAEAVSQQMLAAAE 598

Query: 598 AEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT 657
           AEIAD+RQK++  KRD+   SD LKSK+EE   YLSEI+TIG +Y+D+  QNQQLL Q+T
Sbjct: 599 AEIADLRQKMDDCKRDVAKHSDILKSKHEEHGTYLSEIQTIGSAYEDIVPQNQQLLLQVT 658

Query: 658 ERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLD 717
           ERDDYNIKL LEG+ +RQ+QD LL+DK++M+ +IQQ +A  +F   K++RIE+QLRFC D
Sbjct: 659 ERDDYNIKLFLEGITSRQMQDTLLIDKYIMDKDIQQGSAYASFLSKKSSRIEDQLRFCTD 718

Query: 718 QAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVK 777
           Q Q+LAED+ Q S +LEN QK+ +D+     Q R  +EES SKV +SR+    L++EL  
Sbjct: 719 QFQKLAEDKYQKSVSLENLQKKRADIGNGLEQARSRMEESHSKVEQSRVDYGALELELEI 778

Query: 778 ER 779
           ER
Sbjct: 779 ER 780

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689877|ref|NP_182022.2| E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] gi|75303266|sp|Q8RXD6.1|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gi|19698951|gb|AAL91211.1| unknown protein [Arabidopsis thaliana] gi|34098841|gb|AAQ56803.1| At2g44950 [Arabidopsis thaliana] gi|330255395|gb|AEC10489.1| E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana]

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/782 (57%), Positives = 581/782 (74%), Gaps = 5/782 (0%)

Query: 1   MGSTGEPDRKRRHFSSISPT--AATAKKNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQK 58
           M STGEPDRKRRHFSSISP+  AA  KK PFF  S E K+DTAVLQFQN KL QKLE Q+
Sbjct: 1   MASTGEPDRKRRHFSSISPSEAAAAVKKQPFFWPSSEDKLDTAVLQFQNLKLSQKLEAQQ 60

Query: 59  VEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSII 118
           VE S LE+K +Q+KE+Q PY+S+LK V+KSWE+L   +ESCS+R  +SS+G   R ++  
Sbjct: 61  VECSILEDKLSQIKEKQLPYNSSLKTVHKSWEKLTASVESCSVRVSDSSSGAH-RFVNKE 119

Query: 119 EDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLW 178
           +  +P   +D F++RL+ETGATESSS++ C NQMEE+      +    + N++AA ++L 
Sbjct: 120 DGSSPAVKND-FINRLLETGATESSSSNICSNQMEENGVNTSSQMTQTLYNLVAATEDLR 178

Query: 179 HLKGGLYAAVLK-DLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDID 237
            LK  LY  VL+ +L      Q A S L+SE+K+ R  L D+ +K KSL+RELQS +D D
Sbjct: 179 CLKDELYPTVLRTNLGKDLCGQLALSELESEIKSFRGDLDDVLVKFKSLSRELQSHRDAD 238

Query: 238 AKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRD 297
           AK +  L R++GELE  V EL++CN  L+ALRAERD T GAFFPVL+LGNK    DR RD
Sbjct: 239 AKVRVDLKRIRGELEDEVVELQQCNGDLSALRAERDATAGAFFPVLSLGNKLATSDRERD 298

Query: 298 EQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFL 357
           +QRDL+DME+V KEL   AS +L +LK LH+ R K+L ++ NLQN  KSV+C+SSS+A L
Sbjct: 299 KQRDLQDMETVLKELTVLASGRLQQLKNLHEERTKMLGKMSNLQNKSKSVRCISSSQACL 358

Query: 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIAD 417
           S+K+QLEKSK  VF+Y AL EKLQVEKD++ W+E E+N+K +L DV R++SAVTDS++A 
Sbjct: 359 SLKDQLEKSKEAVFQYMALLEKLQVEKDSIVWKEREINIKNELGDVSRKTSAVTDSRMAS 418

Query: 418 LGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAA 477
           L  EIQKQ+DEK RI+ RL   SRE GRKEI A+ +AL+SSFPE+MS+M+ QL+ YKE A
Sbjct: 419 LDSEIQKQLDEKMRIKTRLGNISRERGRKEIFADMKALISSFPEEMSSMRSQLNNYKETA 478

Query: 478 LDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILD 537
             IH LRADV SL+ VL RK KE E L   SAD  +++  L A V DL +S+ ELKL LD
Sbjct: 479 GGIHSLRADVQSLSGVLCRKTKEYEALQLRSADYASQLGDLNATVCDLKNSHEELKLFLD 538

Query: 538 MYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAE 597
           MY+RESTD+RD+  A++ EY+AWAHV SLKSSLDEQ+LELRVK A EAEA+SQQ LAAAE
Sbjct: 539 MYKRESTDARDIAEAKEQEYRAWAHVQSLKSSLDEQNLELRVKAANEAEAVSQQMLAAAE 598

Query: 598 AEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT 657
           AEIAD+RQK++  KRD+   SD LKSK+EE   YLSEI+TIG +Y+D+  QNQQLL Q+T
Sbjct: 599 AEIADLRQKMDDCKRDVAKHSDILKSKHEEHGTYLSEIQTIGSAYEDIVPQNQQLLLQVT 658

Query: 658 ERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLD 717
           ERDDYNIKL LEG+ +RQ+QD LL+DK++M+ +IQQ +A  +F   K++RIE+QLRFC D
Sbjct: 659 ERDDYNIKLFLEGITSRQMQDTLLIDKYIMDKDIQQGSAYASFLSKKSSRIEDQLRFCTD 718

Query: 718 QAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVK 777
           Q Q+LAED+ Q S +LEN QK+ +D+     Q R  LEES SKV +SRL    L++EL  
Sbjct: 719 QFQKLAEDKYQKSVSLENLQKKRADIGNGLEQARSRLEESHSKVEQSRLDYGALELELEI 778

Query: 778 ER 779
           ER
Sbjct: 779 ER 780

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	779
TAIR|locus:2054997	878	HUB1 "histone mono-ubiquitinat	0.996	0.883	0.572	1e-217
TAIR|locus:2035726	900	HUB2 "histone mono-ubiquitinat	0.946	0.818	0.312	2e-95
MGI|MGI:2142048	1001	Rnf40 "ring finger protein 40"	0.323	0.251	0.247	9.8e-25
RGD|628638	1002	Rnf40 "ring finger protein 40,	0.322	0.250	0.25	1.7e-23
UNIPROTKB|H3BP71	961	RNF40 "E3 ubiquitin-protein li	0.351	0.285	0.237	9.4e-23
UNIPROTKB|Q4R7K7	1001	RNF40 "E3 ubiquitin-protein li	0.351	0.273	0.237	1.1e-22
UNIPROTKB|O75150	1001	RNF40 "E3 ubiquitin-protein li	0.351	0.273	0.237	1.1e-22
UNIPROTKB|Q5RAU7	1001	RNF40 "E3 ubiquitin-protein li	0.351	0.273	0.237	1.8e-22
UNIPROTKB|F1RG77	1000	RNF40 "Uncharacterized protein	0.349	0.272	0.255	3e-22
UNIPROTKB|E1BCI2	1001	RNF40 "Uncharacterized protein	0.353	0.274	0.233	8.1e-22

TAIR|locus:2054997 HUB1 "histone mono-ubiquitination 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2103 (745.4 bits), Expect = 1.0e-217, P = 1.0e-217
 Identities = 448/783 (57%), Positives = 577/783 (73%)

Query:     1 MGSTGEPDRKRRHFSSISPT--AATAKKNPFF-PSSEEKKIDTAVLQFQNQKLVQKLETQ 57
             M STGEPDRKRRHFSSISP+  AA  KK PFF PSSE+K +DTAVLQFQN KL QKLE Q
Sbjct:     1 MASTGEPDRKRRHFSSISPSEAAAAVKKQPFFWPSSEDK-LDTAVLQFQNLKLSQKLEAQ 59

Query:    58 KVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSI 117
             +VE S LE+K +Q+KE+Q PY+S+LK V+KSWE+L   +ESCS+R  +SS+G   R ++ 
Sbjct:    60 QVECSILEDKLSQIKEKQLPYNSSLKTVHKSWEKLTASVESCSVRVSDSSSGAH-RFVNK 118

Query:   118 IEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNL 177
              +  +P   +D F++RL+ETGATESSS++ C NQMEE+      +    + N++AA ++L
Sbjct:   119 EDGSSPAVKND-FINRLLETGATESSSSNICSNQMEENGVNTSSQMTQTLYNLVAATEDL 177

Query:   178 WHLKGGLYAAVLK-DLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDI 236
               LK  LY  VL+ +L      Q A S L+SE+K+ R  L D+ +K KSL+RELQS +D 
Sbjct:   178 RCLKDELYPTVLRTNLGKDLCGQLALSELESEIKSFRGDLDDVLVKFKSLSRELQSHRDA 237

Query:   237 DAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVR 296
             DAK +  L R++GELE  V EL++CN  L+ALRAERD T GAFFPVL+LGNK    DR R
Sbjct:   238 DAKVRVDLKRIRGELEDEVVELQQCNGDLSALRAERDATAGAFFPVLSLGNKLATSDRER 297

Query:   297 DEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAF 356
             D+QRDL+DME+V KEL   AS +L +LK LH+ R K+L ++ NLQN  KSV+C+SSS+A 
Sbjct:   298 DKQRDLQDMETVLKELTVLASGRLQQLKNLHEERTKMLGKMSNLQNKSKSVRCISSSQAC 357

Query:   357 LSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIA 416
             LS+K+QLEKSK  VF+Y AL EKLQVEKD++ W+E E+N+K +L DV R++SAVTDS++A
Sbjct:   358 LSLKDQLEKSKEAVFQYMALLEKLQVEKDSIVWKEREINIKNELGDVSRKTSAVTDSRMA 417

Query:   417 DLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEA 476
              L  EIQKQ+DEK RI+ RL   SRE GRKEI A+ +AL+SSFPE+MS+M+ QL+ YKE 
Sbjct:   418 SLDSEIQKQLDEKMRIKTRLGNISRERGRKEIFADMKALISSFPEEMSSMRSQLNNYKET 477

Query:   477 ALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLIL 536
             A  IH LRADV SL+ VL RK KE E L   SAD  +++  L A V DL +S+ ELKL L
Sbjct:   478 AGGIHSLRADVQSLSGVLCRKTKEYEALQLRSADYASQLGDLNATVCDLKNSHEELKLFL 537

Query:   537 DMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAA 596
             DMY+RESTD+RD+  A++ EY+AWAHV SLKSSLDEQ+LELRVK A EAEA+SQQ LAAA
Sbjct:   538 DMYKRESTDARDIAEAKEQEYRAWAHVQSLKSSLDEQNLELRVKAANEAEAVSQQMLAAA 597

Query:   597 EAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMXXXXXXXXXXI 656
             EAEIAD+RQK++  KRD+   SD LKSK+EE   YLSEI+TIG +Y+D+          +
Sbjct:   598 EAEIADLRQKMDDCKRDVAKHSDILKSKHEEHGTYLSEIQTIGSAYEDIVPQNQQLLLQV 657

Query:   657 TERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCL 716
             TERDDYNIKL LEG+ +RQ+QD LL+DK++M+ +IQQ +A  +F   K++RIE+QLRFC 
Sbjct:   658 TERDDYNIKLFLEGITSRQMQDTLLIDKYIMDKDIQQGSAYASFLSKKSSRIEDQLRFCT 717

Query:   717 DQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELV 776
             DQ Q+LAED+ Q S +LEN QK+ +D+     Q R  LEES SKV +SRL    L++EL 
Sbjct:   718 DQFQKLAEDKYQKSVSLENLQKKRADIGNGLEQARSRLEESHSKVEQSRLDYGALELELE 777

Query:   777 KER 779
              ER
Sbjct:   778 IER 780

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010162 "seed dormancy process" evidence=RCA;IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0010390 "histone monoubiquitination" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0006513 "protein monoubiquitination" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0016049 "cell growth" evidence=RCA;IMP

GO:0048505 "regulation of timing of cell differentiation" evidence=IMP

GO:0051301 "cell division" evidence=RCA;IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA;IMP

GO:0033523 "histone H2B ubiquitination" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0003002 "regionalization" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010074 "maintenance of meristem identity" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0033043 "regulation of organelle organization" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048366 "leaf development" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2035726 HUB2 "histone mono-ubiquitination 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
 Identities = 236/755 (31%), Positives = 411/755 (54%)

Query:    35 EKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELIT 94
             E  +D  VLQ QNQKLVQ+L+ QK +   +E+K  +L+  Q  YD  L  VN+ W +L+ 
Sbjct:    57 EIDVDATVLQLQNQKLVQQLDLQKKQLYDVESKIQELQLNQTSYDDELISVNQLWNQLVD 116

Query:    95 DLESCSMRARESSNGQESRCLSIIED--VTPHPSHDAFLSRLMETGATESSSADNCPNQM 152
             DL    +RA   +N +    L I++   V P  + + FL RL++  + ++S +D    ++
Sbjct:   117 DLILLGVRA--GANQEALNYLDIVDKKRVPPCAADETFLCRLLQVDSLDTSKSDEVVRKV 174

Query:   153 EED---RETGIPRTKNIVSNIL-AAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSN--LQ 206
             EE    R +       +  N +         +   L+A  +K  +D  + Q +S N  ++
Sbjct:   175 EEALALRHSSTMELMGLFENTIDTQKTKAESISQSLHA--VKSTEDA-TIQLSSINDLMK 231

Query:   207 SEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLA 266
              E KNLR  +  LH++HK  + ++Q+     + D+++L  LKG+LE    ELEE   KL 
Sbjct:   232 EESKNLREMIDALHVRHKEHSEQIQAYISSHSTDQSELKHLKGQLEEIKAELEENRRKLI 291

Query:   267 ALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGL 326
              L+ ++D           + N  ++ ++  D+ + LR+++    E+   A  +L EL+  
Sbjct:   292 TLKMQKDAACEGHVTSPAIANGSLSPEKPVDKTK-LRELKDSIDEIKIMAEGRLSELQAS 350

Query:   327 HDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDN 386
              +  + + +Q  +++N LK  + + SS+ +  + +++    +E+ +Y+ L E +Q E+  
Sbjct:   351 QEYNLSLSRQCQDIENELKDDQYIYSSRLYSLINDRIHHWNAELDRYKILTEAIQAERSF 410

Query:   387 LAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRK 446
             +  R+ ELN++ + ++     +    S+I  L  ++Q  I EKN +E+  EEA ++  R+
Sbjct:   411 VMRRDKELNLRAESLEAANHKTTTVGSRIEVLEKKLQSCIIEKNGLELETEEAIQDSERQ 470

Query:   447 EIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLA 506
             +I +EF A+ S+  ++M  M+ QL ++K+ A D   LR    SL   L  K  E + L  
Sbjct:   471 DIKSEFIAMASTLSKEMEMMEAQLKRWKDTAQDALYLREQAQSLRVSLSNKADEQKGLED 530

Query:   507 SSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSL 566
               A Q+AEI  L+A+++ L    L+L+ +  +  RE  D R +   +D + KA A    L
Sbjct:   531 KCAKQMAEIKSLKALIEKLLKEKLQLQNLASICTRECNDDRGLAEIKDSQRKAQAQAEEL 590

Query:   567 KSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNE 626
             K+ LDE  LELRVK A E E+  Q+RLA A+AEIA++R +L+  +R+++ L + +K K +
Sbjct:   591 KNVLDEHFLELRVKAAHETESACQERLATAKAEIAELRTQLDLSEREVLELKEGIKVKEQ 650

Query:   627 EIEAYLSEIETIGQSYDDMXXXXXXXXXXITERDDYNIKLVLEGVRARQLQDALLMDKHM 686
             E EA ++E+ETIGQ+Y+DM          + ERDDYNIKLV E V+ +   +  L +K +
Sbjct:   651 EAEASIAEMETIGQAYEDMQTQNQHLLQQVAERDDYNIKLVSESVKTKHAYNTHLSEKQV 710

Query:   687 MESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKS 746
             ME ++ Q NAS+  F  + A  E Q++ C  +A +L ++      +LE T+  ++D  K 
Sbjct:   711 MEKQLHQVNASVENFKARIAHNEEQMKGCFSEAYKLIQEDRHLVISLETTKWEVADADKE 770

Query:   747 SVQVRGSLEESQSKVYK--SRLTLMELQIELVKER 779
                ++ ++  S+ K Y+  SR T  ++++EL  ER
Sbjct:   771 FRWLKSAVSSSE-KEYEQISRRT-DDIKLELDDER 803

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010162 "seed dormancy process" evidence=IMP

GO:0010390 "histone monoubiquitination" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA;IMP

GO:0033523 "histone H2B ubiquitination" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

MGI|MGI:2142048 Rnf40 "ring finger protein 40" [Mus musculus (taxid:10090)]

 Score = 199 (75.1 bits), Expect = 9.8e-25, Sum P(3) = 9.8e-25
 Identities = 66/267 (24%), Positives = 130/267 (48%)

Query:   513 AEIHK-LQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLD 571
             +E+ K L+A ++   +S  E+KL+LDMY+    + RD +     E KA A V  L+S + 
Sbjct:   649 SELLKGLRAELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIR 708

Query:   572 EQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAY 631
             E     R ++   A+  + +R+  AE +I  +++KL A             +K EE EA 
Sbjct:   709 ELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGA-------------TKQEE-EAL 754

Query:   632 LSEIETIGQSYDDMXXXXXXXXXXITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEI 691
             LSE++  GQ+++DM          + E+DD N KL+ E ++A Q+   L  +K  +  ++
Sbjct:   755 LSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQV 814

Query:   692 QQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVR 751
                 + ++   +   ++E + R        + ++ +  S  LE  +++  +  + +  ++
Sbjct:   815 LGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLK 874

Query:   752 GSLEESQSKVYKSRLTLMELQIELVKE 778
               LE  Q+++ + +  L E +    KE
Sbjct:   875 VQLEHVQTRLREIQPCLAESRAAREKE 901

GO:0000151 "ubiquitin ligase complex" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010390 "histone monoubiquitination" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0017075 "syntaxin-1 binding" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0033503 "HULC complex" evidence=ISO

GO:0033523 "histone H2B ubiquitination" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|628638 Rnf40 "ring finger protein 40, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 198 (74.8 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
 Identities = 67/268 (25%), Positives = 131/268 (48%)

Query:   513 AEIHK-LQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSL- 570
             +E+ K L+A ++   +S  E+KL+LDMY+    + RD +     E KA A V  L+S + 
Sbjct:   650 SELLKGLRAELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIR 709

Query:   571 DEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEA 630
             D +  + R    I A+  + +R+  AE +I  +++KL A             +K EE EA
Sbjct:   710 DLEERDRRESKKI-ADEDALRRIRQAEEQIEHLQRKLGA-------------TKQEE-EA 754

Query:   631 YLSEIETIGQSYDDMXXXXXXXXXXITERDDYNIKLVLEGVRARQLQDALLMDKHMMESE 690
              LSE++  GQ+++DM          + E+DD N KL+ E ++A Q+   L  +K  +  +
Sbjct:   755 LLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQ 814

Query:   691 IQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQV 750
             +    + ++   +   ++E + R        + ++ +  S  LE  +++  +  + +  +
Sbjct:   815 VLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDL 874

Query:   751 RGSLEESQSKVYKSRLTLMELQIELVKE 778
             +  LE  Q+++ + +  L E +    KE
Sbjct:   875 KVQLEHVQTRLREIQPCLAESRAAREKE 902

GO:0000151 "ubiquitin ligase complex" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010390 "histone monoubiquitination" evidence=IEA;ISO

GO:0017075 "syntaxin-1 binding" evidence=IPI

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO

GO:0032403 "protein complex binding" evidence=IDA

GO:0033503 "HULC complex" evidence=ISO;ISS

GO:0033523 "histone H2B ubiquitination" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|H3BP71 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 9.4e-23, Sum P(3) = 9.4e-23
 Identities = 69/290 (23%), Positives = 140/290 (48%)

Query:   490 LTNVLERKVKECETLLASSADQVAEIHK-LQAMVQDLTDSNLELKLILDMYRRESTDSRD 548
             + + L R  +E +  +  +  + +E+ K L+A ++   +S  E+KL+LDMY+    + RD
Sbjct:   587 VASALSRADRE-KAKVEETKRKESELLKGLRAELKKAQESQKEMKLLLDMYKSAPKEQRD 645

Query:   549 VLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLE 608
              +     E KA A V  L+S + E     R ++   A+  + +R+  AE +I  +++KL 
Sbjct:   646 KVQLMAAERKAKAEVDELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLG 705

Query:   609 AFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMXXXXXXXXXXITERDDYNIKLVL 668
             A             +K EE EA LSE++  GQ+++DM          + E+DD N KL+ 
Sbjct:   706 A-------------TKQEE-EALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMS 751

Query:   669 EGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ 728
             E ++A Q+   L  +K  +  ++    + ++   +   ++E + R        + ++ + 
Sbjct:   752 ERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTL 811

Query:   729 NSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKE 778
              S  LE  +++  +  + +  ++  LE  Q+++ + +  L E +    KE
Sbjct:   812 RSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKE 861

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q4R7K7 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Macaca fascicularis (taxid:9541)]

 Score = 201 (75.8 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
 Identities = 69/290 (23%), Positives = 140/290 (48%)

Query:   490 LTNVLERKVKECETLLASSADQVAEIHK-LQAMVQDLTDSNLELKLILDMYRRESTDSRD 548
             + + L R  +E +  +  +  + +E+ K L+A ++   +S  E+KL+LDMY+    + RD
Sbjct:   627 VASALSRADRE-KAKVEEAKRKESELLKGLRAELKKAQESQKEMKLLLDMYKSAPKEQRD 685

Query:   549 VLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLE 608
              +     E KA A V  L+S + E     R ++   A+  + +R+  AE +I  +++KL 
Sbjct:   686 KVQLMAAERKAKAEVDELRSRIRELEERDRRESKKIADGDALRRIRQAEEQIEHLQRKLG 745

Query:   609 AFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMXXXXXXXXXXITERDDYNIKLVL 668
             A             +K EE EA LSE++  GQ+++DM          + E+DD N KL+ 
Sbjct:   746 A-------------TKQEE-EALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMS 791

Query:   669 EGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ 728
             E ++A Q+   L  +K  +  ++    + ++   +   ++E + R        + ++ + 
Sbjct:   792 ERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTL 851

Query:   729 NSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKE 778
              S  LE  +++  +  + +  ++  LE  Q+++ + +  L E +    KE
Sbjct:   852 RSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKE 901

GO:0000151 "ubiquitin ligase complex" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0010390 "histone monoubiquitination" evidence=ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=ISS

GO:0033503 "HULC complex" evidence=ISS

GO:0033523 "histone H2B ubiquitination" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

UNIPROTKB|O75150 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
 Identities = 69/290 (23%), Positives = 140/290 (48%)

Query:   490 LTNVLERKVKECETLLASSADQVAEIHK-LQAMVQDLTDSNLELKLILDMYRRESTDSRD 548
             + + L R  +E +  +  +  + +E+ K L+A ++   +S  E+KL+LDMY+    + RD
Sbjct:   627 VASALSRADRE-KAKVEETKRKESELLKGLRAELKKAQESQKEMKLLLDMYKSAPKEQRD 685

Query:   549 VLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLE 608
              +     E KA A V  L+S + E     R ++   A+  + +R+  AE +I  +++KL 
Sbjct:   686 KVQLMAAERKAKAEVDELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLG 745

Query:   609 AFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMXXXXXXXXXXITERDDYNIKLVL 668
             A             +K EE EA LSE++  GQ+++DM          + E+DD N KL+ 
Sbjct:   746 A-------------TKQEE-EALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMS 791

Query:   669 EGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ 728
             E ++A Q+   L  +K  +  ++    + ++   +   ++E + R        + ++ + 
Sbjct:   792 ERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTL 851

Query:   729 NSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKE 778
              S  LE  +++  +  + +  ++  LE  Q+++ + +  L E +    KE
Sbjct:   852 RSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKE 901

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017075 "syntaxin-1 binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0033523 "histone H2B ubiquitination" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0010390 "histone monoubiquitination" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0043005 "neuron projection" evidence=ISS

GO:0033503 "HULC complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q5RAU7 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Pongo abelii (taxid:9601)]

 Score = 200 (75.5 bits), Expect = 1.8e-22, Sum P(3) = 1.8e-22
 Identities = 69/290 (23%), Positives = 140/290 (48%)

Query:   490 LTNVLERKVKECETLLASSADQVAEIHK-LQAMVQDLTDSNLELKLILDMYRRESTDSRD 548
             + + L R  +E +  +  +  + +E+ K L+A ++   +S  E+KL+LDMY+    + RD
Sbjct:   627 VASALSRADRE-KAKVEEAKRKESELLKGLRAELKKAQESQKEMKLLLDMYKSAPKEQRD 685

Query:   549 VLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLE 608
              +     E KA A V  L+S + E     R ++   A+  + +R+  AE +I  +++KL 
Sbjct:   686 KVQLMAAERKAKAEVDELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLG 745

Query:   609 AFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMXXXXXXXXXXITERDDYNIKLVL 668
             A             +K EE EA LSE++  GQ+++DM          + E+DD N KL+ 
Sbjct:   746 A-------------TKQEE-EALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMS 791

Query:   669 EGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ 728
             E ++A Q+   L  +K  +  ++    + ++   +   ++E + R        + ++ + 
Sbjct:   792 ERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTL 851

Query:   729 NSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKE 778
              S  LE  +++  +  + +  ++  LE  Q+++ + +  L E +    KE
Sbjct:   852 RSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKE 901

GO:0000151 "ubiquitin ligase complex" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0010390 "histone monoubiquitination" evidence=ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=ISS

GO:0033503 "HULC complex" evidence=ISS

GO:0033523 "histone H2B ubiquitination" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

UNIPROTKB|F1RG77 RNF40 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 196 (74.1 bits), Expect = 3.0e-22, Sum P(3) = 3.0e-22
 Identities = 75/293 (25%), Positives = 143/293 (48%)

Query:   489 SLTNVLERKVKECETLLASSADQVAEIHK-LQAMVQDLTDSNLELKLILDMYRRESTDSR 547
             S+ + L R  +E +  +  +  + +E+ K L+A ++   +S  E+KL+LDMY+    + R
Sbjct:   626 SVASALSRADRE-KAKVEEAKRKESELLKGLRAELKKAQESQKEMKLLLDMYKSAPKEQR 684

Query:   548 DVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKL 607
             D +     E KA A V  L+S + E     R ++   A+  + +R+  AE +I  +++KL
Sbjct:   685 DKVQLMAAERKAKAEVDELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKL 744

Query:   608 EAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMXXXXXXXXXXITERDDYNIKLV 667
              A             +K EE EA LSE++  GQ+++DM          + E+DD N KL+
Sbjct:   745 GA-------------TKQEE-EALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLM 790

Query:   668 LEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIE--NQLRFCLDQAQRLAED 725
              E ++A Q+   L  +K  +  ++    + ++   +   ++E  N L   L   ++  E 
Sbjct:   791 SERIKANQILKLLREEKDELGEQVLGLKSQVDAQLLTVQKLERKNGLAGTLGGVKK--EL 848

Query:   726 RSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKE 778
               +N A LE  ++R  +  + +  ++  LE  Q+++ + +  L E +    KE
Sbjct:   849 TLRNPA-LELNKRRAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKE 900

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0033523 "histone H2B ubiquitination" evidence=IEA

GO:0033503 "HULC complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0010390 "histone monoubiquitination" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BCI2 RNF40 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 193 (73.0 bits), Expect = 8.1e-22, Sum P(3) = 8.1e-22
 Identities = 68/291 (23%), Positives = 138/291 (47%)

Query:   489 SLTNVLERKVKECETLLASSADQVAEIHK-LQAMVQDLTDSNLELKLILDMYRRESTDSR 547
             S+ + L R  +E +  +     + +E+ K L+  ++   +S  E+KL+LDMY+    + R
Sbjct:   626 SVASALSRADRE-KAKVEEVKRKESELLKGLRVELKKAQESQKEMKLLLDMYKSAPKEQR 684

Query:   548 DVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKL 607
             D +     E KA A V  L+  + E     R ++   A+  + +R+  AE +I  +++KL
Sbjct:   685 DKVQLMAAERKAKAEVDELRGRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKL 744

Query:   608 EAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMXXXXXXXXXXITERDDYNIKLV 667
              A             +K EE EA LSE++  GQ+++DM          + E+DD N KL+
Sbjct:   745 GA-------------TKQEE-EALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLM 790

Query:   668 LEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRS 727
              E ++A Q+   L  +K  +  ++    + ++   +   ++E + R        + ++ +
Sbjct:   791 SERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELT 850

Query:   728 QNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKE 778
               S  LE  +++  +  + +  ++  LE  Q+++ + +  L E +    KE
Sbjct:   851 LRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKE 901

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0033523 "histone H2B ubiquitination" evidence=IEA

GO:0033503 "HULC complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0010390 "histone monoubiquitination" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RXD6	BRE1A_ARATH	6, ., 3, ., 2, ., -	0.5792	0.9974	0.8849	yes	no
Q7XU27	BRE1A_ORYSJ	6, ., 3, ., 2, ., -	0.4631	0.9974	0.8789	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019139001 SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (878 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	779
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.0 bits (138), Expect = 4e-08
 Identities = 36/203 (17%), Positives = 88/203 (43%), Gaps = 7/203 (3%)

Query: 575 LELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSE 634
           LE +++   E  A  ++ LA    E+ ++ ++LE  ++++  LS  + +  +++    +E
Sbjct: 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741

Query: 635 IETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQA 694
           +E + +    +  +  +L  +I E ++   +   E   A    + L       E++I+Q 
Sbjct: 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL-------EAQIEQL 794

Query: 695 NASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSL 754
              L         +  +L    ++A  L E        +  T++RL D+ +   ++   +
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 755 EESQSKVYKSRLTLMELQIELVK 777
           E   +++ +    + EL+ EL  
Sbjct: 855 ESLAAEIEELEELIEELESELEA 877

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.9 bits (130), Expect = 3e-07
 Identities = 52/296 (17%), Positives = 127/296 (42%), Gaps = 17/296 (5%)

Query: 491 TNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVL 550
              LE ++ E E  L    +++  +      ++DL +   EL+  L+   R+  + +  L
Sbjct: 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLE---ELRRQLEELERQLEELKREL 725

Query: 551 AARDLEYKAW-AHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEA 609
           AA + E +   + +  L+  L+E   EL        E   ++ L + E  +A +++++E 
Sbjct: 726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEEL--EEELESLEEALAKLKEEIEE 783

Query: 610 FKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIK---- 665
            +    +L + L+   EE+E     ++ + +  + ++ + ++L Q+I E ++   +    
Sbjct: 784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843

Query: 666 ---LVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRL 722
              L  E     +  + L  +   +E+E ++    L   + +   +E +LR    +   L
Sbjct: 844 LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903

Query: 723 AEDRSQNSANLENTQKRL----SDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIE 774
            E+  +    LE  + +L     ++ +   ++    E++     +  +  +E +IE
Sbjct: 904 KEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIE 959

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 53.5 bits (129), Expect = 4e-07
 Identities = 109/616 (17%), Positives = 224/616 (36%), Gaps = 78/616 (12%)

Query: 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCK 264
           L++E++ L   L +L  + + L  +L++ +   A+ + ++  L  E+E     LE     
Sbjct: 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER---- 411

Query: 265 LAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELK 324
           L   R             L           + + + +L +++   + L +       EL+
Sbjct: 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471

Query: 325 GLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLS--VKNQLEKSKSEVFKYQALFEKLQV 382
                     ++L  LQ  L S++ L  +    S  VK  L+           L E + V
Sbjct: 472 EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV 531

Query: 383 EKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQID-------EKNRIEMR 435
           ++   A  E  L  ++  V        V +   A   I   KQ +         + I+  
Sbjct: 532 DEGYEAAIEAALGGRLQAV-------VVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGT 584

Query: 436 LEEASREPGRKEII-------------AEFRALVSSF------PEDMSAMQRQLSKYKEA 476
             + +     K I               + R  +S         +D+        K +  
Sbjct: 585 EIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPG 644

Query: 477 A----LDIHILR-------ADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDL 525
                LD  ++R           + +++LER+ +E E L     +   +I +L+  + +L
Sbjct: 645 YRIVTLDGDLVRPGGVITGGSAKTNSSILERR-REIEELEEKIEELEEKIAELEKALAEL 703

Query: 526 TDSNLELKLILDMYRRESTDSRDVLAARDLEY-KAWAHVHSLKSSLDEQSLELRVKTAIE 584
                EL+  L+  R+E  +    ++A   +  +  A V  L+  + + S EL    A  
Sbjct: 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763

Query: 585 AE-----AISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIG 639
            E       +++ LA AEAEI ++  ++E  K ++ +L +AL     E+           
Sbjct: 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL----------- 812

Query: 640 QSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLN 699
                    N++        +    ++     R   L++        +  +I+   A + 
Sbjct: 813 ------TLLNEEAANLRERLESLERRIAATERRLEDLEEQ----IEELSEDIESLAAEIE 862

Query: 700 FFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQS 759
             +     +E++L   L++   L E  +   + LE   + L ++     ++R  LEE + 
Sbjct: 863 ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922

Query: 760 KVYKSRLTLMELQIEL 775
           K+ +  L L  L++ +
Sbjct: 923 KLAQLELRLEGLEVRI 938

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 51/295 (17%), Positives = 122/295 (41%), Gaps = 38/295 (12%)

Query: 421 EIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDI 480
           E+++++ E   +E +LE+   E      +   +  + S  + +  ++RQL    E    +
Sbjct: 671 ELEEELAE---LEAQLEKLEEE------LKSLKNELRSLEDLLEELRRQLE---ELERQL 718

Query: 481 HILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYR 540
             L+ ++ +L   LE+     E L     +   E+ +LQ  +++L +    L+  L   +
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778

Query: 541 RESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQ--SLELRVKTAIEAEAISQQRLAAAEA 598
            E  +  +   A   E +    +       + +  +LE  +++  +     +Q +   E 
Sbjct: 779 EEIEELEEKRQALQEELEE---LEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835

Query: 599 EIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITE 658
           EI ++ +KL+  + ++  L   L+   EE+E   +E E +     +++ + ++L +++ E
Sbjct: 836 EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895

Query: 659 RDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLR 713
                                L  +   ++ EI++    L   + K  R+E +L 
Sbjct: 896 ---------------------LESELAELKEEIEKLRERLEELEAKLERLEVELP 929

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 61/282 (21%), Positives = 130/282 (46%), Gaps = 7/282 (2%)

Query: 421 EIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDI 480
             Q+   E   +E+ L  A  +  RKE+  E    +S   E++  +Q +L   +EA  +I
Sbjct: 214 RYQELKAELRELELALLLAKLKELRKEL-EELEEELSRLEEELEELQEEL---EEAEKEI 269

Query: 481 HILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYR 540
             L++++  L   LE   +E   L     +   EI  L+  +++L +   EL+  L+  +
Sbjct: 270 EELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELK 329

