Citrus Sinensis ID: 004024
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 778 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SY02 | 781 | Pentatricopeptide repeat- | yes | no | 0.988 | 0.984 | 0.671 | 0.0 | |
| Q56XI1 | 705 | Pentatricopeptide repeat- | no | no | 0.865 | 0.954 | 0.469 | 0.0 | |
| Q9FXB9 | 704 | Pentatricopeptide repeat- | no | no | 0.865 | 0.955 | 0.454 | 0.0 | |
| Q9S7F4 | 825 | Putative pentatricopeptid | no | no | 0.915 | 0.863 | 0.369 | 1e-158 | |
| Q9M4P3 | 656 | Pentatricopeptide repeat- | no | no | 0.758 | 0.899 | 0.456 | 1e-153 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.875 | 0.866 | 0.392 | 1e-149 | |
| Q9FRI5 | 790 | Pentatricopeptide repeat- | no | no | 0.892 | 0.878 | 0.371 | 1e-149 | |
| Q9FHF9 | 697 | Pentatricopeptide repeat- | no | no | 0.796 | 0.889 | 0.407 | 1e-146 | |
| O23169 | 691 | Pentatricopeptide repeat- | no | no | 0.723 | 0.814 | 0.430 | 1e-139 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.930 | 0.851 | 0.367 | 1e-139 |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 1127 bits (2915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/774 (67%), Positives = 645/774 (83%), Gaps = 5/774 (0%)
Query: 6 RLRQLHSSCILHQHTQSINRLQSPANTNPYPSKKTLKRHLNSKSRNKPK-PAGDWDIRQW 64
R +QLH + L+ + N AN + S K + KS+ KP GD DI++W
Sbjct: 12 RAQQLHYTS-LNGLKRRCNNAHGAAN---FHSLKRATQTQIQKSQTKPLLKCGDSDIKEW 67
Query: 65 NVAITTHMRNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLV 124
NVAI+++MR G C+ AL VF MPR SSVSYN MISGYL NG+ + AR++FD+MP+RDLV
Sbjct: 68 NVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLV 127
Query: 125 SWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKN 184
SWNVMI GYVRN++L AR LFE+MP+RDV SWNTMLSGYAQNG D AR +FDRM EKN
Sbjct: 128 SWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKN 187
Query: 185 EISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPV 244
++SWN LL+AYVQN ++EEACMLF+S+ NW +VSWN L+GGFVK+K++ +A+ FD M V
Sbjct: 188 DVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNV 247
Query: 245 RDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAM 304
RD VSWNT+ITGYAQ+ + EA++LF+E+PV+DVFTWTAMVSGY+QN V+EAR +FD M
Sbjct: 248 RDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM 307
Query: 305 PEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFD 364
PE+N VSWNAM+AGYVQ +RM+MA+ELF+ M C+NV++WNTMITGYAQ G+I+ A+NLFD
Sbjct: 308 PERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFD 367
Query: 365 RMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLEL 424
+MP+ D +SWAA+IAGY+QSG+S ++LRLF++M+R G RLNRS F+S LSTCA++ +LEL
Sbjct: 368 KMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALEL 427
Query: 425 GKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYAR 484
GKQLHG+LVK G+E GCFVGNALL+MYCKCGS+EEA F+E+ KD++SWNTMIAGY+R
Sbjct: 428 GKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSR 487
Query: 485 HGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSK 544
HGFG+ AL FESMK G+KPDD TMV +LSACSHTGLV+KG +YFY+M +DYGV+PNS+
Sbjct: 488 HGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQ 547
Query: 545 HYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEM 604
HY CMVDLLGRAG L++A NLMKNMPFEPDAA WG LLGA R++G TELAE AA+ IF M
Sbjct: 548 HYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAM 607
Query: 605 EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTL 664
EPEN+GMYVLLSNLYA+SGRWGDV K+R++MRD+GVKKV GYSW+E+QNK HTFSVGD
Sbjct: 608 EPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEF 667
Query: 665 HPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIP 724
HPEKD I+A+LEEL+ ++K+ G+V T +VLHDV EEEKE M+RYHSE+LAVAYGI+ +
Sbjct: 668 HPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVS 727
Query: 725 AGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778
+GRPIRV+KNLRVCEDCHNAIK++++I GRLIILRDNNRFHHF GSCSCGDYW
Sbjct: 728 SGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/675 (46%), Positives = 446/675 (66%), Gaps = 2/675 (0%)
Query: 106 GQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYA 165
G++ AR++FD + + SWN M++GY N AR LF+ MP R+++SWN ++SGY
Sbjct: 31 GKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYM 90