Query: 541 -RESTDSRDVLAARDLEYKAWAHVHSLKSSLDE--QSLELRVKTAIEAEAISQQRLAAAE 597
            +      ++     L  +    +  L+ + +E  + L   ++   E     ++ LA  E
Sbjct: 330 EKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELE 389

Query: 598 AEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT 657
           AE+A++R +LE  KR++ SL + L+  +E +E    E++ +    +++QT+ ++L +++ 
Sbjct: 390 AELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELE 449

Query: 658 ERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLN 699
           E ++   +L        +    L  +   +E E+    A L+
Sbjct: 450 ELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLD 491

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 39/207 (18%), Positives = 92/207 (44%)

Query: 569 SLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEI 628
               + L+  +    E     Q RL   E E+ ++ ++LE  +  +  L + L+S  E +
Sbjct: 715 ERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774

Query: 629 EAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMME 688
                EIE + +    +Q + ++L +++ E +     L  E     Q ++ L  +   +E
Sbjct: 775 AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834

Query: 689 SEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSV 748
            EI++    L+  + +   +E +L    ++ + L  ++ +    L+  ++   ++ +   
Sbjct: 835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELR 894

Query: 749 QVRGSLEESQSKVYKSRLTLMELQIEL 775
           ++   L E + ++ K R  L EL+ +L
Sbjct: 895 ELESELAELKEEIEKLRERLEELEAKL 921

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.0 bits (112), Expect = 4e-05
 Identities = 49/289 (16%), Positives = 127/289 (43%), Gaps = 21/289 (7%)

Query: 444 GRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECET 503
            R+  I E    +    E ++ +++ L++ ++   ++      +      L R++     
Sbjct: 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733

Query: 504 LLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHV 563
            LA      AE+ +L+  +  L+    EL+  ++       ++ + LA  +      A +
Sbjct: 734 DLARLE---AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE------AEI 784

Query: 564 HSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVS------- 616
             L++ +++   EL  K   EA    +  L     E A++R++LE+ +R + +       
Sbjct: 785 EELEAQIEQLKEEL--KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED 842

Query: 617 LSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQL 676
           L + ++  +E+IE+  +EIE + +  ++++++ + LL +    ++    L  E     + 
Sbjct: 843 LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902

Query: 677 QDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAED 725
              L   +  +  E+++    L   +++   +E ++    +  +RL+E+
Sbjct: 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRI---DNLQERLSEE 948

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.0 bits (112), Expect = 4e-05
 Identities = 64/320 (20%), Positives = 121/320 (37%), Gaps = 53/320 (16%)

Query: 363 LEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEI 422
           L + + +  +YQAL ++          RE E    +   +   R     + ++A L  E+
Sbjct: 203 LRREREKAERYQALLKEK---------REYEGYELLKEKEALERQKEAIERQLASLEEEL 253

Query: 423 QKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHI 482
           +K  +E + +E RLEE  +    +E+  + + L     E+   ++ +          I  
Sbjct: 254 EKLTEEISELEKRLEEIEQL--LEELNKKIKDLGE---EEQLRVKEK----------IGE 298

Query: 483 LRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRE 542
           L A++ SL   +  K +E E      A   AEI KL A +++L     E +   D    E
Sbjct: 299 LEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEE 358

Query: 543 STDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAIS------------- 589
             + ++ L   DL  +           +D++  E R +     E +              
Sbjct: 359 YAELKEEL--EDLRAEL--------EEVDKEFAETRDELKDYREKLEKLKREINELKREL 408

Query: 590 ---QQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQ 646
              Q+ L     E+AD+   +   +  +  L +  + K  EI+    ++E +     D+ 
Sbjct: 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA---DLS 465

Query: 647 TQNQQLLQQITERDDYNIKL 666
              Q+L     E D    +L
Sbjct: 466 KYEQELYDLKEEYDRVEKEL 485

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 40/227 (17%), Positives = 98/227 (43%), Gaps = 16/227 (7%)

Query: 567 KSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNE 626
           K S   Q  EL  K   E  A  + +L   E E+  ++ +L + +  +  L   L+    
Sbjct: 659 KRSSLAQKREL--KELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716

Query: 627 EIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQ----LQDALLM 682
           ++E    E+  + +  + +Q++ ++L +++ E ++   +L        +    L++AL  
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK 776

Query: 683 DKHMMES----------EIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSAN 732
            K  +E           E+++    L   + +   +E +L     + +RL ++  +    
Sbjct: 777 LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEE 836

Query: 733 LENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKER 779
           +E  +++L ++ +   ++   LEE + ++ +      EL+ EL +  
Sbjct: 837 IEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELE 883

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.0 bits (107), Expect = 2e-04
 Identities = 91/625 (14%), Positives = 218/625 (34%), Gaps = 80/625 (12%)

Query: 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQ-------DIDAKDKAKLNRLKGELESAVKE 257
           L+ E++ L+  L +   + + LT ELQ  +          ++ + ++  L+ EL +   E
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296

Query: 258 LEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVH--KELMDQ 315
           +     +   LR             L    + +       E +     E +   +E +++
Sbjct: 297 ISRLEQQKQILRERLAN--------LERQLEELEAQLEELESKLDELAEELAELEEKLEE 348

Query: 316 ASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQA 375
              +L  L+   +     L++L +    L+  +  +       ++ Q+    +E+ + +A
Sbjct: 349 LKEELESLEAELEELEAELEELESRLEELE-EQLETLRSKVAQLELQIASLNNEIERLEA 407

Query: 376 LFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMR 435
             E+L+  ++ L     EL  K++  ++         +++ +L  E+++  +E  R+E  
Sbjct: 408 RLERLEDRRERLQQEIEELLKKLEEAEL-----KELQAELEELEEELEELQEELERLEEA 462

Query: 436 LEEASREPGRKEIIAEFRAL------VSSFPEDMSAMQRQLSKY-------KEAALDIHI 482
           LEE   E   +E      A       + +  + +  +Q  L  +        +    +  
Sbjct: 463 LEELREE--LEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSG 520

Query: 483 LRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAM--VQDLTDSNLELKLILDMYR 540
           +   +  L +V E      E  L      V   +   A   +  L  + L     L +  
Sbjct: 521 ILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPL-- 578

Query: 541 RESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLA----AA 596
                  D +   +++      + +++  L     +  VK   +        L       
Sbjct: 579 -------DSIKGTEIQGNDREILKNIEGFL--GVAKDLVKFDPKLRKALSYLLGGVLVVD 629

Query: 597 EAEIADMRQKLEAFKRDMVSLSDAL------------------KSKNEEIEAYLSEIETI 638
           + + A    K       +V+L   L                    +  EIE    +IE +
Sbjct: 630 DLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEEL 689

Query: 639 GQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASL 698
            +   +++    +L +++ E ++   +L  E     +   AL  D   +E+E++Q    +
Sbjct: 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749

Query: 699 NFFDMKAARIENQLRFCLDQ-------AQRLAEDRSQNSANLENTQKRLSDVRKSSVQVR 751
                +   +E ++    ++             +  +  A +E  ++ L  +R++  ++R
Sbjct: 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR 809

Query: 752 GSLEESQSKVYKSRLTLMELQIELV 776
             L     +    R  L  L+  + 
Sbjct: 810 AELTLLNEEAANLRERLESLERRIA 834

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 45.1 bits (107), Expect = 2e-04
 Identities = 79/488 (16%), Positives = 197/488 (40%), Gaps = 32/488 (6%)

Query: 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCK 264
           L++ +  +    ++     +   REL+   +   +   +L  L+ E+E   +ELE     
Sbjct: 254 LKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRAL 313

Query: 265 LAALRAERDVTKGAFFPVLNLGNKH-VAGDRVRDEQRDLRDMESVHKELMDQASHQLLEL 323
           L  L    +  K     +  L  K       + +   +  ++  + +E + +   +L EL
Sbjct: 314 LEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEEL 373

Query: 324 KGLHDGRIKVLQQLY-NLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQV 382
           +   +  ++ L+QL   +Q   + +  LS+  A   ++ +LE+ + E+ + +   E+L+ 
Sbjct: 374 EKELEKALERLKQLEEAIQELKEELAELSA--ALEEIQEELEELEKELEELERELEELEE 431

Query: 383 EKDNLAWRETELNMKIDLVDVFRRSSAVT-----------DSKIADLGIEIQKQIDEKNR 431
           E   L  +  +L  K  ++     +               + ++ +L     ++++E+  
Sbjct: 432 EIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELS 491

Query: 432 IEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSL- 490
            E    E   E   +E+  E R L     E +   +    + +E    +  L  ++  L 
Sbjct: 492 REKEEAELREE--IEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELK 549

Query: 491 ----TNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLI---LDMYRRES 543
                  L+ ++++ E  L    + + E+  L+   ++L +    LK +   L       
Sbjct: 550 EKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERL 609

Query: 544 TDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAIS-----QQRLAAAEA 598
           +   ++L + +L   A   +   +  L+ +  +L ++  +E    +     ++++   EA
Sbjct: 610 SQLEELLQSLELSE-AENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEA 668

Query: 599 EIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITE 658
           EI    Q++E  +  +    + L+   EE+E    E+E + +   +++   ++L  +  E
Sbjct: 669 EIRRELQRIEN-EEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAE 727

Query: 659 RDDYNIKL 666
            ++   +L
Sbjct: 728 LEELKKEL 735

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 64/313 (20%), Positives = 130/313 (41%), Gaps = 16/313 (5%)

Query: 471 SKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNL 530
            + +EA   +     ++  L ++LE   K+ E L    A++     +L+A +++L  + L
Sbjct: 172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKL-ERQAEKAERYQELKAELRELELALL 230

Query: 531 ELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQS-LELRVKTAIEAEAIS 589
             KL       E  +        +LE         L+ +  E   L+  ++   E     
Sbjct: 231 LAKLKELRKELEELEEELSRLEEELE----ELQEELEEAEKEIEELKSELEELREELEEL 286

Query: 590 QQRL-------AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSY 642
           Q+ L          E EI+ +R++LE  + ++  L + L+   E+IEA   E+E      
Sbjct: 287 QEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLL 346

Query: 643 DDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFD 702
           ++++    +L +   E ++    L+ E     +     L +    E+E+ +    L    
Sbjct: 347 EELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAEL---EAELAEIRNELEELK 403

Query: 703 MKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVY 762
            +   +E +L    ++ + L E+  +  A LE  Q  L ++ +   ++   LEE + ++ 
Sbjct: 404 REIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK 463

Query: 763 KSRLTLMELQIEL 775
           +    L ELQ EL
Sbjct: 464 ELERELAELQEEL 476

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.5 bits (103), Expect = 5e-04
 Identities = 44/288 (15%), Positives = 107/288 (37%), Gaps = 24/288 (8%)

Query: 490 LTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDV 549
           L    E   ++ E +    A    E+ KL   + +L      L+ I  +    +   +D+
Sbjct: 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISEL---EKRLEEIEQLLEELNKKIKDL 284

Query: 550 LAARDLEYKAWAHVHSLKSSLD-----EQSLELRVKTAIEAEAISQQRLAAAEAEIADMR 604
                L  K    +  L++ +          E  ++ A E  A  +  +    AEI ++ 
Sbjct: 285 GEEEQLRVKE--KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342

Query: 605 QKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNI 664
           +++E  ++    L++      EE+E   +E+E + + +        +L     + +    
Sbjct: 343 REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF---AETRDELKDYREKLEKLKR 399

Query: 665 KLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAE 724
           ++           + L  +   ++ E+Q+ +  L   +   A IE ++    ++ +  A 
Sbjct: 400 EI-----------NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAL 448

Query: 725 DRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQ 772
           +  +    LE     LS   +    ++   +  + ++ K +  L E +
Sbjct: 449 EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE 496

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 33/205 (16%), Positives = 87/205 (42%), Gaps = 7/205 (3%)

Query: 575 LELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSE 634
           L L V    E     Q+ L A   EI+ + Q+ +  +  + +L   L+    ++E   S+
Sbjct: 272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK 331

Query: 635 IETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQA 694
           ++ + +   +++ + ++L +++   +    +L  E        + L       E +++  
Sbjct: 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL-------EEQLETL 384

Query: 695 NASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSL 754
            + +   +++ A + N++     + +RL + R +    +E   K+L +     +Q     
Sbjct: 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEE 444

Query: 755 EESQSKVYKSRLTLMELQIELVKER 779
            E + +  +  L  +E  +E ++E 
Sbjct: 445 LEEELEELQEELERLEEALEELREE 469

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 35/225 (15%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 562 HVHSLKSSLDEQS-----LELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVS 616
            +  L   L + S     +E  ++   + E   ++RL   E +++ + Q++E  K ++  
Sbjct: 703 RLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKE 762

Query: 617 LSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQL 676
           L   ++   E++      +  +       +    Q   ++++ ++   ++        Q 
Sbjct: 763 LEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQ--AELSKLEEEVSRIEARLREIEQK 820

Query: 677 QDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENT 736
            + L ++K  +E EIQ+        D+K      +         +  E   +    LE  
Sbjct: 821 LNRLTLEKEYLEKEIQELQEQRI--DLKEQIKSIEKEIENLNG-KKEELEEE----LEEL 873

Query: 737 QKRLSDVRKSSVQVRGSLE--ESQSKVYKSRLTLMELQIELVKER 779
           +  L D+      ++   +  E+Q +  + ++  +E QIE  ++R
Sbjct: 874 EAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 61/364 (16%), Positives = 143/364 (39%), Gaps = 22/364 (6%)

Query: 402 DVFRRSSAVTDSKIADLGIEIQKQIDEKNRIE--MRLEEASREPGRKEIIAEFRALVSSF 459
           +    +    D  I +   ++++   E+ + E    L +  RE    E++ E  AL    
Sbjct: 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALE--- 236

Query: 460 PEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQ 519
                A++RQL+  +E    +    +++      +E+ ++E    +    ++  E  +++
Sbjct: 237 -RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE--EQLRVK 293

Query: 520 AMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRV 579
             + +L      L+  +    RE  D+ + LA  + E         L + ++E   E+  
Sbjct: 294 EKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI------DKLLAEIEELEREIEE 347

Query: 580 KTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIG 639
           +     + +  +  A  + E+ D+R +LE   ++     D LK   E++E    EI  + 
Sbjct: 348 E-RKRRDKL-TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK 405

Query: 640 QSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLN 699
           +  D +Q + Q+L +++ +     +   + G+ A+  +     +   +E + Q+      
Sbjct: 406 RELDRLQEELQRLSEELAD-----LNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460

Query: 700 FFDMKAARIE-NQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQ 758
             D+     E   L+   D+ ++      +  A  E   +   +  +    V   L+ S 
Sbjct: 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASI 520

Query: 759 SKVY 762
             V+
Sbjct: 521 QGVH 524

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 0.004
 Identities = 50/325 (15%), Positives = 133/325 (40%), Gaps = 31/325 (9%)

Query: 203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECN 262
            +L++E+++L   L +L  + + L R+L+  +   A  + +L +L+  LE   +ELEE  
Sbjct: 691 KSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELE 750

Query: 263 CKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLE 322
            +L  L+   +                     + +E   L +  +  KE +++   +   
Sbjct: 751 EELEELQERLE--------------------ELEEELESLEEALAKLKEEIEELEEKRQA 790

Query: 323 LKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQV 382
           L+   +   + L++    +      +  S  +    ++ ++E+ + E+ + +   ++L+ 
Sbjct: 791 LQEELEELEEELEEA-ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEE 849

Query: 383 EKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASRE 442
           E + L     EL  +++ ++  +        ++ +   E+++++ E       L E   E
Sbjct: 850 ELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELES---ELAELKEE 906

Query: 443 PGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECE 502
                 I + R  +      +  ++ +L + +E   + +    +   L   +ER  +E E
Sbjct: 907 ------IEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLET-ELEREIERLEEEIE 959

Query: 503 TLLASSADQVAEIHKLQAMVQDLTD 527
            L   +   + E  +++   ++L  
Sbjct: 960 ALGPVNLRAIEEYEEVEERYEELKS 984

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 49/264 (18%), Positives = 106/264 (40%), Gaps = 13/264 (4%)

Query: 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCK 264
           +++ +  L   L D   K   + +E++  +  + K K +L  L+ +L S  +E+E    +
Sbjct: 700 IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE 759

Query: 265 LAALRA---ERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLL 321
           L  L A   E +         LN     ++  R+ + Q +L  +E     +  +      
Sbjct: 760 LKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQ 819

Query: 322 ELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ 381
           +L  L   +  + +++  LQ     +K         S++ ++E    +  + +   E+L+
Sbjct: 820 KLNRLTLEKEYLEKEIQELQEQRIDLK---EQIK--SIEKEIENLNGKKEELEEELEELE 874

Query: 382 VEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASR 441
               +L  R  +L  + D ++   R     + KI +L  +I+K+    + ++ +LE    
Sbjct: 875 AALRDLESRLGDLKKERDELEAQLR---ELERKIEELEAQIEKKRKRLSELKAKLEALEE 931

Query: 442 EPGRKEIIAEFRALVSSFPEDMSA 465
           E    EI            E++S 
Sbjct: 932 E--LSEIEDPKGEDEEIPEEELSL 953

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	779
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	100.0
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.82
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.55
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.41
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	99.41
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.4
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.29
PRK02224	880	chromosome segregation protein; Provisional	99.28
PRK02224	880	chromosome segregation protein; Provisional	99.28
PRK03918	880	chromosome segregation protein; Provisional	99.18
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.17
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.16
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	99.15
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	99.11
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.98
PRK03918	880	chromosome segregation protein; Provisional	98.96
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.96
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.95
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.78
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.6
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.5
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.43
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.3
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.28
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	98.27
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.26
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.21
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	98.16
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.16
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.14
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.1
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.08
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.06
KOG4673	961	consensus Transcription factor TMF, TATA element m	98.02
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	98.01
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.0
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	98.0
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.92
PRK04778	569	septation ring formation regulator EzrA; Provision	97.92
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.89
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.89
PRK01156	895	chromosome segregation protein; Provisional	97.88
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.86
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.86
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.83
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.78
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.74
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.73
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	97.69
PRK01156	895	chromosome segregation protein; Provisional	97.67
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.62
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.58
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.51
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.44
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.42
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.41
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.35
PRK11637	428	AmiB activator; Provisional	97.3
PRK04863	1486	mukB cell division protein MukB; Provisional	97.19
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.15
PRK04778	569	septation ring formation regulator EzrA; Provision	97.15
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.14
KOG0963	629	consensus Transcription factor/CCAAT displacement	97.12
PF13514	1111	AAA_27: AAA domain	97.09
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.04
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.94
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.92
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.9
KOG0018	1141	consensus Structural maintenance of chromosome pro	96.86
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.85
PHA02562	562	46 endonuclease subunit; Provisional	96.81
PHA02562	562	46 endonuclease subunit; Provisional	96.7
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.48
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.41
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	96.37
KOG0933	1174	consensus Structural maintenance of chromosome pro	96.34
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	96.3
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.23
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	96.22
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.16
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.98
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	95.93
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	95.91
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	95.71
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	95.65
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	95.61
PRK09039	343	hypothetical protein; Validated	95.5
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.46
PRK09039	343	hypothetical protein; Validated	95.36
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	95.01
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	94.98
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	94.45
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.34
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.32
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.23
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	94.06
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	93.77
COG4942	420	Membrane-bound metallopeptidase [Cell division and	93.66
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.59
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	93.39
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	93.3
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	93.19
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	93.12
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	92.87
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	92.44
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	92.37
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	92.37
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	92.36
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	92.02
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	91.92
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	91.7
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	91.64
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	91.41
KOG1003	205	consensus Actin filament-coating protein tropomyos	91.16
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	91.05
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	90.75
KOG4807	593	consensus F-actin binding protein, regulates actin	90.3
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	90.1
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	90.0
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	89.82
PLN02939	977	transferase, transferring glycosyl groups	89.24
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	89.18
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	89.05
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.2
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	88.17
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	87.95
PF15294	278	Leu_zip: Leucine zipper	87.92
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	87.92
PF15294	278	Leu_zip: Leucine zipper	86.81
COG4942	420	Membrane-bound metallopeptidase [Cell division and	86.63
COG4372	499	Uncharacterized protein conserved in bacteria with	86.54
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	86.43
KOG1003	205	consensus Actin filament-coating protein tropomyos	86.07
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	86.0
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	85.9
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	85.84
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	85.68
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	84.94
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	84.52
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	84.24
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	84.17
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	84.09
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	83.77
KOG3850	455	consensus Predicted membrane protein [Function unk	83.57
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	83.57
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	83.24
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	83.2
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	83.16
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	83.07
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	82.89
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	82.78
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	82.72
COG2433	652	Uncharacterized conserved protein [Function unknow	82.1
COG5185	622	HEC1 Protein involved in chromosome segregation, i	81.95
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	81.79
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	81.54
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	81.5
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	81.15
PLN03188	1320	kinesin-12 family protein; Provisional	81.09
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	80.94
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	80.5
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	80.36

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-44  Score=409.99  Aligned_cols=586  Identities=26%  Similarity=0.324  Sum_probs=516.4

Q ss_pred             HHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHhhhccCCchh--hhhhhchHHHHHHHHHHHHHHHHHhHHHHHH
Q 004019          152 MEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSK--QKASSNLQSEVKNLRLALMDLHLKHKSLTRE  229 (779)
Q Consensus       152 ~e~~L~~r~~~tk~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~l~~E~~~L~~~~~~L~~k~k~l~~e  229 (779)
                      ++..|..|+.+++..++.++..+|.+....++++..+.+.     ..  ....+.|..++..||..++.+|.+|+.++.+
T Consensus         3 ~~~~~~~~i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~~-----~e~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~   77 (698)
T KOG0978|consen    3 VEEPLAGRIKSEKEAVSLVLIQIDDLQTQAEELARRLNRV-----EEALTVLFDELAEENEKLQNLADHLQEKHATLSEQ   77 (698)
T ss_pred             chhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667888999999999999999999999888888777652     11  1266779999999999999999999999999


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccCCccccCcCCCCCCCCCCccchhhhhhhHHHH
Q 004019          230 LQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERD-VTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESV  308 (779)
Q Consensus       230 ~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~-~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~  308 (779)
                      +..+.|+++...+++.++..++|+++|++++++++.+.+..-.. +..+.++||.  ||| .++|.++.+...+..+...
T Consensus        78 ~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t~~~--~~~-~~~~~~t~~~t~~~~l~~~  154 (698)
T KOG0978|consen   78 ISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNTYGN--GNG-SLSGTITVNSTELEELRDE  154 (698)
T ss_pred             HHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--ccc-ccCcccccchhhhhhhccc
Confidence            99999999999999999999999999999999999888864322 2223333322  222 2334445556679999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc--cccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          309 HKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDN  386 (779)
Q Consensus       309 ~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~--~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~  386 (779)
                      +++++.+++.|+.+|+.++..+..+..++..+++.++..  +++..|..|.+++     +...+..          ..  
T Consensus       155 iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~-----~NE~l~~----------~~--  217 (698)
T KOG0978|consen  155 IEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQ-----YNEELQR----------KT--  217 (698)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----hhhhccc----------cc--
Confidence            999999999999999999999999999999999999533  5555556666665     2211111          11  


Q ss_pred             HHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHH
Q 004019          387 LAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSA  465 (779)
Q Consensus       387 ~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~-~~~~~E~k~l~~sl~~~i~~  465 (779)
                             +    +..+++-      ...+..++..++.++.+++++..+++....+.+. .+++.||++|++++++++..
T Consensus       218 -------~----~~~e~~~------~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~  280 (698)
T KOG0978|consen  218 -------M----ESDEAIN------SKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKL  280 (698)
T ss_pred             -------c----hhhhhhc------cchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence                   1    4444432      4458999999999999999999999998888885 89999999999999999999


Q ss_pred             HHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHhhhHHHhhhhhhHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHhhcCc
Q 004019          466 MQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQ-AMVQDLTDSNLELKLILDMYRREST  544 (779)
Q Consensus       466 L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~~~~~~~eik~Lr-~q~~~l~e~~~elk~~ld~~~~~~~  544 (779)
                      |.+..++|+++.+++.+++....++...+..+..+.+.+.+++....+....+. .-+..+....++.+.+++++.+++.
T Consensus       281 l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  360 (698)
T KOG0978|consen  281 LKEYERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQ  360 (698)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence            999999999999999999999999888888877788888888888888888777 6677788888899999999999999


Q ss_pred             ChHHHHHHHHHHHH-HHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh---hHHHHHH
Q 004019          545 DSRDVLAARDLEYK-AWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMR-QKLEAFKR---DMVSLSD  619 (779)
Q Consensus       545 d~rd~~~~~~~E~k-~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~-~~l~~~~r---~~~~l~~  619 (779)
                      +.+|+........+ .+..++.++..+.+...+++++...+.+..+|+.+.....++.+++ +.+++..|   ++..+++
T Consensus       361 k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e  440 (698)
T KOG0978|consen  361 KERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSE  440 (698)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHH
Confidence            99999998888888 8899999999999988888899999999999999999999999999 88899999   8888999


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          620 ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLN  699 (779)
Q Consensus       620 ~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie  699 (779)
                      .|..+.....+|.+||+++|+||++||++|++|++++++.|++|++||+|++++++.++.|+.++..+..++.++...++
T Consensus       441 ~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~  520 (698)
T KOG0978|consen  441 ELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVD  520 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004019          700 FFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKER  779 (779)
Q Consensus       700 ~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~le~e~  779 (779)
                      .+...+.+++++++.++.....+.+++..+.+.++.+++.+.++.+.+.+|+..++++++++.+++..+++....++.++
T Consensus       521 ~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~  600 (698)
T KOG0978|consen  521 KLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEK  600 (698)
T ss_pred             HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998763

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.82  E-value=2.2e-13  Score=171.20  Aligned_cols=445  Identities=21%  Similarity=0.289  Sum_probs=292.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-ccccc-ChhHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 004019          304 DMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSS-SKAFLSVKNQLEKSKSEVFKYQAL-FEKL  380 (779)
Q Consensus       304 ~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~-~~i~~-S~~yk~L~~q~~~l~~~~~~~r~~-~e~L  380 (779)
                      .+...+++++.....=...=..+......+..++..|+..+... +.... -..-+.+..++..|+..++..... .+.+
T Consensus      1298 ~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eel 1377 (1930)
T KOG0161|consen 1298 ALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEEL 1377 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444443333333333334444444444455555444432 11110 012222333444455544433222 4444


Q ss_pred             HHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCc--------hhHHHHH
Q 004019          381 QVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR--------KEIIAEF  452 (779)
Q Consensus       381 q~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~--------~~~~~E~  452 (779)
                      ...+..+..++.+..   +..+.       +...+..+|....+++.+-+++..+++...+....        ...+.+|
T Consensus      1378 ee~kk~l~~~lq~~q---e~~e~-------~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~ 1447 (1930)
T KOG0161|consen 1378 EELKKKLQQRLQELE---EQIEA-------ANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEW 1447 (1930)
T ss_pred             HHHHHHHHHhHHHHH---HHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445544444443333   23332       26677888888888888888888888664322221        5777888


Q ss_pred             HHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHhh--------------------------------
Q 004019          453 RALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKE--------------------------------  500 (779)
Q Consensus       453 k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~e--------------------------------  500 (779)
                      +...+-+..++.+.+.+.+.   ..+++.++...+..+...+.....+                                
T Consensus      1448 k~~~e~l~~Eld~aq~e~r~---~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~l 1524 (1930)
T KOG0161|consen 1448 KKKLEKLQAELDAAQRELRQ---LSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRL 1524 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877777777777766655   3333444444444443333222211                                


Q ss_pred             ---hHHHhhhh-----hhHHHHHHHHHHHHH----------hhhhhHHHHHHHHHHHhhcCcChHHHH---HHHHHHHHH
Q 004019          501 ---CETLLASS-----ADQVAEIHKLQAMVQ----------DLTDSNLELKLILDMYRRESTDSRDVL---AARDLEYKA  559 (779)
Q Consensus       501 ---~~~l~~~~-----~~~~~eik~Lr~q~~----------~l~e~~~elk~~ld~~~~~~~d~rd~~---~~~~~E~k~  559 (779)
                         +.+|...+     ..+..+.+.++.++.          .+.+++.++    ++.++  ..++.+.   ..+.+|.+.
T Consensus      1525 e~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~----E~~rk--~~~~~i~~~q~~Le~E~r~ 1598 (1930)
T KOG0161|consen 1525 EQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEI----EELRK--NLQRQLESLQAELEAETRS 1598 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHH--HHHHHHHHHHHhhhHHHHH
Confidence               11121111     123445555554433          244444444    33333  2233222   267799999


Q ss_pred             HHHHHHHHhhhHH--hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 004019          560 WAHVHSLKSSLDE--QSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIET  637 (779)
Q Consensus       560 ~~e~~~Lk~~L~e--~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~  637 (779)
                      +.++..+|++|+.  ..++..+.++|.+..++++.++...+.+.+|+..++++.+..+++.+++...+....++.+|++.
T Consensus      1599 k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~ee 1678 (1930)
T KOG0161|consen 1599 KSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEE 1678 (1930)
T ss_pred             HHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999976  55677788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          638 IGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQ-DALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCL  716 (779)
Q Consensus       638 l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~-~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~  716 (779)
                      +....+....-+..+   ..++++     ..|++...... .++...+..++.+|..++.+++......+.+++..+...
T Consensus      1679 L~~~l~~~~Rarr~a---E~e~~E-----~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~ 1750 (1930)
T KOG0161|consen 1679 LREKLEALERARRQA---ELELEE-----LAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQ 1750 (1930)
T ss_pred             HHHHHHHHHHHHHhh---HHHHHH-----HHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            999998855444444   444445     44455554444 588999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHhhc
Q 004019          717 DQAQRLAEDRSQ---NSANLENTQKRLSDVRKSSVQVRGSLEESQS--------KVYKSRLTLMELQIELVKE  778 (779)
Q Consensus       717 ~~~~~leeel~~---~~~~le~~r~~~~e~e~~l~elr~~le~~e~--------~l~e~~~~l~E~~~~le~e  778 (779)
                      .++..+.+++..   +...+++.+..   ++..+++|+.+++.++.        ++.-+..++.++..+|+.|
T Consensus      1751 ~~a~~~~~el~~Eq~~~~~le~~k~~---LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Learir~LE~~l~~E 1820 (1930)
T KOG0161|consen 1751 ADAAKLAEELRKEQETSQKLERLKKS---LERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIRELESELEGE 1820 (1930)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHhHh
Confidence            999999999987   66667777776   99999999999998875        3666677777777777655

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.55  E-value=6.5e-16  Score=187.35  Aligned_cols=447  Identities=22%  Similarity=0.286  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccc--cChhHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 004019          305 MESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLS--SSKAFLSVKNQLEKSKSEVFK-YQALFEKLQ  381 (779)
Q Consensus       305 l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~--~S~~yk~L~~q~~~l~~~~~~-~r~~~e~Lq  381 (779)
                      |...+++++.....=...-..|...+..+..++..|+..+.+..-..  -...|..++.++.+|+..++. ....++.|.
T Consensus       241 L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelE  320 (859)
T PF01576_consen  241 LESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELE  320 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHH
Confidence            33444444443333333444455555555566666666655431111  124777888888889888885 444477788


Q ss_pred             HHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCc--------hhHHHHHH
Q 004019          382 VEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR--------KEIIAEFR  453 (779)
Q Consensus       382 ~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~--------~~~~~E~k  453 (779)
                      ..+..+...+.++.   +..+.       +...+..++....|+..+.+++..+++........        ...+.+|+
T Consensus       321 eaKKkL~~~L~el~---e~le~-------~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k  390 (859)
T PF01576_consen  321 EAKKKLERKLQELQ---EQLEE-------ANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWK  390 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHH---HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            88878877776665   33333       36788999999999999999999999885554432        57788888


Q ss_pred             HHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHh-------hhHHHhhhh------------------
Q 004019          454 ALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVK-------ECETLLASS------------------  508 (779)
Q Consensus       454 ~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~-------e~~~l~~~~------------------  508 (779)
                      .-+..+..+...++.+++.   ..++++.|+.++..+...+.....       ++.++.+++                  
T Consensus       391 ~~~~~~~~e~d~~q~e~r~---~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE  467 (859)
T PF01576_consen  391 AKVEELQAERDAAQREARE---LETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLE  467 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhHH---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHH
Confidence            8887777777777777665   455566666666555544432221       222222211                  


Q ss_pred             ---------------hhHHHHHHHHHHHHH----------hhhhhHHHHHHHHHHHhh-cCcChHHHHHHHHHHHHHHHH
Q 004019          509 ---------------ADQVAEIHKLQAMVQ----------DLTDSNLELKLILDMYRR-ESTDSRDVLAARDLEYKAWAH  562 (779)
Q Consensus       509 ---------------~~~~~eik~Lr~q~~----------~l~e~~~elk~~ld~~~~-~~~d~rd~~~~~~~E~k~~~e  562 (779)
                                     +....+-+.+|.++.          .+.+++.++    +..++ ....-+.+-..+..|++.++.
T Consensus       468 ~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~----E~~Rr~~qr~l~~le~~LE~E~k~r~~  543 (859)
T PF01576_consen  468 QEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEF----EETRRNHQRQLESLEAELEEERKERAE  543 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHhhHHHHHHHHhHHHHHHHHHHH
Confidence                           111223333333322          366666666    33332 122333444477889999999


Q ss_pred             HHHHHhhhHH--hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 004019          563 VHSLKSSLDE--QSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQ  640 (779)
Q Consensus       563 ~~~Lk~~L~e--~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~  640 (779)
                      +...|+.|+.  ..++..+.+++.+...+++.++.+..+|.+|+..++...+...++..++...+.....|.+|++.+..
T Consensus       544 ~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~  623 (859)
T PF01576_consen  544 ALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELRE  623 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999976  45566788898888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          641 SYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQ  720 (779)
Q Consensus       641 A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~  720 (779)
                      +.+..  ...+.. ...+++++...+..    ......++...+..++.++..+...++.....+..+.++.+....++.
T Consensus       624 ~~~~a--~r~rk~-aE~el~e~~~~~~~----l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~  696 (859)
T PF01576_consen  624 ALEQA--ERARKQ-AESELDELQERLNE----LTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAA  696 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHH--HHHHHH-HHHHHHHHHHHHHH----HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence            99984  444444 66677775555544    445566889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHH--------HHHHHHHHHHHHHHhhc
Q 004019          721 RLAEDRSQ---NSANLENTQKRLSDVRKSSVQVRGSLEESQSKV--------YKSRLTLMELQIELVKE  778 (779)
Q Consensus       721 ~leeel~~---~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l--------~e~~~~l~E~~~~le~e  778 (779)
                      .+..++..   ....++..|..   ++.++++|+.+++.++...        .-+..+|.++..+|+.|
T Consensus       697 ~l~~eL~~Eq~~~~~le~~k~~---LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E  762 (859)
T PF01576_consen  697 QLAEELRQEQDHNQHLEKEKKA---LERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESE  762 (859)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHH
Confidence            99999988   66667777777   9999999999999887643        34555566666666554

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.41  E-value=7.2e-06  Score=104.83  Aligned_cols=383  Identities=17%  Similarity=0.178  Sum_probs=184.9

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCcCCC
Q 004019          208 EVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGN  287 (779)
Q Consensus       208 E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~~~~~~  287 (779)
                      ...+++.....+..+.+.+..++..+.+..++.-.+.+.++..+.++..++...+.+...+.--....            
T Consensus       951 ~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kl------------ 1018 (1930)
T KOG0161|consen  951 TLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKL------------ 1018 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence            34455555555555555666666666666666666666666666666666666655554333110000            


Q ss_pred             CCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHH
Q 004019          288 KHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSK  367 (779)
Q Consensus       288 ~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~  367 (779)
                                 -..+++++..++.-+...........++.-++..+...+..++.....++     ..-+....+++.+.
T Consensus      1019 -----------e~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~-----~~l~kke~El~~l~ 1082 (1930)
T KOG0161|consen 1019 -----------EQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELD-----NQLKKKESELSQLQ 1082 (1930)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence                       00123333333332222222222222333333333333333222221110     12223334455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-c-
Q 004019          368 SEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG-R-  445 (779)
Q Consensus       368 ~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~-~-  445 (779)
                      ..++....++..++.....+..++.++.   +..++-       ....+.++.....+..+.++|.-+++....... + 
T Consensus      1083 ~k~e~e~~~~~~l~k~i~eL~~~i~el~---e~le~e-------r~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~ 1152 (1930)
T KOG0161|consen 1083 SKLEDEQAEVAQLQKQIKELEARIKELE---EELEAE-------RASRAKAERQRRDLSEELEELKEELEEQGGTTAAQL 1152 (1930)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            5666666666666666666666665554   323322       223355555555555566666555554311111 0 


Q ss_pred             ---hhHHHHHHHHHhccHHHHHHHHHHHHHhHHHh-HHHHHHHHhHHhHHHHHHh-------hHhhhHHHhhhhhhHHHH
Q 004019          446 ---KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAA-LDIHILRADVLSLTNVLER-------KVKECETLLASSADQVAE  514 (779)
Q Consensus       446 ---~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~-~e~~~l~~e~~~l~~~~~~-------~~~e~~~l~~~~~~~~~e  514 (779)
                         ..-..|+..|=..+..++...+.++..++... ..+..+...+..+...=..       ...++.++...+......
T Consensus      1153 e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~ 1232 (1930)
T KOG0161|consen 1153 ELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSE 1232 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence               45556666776677777766666665554221 1122222222222111100       001222222221111000


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHHHHHHHHHHHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHH
Q 004019          515 IHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLA  594 (779)
Q Consensus       515 ik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~~~~~E~k~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~  594 (779)
                      -..+..--+.+.....+++..++.+..      .+..+..-..+++.++..+.+++.+....  +.       .+.+...
T Consensus      1233 k~~~e~~~k~~E~~l~elq~k~~~~~~------~~~~l~~q~~~l~~E~~~l~~~lee~e~~--~~-------~~~r~~~ 1297 (1930)
T KOG0161|consen 1233 KKDLEKKDKKLEAQLSELQLKLDEQER------LRNDLTAKRSRLQNENEELSRQLEEAEAK--LS-------ALSRDKQ 1297 (1930)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhHHHHhhHhHHHHHH--HH-------HHHHHHH
Confidence            000000012223334445555555533      22234455667888888888877654431  22       2344566


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004019          595 AAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYD  643 (779)
Q Consensus       595 ~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e  643 (779)
                      ....+|.+++.+++.-.|....+...+.....+.+.|...+|.=..+..
T Consensus      1298 ~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~ 1346 (1930)
T KOG0161|consen 1298 ALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKN 1346 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778888888888888888888888888888888888877765544444

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=2.5e-06  Score=99.07  Aligned_cols=533  Identities=16%  Similarity=0.160  Sum_probs=293.5

Q ss_pred             hhchHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-ccCCcc
Q 004019          202 SSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDV-TKGAFF  280 (779)
Q Consensus       202 ~~~l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~-~~g~~~  280 (779)
                      +..|+..+..|+.....++.+...+...+........-.+..+..+...++...-.....++.++.+-..... ..|+..
T Consensus        57 ~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t~~~~~~~  136 (698)
T KOG0978|consen   57 NEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNTYGNGNGS  136 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Confidence            4557888888888888899999999999988888888999999999999999999999999999888644332 112222


Q ss_pred             ccCcCC-CCC-CC--CCCccc-------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhh
Q 004019          281 PVLNLG-NKH-VA--GDRVRD-------EQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLY------NLQNT  343 (779)
Q Consensus       281 ~~~~~~-~~~-~~--~g~~~~-------~~~~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~------~Lk~~  343 (779)
                      +|+.++ +.+ .+  .+....       ...+++.+...+.+..........+|..+-........++.      .+...
T Consensus       137 ~~~~~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~NE~l~~~  216 (698)
T KOG0978|consen  137 LSGTITVNSTELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQYNEELQRK  216 (698)
T ss_pred             cCcccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhcccc
Confidence            222211 111 11  001011       01134556667777777777777777777777777777733      33333


Q ss_pred             ccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhchHHHHhhhhhhhhhHHHhhHHHH
Q 004019          344 LKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRE-TELNMKIDLVDVFRRSSAVTDSKIADLGIEI  422 (779)
Q Consensus       344 l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~-~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l  422 (779)
                      ---.+-+.++..|..+.+-+.....+++..+.+++......+.+ ..+ .++.   ....    .+......+......+
T Consensus       217 ~~~~~e~~~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~-~~in~e~~---~L~S----sl~e~~~~l~~~~~~~  288 (698)
T KOG0978|consen  217 TMESDEAINSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLF-SSINREMR---HLIS----SLQEHEKLLKEYEREL  288 (698)
T ss_pred             cchhhhhhccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhh-hhHHHHHH---HHHH----HHHHHHHHHHHHHHHH
Confidence            21123333455688888888888888888888887777777662 222 3332   1000    0000011222222222


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHhhhH
Q 004019          423 QKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECE  502 (779)
Q Consensus       423 ~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~e~~  502 (779)
                      -....+...|+..+.-+....+  ........+....+..+..+.+--..+      +..+.+..+.+...+..+     
T Consensus       289 k~t~~~~~~lr~~~~s~~~~~~--~~~~~~e~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-----  355 (698)
T KOG0978|consen  289 KDTESDNLKLRKQHSSAADSLE--SKSRDLESLLDKIQDLISQEAELSKKL------RSKLLESAKKLKILLREK-----  355 (698)
T ss_pred             hcccchHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHH-----
Confidence            2333333444444433322222  122233333333333222222211100      000111011111111111     


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHHHHHHHHHHHHHHHHHHhhhHHhcHHHHHHHH
Q 004019          503 TLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTA  582 (779)
Q Consensus       503 ~l~~~~~~~~~eik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~~~~~E~k~~~e~~~Lk~~L~e~~~e~~vk~a  582 (779)
                         ++-......|...+.++..      .++++++||+..++++++.++     .+++++++.+.+++-......+-+.-
T Consensus       356 ---~~e~~k~~di~~~k~el~~------~~~~~le~~k~~~ke~~~~~~-----~ka~~E~e~l~q~l~~~~k~e~~e~~  421 (698)
T KOG0978|consen  356 ---DRESQKERDILVAKSELLK------TNELRLEMLKSLLKEQRDKLQ-----VKARAETESLLQRLKALDKEERSEIR  421 (698)
T ss_pred             ---HHHhhhhHhHHHHHHHHHH------HHHHHHHHHhCCCHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0001112333444443322      278899999999999998766     78999999999998765543222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-----
Q 004019          583 IEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQT---QNQQLLQ-----  654 (779)
Q Consensus       583 ~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqe---qn~rl~q-----  654 (779)
                      .-+...+.++++....+++.|+..+...+       .-+.....-..|+-.--+.+...+.++.+   .|..++.     
T Consensus       422 k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k-------~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~  494 (698)
T KOG0978|consen  422 KQALDDAERQIRQVEELSEELQKKEKNFK-------CLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKA  494 (698)
T ss_pred             hhhhHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            12333677888889999999999888875       11222222222222222233333333322   2322222     


Q ss_pred             --HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          655 --QITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSAN  732 (779)
Q Consensus       655 --q~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~  732 (779)
                        ....+..-...|+..-.........+.-.+..++.+...+..........+..+...+......+..+...+..+...
T Consensus       495 ~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~  574 (698)
T KOG0978|consen  495 NQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIE  574 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              222222222222222222444444566666666666666666666666666666666666677777777777777777


Q ss_pred             HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 004019          733 LENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELV  776 (779)
Q Consensus       733 le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~le  776 (779)
                      ++..-..+.++.....++...++....+...++..+..++..++
T Consensus       575 ~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle  618 (698)
T KOG0978|consen  575 LEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE  618 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777766666666666666666554

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.40  E-value=7.2e-07  Score=106.11  Aligned_cols=139  Identities=16%  Similarity=0.232  Sum_probs=86.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhc--hHHHHhhhhhhhhhHHHhhHHHHHHHHHHHH
Q 004019          354 KAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRE-TELNMKID--LVDVFRRSSAVTDSKIADLGIEIQKQIDEKN  430 (779)
Q Consensus       354 ~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~-~E~~~~~E--~~e~~~~~~~~~~~~~~~lE~~l~rir~erd  430 (779)
                      ........++..+.+..-++...++....+...++..+ .-+.+.-+  .-++.+.++...++++..+|.++..+..+..
T Consensus       176 ~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~  255 (775)
T PF10174_consen  176 EEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIY  255 (775)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666777888888888888888888876665544 22221111  2234566667778999999999999888888


Q ss_pred             HHHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHH
Q 004019          431 RIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLE  495 (779)
Q Consensus       431 ~L~~e~e~~~~~~~~-~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~  495 (779)
                      .|...+..+.++-.. ...+...+.-.......|..+..++.+   .-+++..+.+++..+...+.
T Consensus       256 ~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~r---k~~E~~~~qt~l~~~~~~~~  318 (775)
T PF10174_consen  256 RLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSR---KKSELEALQTRLETLEEQDS  318 (775)
T ss_pred             HHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHH
Confidence            888777655553222 233444444444555667777777766   44455555555555444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR00606 rad50 rad50

Probab=99.29  E-value=3.4e-05  Score=99.48  Aligned_cols=38  Identities=16%  Similarity=0.301  Sum_probs=26.6

Q ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHH
Q 004019          447 EIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILR  484 (779)
Q Consensus       447 ~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~  484 (779)
                      ..+.++...+.+++..+..+...+..++.....+..++
T Consensus       695 ~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~  732 (1311)
T TIGR00606       695 EFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLA  732 (1311)
T ss_pred             HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            66777778888888888888888877665544444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK02224 chromosome segregation protein; Provisional

Probab=99.28  E-value=2.3e-05  Score=97.46  Aligned_cols=48  Identities=13%  Similarity=0.256  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 004019          597 EAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDD  644 (779)
Q Consensus       597 e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~  644 (779)
                      ..++..|+.+++...+.+....+.+.......+.|..+++.+...+++
T Consensus       508 ~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~  555 (880)
T PRK02224        508 EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEE  555 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555555555555555555555555555555444433

>PRK02224 chromosome segregation protein; Provisional

Probab=99.28  E-value=2.7e-05  Score=96.81  Aligned_cols=82  Identities=9%  Similarity=0.039  Sum_probs=38.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc--ccccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVK--CLSSSKAFLSVKNQLEKSKSEVFKYQALFEK  379 (779)
Q Consensus       302 ~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~--~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~  379 (779)
                      +..+...+.++......-..++..+......+..++..|...+....  +..-+..+..|......++..++..+..+..
T Consensus       260 ~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~  339 (880)
T PRK02224        260 IEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQA  339 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555444444555555555555555555555555543221  1110123344445555555555555444444


Q ss_pred             HHHH
Q 004019          380 LQVE  383 (779)
Q Consensus       380 Lq~e  383 (779)
                      +...
T Consensus       340 ~~~~  343 (880)
T PRK02224        340 HNEE  343 (880)
T ss_pred             HHHH
Confidence            4333

>PRK03918 chromosome segregation protein; Provisional

Probab=99.18  E-value=7.5e-05  Score=92.94  Aligned_cols=29  Identities=21%  Similarity=0.236  Sum_probs=12.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          237 DAKDKAKLNRLKGELESAVKELEECNCKL  265 (779)
Q Consensus       237 ~~~~~~e~~~L~~~Le~~~~el~~~~kkl  265 (779)
                      ++....++..+..++..+...+..+...+
T Consensus       202 ~~~l~~ei~~l~~e~~~l~~~~~~~~~~l  230 (880)
T PRK03918        202 LEEVLREINEISSELPELREELEKLEKEV  230 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444433

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.17  E-value=5.8e-05  Score=90.22  Aligned_cols=300  Identities=16%  Similarity=0.193  Sum_probs=152.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCc
Q 004019          205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLN  284 (779)
Q Consensus       205 l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~~~  284 (779)
                      +.+ +...+..+..|++.+-.+..++..+++.+...+.++..+...|+.+..++.++--.|        ...|+++.++ 
T Consensus       106 l~~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L--------~~~g~~~~~~-  175 (775)
T PF10174_consen  106 LQE-LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML--------QSKGLSAEAE-  175 (775)
T ss_pred             hhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhcCCcccch-
Confidence            344 777788888888888888889999877777777777777777777777777764444        1223322111 


Q ss_pred             CCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc-------C--hh
Q 004019          285 LGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSS-------S--KA  355 (779)
Q Consensus       285 ~~~~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~-------S--~~  355 (779)
                          +   +...... .+.+++..+..+..+...+-.+...++..   +-+.+   ++.- |+ ....       .  .-
T Consensus       176 ----~---~~~~~~~-~~~~~e~~~~~le~lle~~e~~~~~~r~~---l~~~~---~~~~-~~-a~t~alq~~ie~Kd~k  239 (775)
T PF10174_consen  176 ----E---EDNEALR-RIREAEARIMRLESLLERKEKEHMEAREQ---LHRRL---QMER-DD-AETEALQTVIEEKDTK  239 (775)
T ss_pred             ----h---hhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHh---hcCC-Cc-hhHHHHHHHHHHHHHH
Confidence                0   0111111 35566666666665555555555444321   11111   1110 10 0000       0  12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHH
Q 004019          356 FLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMR  435 (779)
Q Consensus       356 yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e  435 (779)
                      +..|..-+..++.++..++..+....++|+.....+ +..   .+...      -++.++..++-.|.|--.+...+..+
T Consensus       240 i~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~l-e~~---~s~~~------~mK~k~d~~~~eL~rk~~E~~~~qt~  309 (775)
T PF10174_consen  240 IASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQL-EVY---KSHSL------AMKSKMDRLKLELSRKKSELEALQTR  309 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHH-HHH---HhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444444433344444443333 111   11111      12556777777777777777777777


Q ss_pred             HHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHhHHH----hHHHHHHHHhHHhHHHHHHhhHhhhHHHhhhhhh
Q 004019          436 LEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEA----ALDIHILRADVLSLTNVLERKVKECETLLASSAD  510 (779)
Q Consensus       436 ~e~~~~~~~~-~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~----~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~~~~  510 (779)
                      ++.+.....- ...++=++.=+.+.+.+...|+++|.+++-.    ...+.+....+..+..-......++.++.+.+..
T Consensus       310 l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~  389 (775)
T PF10174_consen  310 LETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDK  389 (775)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7664433331 2333333334455556666666666543321    1122222222222222223333356666667777


Q ss_pred             HHHHHHHHHHHHHh----hhhhHHHHHHHHHHHh
Q 004019          511 QVAEIHKLQAMVQD----LTDSNLELKLILDMYR  540 (779)
Q Consensus       511 ~~~eik~Lr~q~~~----l~e~~~elk~~ld~~~  540 (779)
                      ....|..|...+..    +.+++..+....+-+.
T Consensus       390 ~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~  423 (775)
T PF10174_consen  390 KERKINVLQKKIENLEEQLREKDRQLDEEKERLS  423 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77777777777643    4566666655555554

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.16  E-value=0.00013  Score=93.50  Aligned_cols=18  Identities=11%  Similarity=0.082  Sum_probs=7.1

Q ss_pred             hhhHHHHHHHHHHHhhhh
Q 004019          159 GIPRTKNIVSNILAAVDN  176 (779)
Q Consensus       159 r~~~tk~~l~~l~~~~~~  176 (779)
                      +...|..-+.++-+.+..
T Consensus       173 ~~~~t~~nL~r~~d~l~e  190 (1179)
T TIGR02168       173 RRKETERKLERTRENLDR  190 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333444444433333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=99.15  E-value=0.00012  Score=92.50  Aligned_cols=458  Identities=16%  Similarity=0.168  Sum_probs=238.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cC
Q 004019          205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAK----LNRLKGELESAVKELEECNCKLAALRAERDVT---KG  277 (779)
Q Consensus       205 l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e----~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~---~g  277 (779)
                      +.....+|-+..+.||...+-++.++...-|.+...+.+    +.+|+..|.++...|.....++.-++....-.   .+
T Consensus       176 ~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie  255 (1822)
T KOG4674|consen  176 SQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIE  255 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777777777777777777777777777777887    89999999999999999888887776321100   00


Q ss_pred             CccccCcCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHH
Q 004019          278 AFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFL  357 (779)
Q Consensus       278 ~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk  357 (779)
                      ...     ++-+...+  +... .-..+..++...+.+.+-=...++++..+...|.+.|..++.-+.|.     +..|.
T Consensus       256 ~~~-----~~ls~~k~--t~~s-~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~-----~~~~~  322 (1822)
T KOG4674|consen  256 SLN-----LELSKLKD--TAES-SEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDA-----SERNK  322 (1822)
T ss_pred             HHH-----HHHHHHHh--hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhH
Confidence            000     00000000  1111 14667888888999999999999999999999999999999888766     23444


Q ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHH
Q 004019          358 SVKNQLEK----SKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIE  433 (779)
Q Consensus       358 ~L~~q~~~----l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~  433 (779)
                      ...+++.-    +...+..+-..+..|+.+...-....... .....+...    +.+-+.+......|+.+++.|-.+.
T Consensus       323 e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~-~~~~~~s~~----~a~~s~~~~~~~sLtk~ys~~~~~q  397 (1822)
T KOG4674|consen  323 ENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSAT-GESSMVSEK----AALASSLIRPGSSLTKLYSKYSKLQ  397 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh-cccchhhhH----HHHHHhhcccchhHHHHHHHHHHHH
Confidence            44444333    33333344444445554443333322110 000111100    0012344455555555555555555


Q ss_pred             HHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHhH-----------HHhHHHHHHHHhHHhHHHHHHhhHh--
Q 004019          434 MRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYK-----------EAALDIHILRADVLSLTNVLERKVK--  499 (779)
Q Consensus       434 ~e~e~~~~~~~~-~~~~~E~k~l~~sl~~~i~~L~~e~~r~k-----------~~~~e~~~l~~e~~~l~~~~~~~~~--  499 (779)
                      -+++...-+..+ .+++..+...+..+.-.+..-.++..+..           .....+..+.++++++...+...-+  
T Consensus       398 qqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~ren  477 (1822)
T KOG4674|consen  398 QQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLEREN  477 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554443333332 23333333333332222222222222211           1112222233333333333321111  


Q ss_pred             -----hhHHHhhh-------------------------------------------------------------------
Q 004019          500 -----ECETLLAS-------------------------------------------------------------------  507 (779)
Q Consensus       500 -----e~~~l~~~-------------------------------------------------------------------  507 (779)
                           .+.++..+                                                                   
T Consensus       478 k~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~  557 (1822)
T KOG4674|consen  478 KLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDSTENESDSEEIISERLVEFSNINELQEKNVELLNAVRELAEKLEA  557 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccCccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 11111100                                                                   


Q ss_pred             ----------------hhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHH---------HHHHHHHHHHHHH
Q 004019          508 ----------------SADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDV---------LAARDLEYKAWAH  562 (779)
Q Consensus       508 ----------------~~~~~~eik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~---------~~~~~~E~k~~~e  562 (779)
                                      +....+.|..|...+.........+---+|||+.-..+..|.         .+.......+...
T Consensus       558 ~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~  637 (1822)
T KOG4674|consen  558 AEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRAKEKR  637 (1822)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchhHHHH
Confidence                            011223333333333333333333444446663222222221         1111111111112


Q ss_pred             HHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 004019          563 VHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSY  642 (779)
Q Consensus       563 ~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~  642 (779)
                      +..|...+.-..     +       +....+..++.++..|+..+.+.+-+..+++..+.=++...++|...|+.+....
T Consensus       638 l~qLe~~le~~~-----~-------E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~  705 (1822)
T KOG4674|consen  638 LRQLENELESYK-----K-------EKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEV  705 (1822)
T ss_pred             HHHHHHHHHHHH-----H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222100     0       2223456677777777777777777777777777777888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          643 DDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQ  692 (779)
Q Consensus       643 e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~  692 (779)
                      +.+.++|.-|...+...+.....+-.|-+.++..+..+..+...+..+-.
T Consensus       706 ~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~  755 (1822)
T KOG4674|consen  706 ETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKL  755 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888887777666666666666655555555444433

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=99.11  E-value=0.00018  Score=91.06  Aligned_cols=160  Identities=16%  Similarity=0.249  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHH----------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 004019          592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEI----------EAYLSEIETIG---QSYDDMQTQNQQLLQQITE  658 (779)
Q Consensus       592 kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~----------eaL~~Eie~l~---~A~e~lqeqn~rl~qq~~e  658 (779)
                      ++..+..+...|+.+++...+.++++...|-......          ..++..+..+.   ...-.|.+.|-+...-+.+
T Consensus      1168 k~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qE 1247 (1822)
T KOG4674|consen 1168 KLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQE 1247 (1822)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            4556667777888888888888888877665554444          33333333333   4444566777777888888


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 004019          659 RDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFC-LDQAQRLAEDRSQNSANLENTQ  737 (779)
Q Consensus       659 ~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l-~~~~~~leeel~~~~~~le~~r  737 (779)
                      +.+.-.++.++-+.....+..+..++.....++.-+...++.|+.+...+..+.+.. .....++..++..+...+....
T Consensus      1248 l~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke 1327 (1822)
T KOG4674|consen 1248 LRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKE 1327 (1822)
T ss_pred             HHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888889999999999999999999999999999999999998883333 2334444445555555555566


Q ss_pred             HHHHHHHHhHHHHH
Q 004019          738 KRLSDVRKSSVQVR  751 (779)
Q Consensus       738 ~~~~e~e~~l~elr  751 (779)
                      +.+.++...+..++
T Consensus      1328 ~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1328 NLIAELKKELNRLQ 1341 (1822)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666666665555

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.98  E-value=0.00062  Score=87.25  Aligned_cols=52  Identities=19%  Similarity=0.182  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 004019           45 FQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESC   99 (779)
Q Consensus        45 fQn~aL~rql~~~kre~~~Le~ri~~Le~rq~~~d~~L~~v~~~W~QL~~~i~~l   99 (779)
                      -+-..|..|+...++... +-.++..++.....++  +......|..+...+..+
T Consensus       191 ~~~~~L~~q~~~l~~~~e-~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~  242 (1164)
T TIGR02169       191 LIIDEKRQQLERLRRERE-KAERYQALLKEKREYE--GYELLKEKEALERQKEAI  242 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            344466666655544333 3334444444433322  233344555665555544

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK03918 chromosome segregation protein; Provisional

Probab=98.96  E-value=0.00054  Score=85.31  Aligned_cols=20  Identities=25%  Similarity=0.283  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 004019          321 LELKGLHDGRIKVLQQLYNL  340 (779)
Q Consensus       321 ~ELe~l~~e~~~l~~e~~~L  340 (779)
                      ..|+....+...+..++..+
T Consensus       231 ~~l~~~~~~~~~l~~~~~~l  250 (880)
T PRK03918        231 KELEELKEEIEELEKELESL  250 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.96  E-value=0.00071  Score=86.43  Aligned_cols=183  Identities=19%  Similarity=0.279  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 004019          588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLV  667 (779)
Q Consensus       588 ~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~  667 (779)
                      ..+.++...+.++..+...++..+..+..++..+.........|..+++.+.......++....+..++.........+.
T Consensus       734 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  813 (1163)
T COG1196         734 QLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALE  813 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445556666666666666666666666666666666666666666666655444444444444444444433333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004019          668 LEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSS  747 (779)
Q Consensus       668 ~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l  747 (779)
                      .+.-........+..++..+..++..+...+......+..++..+..+..++..+..+...+...+..++....+++..+
T Consensus       814 ~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l  893 (1163)
T COG1196         814 RELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL  893 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444445666666666666666666666666667677777777777777777777777777777777777777777


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHH
Q 004019          748 VQVRGSLEESQSKVYKSRLTLME  770 (779)
Q Consensus       748 ~elr~~le~~e~~l~e~~~~l~E  770 (779)
                      ..+...+..+...+......+..
T Consensus       894 ~~~~~~~~~~~~~~~~~~~~~~~  916 (1163)
T COG1196         894 RELESELAELKEEIEKLRERLEE  916 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766666666666665554

>TIGR00606 rad50 rad50

Probab=98.95  E-value=0.00084  Score=86.80  Aligned_cols=169  Identities=18%  Similarity=0.190  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccccccCCccccC
Q 004019          205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL-AALRAERDVTKGAFFPVL  283 (779)
Q Consensus       205 l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl-~~lk~e~~~~~g~~~~~~  283 (779)
                      +..++...+..+..|..+...+..++..+ ...+..++++.-+..++.+....+.....+. +.+..    ..| ++|. 
T Consensus       499 ~~~~i~~~~~~~~~le~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~----~~~-~~~~-  571 (1311)
T TIGR00606       499 LKKEVKSLQNEKADLDRKLRKLDQEMEQL-NHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTS----LLG-YFPN-  571 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcC-CCCC-
Confidence            44455555555666655555555555554 3344445555555555555555555444333 11211    223 2211 


Q ss_pred             cCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-cccccChhHHHHHHH
Q 004019          284 NLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSSKAFLSVKNQ  362 (779)
Q Consensus       284 ~~~~~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~-~~i~~S~~yk~L~~q  362 (779)
                                + ..-...+..+..++.++..-.+..-.++..+......+..++..++..+... ..|.....+..+..-
T Consensus       572 ----------~-~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~  640 (1311)
T TIGR00606       572 ----------K-KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESD  640 (1311)
T ss_pred             ----------c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence                      1 1123345667777777887777778888888888888888888887777644 334432234444445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          363 LEKSKSEVFKYQALFEKLQVEKDNLAWRE  391 (779)
Q Consensus       363 ~~~l~~~~~~~r~~~e~Lq~er~~~~~~~  391 (779)
                      +..++..++..+.....+.+...-|..-+
T Consensus       641 L~~~~~~l~~~~~~~~~~~~~~~~~~k~i  669 (1311)
T TIGR00606       641 LERLKEEIEKSSKQRAMLAGATAVYSQFI  669 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666677777766666666665555554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.78  E-value=0.0005  Score=78.40  Aligned_cols=172  Identities=16%  Similarity=0.193  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 004019          602 DMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALL  681 (779)
Q Consensus       602 ~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~  681 (779)
                      .+...++..+..+..+.+++.++.++...|..|+-.++..-+.   .-+.|++.--+.+.++.+|....+..........
T Consensus       280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDr---t~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~  356 (546)
T PF07888_consen  280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDR---TMAELHQARLEAAQLKLQLADASLELKEGRSQWA  356 (546)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555566777777788888888888776665433   4444554444455555555543333333333444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Q 004019          682 MDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ----NSANLENTQKRLSDVRKSSVQVRGSLEES  757 (779)
Q Consensus       682 ~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~----~~~~le~~r~~~~e~e~~l~elr~~le~~  757 (779)
                      .++..+...+......|..+...+..+++-++.=..+...++.++..    ....+-..++.+.|+...++-++...++.
T Consensus       357 qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql  436 (546)
T PF07888_consen  357 QEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQL  436 (546)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555667777777777777777666677777776654    23467777888888888888888887777


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 004019          758 QSKVYKSRLTLMELQIELV  776 (779)
Q Consensus       758 e~~l~e~~~~l~E~~~~le  776 (779)
                      ...-.++...+-.+...|+
T Consensus       437 ~~EkQeL~~yi~~Le~r~~  455 (546)
T PF07888_consen  437 QEEKQELLEYIERLEQRLD  455 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7777777776666665554

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.60  E-value=0.0049  Score=74.63  Aligned_cols=126  Identities=13%  Similarity=0.142  Sum_probs=63.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQ  381 (779)
Q Consensus       302 ~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq  381 (779)
                      +..+..++.++-.--..+.+.|..+.....+|..++....-+..+..-+.+     .....+.....+++++....++++
T Consensus       386 ~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe-----~~~~~i~~~~~ei~~L~~~~~~~~  460 (1293)
T KOG0996|consen  386 FESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPE-----KARIEIQKCQTEIEQLEELLEKEE  460 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCch-----hhHhHHHHHHHHHHHHHHHHHHHH
Confidence            455555555666666667777777777777777777777766655433322     122223333344444444444444


Q ss_pred             HHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004019          382 VEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE  438 (779)
Q Consensus       382 ~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~  438 (779)
                      .+.+..+..+ .-.  .+..-..   +...+..+..+...+.+.|++.+....++..
T Consensus       461 ~~l~e~~~~l-~~~--t~~~~~e---~~~~ekel~~~~~~~n~~~~e~~vaesel~~  511 (1293)
T KOG0996|consen  461 RELDEILDSL-KQE--TEGIREE---IEKLEKELMPLLKQVNEARSELDVAESELDI  511 (1293)
T ss_pred             HHHHHHHHHH-hhh--hhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443333332 110  0111111   1112445555666666666666666666655

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.50  E-value=0.014  Score=74.99  Aligned_cols=61  Identities=18%  Similarity=0.193  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL  265 (779)
Q Consensus       205 l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl  265 (779)
                      +.+++..|......+.+-+..+..=...+.........++..+...+.++..++.+....+
T Consensus       244 ~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  304 (1201)
T PF12128_consen  244 VRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEI  304 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555544444443444444444445555555555555555555554444

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.43  E-value=0.011  Score=70.44  Aligned_cols=126  Identities=17%  Similarity=0.184  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------hhHH
Q 004019          600 IADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDD--------------YNIK  665 (779)
Q Consensus       600 i~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd--------------~~~k  665 (779)
                      ++.|.-.+........++...-+....|-+.|..|+++...+++.....|..+-+.+.-.+-              .+.-
T Consensus       417 ~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~  496 (1195)
T KOG4643|consen  417 HEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKS  496 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444555555666666666666666666543334333322222222              1222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          666 LVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQN  729 (779)
Q Consensus       666 l~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~  729 (779)
                      |..    ....+..+...+..+..++++.....+...+++..++..+-.+...-..+-+.+..+
T Consensus       497 L~~----r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~L  556 (1195)
T KOG4643|consen  497 LNN----RDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSL  556 (1195)
T ss_pred             HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            222    344455677777777788887777777777777777777666666666555555543

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.30  E-value=0.018  Score=67.24  Aligned_cols=49  Identities=14%  Similarity=0.221  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 004019          722 LAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLME  770 (779)
Q Consensus       722 leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E  770 (779)
                      +...+..+....+.++..+..+...+..++...+.+...+...+.++.-
T Consensus       370 l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~a  418 (522)
T PF05701_consen  370 LPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEA  418 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555555555555555555555444444444444433

Several sequences in this family are described as being myosin heavy chain-like.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.28  E-value=0.017  Score=66.19  Aligned_cols=55  Identities=15%  Similarity=0.288  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNL  387 (779)
Q Consensus       321 ~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~  387 (779)
                      .+|++.+.++..|.+.+..|+...            ..|+.++..+++++...+...+.|+.....+
T Consensus       143 ~qlE~~qkE~eeL~~~~~~Le~e~------------~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel  197 (546)
T PF07888_consen  143 NQLEECQKEKEELLKENEQLEEEV------------EQLREEVERLEAELEQEEEEMEQLKQQQKEL  197 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555555555555555555442            3455555555555555555544444444333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=98.27  E-value=1.2e-06  Score=105.79  Aligned_cols=27  Identities=22%  Similarity=0.209  Sum_probs=19.3

Q ss_pred             CchhhhHHHHHHHHH-HHHHHHHHHHHHH
Q 004019           34 EEKKIDTAVLQFQNQ-KLVQKLETQKVEY   61 (779)
Q Consensus        34 ~~~~~d~~vl~fQn~-aL~rql~~~kre~   61 (779)
                      .+..-+| ++.++|= +||+.|..|=++.
T Consensus        59 ~~~~~nw-~lr~~NLk~l~~~i~~yy~e~   86 (713)
T PF05622_consen   59 EDVGDNW-RLRVSNLKKLLRNIKSYYQEE   86 (713)
T ss_dssp             SGGGG-S-HHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCccH-HHHHHHHHHHHHHHHHHHHHH
Confidence            3433456 7799996 9999999995543

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.26  E-value=0.03  Score=68.20  Aligned_cols=58  Identities=28%  Similarity=0.391  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          212 LRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR  269 (779)
Q Consensus       212 L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk  269 (779)
                      ++.....+..++..+..+++.+.....+.+...+.+...+..+..++++++++...+.
T Consensus       375 ~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e  432 (1293)
T KOG0996|consen  375 IKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELE  432 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            4444444555666667777777777777777888888888888888888877775554

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.21  E-value=2.6e-07  Score=113.01  Aligned_cols=157  Identities=15%  Similarity=0.211  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004019          589 SQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL  668 (779)
Q Consensus       589 ~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~  668 (779)
                      .-++.+.++.++.+++..++...-..+.+.........+.-.|..+++.+....+.+...|..|...   ++++...+..
T Consensus       375 LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~E---l~dl~~q~~~  451 (859)
T PF01576_consen  375 LEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDE---LEDLTSQLDD  451 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh---hccchhhhhh
Confidence            3345555666666666665544333333333333333333333344444434444444444444332   2332222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 004019          669 EGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAED----RSQNSANLENTQKRLSDVR  744 (779)
Q Consensus       669 E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leee----l~~~~~~le~~r~~~~e~e  744 (779)
                          .......|...+..|+.++..+...++.+...+...+....-+...+..+..+    +......++..|+.   +.
T Consensus       452 ----~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~---~q  524 (859)
T PF01576_consen  452 ----AGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRN---HQ  524 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh---hH
Confidence                33334455555555655555555555555555555555544444444443333    23334444555444   44


Q ss_pred             HhHHHHHHhHH
Q 004019          745 KSSVQVRGSLE  755 (779)
Q Consensus       745 ~~l~elr~~le  755 (779)
                      ..+..|...|+
T Consensus       525 r~l~~le~~LE  535 (859)
T PF01576_consen  525 RQLESLEAELE  535 (859)
T ss_dssp             -----------
T ss_pred             HHHHHHHhHHH
Confidence            44444444443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=98.16  E-value=0.031  Score=64.49  Aligned_cols=321  Identities=13%  Similarity=0.205  Sum_probs=182.4