Query: 166 QNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGG 225
+NG D AR++FD M E+N +SW L+ YV NG+++ A LF VSW ++ G
Sbjct: 91 KNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIG 150
Query: 226 FVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMV 285
F++ R+ DA +++ +P +D ++ +MI G + + EA+ +F+E + V TWT MV
Sbjct: 151 FLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMV 210
Query: 286 SGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNT 345
+GY QN +VD+AR IFD MPEK VSW +M+ GYVQ R++ A ELFE M K V + N
Sbjct: 211 TGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNA 270
Query: 346 MITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLN 405
MI+G Q GEI AR +FD M + + SW +I + ++G+ ++L LFI M++ G R
Sbjct: 271 MISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPT 330
Query: 406 RSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFE 465
S+LS CA+LASL GKQ+H QLV+ F+ +V + L+ MY KCG + ++ F+
Sbjct: 331 FPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFD 390
Query: 466 EIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVG-IKPDDITMVGILSACSHTGLVE 524
KD+I WN++I+GYA HG G++AL +F M G KP+++T V LSACS+ G+VE
Sbjct: 391 RFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVE 450
Query: 525 KGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGA 584
+G + + SM +GV P + HY CMVD+LGRAGR +EA ++ +M EPDAA WG+LLGA
Sbjct: 451 EGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGA 510
Query: 585 CRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVT 644
CR + + ++AE A+ + E+EPEN+G Y+LLSN+YA+ GRW DV+++R M+ R V+K
Sbjct: 511 CRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSP 570
Query: 645 GYSWLEVQNKVHTFSVGD-TLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEK 703
G SW EV+NKVH F+ G HPE++ I L+EL+ L++ G+ LHDV EEEK
Sbjct: 571 GCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEK 630
Query: 704 EHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNR 763
+ L+YHSE+LAVAY +L + G PIRVMKNLRVC DCH AIK ISK+ R IILRD NR
Sbjct: 631 VNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANR 690
Query: 764 FHHFSGGSCSCGDYW 778
FHHF G CSC DYW
Sbjct: 691 FHHFRNGECSCKDYW 705
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/674 (45%), Positives = 433/674 (64%), Gaps = 1/674 (0%)
Query: 106 GQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYA 165
G+++ AR+ FD + + + SWN ++SGY N AR LF+ M +R+VVSWN ++SGY
Sbjct: 31 GKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYI 90
Query: 166 QNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGG 225
+N AR +F+ M E+N +SW ++ Y+Q G + EA LF VSW + GG
Sbjct: 91 KNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGG 150
Query: 226 FVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMV 285
+ R+ A+ ++D MPV+D V+ MI G + + EA+ +F+E ++V TWT M+
Sbjct: 151 LIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMI 210
Query: 286 SGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNT 345
+GY QN +VD AR +F+ MPEK VSW +M+ GY + R++ A E FE M K V + N
Sbjct: 211 TGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNA 270
Query: 346 MITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLN 405
MI G+ + GEI+ AR +FD M D +W +I Y + G+ ++L LF +M++ G R +
Sbjct: 271 MIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPS 330
Query: 406 RSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFE 465
S+LS CA LASL+ G+Q+H LV+ F+ +V + L+ MY KCG + +A F+
Sbjct: 331 FPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFD 390
Query: 466 EIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEK 525
KD+I WN++I+GYA HG G++AL +F M + G P+ +T++ IL+ACS+ G +E+
Sbjct: 391 RFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEE 450
Query: 526 GTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGAC 585
G E F SM + V P +HY+C VD+LGRAG++D+A L+++M +PDA WGALLGAC
Sbjct: 451 GLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGAC 510
Query: 586 RLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTG 645
+ + + +LAE AA+ +FE EP+NAG YVLLS++ A+ +WGDV+ VR MR V K G
Sbjct: 511 KTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPG 570
Query: 646 YSWLEVQNKVHTFSVGDTL-HPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKE 704