Q ss_pred             hhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHH
Q 004019          412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLT  491 (779)
Q Consensus       412 ~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~  491 (779)
                      +..+...-..+.++..+.+--.-++..++....  ..+.+|+..+.+|++-   |..+..|++..-..+..+..++..-.
T Consensus       316 e~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s--~~v~e~qtti~~L~~l---L~~Eqqr~~~~ed~lk~l~~eLqkks  390 (786)
T PF05483_consen  316 EEDLQQATKTLIQLTEEKEAQMEELNKAKAQHS--FVVTELQTTICNLKEL---LTTEQQRLKKNEDQLKILTMELQKKS  390 (786)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            344555566666777777666666655544443  4555666666555532   34444444433333333333333222


Q ss_pred             HHH-------HhhHhhhHHHhhhhhhHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHH-HHHHHHHHH
Q 004019          492 NVL-------ERKVKECETLLASSADQV---AEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLA-ARDLEYKAW  560 (779)
Q Consensus       492 ~~~-------~~~~~e~~~l~~~~~~~~---~eik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~-~~~~E~k~~  560 (779)
                      +-+       ..+.-++..|..-++...   .+-+.+..-...++....++..+|-...+...|-..-+. ...++..-.
T Consensus       391 ~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~ys  470 (786)
T PF05483_consen  391 SELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYS  470 (786)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHH
Confidence            222       111113333433332221   222333333455777777777777766654444433332 667788888


Q ss_pred             HHHHHHHhhhHHhcH--HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHH
Q 004019          561 AHVHSLKSSLDEQSL--ELRVKTAIE---AEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEI  635 (779)
Q Consensus       561 ~e~~~Lk~~L~e~~~--e~~vk~a~e---~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Ei  635 (779)
                      .+|..||..|....+  .......+.   ......+.....-.++..++..+..+++.-..+-.++.+.+.....|+.|+
T Consensus       471 kQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrnel  550 (786)
T PF05483_consen  471 KQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNEL  550 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999875322  111111111   111222223333456666777777777777777778888888888898888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          636 ETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFC  715 (779)
Q Consensus       636 e~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l  715 (779)
                      +.+.   +++...+-.+.--+.+.++-...+..|-.+.......+...+..+..++..-...++.+.+.-..+-.+...-
T Consensus       551 es~~---eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE  627 (786)
T PF05483_consen  551 ESVK---EELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAE  627 (786)
T ss_pred             HHHH---HHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            8664   4555555566555666666666677777777777777777777777776666666666666666666665555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          716 LDQAQRLAEDRSQNSANLENTQKRL  740 (779)
Q Consensus       716 ~~~~~~leeel~~~~~~le~~r~~~  740 (779)
                      +.+...++-.+..+...+++.++..
T Consensus       628 ~kq~~~~eikVn~L~~E~e~~kk~~  652 (786)
T PF05483_consen  628 SKQSNVYEIKVNKLQEELENLKKKH  652 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            5555555555555555566555553

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.16  E-value=0.033  Score=64.84  Aligned_cols=385  Identities=15%  Similarity=0.193  Sum_probs=169.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 004019          357 LSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRL  436 (779)
Q Consensus       357 k~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~  436 (779)
                      +.++.|+--|..-.-++-.+..+||..+..+....++.+.+.|  +        +.+++..+++.|   -+-++++...+
T Consensus       102 k~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE--~--------~~srlh~le~eL---sAk~~eIf~~~  168 (1265)
T KOG0976|consen  102 KHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIE--N--------LNSRLHKLEDEL---SAKAHDIFMIG  168 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h--------hHHHHHHHHHHH---hhhhHHHHHHH
Confidence            3344444444444444455555556666555555544432221  1        134444444444   45555666666


Q ss_pred             HHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHhhhHHHhhh--------
Q 004019          437 EEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLAS--------  507 (779)
Q Consensus       437 e~~~~~~~~-~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~--------  507 (779)
                      +...-.... .....++..+.+.-..++.++.--+.+|++..-+.+..--+++.....-.....+..-|+++        
T Consensus       169 ~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~r  248 (1265)
T KOG0976|consen  169 EDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLR  248 (1265)
T ss_pred             HHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHh
Confidence            554444443 35556666776666666666666667777655443332111111110000000111111111        


Q ss_pred             --hhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHHHHHHHHHHHHHHHHHHhhhH--------------
Q 004019          508 --SADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLD--------------  571 (779)
Q Consensus       508 --~~~~~~eik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~~~~~E~k~~~e~~~Lk~~L~--------------  571 (779)
                        +..-.+..-.|..--+.+.++..+++..-+.+..+.++....+..      +..+++.+|+...              
T Consensus       249 k~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~------~qeeLd~lkqt~t~a~gdseqatkylh  322 (1265)
T KOG0976|consen  249 KTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKE------LQEELDTLKQTRTRADGDSEQATKYLH  322 (1265)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH------HHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence              111122222333333334444444444444444433333222221      1112222222211              


Q ss_pred             HhcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          572 EQSLEL--RVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQN  649 (779)
Q Consensus       572 e~~~e~--~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn  649 (779)
                      .-+++.  .+....-+..++..+......-..+|.++-+++.-++..+.+.+.+.+.+...|..++....+-.+.+-.--
T Consensus       323 ~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~i  402 (1265)
T KOG0976|consen  323 LENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHI  402 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            000000  011111122234445555566666777777777777777777777778888888887777755444433333


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          650 QQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQN  729 (779)
Q Consensus       650 ~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~  729 (779)
                      -++.+--...+...+.|           ....+....+...+..+.-+....+......+-..+..+.+-..+..-++.+
T Consensus       403 f~~e~~~~dhe~~kneL-----------~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l  471 (1265)
T KOG0976|consen  403 FRLEQGKKDHEAAKNEL-----------QEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRAL  471 (1265)
T ss_pred             hhhhhccchhHHHHHHH-----------HHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence            33333323333322222           2233333333333333333333333333333334444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004019          730 SANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIEL  775 (779)
Q Consensus       730 ~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~l  775 (779)
                      .-.++.-|+    ++.++..|+...+.--+++..++..+.++.+.+
T Consensus       472 ~~sle~qrK----Veqe~emlKaen~rqakkiefmkEeiQethldy  513 (1265)
T KOG0976|consen  472 MDSLEKQRK----VEQEYEMLKAENERQAKKIEFMKEEIQETHLDY  513 (1265)
T ss_pred             hhChhhhcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444443332    344444444444444445555555555544443

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.14  E-value=0.036  Score=64.54  Aligned_cols=356  Identities=12%  Similarity=0.114  Sum_probs=164.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 004019          363 LEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASRE  442 (779)
Q Consensus       363 ~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~  442 (779)
                      .++++..+-+...-+..|+++|+++...+-+--..++++-..+     .+....+.+.-+.|.-...++-....      
T Consensus        36 ~edlk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~-----sk~vstqetriyRrdv~llEddlk~~------  104 (1265)
T KOG0976|consen   36 HEDLKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQ-----SKKVSTQETRIYRRDVNLLEDDLKHH------  104 (1265)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhh-----cchhhHHHHHHHHHHHHHhHHHHHHH------
Confidence            4445555555666677889999998777522212222222111     12222333333333333322222221      


Q ss_pred             CCchhHHHHHHHHHhccHHHHHHHHHHHHHh----HHHhHHHHHHHHhHHhHHHHHHhhHhhhHHHhhhhhhHHHHHHHH
Q 004019          443 PGRKEIIAEFRALVSSFPEDMSAMQRQLSKY----KEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKL  518 (779)
Q Consensus       443 ~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~----k~~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~~~~~~~eik~L  518 (779)
                         ...+.+++.-+..+..+...||.-+.+|    |+.-.++..++.+++.+...+..+..+|-..-+.+.....+|.++
T Consensus       105 ---~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~  181 (1265)
T KOG0976|consen  105 ---ESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEF  181 (1265)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHH
Confidence               2344555555555555555555555433    456677888888888888888777776543333333444455555


Q ss_pred             HHHHHh----hhhhHHHHHHHHHHHhhcCcChHHHHHHHHHHHHHHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHH
Q 004019          519 QAMVQD----LTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLA  594 (779)
Q Consensus       519 r~q~~~----l~e~~~elk~~ld~~~~~~~d~rd~~~~~~~E~k~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~  594 (779)
                      ..|...    +....+.+-+.+..|+..+.....++.       .+.+.+.+.+.+-+-...  +..--+......+.+.
T Consensus       182 ~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sl-------e~~~~q~~tq~vl~ev~Q--Lss~~q~ltp~rk~~s  252 (1265)
T KOG0976|consen  182 NMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSL-------ELHKDQENTQKVLKEVMQ--LSSQKQTLTPLRKTCS  252 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH-------HHHHHHHHHHHHHHHHHH--HHHhHhhhhhHhhhhH
Confidence            555332    233333444555555544443333333       222333333322110000  0000011111112223


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHH-------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 004019          595 AAEAEIADMRQKLEAFKRDMVSLSD-------ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLV  667 (779)
Q Consensus       595 ~~e~ei~~L~~~l~~~~r~~~~l~~-------~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~  667 (779)
                      ..++...+|+...+.....+.+|+.       .+..++.-...+..|++++.+.-.....   +-.+.-.-+...|.++-
T Consensus       253 ~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~g---dseqatkylh~enmklt  329 (1265)
T KOG0976|consen  253 MIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADG---DSEQATKYLHLENMKLT  329 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHH
Confidence            3344444444444444433444433       4444455555566666665543322110   01111111223344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          668 LEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVR  744 (779)
Q Consensus       668 ~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e  744 (779)
                      .+++-..+.+...+...+.+...+..+...-+.....++.+.++.+.....+..+-..-..+.++++..+..+..++
T Consensus       330 rqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e  406 (1265)
T KOG0976|consen  330 RQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE  406 (1265)
T ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            55554555555555555555555555555555555555555555555555555555554445555555555444443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.10  E-value=0.0043  Score=65.03  Aligned_cols=183  Identities=14%  Similarity=0.223  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004019          589 SQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL  668 (779)
Q Consensus       589 ~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~  668 (779)
                      +..++..+++++..|..++......++.....|.......+......+....++..|......--..+..++.....+..
T Consensus        27 ~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~  106 (237)
T PF00261_consen   27 AEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKR  106 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            33455556666666666666665555555555555555544444444444444433333222222222222211111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004019          669 EGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSV  748 (779)
Q Consensus       669 E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~  748 (779)
                      ---.+.+.|....+....++..+..+...++.....+..++..+..+..++..++.-....+...+.+..++..+...+.
T Consensus       107 ~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lk  186 (237)
T PF00261_consen  107 RAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLK  186 (237)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            11113444444444444444444444444444444444444444444444444444333333333444444444444444


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHH
Q 004019          749 QVRGSLEESQSKVYKSRLTLMEL  771 (779)
Q Consensus       749 elr~~le~~e~~l~e~~~~l~E~  771 (779)
                      +.-.+.+.++..+..++..+..+
T Consensus       187 eaE~Rae~aE~~v~~Le~~id~l  209 (237)
T PF00261_consen  187 EAENRAEFAERRVKKLEKEIDRL  209 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.08  E-value=0.059  Score=64.58  Aligned_cols=165  Identities=20%  Similarity=0.206  Sum_probs=86.5

Q ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHH----HHHHHHHHHHHHHHHHhhhHHhcHHHHHHHHHH
Q 004019          509 ADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLA----ARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIE  584 (779)
Q Consensus       509 ~~~~~eik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~----~~~~E~k~~~e~~~Lk~~L~e~~~e~~vk~a~e  584 (779)
                      +...+.-|.|..+..++.+...-....++.+......-+-++.    +.+--..+++++..+++.|.....++  ..   
T Consensus       432 ~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~el--sr---  506 (1195)
T KOG4643|consen  432 AELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLEL--SR---  506 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---
Confidence            4445556667777666666655555555555332222211111    11111123333344444443222211  11   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhh
Q 004019          585 AEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITE-RDDYN  663 (779)
Q Consensus       585 ~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e-~dd~~  663 (779)
                          ....+.....++.....++......+..|...+.+-+.|..-|+.+|-.+..-     .||+-++-+... ++-++
T Consensus       507 ----l~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t-----~qn~~~LEq~~n~lE~~~  577 (1195)
T KOG4643|consen  507 ----LHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT-----SQNGALLEQNNNDLELIH  577 (1195)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-----hHHHHHHHHhhhHHHHHH
Confidence                11123445556666677777777777888888899999999999999888653     355554444333 33333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          664 IKLVLEGVRARQLQDALLMDKHMMESEI  691 (779)
Q Consensus       664 ~kl~~E~~k~~q~~~~l~~ek~~le~el  691 (779)
                      .++.-    .-..+.+++..++.++.++
T Consensus       578 ~elkk----~idaL~alrrhke~LE~e~  601 (1195)
T KOG4643|consen  578 NELKK----YIDALNALRRHKEKLEEEI  601 (1195)
T ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            32222    3334446777777777665

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.06  E-value=0.11  Score=66.93  Aligned_cols=18  Identities=22%  Similarity=0.211  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 004019           57 QKVEYSALENKFAQLKER   74 (779)
Q Consensus        57 ~kre~~~Le~ri~~Le~r   74 (779)
                      |+......+.+++.....
T Consensus       170 y~~r~~ea~~~L~~~~~n  187 (1163)
T COG1196         170 YKERKEEAERKLERTEEN  187 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444444444444444333

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=98.02  E-value=0.056  Score=62.18  Aligned_cols=404  Identities=16%  Similarity=0.142  Sum_probs=187.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKL  380 (779)
Q Consensus       301 ~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~L  380 (779)
                      .++.+...++.+-.....|-.+|-.....+.-|..+..++..+  +..+-.++.....|...|.+--++++   ..+..+
T Consensus       347 eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e--~~~~k~~~s~~ssl~~e~~QRva~lE---kKvqa~  421 (961)
T KOG4673|consen  347 ELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTE--DLKRKSNESEVSSLREEYHQRVATLE---KKVQAL  421 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHhhcccccchHHHHHHHHHHHH---HHHHHH
Confidence            4666777777777777788888776666666555543333322  22111222233345555444333333   233345


Q ss_pred             HHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHhcc
Q 004019          381 QVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSF  459 (779)
Q Consensus       381 q~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~-~~~~~E~k~l~~sl  459 (779)
                      -.|||++++.++.+.     .+++-+.   ....+....-.+..++.+=+.|--++-.-..-.-+ ..-+.+-..|+..+
T Consensus       422 ~kERDalr~e~kslk-----~ela~~l---~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~  493 (961)
T KOG4673|consen  422 TKERDALRREQKSLK-----KELAAAL---LKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKK  493 (961)
T ss_pred             HHhHHHHHHHHHHHH-----HHHHHhh---hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Confidence            788999988875553     2222221   13455566666667777666665554221111111 12222333455556


Q ss_pred             HHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHhhhHHHhhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 004019          460 PEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMY  539 (779)
Q Consensus       460 ~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~~~~~~~eik~Lr~q~~~l~e~~~elk~~ld~~  539 (779)
                      -+.|.-|+++..++|-...+    +.+++-   .+   .+.|..+......+..+...+++.+..+......++..+|-.
T Consensus       494 ge~i~~L~sE~~~lk~il~~----Kee~Ek---~~---~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a  563 (961)
T KOG4673|consen  494 GELITKLQSEENKLKSILRD----KEETEK---LL---QETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEA  563 (961)
T ss_pred             hhHHHHHHHHHHHHHHHhhh----HHHHHH---HH---HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence            66777777777666532110    111110   00   011222222223333444444444444444444444444444


Q ss_pred             hh-cCcChHHHH-HHHHHHHHHHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 004019          540 RR-ESTDSRDVL-AARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSL  617 (779)
Q Consensus       540 ~~-~~~d~rd~~-~~~~~E~k~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l  617 (779)
                      ++ .-+..|-.- +.++.+--+-.+|..|+..|....            -.+-++=.-.-.||.+|+..|..+.+..+++
T Consensus       564 ~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~E------------q~aarrEd~~R~Ei~~LqrRlqaaE~R~eel  631 (961)
T KOG4673|consen  564 RSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKE------------QQAARREDMFRGEIEDLQRRLQAAERRCEEL  631 (961)
T ss_pred             hhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33 001111110 111222223333555555443211            1222233445679999999999999999988


Q ss_pred             HHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-H---HHHHHHHHHHHHHHHHHHHHH
Q 004019          618 SDALKSKN----EEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLV-L---EGVRARQLQDALLMDKHMMES  689 (779)
Q Consensus       618 ~~~l~~~~----~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~-~---E~~k~~q~~~~l~~ek~~le~  689 (779)
                      --++.+..    ...++|..=+..-..||+....+-...+..-.-+-..+.... -   |-+..+-.+-+..-..-.|..
T Consensus       632 ~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sllra  711 (961)
T KOG4673|consen  632 IQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRA  711 (961)
T ss_pred             HhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHH
Confidence            88776655    455666666666667777743322222211000000000000 0   000000000011122223333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          690 EIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKR  739 (779)
Q Consensus       690 el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~  739 (779)
                      +-..+...++.-.++.......+..++..+..++.....+.+.....|++
T Consensus       712 E~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~  761 (961)
T KOG4673|consen  712 EQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRK  761 (961)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555555555555555555555444444443

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=98.01  E-value=0.00011  Score=65.71  Aligned_cols=95  Identities=15%  Similarity=0.259  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          631 YLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIEN  710 (779)
Q Consensus       631 L~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee  710 (779)
                      |++||..+.+||++...+...++..+..+++...++..|+.|+++.||++++.++.+..++..++..+......+..+.+
T Consensus         1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~   80 (96)
T PF08647_consen    1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE   80 (96)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 004019          711 QLRFCLDQAQRLAED  725 (779)
Q Consensus       711 ~lk~l~~~~~~leee  725 (779)
                      -...+...+..++++
T Consensus        81 ~E~~~~~~l~~~Eke   95 (96)
T PF08647_consen   81 TEKEFVRKLKNLEKE   95 (96)
T ss_pred             HHHHHHHHHHHhhcc
Confidence            888888777777654

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.00  E-value=0.041  Score=60.03  Aligned_cols=11  Identities=27%  Similarity=0.453  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHH
Q 004019          512 VAEIHKLQAMV  522 (779)
Q Consensus       512 ~~eik~Lr~q~  522 (779)
                      ..+|+.|+.++
T Consensus       141 eeEi~~L~~~~  151 (312)
T PF00038_consen  141 EEEIEELREQI  151 (312)
T ss_dssp             HHHHHTTSTT-
T ss_pred             hhhhhhhhhcc
Confidence            34555555544

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=98.00  E-value=1.4e-05  Score=96.63  Aligned_cols=165  Identities=13%  Similarity=0.213  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCcc-ccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 004019          321 LELKGLHDGRIKVLQQLYNLQNTLKSVK-CLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKID  399 (779)
Q Consensus       321 ~ELe~l~~e~~~l~~e~~~Lk~~l~~~~-~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E  399 (779)
                      .++..|+.++..|..++..|+..+...+ .+.  .+...+..++.++++.+++++.++.++...++.++..+.++.  .+
T Consensus       200 ~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le--~e  275 (713)
T PF05622_consen  200 KQISDLQEEKESLQSENEELQERLSQLEGSSE--EPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELE--KE  275 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhHHHhhhhhhhhhcccCCCCCCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence            3455677777888888877777765443 121  233445555666777777777776666666666655542221  12


Q ss_pred             hHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHH----------HhcCCCc----hhHHHHHHHHHhccHHHHHH
Q 004019          400 LVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEE----------ASREPGR----KEIIAEFRALVSSFPEDMSA  465 (779)
Q Consensus       400 ~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~----------~~~~~~~----~~~~~E~k~l~~sl~~~i~~  465 (779)
                      ..++.++.     ..+...-.....+|.+.|.|+-.-..          .+..-+-    +.-+.+++.-...+...+..
T Consensus       276 i~~L~q~~-----~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~  350 (713)
T PF05622_consen  276 IDELRQEN-----EELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAM  350 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22221111     11222223344455555555444333          1111111    23333333334444445566


Q ss_pred             HHHHHHHhHHHhHHHHHHHHhHHhHHHHH
Q 004019          466 MQRQLSKYKEAALDIHILRADVLSLTNVL  494 (779)
Q Consensus       466 L~~e~~r~k~~~~e~~~l~~e~~~l~~~~  494 (779)
                      |+.++.++......+..++.++.++...+
T Consensus       351 LEeel~~~~~~~~qle~~k~qi~eLe~~l  379 (713)
T PF05622_consen  351 LEEELKKARALKSQLEEYKKQIQELEQKL  379 (713)
T ss_dssp             -----------------------------
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            67777766666666666666666655554

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.92  E-value=0.018  Score=60.28  Aligned_cols=195  Identities=16%  Similarity=0.198  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 004019          558 KAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIET  637 (779)
Q Consensus       558 k~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~  637 (779)
                      ++-+++..|..+|.-...  .+..+.+       +|..+...+..+....+...|.+..+...........+.|-..+..
T Consensus        33 ~aE~e~~~l~rri~~lE~--~le~~ee-------rL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~e  103 (237)
T PF00261_consen   33 KAEAEVASLQRRIQLLEE--ELERAEE-------RLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKE  103 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHC--CCHHHHC-------CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            356667777777654332  1222222       4445555556666677777777777776666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          638 IGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLD  717 (779)
Q Consensus       638 l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~  717 (779)
                      .....++..          ...++...++..    ....+..........+..+..+...+......+..++.....+..
T Consensus       104 a~~~~ee~e----------~k~~E~~rkl~~----~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~  169 (237)
T PF00261_consen  104 AKRRAEEAE----------RKYEEVERKLKV----LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASE  169 (237)
T ss_dssp             HHHHHHHHH----------HHHHHCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----------HHHHHHHHHHHH----HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence            655555532          333333344443    444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004019          718 QAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIEL  775 (779)
Q Consensus       718 ~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~l  775 (779)
                      ....++..+..+...+...-..+...+..+..|...++.++..|...+.++..++-.|
T Consensus       170 re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el  227 (237)
T PF00261_consen  170 REDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL  227 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444555555555555555444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.92  E-value=0.1  Score=61.80  Aligned_cols=131  Identities=15%  Similarity=0.181  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 004019          625 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQL----------QDALLMDKHMMESEIQQA  694 (779)
Q Consensus       625 ~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~----------~~~l~~ek~~le~el~~~  694 (779)
                      ....+.||.=|+.=..|+.....-...+...+.....-+..+..|--..++.          ...+..++..+...+..+
T Consensus       288 ~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~  367 (569)
T PRK04778        288 QERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEI  367 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555555555555555555554444444444          445666666666666665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Q 004019          695 NASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLE  755 (779)
Q Consensus       695 ~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le  755 (779)
                      ...+.........+.+.+..+..++..+.++.......+..++..-.++...+..++..+.
T Consensus       368 ~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~  428 (569)
T PRK04778        368 TERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH  428 (569)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555555555554444444444444444444433

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.89  E-value=0.13  Score=62.33  Aligned_cols=68  Identities=18%  Similarity=0.184  Sum_probs=39.2

Q ss_pred             hhchHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          202 SSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR  269 (779)
Q Consensus       202 ~~~l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk  269 (779)
                      ...|......|+.++..++.+.-.....|....+.+..+..++.-|..+.+.+..-+...+-++..++
T Consensus      1227 i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1227 IAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34456666677777777766666665555555555555555555555555555555555544444444

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.89  E-value=0.2  Score=64.51  Aligned_cols=38  Identities=13%  Similarity=0.245  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 004019           60 EYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLE   97 (779)
Q Consensus        60 e~~~Le~ri~~Le~rq~~~d~~L~~v~~~W~QL~~~i~   97 (779)
                      .+..++.+|..|......+.+...-+..+|..|..+..
T Consensus       240 ~~~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~  277 (1201)
T PF12128_consen  240 GFEKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQ  277 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555655555555666666666666655554

>PRK01156 chromosome segregation protein; Provisional

Probab=97.88  E-value=0.18  Score=63.23  Aligned_cols=28  Identities=18%  Similarity=0.268  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 004019          511 QVAEIHKLQAMVQDLTDSNLELKLILDM  538 (779)
Q Consensus       511 ~~~eik~Lr~q~~~l~e~~~elk~~ld~  538 (779)
                      -..++..|+.++..+.....+++-..++
T Consensus       421 l~~~i~~l~~~i~~l~~~~~el~~~~~~  448 (895)
T PRK01156        421 ISSKVSSLNQRIRALRENLDELSRNMEM  448 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445566666666666555566655554

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.86  E-value=0.13  Score=61.02  Aligned_cols=78  Identities=19%  Similarity=0.246  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 004019          558 KAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIET  637 (779)
Q Consensus       558 k~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~  637 (779)
                      |+-+++..||.+|.+...- .|+--|+ ..+...+|...+--..+|..+|...+-.+..|++.++.+.++...|...-+.
T Consensus       157 RAlsQN~eLK~QL~Elq~~-Fv~ltne-~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq  234 (617)
T PF15070_consen  157 RALSQNRELKEQLAELQDA-FVKLTNE-NMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQ  234 (617)
T ss_pred             HHHHhHHHHHHHHHHHHHH-HHHHHHh-hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            6788899999999886653 2332222 3334444555454556888888888888888888888888877777665443

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.86  E-value=0.12  Score=60.55  Aligned_cols=153  Identities=14%  Similarity=0.138  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 004019          593 LAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVR  672 (779)
Q Consensus       593 l~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k  672 (779)
                      |.....++..|+.+.....-.+..|...|.....+.++...+.......+.+|...-.++................|-.+
T Consensus       318 Le~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~  397 (522)
T PF05701_consen  318 LEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEK  397 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444555555555555444444444333333333222222222223333444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 004019          673 ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAE-------DRSQNSANLENTQKRLSDVRK  745 (779)
Q Consensus       673 ~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~lee-------el~~~~~~le~~r~~~~e~e~  745 (779)
                      ........+..+..++.++..+...++..+.--...-..++.++........       .++.--..|+.+.+++.+.+.
T Consensus       398 ~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~ee  477 (522)
T PF05701_consen  398 AKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAEE  477 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHHHHHHHHHHHH
Confidence            5555555555555566666666666666555555555556655554332221       133344667777777666544

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.83  E-value=0.1  Score=61.85  Aligned_cols=86  Identities=15%  Similarity=0.270  Sum_probs=54.2

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-------HHHH
Q 004019          618 SDALKSKNEEIEAYLSEIETIGQS--------YDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQD-------ALLM  682 (779)
Q Consensus       618 ~~~l~~~~~e~eaL~~Eie~l~~A--------~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~-------~l~~  682 (779)
                      ++.+...+.+.+-|.+||+.-|..        |-++..||.||.-.+-++-|.+..-..++.|......       .|.+
T Consensus       338 kEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r  417 (1243)
T KOG0971|consen  338 KERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRR  417 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            334444467778888888875532        5678889999999999999888766665555544443       4444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 004019          683 DKHMMESEIQQANASLNFFDM  703 (779)
Q Consensus       683 ek~~le~el~~~~~~ie~~~~  703 (779)
                      .++.|..++..+...|..++.
T Consensus       418 ~kE~Lsr~~d~aEs~iadlkE  438 (1243)
T KOG0971|consen  418 QKERLSRELDQAESTIADLKE  438 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.78  E-value=0.14  Score=62.63  Aligned_cols=45  Identities=9%  Similarity=0.273  Sum_probs=28.2

Q ss_pred             hhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHH
Q 004019          412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEA  476 (779)
Q Consensus       412 ~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~  476 (779)
                      -..+.++...+.+|.                    .++..++.++.-..++|..++.++.++++.
T Consensus       206 aT~L~qi~~~~~~~~--------------------~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~  250 (1074)
T KOG0250|consen  206 ATQLEQITESYSEIM--------------------ESLDHAKELIDLKEEEIKNLKKKIKEEEEK  250 (1074)
T ss_pred             HhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            345666666666664                    444556667777777777777776665444

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.74  E-value=0.22  Score=60.11  Aligned_cols=221  Identities=15%  Similarity=0.210  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCcCC-----------CCCC--CCCCccchhhhhhhHHH
Q 004019          241 KAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLG-----------NKHV--AGDRVRDEQRDLRDMES  307 (779)
Q Consensus       241 ~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~~~~~-----------~~~~--~~g~~~~~~~~~~~l~~  307 (779)
                      ...+..|...+.....++...++++..+..++++..|..+...+..           .++.  -.++......+.+.+..
T Consensus       257 ~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~  336 (1174)
T KOG0933|consen  257 KDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRK  336 (1174)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            5666666666666677777777766666555555555442111100           0000  00001111224566777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-------c-cccccC-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          308 VHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKS-------V-KCLSSS-KAFLSVKNQLEKSKSEVFKYQALFE  378 (779)
Q Consensus       308 ~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~-------~-~~i~~S-~~yk~L~~q~~~l~~~~~~~r~~~e  378 (779)
                      .+.+.+.....+...+.+....+..+.+..+.+...+..       + .-+.++ ..-..|.+|+...+.++-.++..+.
T Consensus       337 ~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k  416 (1174)
T KOG0933|consen  337 NIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIK  416 (1174)
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777555555555555544444332       2 111111 2467888888888888877777765


Q ss_pred             HHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 004019          379 KLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSS  458 (779)
Q Consensus       379 ~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~s  458 (779)
                      ...-...-.+..++..+     .++     +++.+..-.....+..+..+.|.|...+....-..++   ...++.-...
T Consensus       417 ~a~~k~e~~~~elk~~e-----~e~-----~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~---~e~l~q~~~~  483 (1174)
T KOG0933|consen  417 QAKLKLEHLRKELKLRE-----GEL-----ATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQ---EEALKQRRAK  483 (1174)
T ss_pred             HHHHHHHHHHHHHHhhh-----hHh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch---HHHHHHHHHH
Confidence            55444433333332221     111     1123455555566667778888888888776666664   3345555566


Q ss_pred             cHHHHHHHHHHHHHhH
Q 004019          459 FPEDMSAMQRQLSKYK  474 (779)
Q Consensus       459 l~~~i~~L~~e~~r~k  474 (779)
                      |+..+..|+.++.++.
T Consensus       484 l~~~~~~lk~~~~~l~  499 (1174)
T KOG0933|consen  484 LHEDIGRLKDELDRLL  499 (1174)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777777777776554

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.73  E-value=0.2  Score=59.49  Aligned_cols=93  Identities=12%  Similarity=0.151  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 004019          679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQ  758 (779)
Q Consensus       679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e  758 (779)
                      .+..++.+...-+-.....|-++...+..+.+++..+..+-...+++....-+    ......+.......-+.--..++
T Consensus       508 el~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~q~~s----~~~et~dyk~~fa~skayaraie  583 (1243)
T KOG0971|consen  508 ELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQQPPS----VDPETFDYKIKFAESKAYARAIE  583 (1243)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCC----CchhhhHHHHHHHHhHHHHHHHH
Confidence            33344444333333445555666666666666666666666666666544210    01333344444555566666677


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 004019          759 SKVYKSRLTLMELQIEL  775 (779)
Q Consensus       759 ~~l~e~~~~l~E~~~~l  775 (779)
                      .+++.+....+..++.+
T Consensus       584 ~QlrqiEv~~a~rh~~~  600 (1243)
T KOG0971|consen  584 MQLRQIEVAQANRHMSL  600 (1243)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777777777666554

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=97.69  E-value=0.11  Score=55.41  Aligned_cols=256  Identities=19%  Similarity=0.200  Sum_probs=142.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--------ccccccChhHHHHHHHHHHHHHHHHHHH
Q 004019          303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKS--------VKCLSSSKAFLSVKNQLEKSKSEVFKYQ  374 (779)
Q Consensus       303 ~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~--------~~~i~~S~~yk~L~~q~~~l~~~~~~~r  374 (779)
                      +.+...+..+..-...-..+|...+.....|..++..|+..--.        .+||.+                   .+-
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN-------------------~Ll   83 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISN-------------------TLL   83 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHH
Confidence            55666666666555555566666666666666666666544211        133332                   111


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 004019          375 ALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRA  454 (779)
Q Consensus       375 ~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~  454 (779)
                      ..+..|..++..+.... +-      .|         +.-...|-..|.+||.+..+|...++.            |-.-
T Consensus        84 Kkl~~l~keKe~L~~~~-e~------EE---------E~ltn~L~rkl~qLr~EK~~lE~~Le~------------EqE~  135 (310)
T PF09755_consen   84 KKLQQLKKEKETLALKY-EQ------EE---------EFLTNDLSRKLNQLRQEKVELENQLEQ------------EQEY  135 (310)
T ss_pred             HHHHHHHHHHHHHHHHH-HH------HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH------------hHHH
Confidence            22333455555554333 11      11         223366777888899988888776643            2234


Q ss_pred             HHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHhhhHHHhhhhhhHHHHHHHHHHHHHhhhhhHHHHHH
Q 004019          455 LVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKL  534 (779)
Q Consensus       455 l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~~~~~~~eik~Lr~q~~~l~e~~~elk~  534 (779)
                      +++.|...|..|..+...+.   ..+..|+.+--++..++..             .+...|..|-.++.++.....-|+.
T Consensus       136 ~V~kL~k~i~~Le~e~~~~q---~~le~Lr~EKVdlEn~LE~-------------EQE~lvN~L~Kqm~~l~~eKr~Lq~  199 (310)
T PF09755_consen  136 LVNKLQKKIERLEKEKSAKQ---EELERLRREKVDLENTLEQ-------------EQEALVNRLWKQMDKLEAEKRRLQE  199 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666655553322   2233455554445544422             3445566677777666666666666


Q ss_pred             HHHHHhhcCcChHHHH---------HHHHHHH-HHHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          535 ILDMYRRESTDSRDVL---------AARDLEY-KAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMR  604 (779)
Q Consensus       535 ~ld~~~~~~~d~rd~~---------~~~~~E~-k~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~  604 (779)
                      -|+.--+.|.+|+|++         +.+.++. .++.+|.+|+.+|.....+.-.+     .+.+.+..+..-++...|+
T Consensus       200 ~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k-----~~~~~~eek~ireEN~rLq  274 (310)
T PF09755_consen  200 KLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEK-----MAQYLQEEKEIREENRRLQ  274 (310)
T ss_pred             HHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence            6776556678888876         3334443 56778888888887544431111     1133334455666777888


Q ss_pred             HHHHHHHhhHHHHHHHHhhhHH
Q 004019          605 QKLEAFKRDMVSLSDALKSKNE  626 (779)
Q Consensus       605 ~~l~~~~r~~~~l~~~l~~~~~  626 (779)
                      .+|..---....|...+..++.
T Consensus       275 r~L~~E~erreal~R~lsesEs  296 (310)
T PF09755_consen  275 RKLQREVERREALCRHLSESES  296 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8887765555555555554443

>PRK01156 chromosome segregation protein; Provisional

Probab=97.67  E-value=0.35  Score=60.61  Aligned_cols=22  Identities=9%  Similarity=0.384  Sum_probs=11.7