SW+EV KVH F+ G HPE+ I LE+ + L++ G+ VLHDV EEEK
Sbjct: 571 CSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKV 630
Query: 705 HMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRF 764
L HSE+LAVAYG+L +P G PIRVMKNLRVC DCH AIK ISK+ R IILRD NRF
Sbjct: 631 DSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRF 690
Query: 765 HHFSGGSCSCGDYW 778
HHF+ G CSC DYW
Sbjct: 691 HHFNNGECSCRDYW 704
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 559 bits (1440), Expect = e-158, Method: Compositional matrix adjust.
Identities = 302/818 (36%), Positives = 451/818 (55%), Gaps = 106/818 (12%)
Query: 52 KPKPAGDWDIRQWNVAITTHMRNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPA 111
+P PA D R+ + I ++ G F++ RS N ++ L GQ+ A
Sbjct: 23 QPSPATFLDTRRVDARI---IKTG--------FDTDTCRS----NFIVEDLLRRGQVSAA 67
Query: 112 RQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYAD 171
R+V+D+MP ++ VS N MISG+V+ +S+AR+LF+ MP R VV+W ++ YA+N + D
Sbjct: 68 RKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFD 127
Query: 172 AARRIFDRMLEK------NEISWNGLLA----AYVQN--GRIEEACMLFESKANWEVVSW 219
A ++F +M + +++ LL A QN G++ + N +
Sbjct: 128 EAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVS 187
Query: 220 NSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLF----EEAPV 275
N L+ + + +RL A +F+ +P +D V++NT+ITGY ++ E+ LF +
Sbjct: 188 NVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQ 247
Query: 276 KDVFTWTAMVSG-----------------------------------YVQNGKVDEARMI 300
FT++ ++ Y ++ +V E RM+
Sbjct: 248 PSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRML 307
Query: 301 FDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTC-----------------KNVASW 343
FD MPE + VS+N +I+ Y Q + + + F M C N++S
Sbjct: 308 FDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSL 367
Query: 344 ----------------------NTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGY 381
N+++ YA+ A +F +PQ +SW A+I+GY
Sbjct: 368 QMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGY 427
Query: 382 AQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGC 441
Q G L+LF +M+ R ++S F +VL A+ ASL LGKQLH +++ G
Sbjct: 428 VQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENV 487
Query: 442 FVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTV 501
F G+ L+ MY KCGS+++A FEE+ D++ +SWN +I+ +A +G G+ A+ F M
Sbjct: 488 FSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIES 547
Query: 502 GIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDE 561
G++PD ++++G+L+ACSH G VE+GTEYF +M+ YG+ P KHY CM+DLLGR GR E
Sbjct: 548 GLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAE 607
Query: 562 AQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEP-ENAGMYVLLSNLYA 620
A+ LM MPFEPD W ++L ACR++ LAE+AAE +F ME +A YV +SN+YA
Sbjct: 608 AEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYA 667
Query: 621 ASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEF 680
A+G W V V+ MR+RG+KKV YSW+EV +K+H FS D HP D I + EL
Sbjct: 668 AAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTA 727
Query: 681 KLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCED 740
+++++G+ T V+ DV E+ K L+YHSE+LAVA+ ++S P G PI VMKNLR C D
Sbjct: 728 EIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRD 787
Query: 741 CHNAIKHISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778
CH AIK ISKIV R I +RD +RFHHFS G CSCGDYW
Sbjct: 788 CHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 270/592 (45%), Positives = 381/592 (64%), Gaps = 2/592 (0%)
Query: 189 NGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQ-KRLGDAKWIFDRMPVRDE 247
N ++A V++G I+ A +F ++WNSL+ G K R+ +A +FD +P D
Sbjct: 65 NKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDT 124
Query: 248 VSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK 307
S+N M++ Y +N +AQ F+ P KD +W M++GY + G++++AR +F +M EK
Sbjct: 125 FSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEK 184
Query: 308 NTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMP 367
N VSWNAMI+GY++ ++ A F+ + V +W MITGY ++ ++ A +F M
Sbjct: 185 NEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMT 244
Query: 368 -QHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGK 426
+ ++W A+I+GY ++ ED L+LF M G R N S +S L C+ L++L+LG+
Sbjct: 245 VNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGR 304
Query: 427 QLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHG 486
Q+H + K +L+ MYCKCG + +A+ FE + KDV++WN MI+GYA+HG
Sbjct: 305 QIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHG 364
Query: 487 FGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHY 546
AL LF M I+PD IT V +L AC+H GLV G YF SM RDY V P HY
Sbjct: 365 NADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHY 424
Query: 547 TCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEP 606
TCMVDLLGRAG+L+EA L+++MPF P AA +G LLGACR++ ELAE AAE + ++
Sbjct: 425 TCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNS 484
Query: 607 ENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHP 666
+NA YV L+N+YA+ RW DV++VR +M++ V KV GYSW+E++NKVH F D +HP
Sbjct: 485 QNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHP 544
Query: 667 EKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIPAG 726
E D I+ L+ELE K+K G+ + LH+V EE+KE +L +HSEKLAVA+G + +P G
Sbjct: 545 ELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQG 604
Query: 727 RPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778
I+V KNLR+C DCH AIK IS+I R II+RD RFHHF GSCSCGDYW
Sbjct: 605 SQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 530 bits (1365), Expect = e-149, Method: Compositional matrix adjust.
Identities = 291/741 (39%), Positives = 419/741 (56%), Gaps = 60/741 (8%)
Query: 98 MISGYLLNGQLDP---------ARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEM 148
M S YL+N ++ AR++FD+MP R SWN ++S Y + + + F+
Sbjct: 46 MFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQ 105
Query: 149 MPKRDVVSWNTMLSGYAQNGYADAARRIFDRM----LEKNEISWNGLLAAYVQNGRIEEA 204
+P+RD VSW TM+ GY G A R+ M +E + + +LA+ +E
Sbjct: 106 LPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETG 165
Query: 205 ----CMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQN 260
+ + V NSL+ + K AK++FDRM VRD SWN MI + Q
Sbjct: 166 KKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQV 225
Query: 261 NYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAM-------PEKNTVS-- 311
+ A FE+ +D+ TW +M+SG+ Q G A IF M P++ T++
Sbjct: 226 GQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASV 285
Query: 312 -------------------------------WNAMIAGYVQTKRMDMARELFEAMTCKN- 339
NA+I+ Y + ++ AR L E K+
Sbjct: 286 LSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL 345
Query: 340 -VASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMK 398
+ + ++ GY + G++ A+N+F + D ++W A+I GY Q G +++ LF M
Sbjct: 346 KIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMV 405
Query: 399 RYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVE 458
G+R N ++LS ++LASL GKQ+HG VK G V NAL+ MY K G++
Sbjct: 406 GGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNIT 465
Query: 459 EAYHAFEEI-VDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSAC 517
A AF+ I ++D +SW +MI A+HG ++AL LFE+M G++PD IT VG+ SAC
Sbjct: 466 SASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSAC 525
Query: 518 SHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAAT 577
+H GLV +G +YF M +IP HY CMVDL GRAG L EAQ ++ MP EPD T
Sbjct: 526 THAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVT 585
Query: 578 WGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637
WG+LL ACR++ +L + AAE + +EPEN+G Y L+NLY+A G+W + +K+R M+D
Sbjct: 586 WGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKD 645
Query: 638 RGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHD 697
VKK G+SW+EV++KVH F V D HPEK+ IY ++++ ++K+ G+V T VLHD
Sbjct: 646 GRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHD 705
Query: 698 VGEEEKEHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLII 757
+ EE KE +LR+HSEKLA+A+G++S P +R+MKNLRVC DCH AIK ISK+VGR II
Sbjct: 706 LEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREII 765
Query: 758 LRDNNRFHHFSGGSCSCGDYW 778
+RD RFHHF G CSC DYW
Sbjct: 766 VRDTTRFHHFKDGFCSCRDYW 786
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 530 bits (1365), Expect = e-149, Method: Compositional matrix adjust.