Q ss_pred             HHHHhccHHHHHHHHHHHHHhH
Q 004019          453 RALVSSFPEDMSAMQRQLSKYK  474 (779)
Q Consensus       453 k~l~~sl~~~i~~L~~e~~r~k  474 (779)
                      ..++..+..++..+..++..++
T Consensus       468 ~e~i~~~~~~i~~l~~~i~~l~  489 (895)
T PRK01156        468 NHIINHYNEKKSRLEEKIREIE  489 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555655555554433

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.62  E-value=0.37  Score=59.42  Aligned_cols=61  Identities=20%  Similarity=0.280  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          594 AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEA------YLSEIETIGQSYDDMQTQNQQLLQ  654 (779)
Q Consensus       594 ~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~ea------L~~Eie~l~~A~e~lqeqn~rl~q  654 (779)
                      .....+...|+..|+..-.....+...|++.+++.+.      +..+++.+..+...|...|.++..
T Consensus       752 ~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~  818 (1317)
T KOG0612|consen  752 DQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNTKMLEKQLKKLLDELAELKKQLEEENAQLRG  818 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3445667778888877777777777777766665544      666777777777777777776654

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.58  E-value=4.7e-05  Score=92.37  Aligned_cols=276  Identities=18%  Similarity=0.213  Sum_probs=22.4

Q ss_pred             HhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHhhHhhhHHHhhhhhhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 004019          456 VSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLI  535 (779)
Q Consensus       456 ~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~~~~~~~eik~Lr~q~~~l~e~~~elk~~  535 (779)
                      +..|+..+..+..++..|+.....+.-|+.++.++...+...           ..-..++..|+.++..|...-.....+
T Consensus       259 i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~-----------E~~~~el~~lq~e~~~Le~el~sW~sl  327 (722)
T PF05557_consen  259 IRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERL-----------EELEEELAELQLENEKLEDELNSWESL  327 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667777777777777776666666777777666555433           111233344444444444433333322


Q ss_pred             HHHHhhcCcChHHHHHHHHHHHHHHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 004019          536 LDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMV  615 (779)
Q Consensus       536 ld~~~~~~~d~rd~~~~~~~E~k~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~  615 (779)
                      +.-.......|.++...+.   .++.+...|..++.....  .++.+..........+..+..++..++..+...+....
T Consensus       328 ~~~~~~~~~sPe~l~~~l~---~lq~~~~~L~ek~g~~~~--~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~  402 (722)
T PF05557_consen  328 LQDIGLEFDSPEDLARALV---QLQQENASLTEKLGSLQS--ELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIR  402 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhcCCCCCCCHHHHHHHHH---HHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2221100112333333111   122233333333332222  12222222222233334444555555555555544444


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          616 SLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQAN  695 (779)
Q Consensus       616 ~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~  695 (779)
                      .+..+..-...|.+.|.+=++.+..-...++..+. ..+......+.              ...+..-+..++..+..+.
T Consensus       403 RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~-~~~~~~~~~~l--------------~~~~~~~~~ele~~l~~l~  467 (722)
T PF05557_consen  403 RLERQKALATKERDYLRAQLKSYDKEETTMNPSEQ-DTQRIKEIEDL--------------EQLVDEYKAELEAQLEELE  467 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchh-HHHHHhhHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence            44444444455555555555444332211111100 00011111111              1111222223333445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHH
Q 004019          696 ASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVY  762 (779)
Q Consensus       696 ~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~  762 (779)
                      ..+..+.......+..+..+..........+......+..++.++.+++..+..|+..+..++.++.
T Consensus       468 ~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~  534 (722)
T PF05557_consen  468 EELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELE  534 (722)
T ss_dssp             --------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555544444443333323334455555666666666666666666665555554

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.51  E-value=0.33  Score=56.19  Aligned_cols=58  Identities=17%  Similarity=0.244  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004019          717 DQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIE  774 (779)
Q Consensus       717 ~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~  774 (779)
                      -+...+..+-..+++.++.-+.++.+.++++.-++..++..+..+..+.....+.+..
T Consensus       704 ~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~  761 (961)
T KOG4673|consen  704 IQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRK  761 (961)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666677777777777777777777777777777777766666655555443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.44  E-value=0.56  Score=57.22  Aligned_cols=153  Identities=18%  Similarity=0.219  Sum_probs=79.9

Q ss_pred             hhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccC----ccccccC-----hhHHHHHHHHHHHHH
Q 004019          301 DLRDMESVHKELMDQASH---QLLELKGLHDGRIKVLQQLYNLQNTLKS----VKCLSSS-----KAFLSVKNQLEKSKS  368 (779)
Q Consensus       301 ~~~~l~~~~eE~~~la~~---Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~----~~~i~~S-----~~yk~L~~q~~~l~~  368 (779)
                      .|.+|+..+.+.+.+...   -...+++|-.....|.+++..+...|.-    ++.|.++     .....|+..+..|..
T Consensus      1202 ~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~ 1281 (1758)
T KOG0994|consen 1202 RFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLT 1281 (1758)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHH
Confidence            478888889988888733   3455555555555555555555554442    1222222     345566777777777


Q ss_pred             HHHHHHHHHHHHHHH---------HHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004019          369 EVFKYQALFEKLQVE---------KDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEA  439 (779)
Q Consensus       369 ~~~~~r~~~e~Lq~e---------r~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~  439 (779)
                      .+.++++.+++|+..         |.+|.+          +.++.+++-+ +-..+......- |+-.-.+....+|.. 
T Consensus      1282 ~~keL~e~~~~ik~sdi~GA~~~~r~a~~~----------s~ea~~r~~~-s~~~l~s~~~~s-R~e~l~~k~k~~f~~- 1348 (1758)
T KOG0994|consen 1282 TYKELREQLEKIKESDILGAFNSTRHAYEQ----------SAEAERRVDA-SSRELASLVDQS-RVEELLVKQKGDFGG- 1348 (1758)
T ss_pred             HHHHHHHHHHHhhccCchhHHHHHHHHHHH----------HHHHHHhhhh-hhhcccchhhhh-HHHHHHHHhhhcccc-
Confidence            777777777776543         333322          2333333311 111222222222 332222333333322 


Q ss_pred             hcCCCchhHHHHHHHHHhccHHHHHHHHHHH
Q 004019          440 SREPGRKEIIAEFRALVSSFPEDMSAMQRQL  470 (779)
Q Consensus       440 ~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~  470 (779)
                        ..+..+.+.+++..+.+|.  +..+-.+|
T Consensus      1349 --~~~n~~~L~el~~~l~sL~--L~~lne~v 1375 (1758)
T KOG0994|consen 1349 --LAENSRLLVELRAELSSLP--LTPLNEQV 1375 (1758)
T ss_pred             --cccccHHHHHHHHHhcCCC--CchhhHHh
Confidence              2222578888888888877  55555444

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.42  E-value=0.22  Score=57.39  Aligned_cols=108  Identities=19%  Similarity=0.227  Sum_probs=71.1

Q ss_pred             hchHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcccc
Q 004019          203 SNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPV  282 (779)
Q Consensus       203 ~~l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~  282 (779)
                      .....|+..++..++........+              +.++..|..+++++...|.++.+.....+....-        
T Consensus        88 ~~ye~El~~ar~~l~e~~~~ra~~--------------e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~--------  145 (546)
T KOG0977|consen   88 AKYEAELATARKLLDETARERAKL--------------EIEITKLREELKELRKKLEKAEKERRGAREKLDD--------  145 (546)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH--------
Confidence            335667777777777776666666              5555555666666666666665544322211100        


Q ss_pred             CcCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 004019          283 LNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV  347 (779)
Q Consensus       283 ~~~~~~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~  347 (779)
                                     ....+.++++++.-++..-..=..++..|..+|..|..++..++..+.+.
T Consensus       146 ---------------~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E  195 (546)
T KOG0977|consen  146 ---------------YLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE  195 (546)
T ss_pred             ---------------HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                           00125667777777777777777888888899999999999888887765

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.41  E-value=0.076  Score=63.75  Aligned_cols=114  Identities=15%  Similarity=0.235  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 004019          588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLV  667 (779)
Q Consensus       588 ~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~  667 (779)
                      .|.++.+..|.|+..||..|...+..+..|+..+.....-...=..|+|.|-.|...||+.|.+|-.-+.-=..+...|+
T Consensus       542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLf  621 (697)
T PF09726_consen  542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLF  621 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            47778889999999999999888887777777662111110001347888888888999999999877776666555565


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          668 LEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARI  708 (779)
Q Consensus       668 ~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~  708 (779)
                      +       .+-..+++++.+...+..=..+|..++++|..+
T Consensus       622 s-------aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~  655 (697)
T PF09726_consen  622 S-------ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL  655 (697)
T ss_pred             H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5       222444555555555555555555555554443

; GO: 0016021 integral to membrane

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.35  E-value=0.5  Score=54.59  Aligned_cols=26  Identities=35%  Similarity=0.440  Sum_probs=14.5

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004019          413 SKIADLGIEIQKQIDEKNRIEMRLEE  438 (779)
Q Consensus       413 ~~~~~lE~~l~rir~erd~L~~e~e~  438 (779)
                      ...+.++.++.+++.+.++|+..++.
T Consensus       106 ~~ra~~e~ei~kl~~e~~elr~~~~~  131 (546)
T KOG0977|consen  106 RERAKLEIEITKLREELKELRKKLEK  131 (546)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            34455555555555555555555554

>PRK11637 AmiB activator; Provisional

Probab=97.30  E-value=0.23  Score=56.79  Aligned_cols=35  Identities=6%  Similarity=0.340  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 004019          590 QQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSK  624 (779)
Q Consensus       590 ~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~  624 (779)
                      +.+|...+.+|..+..+++..+..+..++..+...
T Consensus        88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444443333333333333333333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.19  E-value=1.6  Score=57.11  Aligned_cols=43  Identities=12%  Similarity=0.080  Sum_probs=26.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004019          303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLK  345 (779)
Q Consensus       303 ~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~  345 (779)
                      ++|...++...+-......++..+.++...+...+..+.....
T Consensus       438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~  480 (1486)
T PRK04863        438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQ  480 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555666665566666666666666666666666665544

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.15  E-value=0.56  Score=51.13  Aligned_cols=98  Identities=14%  Similarity=0.137  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 004019          320 LLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKID  399 (779)
Q Consensus       320 l~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E  399 (779)
                      +.-...|..+|..|..++..++......    .+..+..+..++..++..++.+..+-..|+.+.+.+...+.++..+.+
T Consensus        17 IekVr~LE~~N~~Le~~i~~~~~~~~~~----~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e   92 (312)
T PF00038_consen   17 IEKVRFLEQENKRLESEIEELREKKGEE----VSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYE   92 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHhccccc----CcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHH
Confidence            3455667788888888888888775322    134667778888888888888888888888888888777777764443


Q ss_pred             hHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHH
Q 004019          400 LVDVFRRSSAVTDSKIADLGIEIQKQIDEKNR  431 (779)
Q Consensus       400 ~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~  431 (779)
                      ..          ......++.++..+|.+.|.
T Consensus        93 ~e----------~~~~~~le~el~~lrk~ld~  114 (312)
T PF00038_consen   93 EE----------LAERKDLEEELESLRKDLDE  114 (312)
T ss_dssp             HH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HH----------HHHHHHHHHHHhhhhhhhhh
Confidence            22          23445555666665544443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.15  E-value=0.94  Score=53.74  Aligned_cols=71  Identities=11%  Similarity=0.065  Sum_probs=40.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKL  380 (779)
Q Consensus       301 ~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~L  380 (779)
                      .|+.++...   ..+...++..++.+-.+-...                +. .-.|...+..+..+...++.+...+..+
T Consensus        65 ~f~~w~~~~---~~i~~~~~~~ie~~l~~ae~~----------------~~-~~~f~~a~~~~~~~~~~l~~~e~~~~~i  124 (569)
T PRK04778         65 KFEEWRQKW---DEIVTNSLPDIEEQLFEAEEL----------------ND-KFRFRKAKHEINEIESLLDLIEEDIEQI  124 (569)
T ss_pred             HHHHHHHHH---HHHHHhhhhhHHHHHHHHHHH----------------Hh-cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356665544   444566666666543222221                11 2345566666777777777777776666


Q ss_pred             HHHHHHHHHHH
Q 004019          381 QVEKDNLAWRE  391 (779)
Q Consensus       381 q~er~~~~~~~  391 (779)
                      ..+.+.+..+.
T Consensus       125 ~~~l~~l~~~e  135 (569)
T PRK04778        125 LEELQELLESE  135 (569)
T ss_pred             HHHHHHHHHHH
Confidence            66666665554

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.14  E-value=0.0027  Score=77.24  Aligned_cols=133  Identities=26%  Similarity=0.307  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCcCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHH
Q 004019          239 KDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASH  318 (779)
Q Consensus       239 ~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~  318 (779)
                      ..+.++..+..+++..+.++...+.++..|+...........     ..+....        .+....... .+......
T Consensus       189 ~l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~-----~i~~Le~--------el~~~~~~~-~i~k~l~~  254 (722)
T PF05557_consen  189 SLESELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQ-----KIKELEA--------ELKDQESDA-EINKELKE  254 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHH--------HHHhHhhHH-HHHHHHHH
Confidence            336777777777777777777777777666532111111000     0000000        000000000 11112234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 004019          319 QLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKS---KSEVFKYQALFEKLQVEKDNL  387 (779)
Q Consensus       319 Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l---~~~~~~~r~~~e~Lq~er~~~  387 (779)
                      ++..+..|..+|..+..++..|+.-..+..++.+  ....|+.++..+   +.++..++.....|+.++..|
T Consensus       255 ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeE--e~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW  324 (722)
T PF05557_consen  255 QLAHIRELEKENRRLREELKHLRQSQENVELLEE--EKRSLQRKLERLEELEEELAELQLENEKLEDELNSW  324 (722)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667778888888888888888877777666663  555666665543   333334444444444444443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=97.12  E-value=0.86  Score=52.77  Aligned_cols=77  Identities=19%  Similarity=0.317  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          582 AIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDA----LKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT  657 (779)
Q Consensus       582 a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~----l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~  657 (779)
                      +-+.+-..+.++..++.-|..|+..+.++.....+++..    ...+..+.++.+.|++.-.+-..+++..+..|..|+.
T Consensus       187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~  266 (629)
T KOG0963|consen  187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA  266 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444566677888888888888888888888777775    7777777788888777777777777777666666554


Q ss_pred             H
Q 004019          658 E  658 (779)
Q Consensus       658 e  658 (779)
                      .
T Consensus       267 ~  267 (629)
T KOG0963|consen  267 K  267 (629)
T ss_pred             h
Confidence            4

>PF13514 AAA_27: AAA domain

Probab=97.09  E-value=1.7  Score=55.74  Aligned_cols=137  Identities=12%  Similarity=0.109  Sum_probs=74.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCccc---cc------------------------
Q 004019          301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTL--KSVKC---LS------------------------  351 (779)
Q Consensus       301 ~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l--~~~~~---i~------------------------  351 (779)
                      .+..+...+.++..-...--..+..+..+...+..++..|...-  -+++-   .+                        
T Consensus       453 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t~~~l~~aR~~Rd~~W~~~~~~~~~~~~fe~a~  532 (1111)
T PF13514_consen  453 TVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPTEEELAAARARRDAAWQLAALDAALAEAFEAAV  532 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCccccHHHHHHHH
Confidence            45555556655555555555566666666666666666665431  01000   00                        


Q ss_pred             -cC--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhhhhch
Q 004019          352 -SS--------------KAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETE----------------LNMKIDL  400 (779)
Q Consensus       352 -~S--------------~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E----------------~~~~~E~  400 (779)
                       ..              ..+..+..++......+.+....+..+......+...-..                |....+ 
T Consensus       533 ~~aD~laD~~~~~a~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g~p~~p~~~~~Wl~~~~-  611 (1111)
T PF13514_consen  533 READELADRRLREAERAARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAAAGLPLSPAEMRDWLARRE-  611 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH-
Confidence             00              1455555666666666666666666666666665433211                211111 


Q ss_pred             HHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004019          401 VDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG  444 (779)
Q Consensus       401 ~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~  444 (779)
                            .....-..+...+..+.+++..+..+...+.......+
T Consensus       612 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~  649 (1111)
T PF13514_consen  612 ------AALEAAEELRAARAELEALRARRAAARAALAAALAALG  649 (1111)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                  11112345566777777788888888888877655554

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.04  E-value=0.73  Score=55.54  Aligned_cols=50  Identities=20%  Similarity=0.225  Sum_probs=37.7

Q ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004019          510 DQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDE  572 (779)
Q Consensus       510 ~~~~eik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~~~~~E~k~~~e~~~Lk~~L~e  572 (779)
                      .-+.+|+.||+.+....+.+.+|+.-+.++..             .|..++.++..++...+.
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~-------------~Er~lk~eL~qlr~ene~  471 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQISSLTN-------------NERSLKSELSQLRQENEQ  471 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc-------------cchHHHHHHHHHHHHHHH
Confidence            44679999999999999999999999888854             334466666666665554

; GO: 0016021 integral to membrane

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.94  E-value=1.4  Score=52.19  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=11.7

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHH
Q 004019          620 ALKSKNEEIEAYLSEIETIGQSY  642 (779)
Q Consensus       620 ~l~~~~~e~eaL~~Eie~l~~A~  642 (779)
                      .+.........|..|++.+.+.|
T Consensus       314 ~l~~~~~~~~~l~~e~~~v~~sY  336 (560)
T PF06160_consen  314 YLEHAKEQNKELKEELERVSQSY  336 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            44444455555555555555544

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.92  E-value=1.9  Score=53.47  Aligned_cols=87  Identities=17%  Similarity=0.261  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004019          592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGV  671 (779)
Q Consensus       592 kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~  671 (779)
                      +|...++++..+...|...+--...+...+--.+.++++|.+-.       -..+       .-..+.......++.+..
T Consensus       694 ~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~-------~~~~-------~~~~~l~r~~~~~~~~vl  759 (1317)
T KOG0612|consen  694 RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDY-------KQSQ-------EKLNELRRSKDQLITEVL  759 (1317)
T ss_pred             HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhh-------hhhc-------cchhhhhhhHHHHHHHHH
Confidence            44444666666666665554333333333333333333333322       1111       233344444455555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 004019          672 RARQLQDALLMDKHMMESEIQ  692 (779)
Q Consensus       672 k~~q~~~~l~~ek~~le~el~  692 (779)
                      +....+......+..+..++.
T Consensus       760 ~Lq~~LEqe~~~r~~~~~eLs  780 (1317)
T KOG0612|consen  760 KLQSMLEQEISKRLSLQRELK  780 (1317)
T ss_pred             HHHHHHHHHHHHhhhhHHHhh
Confidence            666666666666666666665

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.90  E-value=1.5  Score=51.91  Aligned_cols=38  Identities=16%  Similarity=0.167  Sum_probs=25.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          354 KAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRE  391 (779)
Q Consensus       354 ~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~  391 (779)
                      -.|...+..+..+...++.+...+..+..+.+.+....
T Consensus        94 ~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e  131 (560)
T PF06160_consen   94 YRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESE  131 (560)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666677777777777777777777776665554

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.86  E-value=2  Score=52.72  Aligned_cols=157  Identities=17%  Similarity=0.232  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH-----HHHhh
Q 004019          594 AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYD--------DMQTQNQQLLQQ-----ITERD  660 (779)
Q Consensus       594 ~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e--------~lqeqn~rl~qq-----~~e~d  660 (779)
                      ...+..|+..+.........++.++.++.+.+.-.+++..||+...+-|.        +.++.+ +|..+     +.+++
T Consensus       306 ~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~-rlk~ea~~~~~~el~  384 (1141)
T KOG0018|consen  306 EEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYE-RLKEEACKEALEELE  384 (1141)
T ss_pred             HHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHH-HHHHHHhhhhHHHHH
Confidence            33333334444444444444444555555557788888888888877554        111111 11100     33344


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          661 DYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRL  740 (779)
Q Consensus       661 d~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~  740 (779)
                      -.|..+..    ....+....+....++..+..+...++........+...+..+......+..++..+...+...+.+.
T Consensus       385 ~ln~~~r~----~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~  460 (1141)
T KOG0018|consen  385 VLNRNMRS----DQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEP  460 (1141)
T ss_pred             HHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhH
Confidence            44444444    33333344445555566666666665555555555555555555555555555555555555555555


Q ss_pred             HHHHHhHHHHHHhHH
Q 004019          741 SDVRKSSVQVRGSLE  755 (779)
Q Consensus       741 ~e~e~~l~elr~~le  755 (779)
                      -++...+.+...++.
T Consensus       461 ~e~n~eL~~~~~ql~  475 (1141)
T KOG0018|consen  461 YELNEELVEVLDQLL  475 (1141)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555554444443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.85  E-value=1.7  Score=51.75  Aligned_cols=156  Identities=17%  Similarity=0.205  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCcCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHH
Q 004019          241 KAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQL  320 (779)
Q Consensus       241 ~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~Rl  320 (779)
                      -.++..|..+.+.....+...++.|..|+.+-.... .  |.+       +    ...+..-..|..+++.++       
T Consensus        35 seev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~-~--~~~-------p----a~pse~E~~Lq~E~~~L~-------   93 (617)
T PF15070_consen   35 SEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP-P--PEP-------P----AGPSEVEQQLQAEAEHLR-------   93 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-C--ccc-------c----ccchHHHHHHHHHHHHHH-------
Confidence            455555566777777777777777777765432221 1  111       0    001111123444443332       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 004019          321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDL  400 (779)
Q Consensus       321 ~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~  400 (779)
                      .+++.|...+......+..|-.....-+     .....|...+..+.........+++.++.++....+.+....     
T Consensus        94 kElE~L~~qlqaqv~~ne~Ls~L~~EqE-----erL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~-----  163 (617)
T PF15070_consen   94 KELESLEEQLQAQVENNEQLSRLNQEQE-----ERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNR-----  163 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHH-----
Confidence            2444444444444443333311100000     011122233333444444444555666666666655542221     


Q ss_pred             HHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 004019          401 VDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRL  436 (779)
Q Consensus       401 ~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~  436 (779)
                               .++.++..++.-|..+-++.-+|...+
T Consensus       164 ---------eLK~QL~Elq~~Fv~ltne~~elt~~l  190 (617)
T PF15070_consen  164 ---------ELKEQLAELQDAFVKLTNENMELTSAL  190 (617)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHhhhHhhHHH
Confidence                     236788888888888888875554444

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.81  E-value=1  Score=53.17  Aligned_cols=98  Identities=11%  Similarity=0.185  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          627 EIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAA  706 (779)
Q Consensus       627 e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~  706 (779)
                      ....|.++++.+..+..+++....++.....+..+....+..    ....+.++......++.++..++.........+.
T Consensus       307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~----~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~  382 (562)
T PHA02562        307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKIST----NKQSLITLVDKAKKVKAAIEELQAEFVDNAEELA  382 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Confidence            444444444444444444444444444344444443333333    4444445555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 004019          707 RIENQLRFCLDQAQRLAEDRSQ  728 (779)
Q Consensus       707 ~~ee~lk~l~~~~~~leeel~~  728 (779)
                      .+.+++..+...+..+.++...
T Consensus       383 ~l~~~l~~~~~~~~~~~ke~~~  404 (562)
T PHA02562        383 KLQDELDKIVKTKSELVKEKYH  404 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555433

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.70  E-value=1.1  Score=52.84  Aligned_cols=6  Identities=17%  Similarity=0.706  Sum_probs=2.2

Q ss_pred             HHhhhh
Q 004019          522 VQDLTD  527 (779)
Q Consensus       522 ~~~l~e  527 (779)
                      +..++.
T Consensus       176 ~~e~~~  181 (562)
T PHA02562        176 IRELNQ  181 (562)
T ss_pred             HHHHHH
Confidence            333333

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.48  E-value=2.6  Score=49.03  Aligned_cols=106  Identities=18%  Similarity=0.184  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          666 LVLEGVRARQLQDALLMDKHMMESEIQQANAS--------LNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQ  737 (779)
Q Consensus       666 l~~E~~k~~q~~~~l~~ek~~le~el~~~~~~--------ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r  737 (779)
                      +|+|=..+++.+..+.+++..+..++...+..        ++.....+-..+..+..|...+..++.-   +...++.|.
T Consensus       240 im~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S---~~~e~e~~~  316 (629)
T KOG0963|consen  240 IMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEAS---LVEEREKHK  316 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            34444457777777888888888888776654        3444555555566666666666665544   667788999


Q ss_pred             HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004019          738 KRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIEL  775 (779)
Q Consensus       738 ~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~l  775 (779)
                      ..+..++.++..+...+++...+++.. -.+.+++.+|
T Consensus       317 ~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~EL  353 (629)
T KOG0963|consen  317 AQISALEKELKAKISELEELKEKLNSR-SDYEEIKKEL  353 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHH
Confidence            999999999999999999988888765 4566666554

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.41  E-value=0.98  Score=47.02  Aligned_cols=115  Identities=18%  Similarity=0.257  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          624 KNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNI---KLVLEGVRARQLQDALLMDKHMMESEIQQANASLNF  700 (779)
Q Consensus       624 ~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~---kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~  700 (779)
                      ...+-+++...++.+..++++|..|-.++-..+.+......   ..+ -.++....+..|..++..+..++.++...+..
T Consensus        36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~  114 (239)
T COG1579          36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAE  114 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555556666666666665555544443332221   112 33445566666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          701 FDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKR  739 (779)
Q Consensus       701 ~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~  739 (779)
                      ....+..+++.+..+...+..++..+......++.--..
T Consensus       115 l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~  153 (239)
T COG1579         115 LMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAE  153 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666655554444443333

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=96.37  E-value=1  Score=44.99  Aligned_cols=160  Identities=19%  Similarity=0.284  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 004019          595 AAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRAR  674 (779)
Q Consensus       595 ~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~  674 (779)
                      ....+|..+|..+...+.....+..+|..++.=.+.|.-      .-|++++-.|..+...+.+++.-..+|-.=-.+.-
T Consensus         3 ~k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~------iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v   76 (177)
T PF13870_consen    3 QKRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHL------IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTV   76 (177)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788888999988888888888888877776666432      24889999999999888888776666554333455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
Q 004019          675 QLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSA------------NLENTQKRLSD  742 (779)
Q Consensus       675 q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~------------~le~~r~~~~e  742 (779)
                      +.+.-.++....+..+...+...+......+..+.+.+..+..+...+......+..            .|......+.+
T Consensus        77 ~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~  156 (177)
T PF13870_consen   77 QILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEE  156 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence            555566666666666777777777777777777777777776666666666555332            34444444455


Q ss_pred             HHHhHHHHHHhHHHHHHH
Q 004019          743 VRKSSVQVRGSLEESQSK  760 (779)
Q Consensus       743 ~e~~l~elr~~le~~e~~  760 (779)
                      +...+..++..++.++..
T Consensus       157 l~~~i~~l~rk~~~l~~~  174 (177)
T PF13870_consen  157 LRKEIKELERKVEILEMR  174 (177)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            555555555554444443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.34  E-value=4  Score=49.80  Aligned_cols=109  Identities=10%  Similarity=0.042  Sum_probs=61.0

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          620 ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLN  699 (779)
Q Consensus       620 ~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie  699 (779)
                      .+...+++......+|+.+..-|+=+..+...+..+=...|- ...=++          ...++...|......+...++
T Consensus       914 e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf-~~~~p~----------~are~l~~Lq~k~~~l~k~vn  982 (1174)
T KOG0933|consen  914 EVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDF-ESYDPH----------EAREELKKLQEKKEKLEKTVN  982 (1174)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCcccc-ccCCHh----------HHHHHHHHhhHHHHHHHhhcC
Confidence            344446666777777777777777666665555532222221 111111          233344444444444444444


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          700 FF-DMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKR  739 (779)
Q Consensus       700 ~~-~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~  739 (779)
                      -. ...+.+.|+....+...+..++.+.......++.+-.+
T Consensus       983 ~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~ 1023 (1174)
T KOG0933|consen  983 PKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEK 1023 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            33 35667778888888888888887776666666655443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.30  E-value=3  Score=48.01  Aligned_cols=15  Identities=20%  Similarity=0.178  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHhhhHH
Q 004019          558 KAWAHVHSLKSSLDE  572 (779)
Q Consensus       558 k~~~e~~~Lk~~L~e  572 (779)
                      +++.++++||++|+.
T Consensus       312 ~lq~~~d~Lk~~Ie~  326 (581)
T KOG0995|consen  312 KLQKENDELKKQIEL  326 (581)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            355556677776654

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.23  E-value=1.5  Score=43.79  Aligned_cols=34  Identities=24%  Similarity=0.259  Sum_probs=15.3

Q ss_pred             HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004019          739 RLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQ  772 (779)
Q Consensus       739 ~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~  772 (779)
                      .+.+....+.++..-++.+.....+++..+..+.
T Consensus       152 ~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LE  185 (193)
T PF14662_consen  152 ILSERTQQIEELKKTIEEYRSITEELRLEKSRLE  185 (193)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444433

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=96.22  E-value=2.3  Score=45.74  Aligned_cols=123  Identities=18%  Similarity=0.191  Sum_probs=64.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHHHh
Q 004019          417 DLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLER  496 (779)
Q Consensus       417 ~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~~~  496 (779)
                      .....|-++|.+.=+|...++            .|-..||+.|.++|..|.++.+.+....      ...+.....    
T Consensus       153 ~~q~~le~Lr~EKVdlEn~LE------------~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l------~~~~s~~~s----  210 (310)
T PF09755_consen  153 AKQEELERLRREKVDLENTLE------------QEQEALVNRLWKQMDKLEAEKRRLQEKL------EQPVSAPPS----  210 (310)
T ss_pred             HhHHHHHHHHHHHHhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------ccccCCCCC----
Confidence            344445566665555544443            3556899999999999999988755431      110000000    


Q ss_pred             hHhhhHHH---hhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHHHHHHHHHHHHHHHHHHhhhH
Q 004019          497 KVKECETL---LASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLD  571 (779)
Q Consensus       497 ~~~e~~~l---~~~~~~~~~eik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~~~~~E~k~~~e~~~Lk~~L~  571 (779)
                       ..++...   .+-...-...|+.|+.+|..++..       |.....  ...-....+..-|+.++.++.+|+..|.
T Consensus       211 -~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~q-------L~~sq~--e~~~k~~~~~~eek~ireEN~rLqr~L~  278 (310)
T PF09755_consen  211 -PRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQ-------LAASQQ--EHSEKMAQYLQEEKEIREENRRLQRKLQ  278 (310)
T ss_pred             -cchHHhhcccCCchhHHHHHHHHHHHHHHHHHHH-------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0011000   001112234566666665554441       111111  1223344466678889999999999875

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.16  E-value=1.3  Score=42.61  Aligned_cols=28  Identities=21%  Similarity=0.308  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          715 CLDQAQRLAEDRSQNSANLENTQKRLSD  742 (779)
Q Consensus       715 l~~~~~~leeel~~~~~~le~~r~~~~e  742 (779)
                      +...+..+++++-.....+.....++.+
T Consensus        78 l~rriq~LEeele~ae~~L~e~~ekl~e  105 (143)
T PF12718_consen   78 LNRRIQLLEEELEEAEKKLKETTEKLRE  105 (143)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444433333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.98  E-value=5  Score=47.61  Aligned_cols=139  Identities=14%  Similarity=0.175  Sum_probs=80.4

Q ss_pred             HHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004019          605 QKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDK  684 (779)
Q Consensus       605 ~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek  684 (779)
                      ..+...+..+..+...+..+++...-|..|++.+....     -+..+++-+-+.-.-..|...|=-|.-..-+.+..++
T Consensus       447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~-----~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkei  521 (594)
T PF05667_consen  447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV-----NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEI  521 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455556667777777777778877776542     2333333333333333333334344445555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHH
Q 004019          685 HMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENT---QKRLSDVRKSSV  748 (779)
Q Consensus       685 ~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~---r~~~~e~e~~l~  748 (779)
                      ..+...+...=..++...-.-.+.++..+.++..+..+-+.+..+-..++.+   .+++.+++.+|.
T Consensus       522 N~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~  588 (594)
T PF05667_consen  522 NSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQID  588 (594)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            6666666665555555555555566778888888888887777766655544   445555555444

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=95.93  E-value=5.7  Score=47.86  Aligned_cols=127  Identities=12%  Similarity=0.133  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 004019          594 AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRA  673 (779)
Q Consensus       594 ~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~  673 (779)
                      ..+..+|=.|+.-|.....++..|...|++-++-++.-++                           ....|...|++-.
T Consensus       586 e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALa---------------------------nLKsKYE~EK~~v  638 (717)
T PF09730_consen  586 EELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALA---------------------------NLKSKYENEKAMV  638 (717)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHhhhhhhH
Confidence            3445566667777766666666666666655554442221                           1111222233334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004019          674 RQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSS  747 (779)
Q Consensus       674 ~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l  747 (779)
                      .-+...|+.+...+.....++..--.-+..+....--++..++.++...++|...+.+-+...=.+--.+.+.+
T Consensus       639 ~etm~kLRnELK~LKEDAATFsSlRamFa~RCdEYvtQldemqrqL~aAEdEKKTLNsLLRmAIQQKLaLTQRL  712 (717)
T PF09730_consen  639 SETMMKLRNELKALKEDAATFSSLRAMFAARCDEYVTQLDEMQRQLAAAEDEKKTLNSLLRMAIQQKLALTQRL  712 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445777788888888888888888888888888888888999999999888887776655433333333333

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=95.91  E-value=6.8  Score=48.56  Aligned_cols=146  Identities=14%  Similarity=0.244  Sum_probs=84.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 004019          302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALF-EKL  380 (779)
Q Consensus       302 ~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~-e~L  380 (779)
                      +.+.++.+.++++-...+..|++.+++....+..+...++.+..+.     ...+..++..+..++.++..+...+ ..+
T Consensus       318 ~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~-----~n~i~~~k~~~d~l~k~I~~~~~~~~~~~  392 (1074)
T KOG0250|consen  318 LTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREI-----ENSIRKLKKEVDRLEKQIADLEKQTNNEL  392 (1074)
T ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4556777788888888889999999999999999998888876643     0122233333333333333333333 333


Q ss_pred             HHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccH
Q 004019          381 QVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFP  460 (779)
Q Consensus       381 q~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~  460 (779)
                      +.++......+ ++                +..++..++..+.+|+.+++++.-++..-..+.+      .++..+.++.
T Consensus       393 ~~~~~e~e~k~-~~----------------L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~------~i~~~i~~l~  449 (1074)
T KOG0250|consen  393 GSELEERENKL-EQ----------------LKKEVEKLEEQINSLREELNEVKEKAKEEEEEKE------HIEGEILQLR  449 (1074)
T ss_pred             hhhHHHHHHHH-HH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHH
Confidence            33333332222 11                2456677777777888887777776644322222      2334444455


Q ss_pred             HHHHHHHHHHHHhHH
Q 004019          461 EDMSAMQRQLSKYKE  475 (779)
Q Consensus       461 ~~i~~L~~e~~r~k~  475 (779)
                      ..|.....+++.++.
T Consensus       450 k~i~~~~~~l~~lk~  464 (1074)
T KOG0250|consen  450 KKIENISEELKDLKK  464 (1074)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            555555555555543