Identities = 279/751 (37%), Positives = 434/751 (57%), Gaps = 57/751 (7%)
Query: 83 VFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAA 142
F PR + N +I Y + +L+ ARQ+FD++ + D ++ M+SGY + ++ A
Sbjct: 42 TFGFQPRAHIL--NRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLA 99
Query: 143 RNLFEMMP--KRDVVSWNTMLSGYAQNGYADAARRIFDRM----LEKNEISWNGLLAAYV 196
R +FE P RD V +N M++G++ N +A +F +M + + ++ +LA
Sbjct: 100 RGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLA 159
Query: 197 QNGRIEEACMLF-----ESKANWEVVSWNSLMGGFVK----QKRLGDAKWIFDRMPVRDE 247
E+ C+ F +S A + N+L+ + K L A+ +FD + +DE
Sbjct: 160 LVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDE 219
Query: 248 VSWNTMITGYAQNNYLAEAQRLFEEAPVK-DVFTWTAMVSGYVQNGKVDEA----RMIFD 302
SW TM+TGY +N Y + L E + + AM+SGYV G EA R +
Sbjct: 220 RSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVS 279
Query: 303 AMPEKNTVSW----------------------------------NAMIAGYVQTKRMDMA 328
+ E + ++ N++++ Y + + D A
Sbjct: 280 SGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEA 339
Query: 329 RELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSE 388
R +FE M K++ SWN +++GY SG I A+ +F M + + +SW +I+G A++G+ E
Sbjct: 340 RAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGE 399
Query: 389 DSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALL 448
+ L+LF MKR G F+ + +CA L + G+Q H QL+K+GF++ GNAL+
Sbjct: 400 EGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALI 459
Query: 449 VMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI 508
MY KCG VEEA F + D +SWN +IA +HG G +A+ ++E M GI+PD I
Sbjct: 460 TMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRI 519
Query: 509 TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKN 568
T++ +L+ACSH GLV++G +YF SM Y + P + HY ++DLL R+G+ +A++++++
Sbjct: 520 TLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIES 579
Query: 569 MPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628
+PF+P A W ALL CR++G EL AA+ +F + PE+ G Y+LLSN++AA+G+W +V
Sbjct: 580 LPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEV 639
Query: 629 SKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFV 688
++VR MRDRGVKK SW+E++ +VHTF V DT HPE + +Y YL++L ++++ G+V
Sbjct: 640 ARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYV 699
Query: 689 YSTKLVLHDV-GEEEKEHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKH 747
T VLHDV + KE ML HSEK+AVA+G++ +P G IR+ KNLR C DCHN +
Sbjct: 700 PDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRF 759
Query: 748 ISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778
+S +V R IILRD RFHHF G CSCG++W
Sbjct: 760 LSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 518 bits (1334), Expect = e-146, Method: Compositional matrix adjust.