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.71  E-value=6.4  Score=46.73  Aligned_cols=84  Identities=17%  Similarity=0.241  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          578 RVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT  657 (779)
Q Consensus       578 ~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~  657 (779)
                      ++-..+.-.+..+..+.++...+..|-.+|.+.+-++...+..+.......+..++||+.+.+-.-++|+.+.+++..-.
T Consensus       431 ~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq  510 (1118)
T KOG1029|consen  431 WIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQ  510 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            45556666666777777888888888888888888888888888888999999999999988777777777777765555


Q ss_pred             Hhhh
Q 004019          658 ERDD  661 (779)
Q Consensus       658 e~dd  661 (779)
                      ++.+
T Consensus       511 ~l~~  514 (1118)
T KOG1029|consen  511 ELNH  514 (1118)
T ss_pred             HHHH
Confidence            5544

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=95.65  E-value=3.8  Score=43.77  Aligned_cols=54  Identities=15%  Similarity=0.332  Sum_probs=33.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHH
Q 004019          416 ADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHI  482 (779)
Q Consensus       416 ~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~  482 (779)
                      ..+.+.+..++..||+|..++             .||+..+.++..+-..+-.+|..||+-..+++.
T Consensus        30 ~El~~~~~~~~ekRdeln~kv-------------rE~~e~~~elr~~rdeineev~elK~kR~ein~   83 (294)
T COG1340          30 DELRKEASELAEKRDELNAKV-------------RELREKAQELREERDEINEEVQELKEKRDEINA   83 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555666666677666555             456666666666666777777777665544444

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=95.61  E-value=7.5  Score=46.86  Aligned_cols=98  Identities=16%  Similarity=0.160  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 004019          675 QLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSL  754 (779)
Q Consensus       675 q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~l  754 (779)
                      ..|.....++..+..++..+.........   ...+....+......+...+..+.+....-+..+.+++.++..+....
T Consensus       359 ~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~---~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A  435 (717)
T PF09730_consen  359 CKYKVAVSEVIQLKAELKALKSKYNELEE---RYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLA  435 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555554444444   222233344445555555555555555555556666777777666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 004019          755 EESQSKVYKSRLTLMELQIEL  775 (779)
Q Consensus       755 e~~e~~l~e~~~~l~E~~~~l  775 (779)
                      ...+..|...++.+....-.|
T Consensus       436 ~E~q~~LnsAQDELvtfSEeL  456 (717)
T PF09730_consen  436 GESQGSLNSAQDELVTFSEEL  456 (717)
T ss_pred             HhHHHHHHHHHHHHHHHHHHH
Confidence            666666666666665554433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK09039 hypothetical protein; Validated

Probab=95.50  E-value=3.9  Score=45.29  Aligned_cols=67  Identities=15%  Similarity=0.188  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 004019          554 DLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALK  622 (779)
Q Consensus       554 ~~E~k~~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~  622 (779)
                      -...=+..++......|+.++.+  |..+.+...--..+...++..+..|+.++..++.....++..++
T Consensus        39 ~~q~fLs~~i~~~~~eL~~L~~q--Ia~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~  105 (343)
T PRK09039         39 VAQFFLSREISGKDSALDRLNSQ--IAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA  105 (343)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35555888888888888887774  66677777777777778888888888888776665555444443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.46  E-value=2.6  Score=40.60  Aligned_cols=64  Identities=13%  Similarity=0.169  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 004019          700 FFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYK  763 (779)
Q Consensus       700 ~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e  763 (779)
                      .+..+|.-+++.+......+....+.++......+.+.+++..++......-.+++....++..
T Consensus        77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~  140 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE  140 (143)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555555555555555555555555555555555555555544444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK09039 hypothetical protein; Validated

Probab=95.36  E-value=2.7  Score=46.62  Aligned_cols=56  Identities=11%  Similarity=0.229  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          602 DMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT  657 (779)
Q Consensus       602 ~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~  657 (779)
                      .+...|+....++..+.+.|.--......|..+|..+...|+.....+.++..+..
T Consensus        50 ~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~  105 (343)
T PRK09039         50 GKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA  105 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333333333333344445545556666666666666666666565555554433

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=95.01  E-value=6.1  Score=42.29  Aligned_cols=81  Identities=9%  Similarity=0.213  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHH
Q 004019          682 MDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKV  761 (779)
Q Consensus       682 ~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l  761 (779)
                      .++..+......++..|..+.+.+.....++..+...+..+.++....-..+.....++.++...+..++..+-.++..+
T Consensus       165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~i  244 (294)
T COG1340         165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKI  244 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444444333333333333333333333333333333333333


Q ss_pred             H
Q 004019          762 Y  762 (779)
Q Consensus       762 ~  762 (779)
                      .
T Consensus       245 k  245 (294)
T COG1340         245 K  245 (294)
T ss_pred             H
Confidence            3

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.98  E-value=9.2  Score=44.23  Aligned_cols=129  Identities=12%  Similarity=0.149  Sum_probs=72.7

Q ss_pred             ChhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHH
Q 004019          353 SKAFLSVKNQLEK-SKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNR  431 (779)
Q Consensus       353 S~~yk~L~~q~~~-l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~  431 (779)
                      .+.|..+.+++.+ +++.+.-.-..++.|+.....+-.++.+.+    .          ...++..++...++++++...
T Consensus       212 ~d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~e----k----------~~~~~eslre~~~~L~~D~nK  277 (581)
T KOG0995|consen  212 EDNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINERE----K----------DPGKEESLREKKARLQDDVNK  277 (581)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c----------CcchHHHHHHHHHHHHhHHHH
Confidence            3344444444444 444454455566666777766666653331    0          156788888888888888888


Q ss_pred             HHHHHHHHhcCCCc-hhHHHHHHHHHhccHHHHHHHHHHHHHhHH-------HhHHHHHHHHhHHhHHHHHH
Q 004019          432 IEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKE-------AALDIHILRADVLSLTNVLE  495 (779)
Q Consensus       432 L~~e~e~~~~~~~~-~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~-------~~~e~~~l~~e~~~l~~~~~  495 (779)
                      .++=+.+....... ...+..++.=+..-..++..++.++..+|.       ..+++..++.|...+...+.
T Consensus       278 ~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~  349 (581)
T KOG0995|consen  278 FQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELN  349 (581)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            88877775555543 244444444444455555555555555442       22445555555444444443

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=94.45  E-value=9.2  Score=41.75  Aligned_cols=103  Identities=15%  Similarity=0.264  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004019          592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGV  671 (779)
Q Consensus       592 kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~  671 (779)
                      ++.....+=..|+.+|...-....+....|..+..-...+..|||.++...-.+...|..+..--..-+.....++.|+.
T Consensus       203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~  282 (309)
T PF09728_consen  203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ  282 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            45555556667777777776677777777777788888888888888888777777777777666666666666666665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 004019          672 RARQLQDALLMDKHMMESEIQQA  694 (779)
Q Consensus       672 k~~q~~~~l~~ek~~le~el~~~  694 (779)
                      .....+..+...+..|+.=+.++
T Consensus       283 ~~~~~~~~~~~k~~kLe~LcRaL  305 (309)
T PF09728_consen  283 KLEKELEKLKKKIEKLEKLCRAL  305 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555554444433

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.34  E-value=6.3  Score=39.45  Aligned_cols=132  Identities=15%  Similarity=0.137  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          625 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMK  704 (779)
Q Consensus       625 ~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~  704 (779)
                      -+.+.++-.|++.+..-.-.+.++|.++.-+-...+.-++.|..+=-       +|.++...+..+..-++.....+...
T Consensus        59 l~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~-------~Lqeen~kl~~e~~~lk~~~~eL~~~  131 (193)
T PF14662_consen   59 LQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIE-------TLQEENGKLLAERDGLKKRSKELATE  131 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHhhhhHHHHHHHHHHh
Confidence            34667778888888888888888888888777666665555554222       23333333333333222222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 004019          705 AARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYK  763 (779)
Q Consensus       705 i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e  763 (779)
                      ...+--++=.+..=+......+.......+.+..-+.+...-..+||..+.+.+.++-+
T Consensus       132 ~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q  190 (193)
T PF14662_consen  132 KATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ  190 (193)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22222222222222222333344455555556666666666666666666666666543

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=94.32  E-value=16  Score=44.12  Aligned_cols=31  Identities=13%  Similarity=0.188  Sum_probs=21.9

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004019          414 KIADLGIEIQKQIDEKNRIEMRLEEASREPG  444 (779)
Q Consensus       414 ~~~~lE~~l~rir~erd~L~~e~e~~~~~~~  444 (779)
                      +...++..+..++.+++.....+........
T Consensus       263 ~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~  293 (650)
T TIGR03185       263 EREQLERQLKEIEAARKANRAQLRELAADPL  293 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            4467788888888888887777776554444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.23  E-value=7.3  Score=39.77  Aligned_cols=102  Identities=21%  Similarity=0.343  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHH
Q 004019          592 RLAAAEAEIADMRQKLEAFKRDMVSLS---DALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT-ERDDYNIKLV  667 (779)
Q Consensus       592 kl~~~e~ei~~L~~~l~~~~r~~~~l~---~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~-e~dd~~~kl~  667 (779)
                      -|..++.++..|+..|....++...|.   ..+...+.+...|.-|-+++.+-|+.+...+-.|..... -..++.++..
T Consensus        63 pL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~  142 (201)
T PF13851_consen   63 PLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTG  142 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788889999999988877777544   477777888888888888888888888777777663332 2334444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          668 LEGVRARQLQDALLMDKHMMESEIQQ  693 (779)
Q Consensus       668 ~E~~k~~q~~~~l~~ek~~le~el~~  693 (779)
                      +-.+-..+.+..+....+.-+.++..
T Consensus       143 ~kn~lLEkKl~~l~~~lE~keaqL~e  168 (201)
T PF13851_consen  143 LKNLLLEKKLQALSEQLEKKEAQLNE  168 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43333444444444444444444444

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.06  E-value=18  Score=43.56  Aligned_cols=56  Identities=16%  Similarity=0.310  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          598 AEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLL  653 (779)
Q Consensus       598 ~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~  653 (779)
                      .++-++-..+.....+..++..++..-++...++.-++..+....+.|-.++.-+.
T Consensus       792 eqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la  847 (970)
T KOG0946|consen  792 EQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLA  847 (970)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchh
Confidence            34444444455555555555555555555555665555555555555555444443

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=93.77  E-value=5  Score=36.25  Aligned_cols=99  Identities=16%  Similarity=0.191  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHH
Q 004019          673 ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSV-QVR  751 (779)
Q Consensus       673 ~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~-elr  751 (779)
                      .......+......++..+...+...+.+...-..+...+..|..+.......+..+...+...++.+.. ++..+ ++.
T Consensus         7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~-eK~ak~~l~   85 (107)
T PF09304_consen    7 LEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED-EKQAKLELE   85 (107)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            4444556666777777777777777777777777777777777777777777777777777777777666 44444 777


Q ss_pred             HhHHHHHHHHHHHHHHHHHHH
Q 004019          752 GSLEESQSKVYKSRLTLMELQ  772 (779)
Q Consensus       752 ~~le~~e~~l~e~~~~l~E~~  772 (779)
                      .++..++.-..-.+.+++|.+
T Consensus        86 ~r~~k~~~dka~lel~l~e~~  106 (107)
T PF09304_consen   86 SRLLKAQKDKAILELKLAEAK  106 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHhhc
Confidence            788888877777777777754

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=93.66  E-value=15  Score=41.37  Aligned_cols=77  Identities=13%  Similarity=0.123  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 004019          677 QDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGS  753 (779)
Q Consensus       677 ~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~  753 (779)
                      +..+......++.+-..+...+..+.....++.-.+.+-......++.++....+.++.++.+...+...+..+..+
T Consensus       170 ~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~  246 (420)
T COG4942         170 LKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAA  246 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            33444444444555455555555555555555555555555555566666666666666666666666666555533

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.59  E-value=5.8  Score=42.76  Aligned_cols=49  Identities=20%  Similarity=0.230  Sum_probs=24.3

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004019          620 ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL  668 (779)
Q Consensus       620 ~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~  668 (779)
                      +|.........|..|+..-...+...|++-.+|+.++.++...-..++.
T Consensus       207 QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~  255 (306)
T PF04849_consen  207 QLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAA  255 (306)
T ss_pred             HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4455555555555555555555555555555555444444433333333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.39  E-value=23  Score=42.66  Aligned_cols=92  Identities=11%  Similarity=0.161  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 004019          679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQ  758 (779)
Q Consensus       679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e  758 (779)
                      .+..+...++.++..++..+....+.+..+.+++..+..++..-.--.......-++...++..+.++-+++..-+...+
T Consensus       845 ~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~  924 (970)
T KOG0946|consen  845 NLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSETLSKALKTVKSENLSLKIVSNKQEQEELLVLLADQK  924 (970)
T ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhcccchhcccchhhhHHHHHHHHhhHH
Confidence            44556666666666666666666666777767666665444332111111222223444444444444444444444444


Q ss_pred             HHHHHHHHHHHH
Q 004019          759 SKVYKSRLTLME  770 (779)
Q Consensus       759 ~~l~e~~~~l~E  770 (779)
                      ..+..++..+..
T Consensus       925 ~~i~alk~~l~d  936 (970)
T KOG0946|consen  925 EKIQALKEALED  936 (970)
T ss_pred             HHHHHHHHHHHH
Confidence            444444444433

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=93.30  E-value=25  Score=42.78  Aligned_cols=120  Identities=13%  Similarity=0.119  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004019          592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGV  671 (779)
Q Consensus       592 kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~  671 (779)
                      +|+.-.++...-|.+++.+...+++.....-..+...+.+..=+..+          .....-.+++.++...++..   
T Consensus       390 qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l----------~~~h~~lL~K~~di~kQle~---  456 (980)
T KOG0980|consen  390 QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTEL----------RQEHADLLRKYDDIQKQLES---  456 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH---
Confidence            56655555555666665555444444443333333333332222222          22222233444555555555   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          672 RARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAED  725 (779)
Q Consensus       672 k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leee  725 (779)
                       ..+.+....+++..+...+..+......+..+.+...+.+..+..++..+..+
T Consensus       457 -~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e  509 (980)
T KOG0980|consen  457 -AEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIE  509 (980)
T ss_pred             -HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence             44444455555555555555554444444444444444444444443333333

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.19  E-value=24  Score=42.24  Aligned_cols=147  Identities=16%  Similarity=0.158  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 004019          600 IADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDA  679 (779)
Q Consensus       600 i~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~  679 (779)
                      ...|+..|....-....|...|--..-....-..||+.+..--+-|-....+|.+.+.+....+.+|.-|+...+..+..
T Consensus       439 ~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq  518 (1118)
T KOG1029|consen  439 KKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQ  518 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            33444444444333333333333333233333445555555555555566666666666666666666655554443331


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 004019          680 LLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGS  753 (779)
Q Consensus       680 l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~  753 (779)
                      ....-..       -......+.....+-+...+.+..++..+++|....-+.++.+...+.++......++..
T Consensus       519 ~q~a~~~-------~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~la  585 (1118)
T KOG1029|consen  519 KQSAHKE-------TTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLA  585 (1118)
T ss_pred             hhhhccC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            1111100       011122223333333333444444444455554444444444444444444444443333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=93.12  E-value=24  Score=42.06  Aligned_cols=40  Identities=10%  Similarity=0.052  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          689 SEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ  728 (779)
Q Consensus       689 ~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~  728 (779)
                      ..|-.+...|.+|+..|.++-..-+.++.++..+...+.+
T Consensus       491 ~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~R  530 (594)
T PF05667_consen  491 RRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDR  530 (594)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444566666666666666666666666666666555544

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.87  E-value=25  Score=41.70  Aligned_cols=49  Identities=14%  Similarity=0.264  Sum_probs=25.3

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHHHHHHHHHHHHHHHHHHhhhH
Q 004019          516 HKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLD  571 (779)
Q Consensus       516 k~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~~~~~E~k~~~e~~~Lk~~L~  571 (779)
                      +..+.+|.-+.+-+..+.-+.+.... +.+.++.+.+      +..|++.|..+|.
T Consensus       244 ~~~~dqlqel~~l~~a~~q~~ee~~~-~re~~~tv~~------LqeE~e~Lqskl~  292 (716)
T KOG4593|consen  244 KNMKDQLQELEELERALSQLREELAT-LRENRETVGL------LQEELEGLQSKLG  292 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHH------HHHHHHHHHHHHH
Confidence            44445555555555555445554443 4456666665      4444555555553

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=92.44  E-value=15  Score=38.07  Aligned_cols=116  Identities=16%  Similarity=0.145  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          625 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMK  704 (779)
Q Consensus       625 ~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~  704 (779)
                      ..+..-|.-|.+++..-+++   |..++.+++.-+++-+.....    ..   ..++.-+..|+..-..+.+.--+...-
T Consensus        65 ~t~nqrl~~E~e~~Kek~e~---q~~q~y~q~s~Leddlsqt~a----ik---eql~kyiReLEQaNDdLErakRati~s  134 (333)
T KOG1853|consen   65 ETRNQRLTTEQERNKEKQED---QRVQFYQQESQLEDDLSQTHA----IK---EQLRKYIRELEQANDDLERAKRATIYS  134 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHhccHHHHhhhhhhhh
Confidence            66777788888888666665   888899899888886666655    22   233344444444444444444455667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 004019          705 AARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSL  754 (779)
Q Consensus       705 i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~l  754 (779)
                      +..++-.+...+...+.++.|+-..+..++.+.+-    ..+..+|+..+
T Consensus       135 leDfeqrLnqAIErnAfLESELdEke~llesvqRL----kdEardlrqel  180 (333)
T KOG1853|consen  135 LEDFEQRLNQAIERNAFLESELDEKEVLLESVQRL----KDEARDLRQEL  180 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            78888889999999999999988877777766543    34444454444

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=92.37  E-value=21  Score=41.64  Aligned_cols=31  Identities=19%  Similarity=0.332  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004019          241 KAKLNRLKGELESAVKELEECNCKLAALRAE  271 (779)
Q Consensus       241 ~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e  271 (779)
                      ..-..-|..++..+..++..++.++...+.+
T Consensus       160 ~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~  190 (498)
T TIGR03007       160 DSAQRFIDEQIKTYEKKLEAAENRLKAFKQE  190 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456677888888888888888888777644

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=92.37  E-value=11  Score=36.20  Aligned_cols=88  Identities=11%  Similarity=0.140  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 004019          673 ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ-------NSANLENTQKRLSDVRK  745 (779)
Q Consensus       673 ~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~-------~~~~le~~r~~~~e~e~  745 (779)
                      ....+.++.++.+........+..+.+..+..+..+...+..+...+..+..++..       +.+.+..++.++.+++.
T Consensus        22 le~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~  101 (140)
T PF10473_consen   22 LEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES  101 (140)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666777778877777777777777777777777777777766666666666555       44445555555555555


Q ss_pred             hHHHHHHhHHHHHHH
Q 004019          746 SSVQVRGSLEESQSK  760 (779)
Q Consensus       746 ~l~elr~~le~~e~~  760 (779)
                      ...++...+...++.
T Consensus       102 ~~~~~~~~l~~~E~e  116 (140)
T PF10473_consen  102 LNSSLENLLQEKEQE  116 (140)
T ss_pred             HhHHHHHHHHHHHHH
Confidence            555555555544444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=92.36  E-value=14  Score=37.51  Aligned_cols=68  Identities=10%  Similarity=0.140  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 004019          694 ANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKS  764 (779)
Q Consensus       694 ~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~  764 (779)
                      +...++.....+...+..+..|..++.-....   +...+-..+++..++...+..+...+..+.+++++.
T Consensus       123 L~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~---~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEK  190 (194)
T PF15619_consen  123 LQRKLSQLEQKLQEKEKKIQELEKQLELENKS---FRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEK  190 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444333322   344445555555556666666665555555555543

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=92.02  E-value=31  Score=42.52  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004019          239 KDKAKLNRLKGELESAVKELEECNCKLAALRAER  272 (779)
Q Consensus       239 ~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~  272 (779)
                      ....-..-|.+++.++..++..++.++...+.+.
T Consensus       191 ~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~  224 (754)
T TIGR01005       191 SNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQS  224 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3456677889999999999999999998888653

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=91.92  E-value=12  Score=35.57  Aligned_cols=36  Identities=28%  Similarity=0.368  Sum_probs=31.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          623 SKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITE  658 (779)
Q Consensus       623 ~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e  658 (779)
                      +-..+-..|..||..+..-++++..||.=|+.|+..
T Consensus        95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen   95 SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345678889999999999999999999999998864

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=91.70  E-value=21  Score=38.91  Aligned_cols=150  Identities=14%  Similarity=0.161  Sum_probs=80.8

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 004019          620 ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRAR--QLQDALLMDKHMMESEIQQANAS  697 (779)
Q Consensus       620 ~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~--q~~~~l~~ek~~le~el~~~~~~  697 (779)
                      -|.........|..|++.+.+-+.+++..+.-|-.+++....-...+..    ..  .....+-...+.+..++.+++.+
T Consensus        73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~----~~~~~ere~lV~qLEk~~~q~~qLe~d  148 (319)
T PF09789_consen   73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGA----RHFPHEREDLVEQLEKLREQIEQLERD  148 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccc----cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666777777777777777777777766666655554332221111    11  12223344444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004019          698 LNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRK---SSVQVRGSLEESQSKVYKSRLTLMELQIE  774 (779)
Q Consensus       698 ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~---~l~elr~~le~~e~~l~e~~~~l~E~~~~  774 (779)
                      +.....+..++...-..+.....++..|+..   .+-.....++++..   +.+=|+.++..++....-++..++-++.-
T Consensus       149 ~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~---~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~  225 (319)
T PF09789_consen  149 LQSLLDEKEELVTERDAYKCKAHRLNHELNY---ILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSA  225 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444445555444432   22333334444443   44556677777777777777777777777


Q ss_pred             Hh
Q 004019          775 LV  776 (779)
Q Consensus       775 le  776 (779)
                      ++
T Consensus       226 le  227 (319)
T PF09789_consen  226 LE  227 (319)
T ss_pred             HH
Confidence            66

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=91.64  E-value=35  Score=40.57  Aligned_cols=59  Identities=22%  Similarity=0.173  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          210 KNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL  268 (779)
Q Consensus       210 ~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~l  268 (779)
                      ..|...-..+...+..+..++.+.++...-....+-+|..+++...+++...+.+++..
T Consensus       108 ~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss  166 (716)
T KOG4593|consen  108 TRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSS  166 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445556666677777777777777777888888888888888888888887543

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=91.41  E-value=41  Score=40.97  Aligned_cols=54  Identities=20%  Similarity=0.165  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          686 MMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKR  739 (779)
Q Consensus       686 ~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~  739 (779)
                      .++.+...+.-.++........++.+.......+..++.|+..+...++...+.
T Consensus       463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~  516 (980)
T KOG0980|consen  463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT  516 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333344444444444444444444444444433

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=91.16  E-value=18  Score=36.32  Aligned_cols=36  Identities=22%  Similarity=0.295  Sum_probs=15.2

Q ss_pred             HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004019          738 KRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQI  773 (779)
Q Consensus       738 ~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~  773 (779)
                      +.+.-++..+.++...+......+..++..+.++-.
T Consensus       165 RsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~  200 (205)
T KOG1003|consen  165 RRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQ  200 (205)
T ss_pred             HHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444433

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=91.05  E-value=13  Score=41.66  Aligned_cols=86  Identities=16%  Similarity=0.215  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004019          673 ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQA----QRLAEDRSQNSANLENTQKRLSDVRKSSV  748 (779)
Q Consensus       673 ~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~----~~leeel~~~~~~le~~r~~~~e~e~~l~  748 (779)
                      ..+....+..++..++..+++++..++....+.....+.-+.|.++.    +.+++...........+..++.+++.+++
T Consensus       366 l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlr  445 (493)
T KOG0804|consen  366 LKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLR  445 (493)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555556666677777777777777777766666666555544443    44455555556666677777888888888


Q ss_pred             HHHHhHHHHH
Q 004019          749 QVRGSLEESQ  758 (779)
Q Consensus       749 elr~~le~~e  758 (779)
                      ++..-++.-+
T Consensus       446 Dlmf~le~qq  455 (493)
T KOG0804|consen  446 DLMFFLEAQQ  455 (493)
T ss_pred             hHheehhhhh
Confidence            8888776544

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=90.75  E-value=44  Score=41.20  Aligned_cols=34  Identities=0%  Similarity=-0.148  Sum_probs=25.2

Q ss_pred             HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004019          742 DVRKSSVQVRGSLEESQSKVYKSRLTLMELQIEL  775 (779)
Q Consensus       742 e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~l  775 (779)
                      ..+.++..|++..+..++.+..+-.++.+..+..
T Consensus       373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~  406 (754)
T TIGR01005       373 EQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ  406 (754)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3467777888888888888888887777776653

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=90.30  E-value=33  Score=37.85  Aligned_cols=255  Identities=15%  Similarity=0.131  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cccchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCccccc
Q 004019           43 LQFQNQKLVQKLETQKVEYSALENKFAQLKER--------QQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRC  114 (779)
Q Consensus        43 l~fQn~aL~rql~~~kre~~~Le~ri~~Le~r--------q~~~d~~L~~v~~~W~QL~~~i~~l~~~~~~~~~~~~~~~  114 (779)
                      |.--=++|--||+..+-+-.+++.-+..++..        +++|+..|..+...-.+.++|+.-.-.|            
T Consensus       296 L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqR------------  363 (593)
T KOG4807|consen  296 LEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQR------------  363 (593)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------------
Confidence            33444578888888888887777777666554        6688889999999999999888633221            


Q ss_pred             cccccCCCCCCCchHHHHHHhhccCCCCCCCCCCcchHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHhhh-c-
Q 004019          115 LSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKD-L-  192 (779)
Q Consensus       115 ~~~~~~~~~~~~~~~fl~~ll~~~~~~~s~~~~~~~~~e~~L~~r~~~tk~~l~~l~~~~~~~~~~~~~l~~~l~~~-~-  192 (779)
                                     -|.+|              -++-+--|.+-..+|.++|..+..+...      ++...|... + 
T Consensus       364 ---------------ELekL--------------reEKdrLLAEETAATiSAIEAMKnAhrE------EmeRELeKsqSv  408 (593)
T KOG4807|consen  364 ---------------ELEKL--------------REEKDRLLAEETAATISAIEAMKNAHRE------EMERELEKSQSV  408 (593)
T ss_pred             ---------------HHHHH--------------HHHHHhhhhhhhhhhhHHHHHHHHHHHH------HHHHHHHhhhcc
Confidence                           12233              2333333444444455555544444332      233333222 1 


Q ss_pred             cCCchhhhhhhchHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 004019          193 QDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL----AAL  268 (779)
Q Consensus       193 ~~~~~~~~~~~~l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl----~~l  268 (779)
                      ..|+..  .......++..++..+.-|......--.+..++-..+..-+.-+.++..+--++-.--.....||    ++|
T Consensus       409 nsdvea--LRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrL  486 (593)
T KOG4807|consen  409 NSDVEA--LRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRL  486 (593)
T ss_pred             ccChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence            111111  11123445556666666555544444344444433333333333333333222222222222233    222


Q ss_pred             HhccccccCCccccCcCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 004019          269 RAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVK  348 (779)
Q Consensus       269 k~e~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~  348 (779)
                      +.   ...|     .++     ++|.|...++..-+|+       -|......||+=|.+++..|..+++.+   ++|-.
T Consensus       487 Rt---lltg-----dGg-----GtGsplaqgkdayELE-------VLLRVKEsEiQYLKqEissLkDELQta---lrDKk  543 (593)
T KOG4807|consen  487 RT---LLTG-----DGG-----GTGSPLAQGKDAYELE-------VLLRVKESEIQYLKQEISSLKDELQTA---LRDKK  543 (593)
T ss_pred             HH---Hhcc-----CCC-----CCCCccccCcchhhHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHH---Hhhhh
Confidence            21   1111     101     1233444444444443       344445566777766666666655443   33434


Q ss_pred             ccccChhHHHHHHHHHHHHHHHH
Q 004019          349 CLSSSKAFLSVKNQLEKSKSEVF  371 (779)
Q Consensus       349 ~i~~S~~yk~L~~q~~~l~~~~~  371 (779)
                      |.  |+-|+.++..+++.++..+
T Consensus       544 ya--SdKYkDiYtELSiaKakad  564 (593)
T KOG4807|consen  544 YA--SDKYKDIYTELSIAKAKAD  564 (593)
T ss_pred             cc--ccchhHHHHHHHHHHHhhh
Confidence            43  5899999999999887655

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=90.10  E-value=32  Score=37.52  Aligned_cols=136  Identities=17%  Similarity=0.186  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 004019          590 QQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLE  669 (779)
Q Consensus       590 ~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E  669 (779)
                      .+++..++.+|.-||.++...+-........  .--.+-+.|+..+|.       ++.++.++...+.-.-|-..+++.|
T Consensus        92 rqkl~E~qGD~KlLR~~la~~r~~~~~~~~~--~~~~ere~lV~qLEk-------~~~q~~qLe~d~qs~lDEkeEl~~E  162 (319)
T PF09789_consen   92 RQKLNEAQGDIKLLREKLARQRVGDEGIGAR--HFPHEREDLVEQLEK-------LREQIEQLERDLQSLLDEKEELVTE  162 (319)
T ss_pred             HHHHHHHhchHHHHHHHHHhhhhhhcccccc--ccchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555555555554432211111111  111455555555544       4455555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          670 GVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLE  734 (779)
Q Consensus       670 ~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le  734 (779)
                      |=--......|..++..+=..-..--.+|+.+..+-+-+.+.+..++.+...+..-+...-..++
T Consensus       163 RD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le  227 (319)
T PF09789_consen  163 RDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE  227 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44333333333333322222111111246666666666666666666666666655555555555

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=90.00  E-value=48  Score=39.36  Aligned_cols=123  Identities=16%  Similarity=0.173  Sum_probs=58.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccCc-cccccChhHHHHHHH-------HHHHHHHHH
Q 004019          301 DLRDMESVHKELMDQASHQLLELK-GLHDGRIKVLQQLYNLQNTLKSV-KCLSSSKAFLSVKNQ-------LEKSKSEVF  371 (779)
Q Consensus       301 ~~~~l~~~~eE~~~la~~Rl~ELe-~l~~e~~~l~~e~~~Lk~~l~~~-~~i~~S~~yk~L~~q-------~~~l~~~~~  371 (779)
                      .++.|-.+.++++-.|.+--.++. ++.+..    .++.+|+.+..-. ...-  .....|..+       +.++.-.+.
T Consensus       191 niekMi~aFEeLR~qAEn~r~EM~fKlKE~~----~k~~~leeey~~E~n~kE--kqvs~L~~q~~eKen~~kdl~~~l~  264 (786)
T PF05483_consen  191 NIEKMIAAFEELRVQAENDRQEMHFKLKEDY----EKFEDLEEEYKKEVNDKE--KQVSLLQTQLKEKENKIKDLLLLLQ  264 (786)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhHH--HHHHHHHHHHHhhHhHHHHHHHHHH
Confidence            467788888888888887777665 444433    3344444443311 0000  122233332       223344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004019          372 KYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEA  439 (779)
Q Consensus       372 ~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~  439 (779)
                      ..+..+..|+....-.-..+.+..   +-.++       +.+.+.....-+++..+.-.-|..++..+
T Consensus       265 es~~~~~qLeE~~~~q~E~Lkes~---~~qe~-------L~~eL~~~K~slq~~~~tq~~le~~lq~~  322 (786)
T PF05483_consen  265 ESQDKCNQLEEKTKEQHENLKESN---EEQEH-------LLQELEDIKQSLQESESTQKALEEDLQQA  322 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhH---HhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444433222222222   11111       13444555566666666666666666554

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=89.82  E-value=37  Score=37.79  Aligned_cols=62  Identities=24%  Similarity=0.237  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCcChHHHHH----------HHHHHH-HHHHHHHHHHhhhHHhc
Q 004019          513 AEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLA----------ARDLEY-KAWAHVHSLKSSLDEQS  574 (779)
Q Consensus       513 ~eik~Lr~q~~~l~e~~~elk~~ld~~~~~~~d~rd~~~----------~~~~E~-k~~~e~~~Lk~~L~e~~  574 (779)
                      ..+..|=..+.+|.....-|+..+|.--..+.-+|||..          .+.... ++++||++|++.|....
T Consensus       201 alvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aq  273 (552)
T KOG2129|consen  201 ALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQ  273 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555544444444444555556777888872          333333 45888888888876533

>PLN02939 transferase, transferring glycosyl groups

Probab=89.24  E-value=60  Score=40.76  Aligned_cols=168  Identities=17%  Similarity=0.168  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCc-cccccCh----hHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 004019          320 LLELKGLHDGRIKVLQQLYNLQNTLKSV-KCLSSSK----AFLSVKNQLEKSKSEVFK-----------YQALFEKLQVE  383 (779)
Q Consensus       320 l~ELe~l~~e~~~l~~e~~~Lk~~l~~~-~~i~~S~----~yk~L~~q~~~l~~~~~~-----------~r~~~e~Lq~e  383 (779)
                      +.+|++...|...|..++.-|.|+|..- ..+.-+.    .-..+..|+..++.++-.           +-.++..|..|
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (977)
T PLN02939        155 LEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEE  234 (977)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHH
Confidence            4566777788888999999999987742 1111111    122344454444443321           22333444444


Q ss_pred             HHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhH-HHHHHHHHhccHH
Q 004019          384 KDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR-KEI-IAEFRALVSSFPE  461 (779)
Q Consensus       384 r~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~-~~~-~~E~k~l~~sl~~  461 (779)
                      .-.+...+ ++ ++.+..+.     ++.+..+-.+|+.-+=+.+..-+|.++|-.+..+..+ .+. .+-|=..++.|+.
T Consensus       235 ~~~~~~~~-~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (977)
T PLN02939        235 NMLLKDDI-QF-LKAELIEV-----AETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQD  307 (977)
T ss_pred             hHHHHHHH-HH-HHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHH
Confidence            44444443 33 23333332     2235677888888888888888888888776666665 222 1224555666666


Q ss_pred             HHHHHHHHHHHhHHHhHHHHHHHHhHHhHHHHH
Q 004019          462 DMSAMQRQLSKYKEAALDIHILRADVLSLTNVL  494 (779)
Q Consensus       462 ~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~~~~  494 (779)
                      -+..+..++..+-........|+..+..+.+-+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (977)
T PLN02939        308 LLDRATNQVEKAALVLDQNQDLRDKVDKLEASL  340 (977)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            666666666655444444455566555555544

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=89.18  E-value=46  Score=38.02  Aligned_cols=33  Identities=15%  Similarity=0.246  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004019          240 DKAKLNRLKGELESAVKELEECNCKLAALRAER  272 (779)
Q Consensus       240 ~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e~  272 (779)
                      ...-..-|..++..+..++..++.++...+.+.
T Consensus       169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~  201 (444)
T TIGR03017       169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEK  201 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            355677889999999999999999998888663