Identities = 272/667 (40%), Positives = 393/667 (58%), Gaps = 47/667 (7%)
Query: 152 RDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESK 211
R+V+ N +LS D AR +F+++ + + ++ Y ++ R+ +A LF+
Sbjct: 38 REVLICNHLLSRRI-----DEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEM 92
Query: 212 ANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFE 271
+VVSWNS++ G V+ + A +FD MP R VSW M+ G ++ + +A+RLF
Sbjct: 93 PVRDVVSWNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFY 152
Query: 272 EAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMAREL 331
+ PVKD W +MV GY+Q GKVD+A +F MP KN +SW MI G Q +R A +L
Sbjct: 153 QMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDL 212
Query: 332 FEAM-----------------TCKNVASWN----------------------TMITGYAQ 352
F+ M C N +++ ++IT YA
Sbjct: 213 FKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYAN 272
Query: 353 SGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSV 412
I +R +FD W A+++GY+ + ED+L +F M R N+S F S
Sbjct: 273 CKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASG 332
Query: 413 LSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDV 472
L++C+ L +L+ GK++HG VK+G E FVGN+L+VMY G+V +A F +I K +
Sbjct: 333 LNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSI 392
Query: 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYS 532
+SWN++I G A+HG GK A ++F M + +PD+IT G+LSACSH G +EKG + FY
Sbjct: 393 VSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYY 452
Query: 533 MNRDYGVIPNS-KHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKT 591
M+ I +HYTCMVD+LGR G+L EA+ L++ M +P+ W ALL ACR++
Sbjct: 453 MSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDV 512
Query: 592 ELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEV 651
+ EKAA IF ++ +++ YVLLSN+YA++GRW +VSK+R+KM+ G+ K G SW+ +
Sbjct: 513 DRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVI 572
Query: 652 QNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHS 711
+ K H F GD P RIY LE L KLK+ G+ + LHDV +E+KE ML YHS
Sbjct: 573 RGKKHEFFSGD--QPHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHS 630
Query: 712 EKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGS 771
E+LA+A+G+++ G + VMKNLRVCEDCH IK IS +VGR I+LRD RFHHF G+
Sbjct: 631 ERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGT 690
Query: 772 CSCGDYW 778
CSCGDYW
Sbjct: 691 CSCGDYW 697
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 497 bits (1280), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/572 (43%), Positives = 357/572 (62%), Gaps = 9/572 (1%)
Query: 216 VVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV 275
+V WN L+ + K L DA+ +FD MP RD SWN M+ GYA+ L EA++LF+E
Sbjct: 120 IVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTE 179
Query: 276 KDVFTWTAMVSGYVQNGKVDEARMIFDAM-------PEKNTVSWNAMIAGYVQTKR--MD 326
KD ++WTAMV+GYV+ + +EA +++ M P TVS A V+ R +
Sbjct: 180 KDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKE 239
Query: 327 MARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGY 386
+ + A + W++++ Y + G I ARN+FD++ + D +SW ++I Y +S
Sbjct: 240 IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSR 299
Query: 387 SEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNA 446
+ LF E+ ER N F VL+ CA+L + ELGKQ+HG + +VGF+ F ++
Sbjct: 300 WREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSS 359
Query: 447 LLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD 506
L+ MY KCG++E A H + D++SW ++I G A++G +AL F+ + G KPD
Sbjct: 360 LVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPD 419
Query: 507 DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLM 566
+T V +LSAC+H GLVEKG E+FYS+ + + S HYTC+VDLL R+GR ++ ++++
Sbjct: 420 HVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVI 479
Query: 567 KNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWG 626
MP +P W ++LG C YG +LAE+AA+ +F++EPEN YV ++N+YAA+G+W
Sbjct: 480 SEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWE 539
Query: 627 DVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDG 686
+ K+R +M++ GV K G SW E++ K H F DT HP ++I +L EL K+K++G
Sbjct: 540 EEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEG 599
Query: 687 FVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIK 746
+V +T LVLHDV +E+KE L YHSEKLAVA+ ILS G I+V KNLR C DCH AIK
Sbjct: 600 YVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIK 659
Query: 747 HISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778
IS I R I +RD+ RFH F G CSCGDYW
Sbjct: 660 FISNITKRKITVRDSTRFHCFENGQCSCGDYW 691
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 494 bits (1273), Expect = e-139, Method: Compositional matrix adjust.