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=89.05  E-value=35  Score=39.02  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 004019          588 ISQQRLAAAEAEIADMRQKLEAF  610 (779)
Q Consensus       588 ~~~~kl~~~e~ei~~L~~~l~~~  610 (779)
                      ..+.+|...+.++..||.+..-.
T Consensus       163 aL~ekLk~~~een~~lr~k~~ll  185 (596)
T KOG4360|consen  163 ALQEKLKPLEEENTQLRSKAMLL  185 (596)
T ss_pred             HHHhhcCChHHHHHHHHHHHHHH
Confidence            45667888888888887776554

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=88.20  E-value=45  Score=36.67  Aligned_cols=79  Identities=14%  Similarity=0.182  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Q 004019          678 DALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEES  757 (779)
Q Consensus       678 ~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~  757 (779)
                      ..++.++..+..++......+......+..+...+..+..++..+..++..+....+..+.-   -..++..++..++.+
T Consensus       212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~---t~~Ev~~Lk~~~~~L  288 (325)
T PF08317_consen  212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGW---TRSEVKRLKAKVDAL  288 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHH
Confidence            35556666666666666666666666666666666666666666666666666555554443   344555555555555


Q ss_pred             HH
Q 004019          758 QS  759 (779)
Q Consensus       758 e~  759 (779)
                      +.
T Consensus       289 e~  290 (325)
T PF08317_consen  289 EK  290 (325)
T ss_pred             HH
Confidence            44

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=88.17  E-value=30  Score=34.65  Aligned_cols=35  Identities=31%  Similarity=0.409  Sum_probs=15.2

Q ss_pred             HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004019          738 KRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQ  772 (779)
Q Consensus       738 ~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~  772 (779)
                      ..+.+....+..++..+......+..+...+.+.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  185 (191)
T PF04156_consen  151 KELQDSREEVQELRSQLERLQENLQQLEEKIQELQ  185 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=87.95  E-value=33  Score=34.86  Aligned_cols=176  Identities=16%  Similarity=0.209  Sum_probs=87.2

Q ss_pred             HHHHHHHHhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004019          560 WAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIG  639 (779)
Q Consensus       560 ~~e~~~Lk~~L~e~~~e~~vk~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~  639 (779)
                      ..++.-||++|-+...++-.| .++        |-.+.+.+.+++..+.........+...+..+..+.+...+|+....
T Consensus         9 ~GEIsLLKqQLke~q~E~~~K-~~E--------iv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~   79 (202)
T PF06818_consen    9 SGEISLLKQQLKESQAEVNQK-DSE--------IVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKK   79 (202)
T ss_pred             hhhHHHHHHHHHHHHHHHHHH-HhH--------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHh
Confidence            356777777776655542222 222        34445555566666666666666666655555666555555554443


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHH-----------HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          640 QSYDDMQTQNQQLLQQITERDDYNIKL-----------VLEGVRARQ-----LQDALLMDKHMMESEIQQANASLNFFDM  703 (779)
Q Consensus       640 ~A~e~lqeqn~rl~qq~~e~dd~~~kl-----------~~E~~k~~q-----~~~~l~~ek~~le~el~~~~~~ie~~~~  703 (779)
                      .--+-+.+.-..+-..+..+-+.-...           ..+.++...     ...+|..+.+.|..++.......+.+. 
T Consensus        80 ~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~-  158 (202)
T PF06818_consen   80 NEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQR-  158 (202)
T ss_pred             CHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHH-
Confidence            333333333222222222222211111           223333322     244666777777777666555554443 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004019          704 KAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSS  747 (779)
Q Consensus       704 ~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l  747 (779)
                        ..|+..-..+.....++-.==..+...|-.|-++...++..+
T Consensus       159 --~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l  200 (202)
T PF06818_consen  159 --SSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALEREL  200 (202)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              345555555555555544444444554555555555566554

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF15294 Leu_zip: Leucine zipper

Probab=87.92  E-value=41  Score=35.92  Aligned_cols=61  Identities=16%  Similarity=0.219  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----c-cccccChhHHHHHHHHHHHHHHHHHHHHH
Q 004019          316 ASHQLLELKGLHDGRIKVLQQLYNLQNTLKS----V-KCLSSSKAFLSVKNQLEKSKSEVFKYQAL  376 (779)
Q Consensus       316 a~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~----~-~~i~~S~~yk~L~~q~~~l~~~~~~~r~~  376 (779)
                      +......+..|......-..++-..+..|.-    + .-...|..|..++.-+..=+.++..+|..
T Consensus       210 ~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkr  275 (278)
T PF15294_consen  210 LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKR  275 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHH
Confidence            4445556677777777777777777766552    2 44566889999987776655555555544

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=87.92  E-value=23  Score=33.04  Aligned_cols=43  Identities=21%  Similarity=0.275  Sum_probs=34.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004019          353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELN  395 (779)
Q Consensus       353 S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~  395 (779)
                      +..+-.|.+++..+..++..++..+..|+.+|+.+...+-.+.
T Consensus        15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~   57 (120)
T PF12325_consen   15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM   57 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778888888889999999999999999988877764443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF15294 Leu_zip: Leucine zipper

Probab=86.81  E-value=48  Score=35.46  Aligned_cols=25  Identities=8%  Similarity=0.332  Sum_probs=18.0

Q ss_pred             hhHHHHHHHHHhccHHHHHHHHHHH
Q 004019          446 KEIIAEFRALVSSFPEDMSAMQRQL  470 (779)
Q Consensus       446 ~~~~~E~k~l~~sl~~~i~~L~~e~  470 (779)
                      .....-|+.++.+-..+|..|...+
T Consensus       252 T~ay~NMk~~ltkKn~QiKeLRkrl  276 (278)
T PF15294_consen  252 TAAYRNMKEILTKKNEQIKELRKRL  276 (278)
T ss_pred             cHHHHHhHHHHHhccHHHHHHHHHh
Confidence            3455668888888888887776644

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=86.63  E-value=62  Score=36.62  Aligned_cols=11  Identities=45%  Similarity=0.703  Sum_probs=3.9

Q ss_pred             HHHHHHHHHHH
Q 004019          597 EAEIADMRQKL  607 (779)
Q Consensus       597 e~ei~~L~~~l  607 (779)
                      +.+|..+..++
T Consensus        72 e~~i~~~~~ql   82 (420)
T COG4942          72 ETEIASLEAQL   82 (420)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=86.54  E-value=57  Score=36.10  Aligned_cols=65  Identities=15%  Similarity=0.271  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          590 QQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQ  654 (779)
Q Consensus       590 ~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~q  654 (779)
                      .+.+..+..+++.+..+-.+.+-.+..+.++-.-...+..+|+++--.+..+.+++..+..+|.-
T Consensus       129 ~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~  193 (499)
T COG4372         129 RQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKL  193 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444455554555555556666666666666666665555543

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=86.43  E-value=56  Score=35.91  Aligned_cols=142  Identities=18%  Similarity=0.295  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 004019          377 FEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALV  456 (779)
Q Consensus       377 ~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~  456 (779)
                      +..|++...=|-|+. .+.                +.=...++..+..+..++..|...++..      ..++..+...-
T Consensus       130 ~aRl~aK~~WYeWR~-~ll----------------~gl~~~L~~~~~~L~~D~~~L~~~~~~l------~~~~~~l~~~~  186 (325)
T PF08317_consen  130 YARLEAKKMWYEWRM-QLL----------------EGLKEGLEENLELLQEDYAKLDKQLEQL------DELLPKLRERK  186 (325)
T ss_pred             HHHHHHHHHHHHHHH-HHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence            445677777777775 221                1122344444444444444444444332      23444455555


Q ss_pred             hccHHHHHHHHHHHHHhH-HHhHHHHHHHHhHHhHHHHHHhhHhhhHHHhhhhhhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 004019          457 SSFPEDMSAMQRQLSKYK-EAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLI  535 (779)
Q Consensus       457 ~sl~~~i~~L~~e~~r~k-~~~~e~~~l~~e~~~l~~~~~~~~~e~~~l~~~~~~~~~eik~Lr~q~~~l~e~~~elk~~  535 (779)
                      +.|..++..|+.-+...- ....++..++.++.+....+..+..++..+..++..-...|..+..++..+.....+++-+
T Consensus       187 ~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~  266 (325)
T PF08317_consen  187 AELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI  266 (325)
T ss_pred             HHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555566655555443322 2335566677777777777777766777777777777777778888877777777777766


Q ss_pred             HHHHhh
Q 004019          536 LDMYRR  541 (779)
Q Consensus       536 ld~~~~  541 (779)
                      ++..++
T Consensus       267 ~~~~r~  272 (325)
T PF08317_consen  267 REECRG  272 (325)
T ss_pred             HHHhcC
Confidence            665544

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=86.07  E-value=40  Score=33.91  Aligned_cols=68  Identities=9%  Similarity=0.146  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004019          707 RIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIE  774 (779)
Q Consensus       707 ~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~  774 (779)
                      .+......+..........++.++..+-.....+.-+++.+..|....+..+..+.....++-.++-.
T Consensus       127 ~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~e  194 (205)
T KOG1003|consen  127 SLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKE  194 (205)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333344444444444444444444444444444433

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=86.00  E-value=1.1e+02  Score=38.75  Aligned_cols=20  Identities=10%  Similarity=0.207  Sum_probs=7.7

Q ss_pred             HHHHhhhhhhHHHHHHHHHH
Q 004019          152 MEEDRETGIPRTKNIVSNIL  171 (779)
Q Consensus       152 ~e~~L~~r~~~tk~~l~~l~  171 (779)
                      |..-|......-+.++..|+
T Consensus       145 ~~~fl~~~~~er~~il~~l~  164 (908)
T COG0419         145 FDAFLKSKPKERKEILDELF  164 (908)
T ss_pred             HHHHHhcCcHHHHHHHHHHh
Confidence            33333333333333444444

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=85.90  E-value=54  Score=35.21  Aligned_cols=37  Identities=19%  Similarity=0.321  Sum_probs=21.6

Q ss_pred             ccHHHHHHHHHHHHHhHH--------HhHHHHHHHHhHHhHHHHH
Q 004019          458 SFPEDMSAMQRQLSKYKE--------AALDIHILRADVLSLTNVL  494 (779)
Q Consensus       458 sl~~~i~~L~~e~~r~k~--------~~~e~~~l~~e~~~l~~~~  494 (779)
                      .|+.+|.+|..++...|-        ...++..++....++...+
T Consensus         3 ~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~l   47 (305)
T PF14915_consen    3 MLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSL   47 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367778888877766542        3344555555555555444

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=85.84  E-value=50  Score=34.91  Aligned_cols=60  Identities=27%  Similarity=0.408  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004019          205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE  271 (779)
Q Consensus       205 l~~E~~~L~~~~~~L~~k~k~l~~e~~~~~d~~~~~~~e~~~L~~~Le~~~~el~~~~kkl~~lk~e  271 (779)
                      |+-|+..|...++.|......++-+++.       .+..+.-|+|+|..+...++..+-.+-+++++
T Consensus        65 LkREnq~l~e~c~~lek~rqKlshdlq~-------Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsE  124 (307)
T PF10481_consen   65 LKRENQSLMESCENLEKTRQKLSHDLQV-------KESQVNFLEGQLNSCKKQIEKLEQELKRCKSE  124 (307)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhhHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555555544       58888889999998888888888888887753

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=85.68  E-value=99  Score=38.03  Aligned_cols=99  Identities=16%  Similarity=0.157  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004019          669 EGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSV  748 (779)
Q Consensus       669 E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~  748 (779)
                      ........+..+..++..++..+...+.+++.....+...+..+..+..++..+.+-......++..++.....++..+.
T Consensus       590 ~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~  669 (769)
T PF05911_consen  590 EKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLK  669 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            34445666778888888888888888888888888888888888888888888777777777777777666666666655


Q ss_pred             HHHHhHHHHHHHHHHHHHH
Q 004019          749 QVRGSLEESQSKVYKSRLT  767 (779)
Q Consensus       749 elr~~le~~e~~l~e~~~~  767 (779)
                      ++...+..+..++..+...
T Consensus       670 ~~e~E~~~l~~Ki~~Le~E  688 (769)
T PF05911_consen  670 DLEAEAEELQSKISSLEEE  688 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555544444444444433

The function of this family is unknown.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=84.94  E-value=64  Score=35.33  Aligned_cols=33  Identities=12%  Similarity=0.239  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004019          636 ETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL  668 (779)
Q Consensus       636 e~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~  668 (779)
                      +++....+.|+.-...|...++..+++.-.+..
T Consensus       147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~  179 (312)
T smart00787      147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRD  179 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444566666666666666665554444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=84.52  E-value=35  Score=41.73  Aligned_cols=125  Identities=13%  Similarity=0.128  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          624 KNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDM  703 (779)
Q Consensus       624 ~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~  703 (779)
                      ..+..+.|..-|+.+..-.+.+...-..+++.+....-.   +-.    +.   +....+.+.+..++..+...++..+.
T Consensus       591 l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~---LS~----AE---r~~~~EL~~~~~~l~~l~~si~~lk~  660 (717)
T PF10168_consen  591 LRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPV---LSE----AE---REFKKELERMKDQLQDLKASIEQLKK  660 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CCH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666666666666666555444444444321110   100    11   13344555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHH
Q 004019          704 KAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKV  761 (779)
Q Consensus       704 ~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l  761 (779)
                      ++.....++.   .+..........-..+.+.++.-+.+....|.++..++..+...+
T Consensus       661 k~~~Q~~~i~---~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~  715 (717)
T PF10168_consen  661 KLDYQQRQIE---SQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIV  715 (717)
T ss_pred             HHHHHHHHHh---ccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5555433322   222222222334556667777777777777777766655555443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR00634 recN DNA repair protein RecN

Probab=84.24  E-value=98  Score=36.78  Aligned_cols=14  Identities=7%  Similarity=0.159  Sum_probs=7.0

Q ss_pred             HHHHHHHHHhhhHH
Q 004019          559 AWAHVHSLKSSLDE  572 (779)
Q Consensus       559 ~~~e~~~Lk~~L~e  572 (779)
                      ++.++..+++.|.+
T Consensus       166 ~~~~~~~~~~~L~~  179 (563)
T TIGR00634       166 LYQAWLKARQQLKD  179 (563)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44555555555443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=84.17  E-value=1e+02  Score=36.93  Aligned_cols=176  Identities=12%  Similarity=0.142  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-
Q 004019          595 AAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRA-  673 (779)
Q Consensus       595 ~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~-  673 (779)
                      .+......++.+...+...+.-+.+.+.+...   .|.+.|..+..|...+...+.++-+....+.-+.--++. ++-. 
T Consensus       384 rAqea~~~lqqq~~~aee~Lk~v~eav~S~q~---~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ar-k~Ala  459 (739)
T PF07111_consen  384 RAQEARRRLQQQTASAEEQLKLVSEAVSSSQQ---WLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMAR-KLALA  459 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHH-HHHHH
Confidence            33333334444444444443334443333332   577888888888888888888888776666554433222 1111 


Q ss_pred             -----------------HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          674 -----------------RQLQDALLMDKHMMESEIQQANASL--------NFFDMKAARIENQLRFCLDQAQRLAEDRSQ  728 (779)
Q Consensus       674 -----------------~q~~~~l~~ek~~le~el~~~~~~i--------e~~~~~i~~~ee~lk~l~~~~~~leeel~~  728 (779)
                                       ...+.-++++-..+..+++..-.-|        +.....+..+.+....|...+....+.+..
T Consensus       460 qlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~  539 (739)
T PF07111_consen  460 QLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAE  539 (739)
T ss_pred             HHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             1111123444444444433211111        111222233333344444444444444555


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHH-HHHHHHHHHHHH
Q 004019          729 NSANLENTQKRLSDVRKSSVQVRGSLEESQSKVY-KSRLTLMELQIE  774 (779)
Q Consensus       729 ~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~-e~~~~l~E~~~~  774 (779)
                      +...++..+....+.......++..+..-+..+. .++.+++++-..
T Consensus       540 l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsr  586 (739)
T PF07111_consen  540 LEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESR  586 (739)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666666666666666666666555444 445555554443

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=84.09  E-value=77  Score=35.43  Aligned_cols=40  Identities=25%  Similarity=0.312  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHH
Q 004019          421 EIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSK  472 (779)
Q Consensus       421 ~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r  472 (779)
                      +|-++|.+.=+|...+++            |-..|+++|=++|..|..+.+-
T Consensus       180 ~leQLRre~V~lentlEQ------------EqEalvN~LwKrmdkLe~ekr~  219 (552)
T KOG2129|consen  180 TLEQLRREAVQLENTLEQ------------EQEALVNSLWKRMDKLEQEKRY  219 (552)
T ss_pred             hHHHHHHHHHHHhhHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666555543            4558899999999999887754

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=83.77  E-value=1.2e+02  Score=37.37  Aligned_cols=44  Identities=25%  Similarity=0.228  Sum_probs=40.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004019          301 DLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTL  344 (779)
Q Consensus       301 ~~~~l~~~~eE~~~la~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l  344 (779)
                      .+..|+.+..-++...++|-.||+--+--...-...+..+...+
T Consensus       266 ~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql  309 (769)
T PF05911_consen  266 RLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL  309 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999888

The function of this family is unknown.

>KOG3850 consensus Predicted membrane protein [Function unknown]

Probab=83.57  E-value=24  Score=38.87  Aligned_cols=107  Identities=21%  Similarity=0.259  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004019          317 SHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNM  396 (779)
Q Consensus       317 ~~Rl~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~  396 (779)
                      +.-+.||++..+-...|..-.+.|+..+.-                         .|.=.++.||.||--+-+-...+. 
T Consensus       263 ~aileeL~eIk~~q~~Leesye~Lke~~kr-------------------------dy~fi~etLQEERyR~erLEEqLN-  316 (455)
T KOG3850|consen  263 DAILEELREIKETQALLEESYERLKEQIKR-------------------------DYKFIAETLQEERYRYERLEEQLN-  316 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            344667777777777777777777666431                         222233457888877666654454 


Q ss_pred             hhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHH
Q 004019          397 KIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQL  470 (779)
Q Consensus       397 ~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~  470 (779)
                        +..++++.-+++++..++..|...+=.--                   +-..++..-+++++.||..|+.+.
T Consensus       317 --dlteLqQnEi~nLKqElasmeervaYQsy-------------------ERaRdIqEalEscqtrisKlEl~q  369 (455)
T KOG3850|consen  317 --DLTELQQNEIANLKQELASMEERVAYQSY-------------------ERARDIQEALESCQTRISKLELQQ  369 (455)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence              77777766666666666665554442222                   222345556677777776665433

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=83.57  E-value=57  Score=33.50  Aligned_cols=24  Identities=13%  Similarity=0.376  Sum_probs=10.4

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHH
Q 004019          621 LKSKNEEIEAYLSEIETIGQSYDD  644 (779)
Q Consensus       621 l~~~~~e~eaL~~Eie~l~~A~e~  644 (779)
                      +.....+-+.+++++..+..+|.+
T Consensus        71 i~~~~~erdq~~~dL~s~E~sfsd   94 (207)
T PF05010_consen   71 IQKLLKERDQAYADLNSLEKSFSD   94 (207)
T ss_pred             HHHHHhhHHHHHHHHHHHHhhHHH
Confidence            333334444444444444444444

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=83.24  E-value=36  Score=30.94  Aligned_cols=96  Identities=14%  Similarity=0.189  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHH
Q 004019          680 LLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQS  759 (779)
Q Consensus       680 l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~  759 (779)
                      |......+..++..++..++..+.....+..+-..|......+..+...+.+.+..++.++.++-..+.+-+......+.
T Consensus         7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~   86 (107)
T PF09304_consen    7 LEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELES   86 (107)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566777777777777777777777777777777777777777777777777777777777777777777767777


Q ss_pred             HHHHHHHHHHHHHHHH
Q 004019          760 KVYKSRLTLMELQIEL  775 (779)
Q Consensus       760 ~l~e~~~~l~E~~~~l  775 (779)
                      ++-..+...+...+.|
T Consensus        87 r~~k~~~dka~lel~l  102 (107)
T PF09304_consen   87 RLLKAQKDKAILELKL  102 (107)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHH
Confidence            7766666666555443

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=83.20  E-value=94  Score=35.77  Aligned_cols=66  Identities=15%  Similarity=0.202  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          663 NIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQ  728 (779)
Q Consensus       663 ~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~  728 (779)
                      +.+|+++-+-++..+..+.-+++.+..-++...-.-+....+.+.++++.-.+...+...++++.-
T Consensus       235 ~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~  300 (596)
T KOG4360|consen  235 NSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKC  300 (596)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333344444455556666667777776666666666667777788888888888888888877654

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=83.16  E-value=74  Score=34.54  Aligned_cols=135  Identities=16%  Similarity=0.166  Sum_probs=79.0

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          620 ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLN  699 (779)
Q Consensus       620 ~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie  699 (779)
                      .++..+.+...|+.|...+......+.++-..|+.      |-...+..    ++..+..|..++..-..+...-+.+|.
T Consensus       168 Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~------dcv~QL~~----An~qia~LseELa~k~Ee~~rQQEEIt  237 (306)
T PF04849_consen  168 KLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVL------DCVKQLSE----ANQQIASLSEELARKTEENRRQQEEIT  237 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHH------HHHHHhhh----cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444778888888888877777776666665552      22333444    555555566665555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004019          700 FFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMEL  771 (779)
Q Consensus       700 ~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~  771 (779)
                      .+...+-.+..+++.+......       +.+.+...+..=..+..++.+++.+...+..-+++.+..+..+
T Consensus       238 ~LlsqivdlQ~r~k~~~~EnEe-------L~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l  302 (306)
T PF04849_consen  238 SLLSQIVDLQQRCKQLAAENEE-------LQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL  302 (306)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555555555555555544333       3344444444444466667777777777777777766665544

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=83.07  E-value=62  Score=36.59  Aligned_cols=101  Identities=14%  Similarity=0.226  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004019          673 ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRG  752 (779)
Q Consensus       673 ~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~  752 (779)
                      .++.+..+..+...++.....+..........+..+..+++.+..++....++-..+......++.++.+++...++.. 
T Consensus       352 ~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~-  430 (493)
T KOG0804|consen  352 QKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEAL-  430 (493)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-
Confidence            4444555666666666666666666666666777777777777777777776666677777777777666655554444 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh
Q 004019          753 SLEESQSKVYKSRLTLMELQIELV  776 (779)
Q Consensus       753 ~le~~e~~l~e~~~~l~E~~~~le  776 (779)
                        ...+.++.+++..+..+-..++
T Consensus       431 --~s~d~~I~dLqEQlrDlmf~le  452 (493)
T KOG0804|consen  431 --GSKDEKITDLQEQLRDLMFFLE  452 (493)
T ss_pred             --HHHHHHHHHHHHHHHhHheehh
Confidence              3445566666666666554443

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.89  E-value=69  Score=34.02  Aligned_cols=59  Identities=15%  Similarity=0.032  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQ  737 (779)
Q Consensus       679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r  737 (779)
                      ....++..|+..-..++..++.+......++..+..|..+......-+..+......+.
T Consensus       152 ~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~  210 (265)
T COG3883         152 QQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASAL  210 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            44444444444444444445555555555555555555555554444444333333333

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=82.78  E-value=1.1e+02  Score=36.06  Aligned_cols=31  Identities=16%  Similarity=0.363  Sum_probs=20.0

Q ss_pred             hccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhH
Q 004019          457 SSFPEDMSAMQRQLSKYKEAALDIHILRADVLSL  490 (779)
Q Consensus       457 ~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l  490 (779)
                      .++..++..++-.+..   ..+++..++..+.++
T Consensus       105 ~sl~~e~a~lk~~l~e---~~~El~~l~~~l~~l  135 (511)
T PF09787_consen  105 DSLSSELAVLKIRLQE---LDQELRRLRRQLEEL  135 (511)
T ss_pred             ccccchhHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            5667777777665544   556677777766655

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=82.72  E-value=1e+02  Score=35.84  Aligned_cols=64  Identities=13%  Similarity=0.108  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004019          711 QLRFCLDQAQRLAEDRSQNSANLENTQKR---LSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIE  774 (779)
Q Consensus       711 ~lk~l~~~~~~leeel~~~~~~le~~r~~---~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~  774 (779)
                      .+..+..++..+...+..+...++.++..   +...+.++..|++..+..+..+..+-.++.+.++.
T Consensus       318 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~  384 (498)
T TIGR03007       318 ELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVS  384 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333444444444444444444444443   33566677788888888888888888887776654

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=82.10  E-value=76  Score=37.39  Aligned_cols=25  Identities=16%  Similarity=0.271  Sum_probs=13.1

Q ss_pred             HHHHHHHHhhHHHHHHHHhhhHHHH
Q 004019          604 RQKLEAFKRDMVSLSDALKSKNEEI  628 (779)
Q Consensus       604 ~~~l~~~~r~~~~l~~~l~~~~~e~  628 (779)
                      |--|.++.+....++..|...+...
T Consensus       344 RDALAAA~kAY~~yk~kl~~vEr~~  368 (652)
T COG2433         344 RDALAAAYKAYLAYKPKLEKVERKL  368 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4455555555555555555444443

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=81.95  E-value=1e+02  Score=35.18  Aligned_cols=82  Identities=15%  Similarity=0.134  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          625 NEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMK  704 (779)
Q Consensus       625 ~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~  704 (779)
                      +.+-.+...|||.+....-+++   ..   --+.+-+..+++.+=+|++++...++++.+..+-.++-.+-..+-..+..
T Consensus       525 e~e~~a~~~E~eklE~el~~ln---L~---s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~v~~~~~~fk~~  598 (622)
T COG5185         525 ERELVAQRIEIEKLEKELNDLN---LL---SKTSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDITSKFKIN  598 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh---hh---ccchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            4555666677777755333321   11   22334455666777788888888899999999988888876666666666


Q ss_pred             HHHHHHHH
Q 004019          705 AARIENQL  712 (779)
Q Consensus       705 i~~~ee~l  712 (779)
                      |...-+.+
T Consensus       599 IQssledl  606 (622)
T COG5185         599 IQSSLEDL  606 (622)
T ss_pred             HHhhHHHH
Confidence            65444333

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=81.79  E-value=96  Score=34.87  Aligned_cols=26  Identities=12%  Similarity=0.193  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          681 LMDKHMMESEIQQANASLNFFDMKAA  706 (779)
Q Consensus       681 ~~ek~~le~el~~~~~~ie~~~~~i~  706 (779)
                      ..+...+..++..+...+......+.
T Consensus       202 ~~~~~~~~~~l~~~~~~l~~~~~~l~  227 (423)
T TIGR01843       202 ERERAEAQGELGRLEAELEVLKRQID  227 (423)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=81.54  E-value=14  Score=37.50  Aligned_cols=67  Identities=13%  Similarity=0.188  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004019          683 DKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQ  749 (779)
Q Consensus       683 ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~e  749 (779)
                      ........+..+...+..+...+..+++.++........+.+|+..+.-.+-....++..++.+..+
T Consensus       110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~  176 (194)
T PF08614_consen  110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRE  176 (194)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333444444444444444333333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=81.50  E-value=53  Score=31.69  Aligned_cols=100  Identities=14%  Similarity=0.153  Sum_probs=48.7

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          651 QLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNS  730 (779)
Q Consensus       651 rl~qq~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~  730 (779)
                      +-......+.+....+.+|-......+..|......++.++..+......+...+..+...++....++.++..-+....
T Consensus        49 r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~  128 (151)
T PF11559_consen   49 RDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK  128 (151)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444445555555555555555555555555555555555555555555555555554444433


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHh
Q 004019          731 ANLENTQKRLSDVRKSSVQVRGS  753 (779)
Q Consensus       731 ~~le~~r~~~~e~e~~l~elr~~  753 (779)
                      ..+..-.++   .+.++..|+.+
T Consensus       129 tq~~~e~rk---ke~E~~kLk~r  148 (151)
T PF11559_consen  129 TQYEHELRK---KEREIEKLKER  148 (151)
T ss_pred             HHHHHHHHH---HHHHHHHHHHH
Confidence            333332222   44444444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=81.15  E-value=84  Score=33.81  Aligned_cols=49  Identities=20%  Similarity=0.230  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHH
Q 004019          588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIE  636 (779)
Q Consensus       588 ~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie  636 (779)
                      .|...|....++..-|..+|+..+...+.|...+.+-.....+-+.+-+
T Consensus        60 qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~d  108 (305)
T PF14915_consen   60 QYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHD  108 (305)
T ss_pred             HHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            4666677777777777777777655555555544444444444444443

>PLN03188 kinesin-12 family protein; Provisional

Probab=81.09  E-value=1.8e+02  Score=37.51  Aligned_cols=104  Identities=19%  Similarity=0.195  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-chHHHHhhhhhhhhhHHHhhHHHH----HHHHHHHHHHHHHHHH
Q 004019          364 EKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKI-DLVDVFRRSSAVTDSKIADLGIEI----QKQIDEKNRIEMRLEE  438 (779)
Q Consensus       364 ~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~-E~~e~~~~~~~~~~~~~~~lE~~l----~rir~erd~L~~e~e~  438 (779)
                      ..|+.+++..+.++++|+.|.+.-+.--.|+.-.. .+...+.|++.    ++++|+-.-    +|-|.-++ -..++..
T Consensus      1068 eelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e----~ya~l~ek~~~ll~~hr~i~e-gi~dvkk 1142 (1320)
T PLN03188       1068 EELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLE----QYADLEEKHIQLLARHRRIQE-GIDDVKK 1142 (1320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            55777888889999999999877765544442000 02222223321    223332221    12222221 2234444


Q ss_pred             HhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHH
Q 004019          439 ASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKE  475 (779)
Q Consensus       439 ~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~  475 (779)
                      +.+.+|.+..  + -..+++|..+|..|+.|-.+-+.
T Consensus      1143 aaakag~kg~--~-~~f~~alaae~s~l~~ereker~ 1176 (1320)
T PLN03188       1143 AAARAGVRGA--E-SKFINALAAEISALKVEREKERR 1176 (1320)
T ss_pred             HHHHhccccc--h-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555554211  1 25567777888888777655333

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.94  E-value=76  Score=33.15  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 004019          680 LLMDKHMMESEIQQANASLNF  700 (779)
Q Consensus       680 l~~ek~~le~el~~~~~~ie~  700 (779)
                      |..++.....+|..++.+|+.
T Consensus        44 L~~Er~~h~eeLrqI~~DIn~   64 (230)
T PF10146_consen   44 LLQERMAHVEELRQINQDINT   64 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=80.50  E-value=79  Score=33.07  Aligned_cols=180  Identities=16%  Similarity=0.171  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          580 KTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSD-----ALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQ  654 (779)
Q Consensus       580 k~a~e~~a~~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~-----~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~q  654 (779)
                      +..+...+.+++.+..+-.++..++..+...+........     .+...+..   |...-..+.....+++..|..+..
T Consensus        34 ~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~---l~~~~~~L~~~q~~l~~~~~~l~~  110 (240)
T PF12795_consen   34 KKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQR---LSQEQAQLQELQEQLQQENSQLIE  110 (240)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445577788888888888888888877554111111     11111111   222222233334444444444444


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          655 QITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANAS--LNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSAN  732 (779)
Q Consensus       655 q~~e~dd~~~kl~~E~~k~~q~~~~l~~ek~~le~el~~~~~~--ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~  732 (779)
                      ....-+.+.           +.+......+..+...+......  -.-.....-.+.-....+..+...++-++......
T Consensus       111 ~~~~p~~aq-----------~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~r  179 (240)
T PF12795_consen  111 IQTRPERAQ-----------QQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNR  179 (240)
T ss_pred             HHccHHHHH-----------HHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHH
Confidence            444333322           22223333333333333321000  01112333344444555555666666666555555


Q ss_pred             HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004019          733 LENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQI  773 (779)
Q Consensus       733 le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~  773 (779)
                      .+-++.....+...+..+...+..++..++..+..-+|..+
T Consensus       180 q~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae~~~  220 (240)
T PF12795_consen  180 QELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAEQAV  220 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555556666666666666666666655555554443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=80.36  E-value=38  Score=37.06  Aligned_cols=29  Identities=10%  Similarity=0.177  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHhHHHHHHHHH
Q 004019          734 ENTQKRLSDVRKSSVQVRGSLEESQSKVY  762 (779)
Q Consensus       734 e~~r~~~~e~e~~l~elr~~le~~e~~l~  762 (779)
                      -.+...+.++..+...+..+++....++.
T Consensus       102 n~~~~~l~~~~~e~~sl~~q~~~~~~~L~  130 (314)
T PF04111_consen  102 NELQLELIEFQEERDSLKNQYEYASNQLD  130 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	779
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	3e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 97.6 bits (242), Expect = 6e-21
 Identities = 102/696 (14%), Positives = 207/696 (29%), Gaps = 174/696 (25%)

Query: 39  DTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEEL--ITDL 96
           +T   Q+Q + ++             E+ F    + +   D    +++K  EE+  I   
Sbjct: 10  ETGEHQYQYKDILS----------VFEDAFVDNFDCKDVQDMPKSILSK--EEIDHIIMS 57

Query: 97  ESCSMRARESSNGQESRCLSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQME--- 153
           +               R    +           F+         E     N    M    
Sbjct: 58  KDAVSGTL--------RLFWTLLS-KQEEMVQKFV---------EEVLRINYKFLMSPIK 99

Query: 154 -EDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNL 212
            E R+  +     I        D L++              D     K + +       L
Sbjct: 100 TEQRQPSMMTRMYI-----EQRDRLYN--------------DNQVFAKYNVSRLQPYLKL 140

Query: 213 RLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNC-K--LAA-- 267
           R AL+           EL+  +++       ++ + G               K  +A   
Sbjct: 141 RQALL-----------ELRPAKNV------LIDGVLG-------------SGKTWVALDV 170

Query: 268 LRAERDVTKGAFFPV--LNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKG 325
             + + V     F +  LNL N +     +   Q+ L  ++       D +S+  L +  
Sbjct: 171 CLSYK-VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 326 LHDGRIKVLQQLYNLQNTL------KSVKCLSSSKAF------------LSVKNQLEKSK 367
           +    ++ L +    +N L      ++ K      AF              V + L  + 
Sbjct: 230 IQA-ELRRLLKSKPYENCLLVLLNVQNAKAW---NAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 368 SEVFKYQALFEKLQVEKDNLAWRETE------LNMKI-DLVDVFRRSSAVTDS--KIADL 418
           +           L      L   E +      L+ +  DL         +T +  +++ +
Sbjct: 286 TTHI-------SLDHHSMTLTPDEVKSLLLKYLDCRPQDL-----PREVLTTNPRRLSII 333

Query: 419 GIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAAL 478
              I+   D     +   +  + +     I +    L    P +   M  +LS +     
Sbjct: 334 AESIR---DGLATWD-NWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSVFPP--- 383

Query: 479 DIHILRADVLSL------TNVLERKVKECE--TLLA-SSADQVAEIHKLQAMVQDLTDSN 529
             HI    +LSL       + +   V +    +L+     +    I  +   ++   ++ 
Sbjct: 384 SAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 530 LEL-KLILDMYR-RESTDSRDVLAARDLEYKAWAHV--HSLKSSLDEQSLELRVKTA--- 582
             L + I+D Y   ++ DS D++     +Y    H+  H       E+    R+      
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-HIGHHLKNIEHPERMTLFRMVFLDFR 501

Query: 583 -IEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQS 641
            +E +         A   I +  Q+L+ +K  +       +     I  +L +IE     
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561

Query: 642 YDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQ 677
                     LL+     +D  I    E    +Q+Q
Sbjct: 562 SKYT-----DLLRIALMAEDEAI--FEEA--HKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 3e-09
 Identities = 73/518 (14%), Positives = 163/518 (31%), Gaps = 110/518 (21%)

Query: 6   EPDRKRRHFSSISPTAATAKKNPFFP----SSEEK--KIDTAVLQFQNQKLV-------- 51
           +P    R +  I         N  F     S  +   K+  A+L+ +  K V        
Sbjct: 104 QPSMMTRMY--IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 52  --QKLETQKVEYSALENKFA------QLKERQQPYDSTLKVVNKSWEELITDLE-----S 98
               +         ++ K         LK    P ++ L+++ K   ++  +       S
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 99  CSMRARESSNGQESR----------CLSIIEDVTPHPSH-DAFLSR---LMET---GATE 141
            +++ R  S   E R          CL ++ +V  +    +AF      L+ T     T+
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 142 SSSADNCPNQMEEDRETGI--PRTKNIVSNIL-AAVDNLWH-------LKGGLYAAVLKD 191
             SA    +   +     +     K+++   L     +L          +  + A  ++D
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 192 LQD--GGSKQ----KASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAK-L 244
                   K     K ++ ++S +  L  A         S+           A      L
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-------SAHIPTILL 392

Query: 245 NRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRD 304
           + +  ++  +   +        +L  E+   +      +             + +  L +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSL-VEKQPKESTIS--I-----P---SIYLELKVKLEN 441

Query: 305 MESVHKELMDQ-ASHQLLELKGLH----DGRIKVLQQL-YNLQNTLKSVKCLSSSKAFLS 358
             ++H+ ++D     +  +   L     D        + ++L+N     +       FL 
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF--YSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 359 ---VKNQLEKSKSEVFKYQALFEKLQVEK-------DNLAWRETELNMKIDLVD-VFRRS 407
              ++ ++    +      ++   LQ  K       DN    E  +N    ++D + +  
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN---AILDFLPKIE 556

Query: 408 SAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGR 445
             +  SK  DL   ++  +  ++  E   EEA ++  R
Sbjct: 557 ENLICSKYTDL---LRIALMAED--EAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 9e-08
 Identities = 65/374 (17%), Positives = 134/374 (35%), Gaps = 88/374 (23%)

Query: 434 MRLEEASREPGRKEIIAEFR-ALVSSFP-EDMSAMQRQLSKYKEAALDIHILRADVLSLT 491
           M  E    +   K+I++ F  A V +F  +D+  M + +   +E  +D       ++   
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE--ID------HIIMSK 58

Query: 492 NVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRE----STDSR 547
           + +   ++   TLL+   + V      Q  V+++   N +   ++   + E    S  +R
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMV------QKFVEEVLRINYKF--LMSPIKTEQRQPSMMTR 110

Query: 548 DVLAARDLEYKAWAHVHSL-KSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADM--- 603
             +  RD   + +       K ++      L+++ A+  E    + +      I  +   
Sbjct: 111 MYIEQRD---RLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAKNVL-----IDGVLGS 161

Query: 604 -RQKLEAFKRDMVSLSDALKSKNE-EIEAYLSEIETIGQ--SYDDMQTQNQQLLQQI--- 656
            +  +       V LS  ++ K + +I  +L     +    S + +    Q+LL QI   
Sbjct: 162 GKTWVAL----DVCLSYKVQCKMDFKI-FWL----NLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 657 -TERDDY--NIKLVLEGVRAR--------QLQDALL-MDKHMMESEIQQANASLNFFDMK 704
            T R D+  NIKL +  ++A           ++ LL +        +Q A A  N F++ 
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL------NVQNAKA-WNAFNLS 265

Query: 705 AARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKS 764
                     C    + L   R +   +  +          S      +L   + K    
Sbjct: 266 ----------C----KILLTTRFKQVTDFLSAATT---THISLDHHSMTLTPDEVKSLLL 308

Query: 765 RLTLMELQIELVKE 778
           +      Q +L +E
Sbjct: 309 KYLDCRPQ-DLPRE 321

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 63.7 bits (155), Expect = 2e-10
 Identities = 57/367 (15%), Positives = 141/367 (38%), Gaps = 34/367 (9%)

Query: 294  RVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSS 353
            +V  ++ +++  +   +   ++      ELK L     ++ ++   LQ  L++   L + 
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910

Query: 354  KAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDS 413
               + V+   +K + E      +  +++ E++    +      K+               
Sbjct: 911  AEEMRVRLAAKKQELEE-ILHEMEARIEEEEERSQ-QLQAEKKKMQ-------------Q 955

Query: 414  KIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKY 473
            ++ DL    ++Q++E+     +L+        K         +    +D+  M+ Q +K 
Sbjct: 956  QMLDL----EEQLEEEEAARQKLQLEKVTADGK---------IKKMEDDILIMEDQNNKL 1002

Query: 474  KEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELK 533
             +    +    +D+ +     E K K    L       ++E   L+  ++    S  EL+
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE---LEVRLKKEEKSRQELE 1059

Query: 534  LILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDE-QSLELRVKTAIEAEAISQQR 592
             I      ES+D  + +A  +L+ +       L    +E Q+   R++     +  + ++
Sbjct: 1060 KIKRKLEGESSDLHEQIA--ELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117

Query: 593  LAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQL 652
            +   E+ I+D+++ LE+ K          +  +EE+EA  +E+E    +    Q      
Sbjct: 1118 IRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSD 1177

Query: 653  LQQITER 659
             +   ++
Sbjct: 1178 YKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 39/341 (11%), Positives = 114/341 (33%), Gaps = 36/341 (10%)

Query: 435  RLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVL 494
             L+   +E   +    E +       +  + ++    K+ +   + ++L+  + + T + 
Sbjct: 849  LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908

Query: 495  ERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARD 554
                +    L A   +    +H+++A +++  + + +L+                   + 
Sbjct: 909  AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQA----------------EKKK 952

Query: 555  LEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDM 614
            ++      +  L+  L+E+                Q     A+ +I  M   +   +   
Sbjct: 953  MQ----QQMLDLEEQLEEEEAAR---------QKLQLEKVTADGKIKKMEDDILIMEDQN 999

Query: 615  VSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRAR 674
              L+   K   E +    + +    +   ++     +    I    +  ++L     +  
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMI---SELEVRLK----KEE 1052

Query: 675  QLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLE 734
            + +  L   K  +E E    +  +     + A ++ QL    ++ Q         ++   
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN 1112

Query: 735  NTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIEL 775
            N  K++ ++      ++  LE  ++   K+     +L  EL
Sbjct: 1113 NALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.5 bits (126), Expect = 5e-07
 Identities = 51/328 (15%), Positives = 114/328 (34%), Gaps = 20/328 (6%)

Query: 353  SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTD 412
             KA   +K   +K      +   L EKLQ E +  A  E                    +
Sbjct: 874  QKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEME 933

Query: 413  SKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSK 472
            ++I +     Q+   EK +++ ++ +       +E + E  A       +      ++ K
Sbjct: 934  ARIEEEEERSQQLQAEKKKMQQQMLDL------EEQLEEEEAARQKLQLEKVTADGKIKK 987

Query: 473  YKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLEL 532
             ++  L +      +     +LE +V +  T LA   ++   + KL+   + +     EL
Sbjct: 988  MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS---EL 1044

Query: 533  KLILDMYRRESTDSRDVLAARDLEYK-AWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQ 591
            ++ L    +   +   +    + E       +  L++ + E   +L  K         ++
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK---------EE 1095

Query: 592  RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQ 651
             L AA A + D   +     + +  L   +    E++E+  +      +   D+  + + 
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155

Query: 652  LLQQITERDDYNIKLV-LEGVRARQLQD 678
            L  ++ +  D       L G   +   D
Sbjct: 1156 LKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 45/333 (13%), Positives = 119/333 (35%), Gaps = 40/333 (12%)

Query: 185  YAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKL 244
            +  + ++      K +A + L +E + +R+ L     + + +  E+++R + + +   +L
Sbjct: 887  HTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQL 946

Query: 245  NRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRD 304
               K +++  + +LEE                                 ++ +E+   + 
Sbjct: 947  QAEKKKMQQQMLDLEE---------------------------------QLEEEEAARQK 973

Query: 305  MESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLE 364
            ++        +      ++  + D   K+ ++   L+  +  +   ++          L 
Sbjct: 974  LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT--TNLAEEEEKAKNLT 1031

Query: 365  KSKSEV-FKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQ 423
            K K++       L  +L+ E+ +    E                 A   ++IA+L  ++ 
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 424  KQIDEKNRIEMRLEEASREPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHI 482
            K+ +E      RLE+ + +     + I E  + +S   ED+ + +   +K ++   D   
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD--- 1148

Query: 483  LRADVLSLTNVLERKVKECETLLASSADQVAEI 515
            L  ++ +L   LE  +    T          + 
Sbjct: 1149 LSEELEALKTELEDTLDTTATQQELRGSDYKDD 1181

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 46.8 bits (110), Expect = 3e-05
 Identities = 69/525 (13%), Positives = 166/525 (31%), Gaps = 24/525 (4%)

Query: 185 YAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQS--RQDIDAKDKA 242
           Y +       G  K + ++N   +V  +      L   ++ L  +L    R+ I   +  
Sbjct: 217 YVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENR 276

Query: 243 KLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDL 302
                   ++  +++  +        + +        F  L    +          +  +
Sbjct: 277 APENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKM 336

Query: 303 RDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSV--KCLSSSKAFLSVK 360
               +     ++QA     E       R++ L  L        S+        +A L  K
Sbjct: 337 VSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQK 396

Query: 361 NQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGI 420
           +    + SE+   +AL +K +  + +LA  +  +     +              +     
Sbjct: 397 DYETATLSEI---KALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQ 453

Query: 421 EIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDI 480
           +I  Q D    +  +  EA      ++++     L   + +  +     +    E   D 
Sbjct: 454 KICDQWDNLGALTQKRREALERT--EKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQD- 510

Query: 481 HILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYR 540
                 ++     ++      E   A+  D   E   +  +  +++       + +    
Sbjct: 511 ----TFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTN 566

Query: 541 RESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEI 600
             +T +   +  +      W HV  L    D Q+L        + E + +Q  A A    
Sbjct: 567 PYTTITPQEINGK------WEHVRQLVPRRD-QALMEEHARQQQNERLRKQFGAQANVIG 619

Query: 601 ADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERD 660
             ++ K+E   R  + +   L+ +   +  Y   I       D ++  +QQ+ + +   +
Sbjct: 620 PWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDN 679

Query: 661 DYNIKLVLEGVRAR--QLQDALLMDKHMMESEIQQANASLNFFDM 703
            +     +E +R    QL   +    + +E++I   +A     + 
Sbjct: 680 KH-TNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQ 723

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 28/205 (13%), Positives = 69/205 (33%), Gaps = 13/205 (6%)

Query: 447  EIIAEFRALVSSFPEDMSAMQRQ----LSKYKEAALDIHILRADVLSLTNVLERKVKECE 502
            + I +   L++   + +   Q      L K ++    +  L+  +      L+ K ++  
Sbjct: 1899 DFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQAN 1958

Query: 503  TLLASSADQVAEIHKLQAMVQ----DLTDSNLELKLILDMYRRESTDSRDVLAARDLEYK 558
              L             Q   +     L   N E+ +       +   +      R+   +
Sbjct: 1959 QKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQ 2018

Query: 559  AWAHVHSLKSSLDE-----QSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRD 613
                 + LK   DE      +LE  + T  E  A   +     + E + ++ K++     
Sbjct: 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIAL 2078

Query: 614  MVSLSDALKSKNEEIEAYLSEIETI 638
            + +L+       ++ E + +++ T+
Sbjct: 2079 LDNLNSERGRWEQQSENFNTQMSTV 2103

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 28/205 (13%), Positives = 70/205 (34%), Gaps = 21/205 (10%)

Query: 566  LKSSLDEQSLELRVKT-----AIEAEAISQQRLAAA----EAEIADMRQKLEAFKRDMVS 616
            LK+ +  Q    R+        ++ EA S +R        E +I  +++K++   ++  S
Sbjct: 887  LKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946

Query: 617  LSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQL 676
            L + + +          ++ +  +     + + +    ++    +   KL       R+ 
Sbjct: 947  LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL-------RKE 999

Query: 677  QDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENT 736
                  +K  +E    +          +       L+   ++  R   D  Q     E  
Sbjct: 1000 LHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD--QAKEITETM 1057

Query: 737  QKRLSDVRKSSVQVRGSLEESQSKV 761
            +K+L +  K   Q+   L + + + 
Sbjct: 1058 EKKLVEETK---QLELDLNDERLRY 1079

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	779
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.77
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.59
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.93
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.85
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.09
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.48
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.38
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.43
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.97
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.66
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	93.55
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	93.32
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	92.23
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	92.2
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	92.14
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	91.82
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	90.66
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	89.78
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	89.45
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	89.04
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	88.59
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	87.06
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	86.71
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	86.19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	84.78
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	84.62
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	83.25
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	83.04
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	82.58
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	82.15
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	82.08
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	81.53
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	81.46
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	81.02
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	80.48

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.77  E-value=0.00022  Score=73.31  Aligned_cols=91  Identities=14%  Similarity=0.240  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 004019          685 HMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKS  764 (779)
Q Consensus       685 ~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~  764 (779)
                      ..+..++..+...+......+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (284)
T 1c1g_A          184 ELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ  263 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333444444444444444444444444444444444444445555555555555555555


Q ss_pred             HHHHHHHHHHH
Q 004019          765 RLTLMELQIEL  775 (779)
Q Consensus       765 ~~~l~E~~~~l  775 (779)
                      ...+..+...+
T Consensus       264 ~~~~~~~~~~~  274 (284)
T 1c1g_A          264 KLKYKAISEEL  274 (284)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.59  E-value=0.00098  Score=68.32  Aligned_cols=83  Identities=7%  Similarity=0.152  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHH
Q 004019          682 MDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKV  761 (779)
Q Consensus       682 ~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l  761 (779)
                      ..+..+...+..+...+..+...+..++..+..+...+..+...+..+...+..+...+..+...+..+...+..+...+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (284)
T 1c1g_A          195 EEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEL  274 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHH
Q 004019          762 YKS  764 (779)
Q Consensus       762 ~e~  764 (779)
                      ..+
T Consensus       275 ~~~  277 (284)
T 1c1g_A          275 DHA  277 (284)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.93  E-value=1.7e-05  Score=99.54  Aligned_cols=21  Identities=14%  Similarity=0.234  Sum_probs=0.0

Q ss_pred             HHhHHHHHHhHHHHHHHHHHH
Q 004019          744 RKSSVQVRGSLEESQSKVYKS  764 (779)
Q Consensus       744 e~~l~elr~~le~~e~~l~e~  764 (779)
                      +....++...++.+...+.++
T Consensus      1143 e~q~~~L~~ele~L~~~Ieel 1163 (1184)
T 1i84_S         1143 EKQKRDLSEELEALKTELEDT 1163 (1184)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.85  E-value=4.1e-05  Score=96.11  Aligned_cols=83  Identities=19%  Similarity=0.166  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Q 004019          678 DALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEES  757 (779)
Q Consensus       678 ~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~  757 (779)
                      ..+..++..++.++..+...++.....+..++..+..+..++..+.+++......+........++...+.+++.+++.+
T Consensus      1084 ~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel 1163 (1184)
T 1i84_S         1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDT 1163 (1184)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444445555555555555555555555444444444555555666666666666655


Q ss_pred             HHH
Q 004019          758 QSK  760 (779)
Q Consensus       758 e~~  760 (779)
                      ...
T Consensus      1164 ~~v 1166 (1184)
T 1i84_S         1164 LDT 1166 (1184)
T ss_dssp             ---
T ss_pred             hhH
Confidence            443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.09  E-value=0.059  Score=52.51  Aligned_cols=115  Identities=18%  Similarity=0.194  Sum_probs=84.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHH
Q 004019          353 SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI  432 (779)
Q Consensus       353 S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L  432 (779)
                      .|.|......+.+|+..+.++...+..++.+.+.|...=+++++..|..-      ..++.++..|...+.++..+.+.+
T Consensus         2 ~~~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL------~~~Ek~~~~L~~~~~~L~~E~e~~   75 (189)
T 2v71_A            2 AMDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQL------VQAEQRNRDLQADNQRLKYEVEAL   75 (189)
T ss_dssp             --CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36788889999999999999999999999999999777556654333111      123778888888888888888888


Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHH
Q 004019          433 EMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHI  482 (779)
Q Consensus       433 ~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~  482 (779)
                      ..++...         ..+.-..+++|+.+|..|......++...-++.-
T Consensus        76 k~K~~~~---------~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq  116 (189)
T 2v71_A           76 KEKLEHQ---------YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ  116 (189)
T ss_dssp             HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888544         4455577888888888888887776655433333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.48  E-value=0.34  Score=49.88  Aligned_cols=62  Identities=10%  Similarity=0.094  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          671 VRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSAN  732 (779)
Q Consensus       671 ~k~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~  732 (779)
                      ++....|.++..+++.++.++..+...+-.....+..+...+..+...+..+..++......
T Consensus        86 v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~  147 (256)
T 3na7_A           86 IKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL  147 (256)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666777777777777777777777776666666666666666666666655444433

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.38  E-value=0.6  Score=45.40  Aligned_cols=48  Identities=15%  Similarity=0.129  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 004019          719 AQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRL  766 (779)
Q Consensus       719 ~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~  766 (779)
                      ...+.+++..+......++..+++++....+|-+..=.+..-+.+++.
T Consensus        90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~  137 (189)
T 2v71_A           90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQ  137 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHH
Confidence            444444444444444444444444444444444443333333333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.43  E-value=8.7  Score=52.48  Aligned_cols=167  Identities=13%  Similarity=0.121  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004019          589 SQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL  668 (779)
Q Consensus       589 ~~~kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqeqn~rl~qq~~e~dd~~~kl~~  668 (779)
                      ...||..+..++++|+..|..       .+..|..+..+.+.++.+|..-.+.-+.-...-..   ...+......++..
T Consensus      1925 GL~KL~et~~~V~~l~~~L~~-------~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~---~~~~~~~~~~ei~~ 1994 (3245)
T 3vkg_A         1925 GLKKLRDTEAQVKDLQVSLAQ-------KNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARE---LQVQLDVRNKEIAV 1994 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            334555566666666665544       45577778888888888886654433321111110   11111111111111


Q ss_pred             HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          669 EGVRARQLQ------DALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSD  742 (779)
Q Consensus       669 E~~k~~q~~------~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e  742 (779)
                      .+..+...+      .-++.+...++.++...+..+......+..+++++..|..+...+..+...+...++....++..
T Consensus      1995 ~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A         1995 QKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp             HHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111111      12344555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHhHHHHHHhHHHHHHHHHHHH
Q 004019          743 VRKSSVQVRGSLEESQSKVYKSR  765 (779)
Q Consensus       743 ~e~~l~elr~~le~~e~~l~e~~  765 (779)
                      .++-+..|-.+...=...+.+++
T Consensus      2075 A~~Li~gL~~Ek~RW~~~~~~l~ 2097 (3245)
T 3vkg_A         2075 SIALLDNLNSERGRWEQQSENFN 2097 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhccccHHHHHHHHH
Confidence            55555555444443333333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.97  E-value=11  Score=51.35  Aligned_cols=17  Identities=29%  Similarity=0.329  Sum_probs=9.5

Q ss_pred             HHHHHHHHHhhhHHhcH
Q 004019          559 AWAHVHSLKSSLDEQSL  575 (779)
Q Consensus       559 ~~~e~~~Lk~~L~e~~~  575 (779)
                      +..+|+.|+..|.....
T Consensus      1932 t~~~V~~l~~~L~~~~~ 1948 (3245)
T 3vkg_A         1932 TEAQVKDLQVSLAQKNR 1948 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44556666666655443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.66  E-value=1.8  Score=53.53  Aligned_cols=51  Identities=16%  Similarity=0.344  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          594 AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQT  647 (779)
Q Consensus       594 ~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~l~~A~e~lqe  647 (779)
                      ...+..+.+|+.+|+...+....+.+.+...+   ..+..|+..+....++|..
T Consensus       924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~---~~~~~e~~~L~~~l~~le~  974 (1080)
T 2dfs_A          924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE---ITYSTETEKLRSDVERLRM  974 (1080)
T ss_dssp             ---------------------------CHHHH---HHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHH
Confidence            45566777777777766665555555443322   4455566665555555444

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=93.55  E-value=2.9  Score=36.50  Aligned_cols=78  Identities=13%  Similarity=0.229  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 004019          679 ALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEE  756 (779)
Q Consensus       679 ~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~  756 (779)
                      .+....+.++.++..+..........+..+..+++.+..++..+...+......++...+.+.+.+..+..|.+++.-
T Consensus        20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriql   97 (101)
T 3u59_A           20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444445555555555555555555555555555555566666666555543

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=93.32  E-value=3.8  Score=35.74  Aligned_cols=38  Identities=8%  Similarity=0.182  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 004019          717 DQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSL  754 (779)
Q Consensus       717 ~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~l  754 (779)
                      .++..+...+......++...+.+.+.+..+..|.+++
T Consensus        58 ~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri   95 (101)
T 3u1c_A           58 DSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333344444444444444444444443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=92.23  E-value=5.4  Score=34.72  Aligned_cols=86  Identities=14%  Similarity=0.193  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 004019          685 HMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKS  764 (779)
Q Consensus       685 ~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~  764 (779)
                      +++...++.+....+.+...+..++.+++.+......++.++..+...+......+..+...+.+.+..++..+......
T Consensus         5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~A   84 (101)
T 3u59_A            5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDA   84 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555566666666666666666666666666666665555555555555555555555555555555555544


Q ss_pred             HHHHHH
Q 004019          765 RLTLME  770 (779)
Q Consensus       765 ~~~l~E  770 (779)
                      .-.++-
T Consensus        85 E~evas   90 (101)
T 3u59_A           85 EAEVAS   90 (101)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=92.20  E-value=1.1  Score=40.47  Aligned_cols=104  Identities=14%  Similarity=0.111  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 004019          321 LELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDL  400 (779)
Q Consensus       321 ~ELe~l~~e~~~l~~e~~~Lk~~l~~~~~i~~S~~yk~L~~q~~~l~~~~~~~r~~~e~Lq~er~~~~~~~~E~~~~~E~  400 (779)
                      ..++.|..++..|..++..|+++-.        +.-..|+.++..|+++++..+....+...+.+.++..+.........
T Consensus        15 ~~Ie~Lkreie~lk~ele~l~~E~q--------~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~   86 (120)
T 3i00_A           15 HLIERLYREISGLKAQLENMKTESQ--------RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQRED   86 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4667777777777777777776632        45568999999999999999988777788887777776544433333


Q ss_pred             HHHHhhhhhhhhhHHHhhHHHHHHHHHHHHHH
Q 004019          401 VDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI  432 (779)
Q Consensus       401 ~e~~~~~~~~~~~~~~~lE~~l~rir~erd~L  432 (779)
                      .+-+.+...+.+.+....|..+.++..-|-+|
T Consensus        87 ~~~~q~~~~e~E~kAqa~Eerf~KLKe~yteL  118 (120)
T 3i00_A           87 TEKAQRSLSEIERKAQANEQRYSKLKEKYSEL  118 (120)
T ss_dssp             --------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344344445666666677776666665554

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=92.14  E-value=5.6  Score=34.67  Aligned_cols=74  Identities=15%  Similarity=0.092  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHH
Q 004019          689 SEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVY  762 (779)
Q Consensus       689 ~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~  762 (779)
                      ..++.+..+.+.+...+..++..++.+.......+.++..+...+......+..+...+.+.+..++..++...
T Consensus         9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~   82 (101)
T 3u1c_A            9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA   82 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444444333333333333333344444444444433333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=91.82  E-value=2.6  Score=52.12  Aligned_cols=19  Identities=16%  Similarity=0.130  Sum_probs=8.3

Q ss_pred             HHHhhhhhhHHHHHHHHHH
Q 004019          153 EEDRETGIPRTKNIVSNIL  171 (779)
Q Consensus       153 e~~L~~r~~~tk~~l~~l~  171 (779)
                      +++...|-.-+|.+-++||
T Consensus       394 ~qa~~~rdalak~lY~~LF  412 (1080)
T 2dfs_A          394 LHAINARDALAKHIYANLF  412 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=89.78  E-value=11  Score=34.14  Aligned_cols=46  Identities=15%  Similarity=0.236  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 004019          592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIET  637 (779)
Q Consensus       592 kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~~Eie~  637 (779)
                      .++..+.++..|+..+........++........++-+.|...+..
T Consensus        14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~   59 (129)
T 2fxo_A           14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQA   59 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666777777777666555555555555445555444444433

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=89.45  E-value=11  Score=33.68  Aligned_cols=102  Identities=20%  Similarity=0.262  Sum_probs=67.4

Q ss_pred             hhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHH
Q 004019          412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLT  491 (779)
Q Consensus       412 ~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~  491 (779)
                      +..|++|+.|+--+..+.++...+++..      +..+.|-+-.+..+++++..-+.++.+          ||++++.+.
T Consensus        10 ~~~ia~L~~D~~s~~~eleEnqeEL~iV------gkML~EEqgKVDQlqKRn~~HQKEi~~----------Lrae~~~~Q   73 (167)
T 4gkw_A           10 EDEVADLKQDTESLQKQLEENQEELEIV------GNMLREEQGKVDQLQKRNVAHQKEIGK----------LRAELGTAQ   73 (167)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhHHHHHHhccHHHHHHHH----------HHHHHHHHH
Confidence            5678899999988888888888888663      456666677777777777776666655          677777776


Q ss_pred             HHHHhhHhhhHHHhhhhhhHHHHHHHHHHHHHhhhhhH
Q 004019          492 NVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSN  529 (779)
Q Consensus       492 ~~~~~~~~e~~~l~~~~~~~~~eik~Lr~q~~~l~e~~  529 (779)
                      .-|......++.-+.+-.-+.-.|++|+.-...+++++
T Consensus        74 Rn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKD  111 (167)
T 4gkw_A           74 RNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKD  111 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHH
T ss_pred             HhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhh
Confidence            66655433333332233344556677766666666543

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=89.04  E-value=5.5  Score=35.23  Aligned_cols=97  Identities=13%  Similarity=0.138  Sum_probs=60.8

Q ss_pred             hhHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHhccHHHHHHHHHHHHHhHHHhHHHHHHHHhHHhHH
Q 004019          412 DSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLT  491 (779)
Q Consensus       412 ~~~~~~lE~~l~rir~erd~L~~e~e~~~~~~~~~~~~~E~k~l~~sl~~~i~~L~~e~~r~k~~~~e~~~l~~e~~~l~  491 (779)
                      +.+..+|.....|+..++|.+..++........         ..+++|+.++..|....+.++...-++.--+-   ++.
T Consensus         2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~---------~~~~~Lq~El~~lr~~~~~l~~~iReLEq~ND---DLE   69 (111)
T 2v66_B            2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY---------KQVSVLEDDLSQTRAIKEQLHKYVRELEQAND---DLE   69 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch---HHH
Confidence            567788999999999999999999977655544         77888888888888887776655333333222   333


Q ss_pred             HHHHhhHhhhHHHhhhhhhHHHHHHHHHH
Q 004019          492 NVLERKVKECETLLASSADQVAEIHKLQA  520 (779)
Q Consensus       492 ~~~~~~~~e~~~l~~~~~~~~~eik~Lr~  520 (779)
                      .+--.....+.+++.+|...-+.+.-|..
T Consensus        70 R~~R~t~~SLeD~E~k~n~aiErnalLE~   98 (111)
T 2v66_B           70 RAKRATIVSLEDFEQRLNQAIERNAFLES   98 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            22222222345555555544343333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=88.59  E-value=16  Score=34.27  Aligned_cols=52  Identities=15%  Similarity=0.183  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q 004019          717 DQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTL  768 (779)
Q Consensus       717 ~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l  768 (779)
                      ..+..+++++-.+.-.++..+.+...+...+...-..+..+...+..+...+
T Consensus        98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~  149 (155)
T 2efr_A           98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEV  149 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            3333334444444444444444433333333333333333333333333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=87.06  E-value=21  Score=33.85  Aligned_cols=45  Identities=7%  Similarity=0.182  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          686 MMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNS  730 (779)
Q Consensus       686 ~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~  730 (779)
                      .++.++..+..+++............-+.|...+..++++.....
T Consensus        94 elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           94 DLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            455566666666666777777777777777777777777665544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.19  E-value=4.4  Score=46.45  Aligned_cols=49  Identities=10%  Similarity=0.212  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 004019          708 IENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEE  756 (779)
Q Consensus       708 ~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~  756 (779)
                      +.........+...++++...+...++..+..+.++.+++..++.++.+
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~  576 (597)
T 3oja_B          528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ  576 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444444444444444444444444444444443333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.78  E-value=10  Score=43.25  Aligned_cols=63  Identities=13%  Similarity=0.078  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 004019          704 KAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRL  766 (779)
Q Consensus       704 ~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~  766 (779)
                      ....++........+.....+++..+....+.+++.+.+..+.+.+++.+.....++++++..
T Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~  579 (597)
T 3oja_B          517 RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA  579 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444444444444444444444444433

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=84.62  E-value=10  Score=35.41  Aligned_cols=68  Identities=13%  Similarity=0.213  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          673 ARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRL  740 (779)
Q Consensus       673 ~~q~~~~l~~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~  740 (779)
                      ++..|....+.+..++..+......++..-..+..+++.++.+..++-.++---...++.-+.+..+|
T Consensus        71 adrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I  138 (147)
T 2b9c_A           71 ADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV  138 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence            66667777777777777777777777777777777777777777777776655555555555554444

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=83.25  E-value=17  Score=30.17  Aligned_cols=29  Identities=10%  Similarity=0.012  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          691 IQQANASLNFFDMKAARIENQLRFCLDQA  719 (779)
Q Consensus       691 l~~~~~~ie~~~~~i~~~ee~lk~l~~~~  719 (779)
                      ++.+..+.+.....+..++.+++......
T Consensus         8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~   36 (81)
T 1ic2_A            8 MQMLKLDKENALDRAEQAEADKKAAEERS   36 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444443333333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=83.04  E-value=22  Score=30.60  Aligned_cols=41  Identities=20%  Similarity=0.221  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHH
Q 004019          592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYL  632 (779)
Q Consensus       592 kl~~~e~ei~~L~~~l~~~~r~~~~l~~~l~~~~~e~eaL~  632 (779)
                      .|..+..+=+.|...|....+....+-..|...+.+...|-
T Consensus        12 eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~   52 (96)
T 3q8t_A           12 ELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD   52 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            44444444445555555544433333333333333333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=82.58  E-value=19  Score=30.33  Aligned_cols=20  Identities=5%  Similarity=0.042  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 004019          625 NEEIEAYLSEIETIGQSYDD  644 (779)
Q Consensus       625 ~~e~eaL~~Eie~l~~A~e~  644 (779)
                      ..+-..+..||+.+..+.++
T Consensus        13 ~~e~~~l~~e~dn~~~~~ed   32 (86)
T 3swk_A           13 TNDKARVEVERDNLAEDIMR   32 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHH
Confidence            45555566666655444444

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=82.15  E-value=27  Score=32.52  Aligned_cols=88  Identities=16%  Similarity=0.161  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHH
Q 004019          682 MDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKV  761 (779)
Q Consensus       682 ~ek~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~~le~~r~~~~e~e~~l~elr~~le~~e~~l  761 (779)
                      ..+..++.++..+....+....+......++..+...+...++..-.....+..+...+.-+...++.|...-+.+.++-
T Consensus        52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE  131 (147)
T 2b9c_A           52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKN  131 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH
Confidence            34445555555555555555555555555555555555555555545555555555555555555555555555555555


Q ss_pred             HHHHHHHH
Q 004019          762 YKSRLTLM  769 (779)
Q Consensus       762 ~e~~~~l~  769 (779)
                      ..+..++.
T Consensus       132 ~~yee~I~  139 (147)
T 2b9c_A          132 YHLENEVA  139 (147)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            44444443

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=82.08  E-value=39  Score=37.30  Aligned_cols=26  Identities=27%  Similarity=0.250  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          585 AEAISQQRLAAAEAEIADMRQKLEAF  610 (779)
Q Consensus       585 ~~a~~~~kl~~~e~ei~~L~~~l~~~  610 (779)
                      .++++|.+|+..+.|+++.++...++
T Consensus         3 ~~a~yq~~la~yq~elarvqkana~a   28 (497)
T 3iox_A            3 NEADYQAKLTAYQTELARVQKANADA   28 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999888776

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=81.53  E-value=19  Score=31.52  Aligned_cols=26  Identities=19%  Similarity=0.147  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004019          580 KTAIEAEAISQQRLAAAEAEIADMRQ  605 (779)
Q Consensus       580 k~a~e~~a~~~~kl~~~e~ei~~L~~  605 (779)
                      ..|.++.+.-+..|.....+|+.++.
T Consensus        34 ~~AEeaL~~Kq~~idelk~ei~q~~~   59 (110)
T 2v4h_A           34 QQAEEALVAKQELIDKLKEEAEQHKI   59 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444434444444444444444444

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=81.46  E-value=25  Score=30.21  Aligned_cols=82  Identities=6%  Similarity=0.142  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHhHHH
Q 004019          684 KHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSA-------NLENTQKRLSDVRKSSVQVRGSLEE  756 (779)
Q Consensus       684 k~~le~el~~~~~~ie~~~~~i~~~ee~lk~l~~~~~~leeel~~~~~-------~le~~r~~~~e~e~~l~elr~~le~  756 (779)
                      +..+..++..+...-..+...+..++..-..+..++..++.+...+..       .+-.+++.+.++...+..+..++..
T Consensus         6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~   85 (96)
T 3q8t_A            6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRY   85 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555555555555555555555444       4555566666666666666666666


Q ss_pred             HHHHHHHHH
Q 004019          757 SQSKVYKSR  765 (779)
Q Consensus       757 ~e~~l~e~~  765 (779)
                      +..++..++
T Consensus        86 ~~~qLdkL~   94 (96)
T 3q8t_A           86 AQMQLDKLK   94 (96)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            666665544

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=81.02  E-value=36  Score=31.80  Aligned_cols=43  Identities=14%  Similarity=0.183  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004019          733 LENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIEL  775 (779)
Q Consensus       733 le~~r~~~~e~e~~l~elr~~le~~e~~l~e~~~~l~E~~~~l  775 (779)
                      +-..++....++.....|+.++...+..+..++..+.+++.-+
T Consensus       103 Va~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~  145 (154)
T 2ocy_A          103 VADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM  145 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555666666677777777777777777777766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00