Identities = 281/765 (36%), Positives = 419/765 (54%), Gaps = 41/765 (5%)
Query: 55 PAGDWDIRQWNVAITTHMRNGCCDSALHVFNSM------PRRSSVSYNAMISGYLLNGQL 108
P D + WN I ++ NGC + L++F M P + + G + + +
Sbjct: 86 PPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRC 145
Query: 109 DPARQVFDQMPQ--RDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQ 166
+ + ++ N +++ Y R +SLS AR +F+ M DVVSWN+++ YA+
Sbjct: 146 GESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAK 205
Query: 167 NGYADAARRIFDRMLEK-----NEISWNGLLAAYVQNGR----IEEACMLFESKANWEVV 217
G A +F RM + + I+ +L G + C S+ +
Sbjct: 206 LGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMF 265
Query: 218 SWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFE---EAP 274
N L+ + K + +A +F M V+D VSWN M+ GY+Q +A RLFE E
Sbjct: 266 VGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEK 325
Query: 275 VK-DVFTWTAMVSGYVQNGKVDEA----RMIFDAMPEKNTVSWNAMIAGYVQTKRMDMAR 329
+K DV TW+A +SGY Q G EA R + + + N V+ ++++G + +
Sbjct: 326 IKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGK 385
Query: 330 EL------FEAMTCKNVAS-----WNTMITGYAQSGEITHARNLFDRMP--QHDCISWAA 376
E+ + KN N +I YA+ ++ AR +FD + + D ++W
Sbjct: 386 EIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTV 445
Query: 377 IIAGYAQSGYSEDSLRLFIEM--KRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVK 434
+I GY+Q G + +L L EM + R N + L CA+LA+L +GKQ+H ++
Sbjct: 446 MIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALR 505
Query: 435 VGFEA-GCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALM 493
A FV N L+ MY KCGS+ +A F+ ++ K+ ++W +++ GY HG+G++AL
Sbjct: 506 NQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALG 565
Query: 494 LFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLL 553
+F+ M+ +G K D +T++ +L ACSH+G++++G EYF M +GV P +HY C+VDLL
Sbjct: 566 IFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLL 625
Query: 554 GRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYV 613
GRAGRL+ A L++ MP EP W A L CR++GK EL E AAE I E+ + G Y
Sbjct: 626 GRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYT 685
Query: 614 LLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYA 673
LLSNLYA +GRW DV+++R MR +GVKK G SW+E TF VGD HP IY
Sbjct: 686 LLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQ 745
Query: 674 YLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIPAGRPIRVMK 733
L + ++K G+V T LHDV +EEK+ +L HSEKLA+AYGIL+ P G IR+ K
Sbjct: 746 VLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITK 805
Query: 734 NLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778
NLRVC DCH A ++S+I+ IILRD++RFHHF GSCSC YW
Sbjct: 806 NLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 778 | ||||||
| 359491499 | 766 | PREDICTED: pentatricopeptide repeat-cont | 0.976 | 0.992 | 0.739 | 0.0 | |
| 357521591 | 980 | Pentatricopeptide repeat-containing prot | 0.967 | 0.768 | 0.710 | 0.0 | |
| 92870988 | 766 | Tetratricopeptide-like helical [Medicago | 0.967 | 0.983 | 0.710 | 0.0 | |
| 356511263 | 763 | PREDICTED: pentatricopeptide repeat-cont | 0.956 | 0.975 | 0.716 | 0.0 | |
| 15235498 | 781 | pentatricopeptide repeat-containing prot | 0.988 | 0.984 | 0.671 | 0.0 | |
| 297809863 | 776 | pentatricopeptide repeat-containing prot | 0.988 | 0.990 | 0.668 | 0.0 | |
| 449497589 | 776 | PREDICTED: pentatricopeptide repeat-cont | 0.992 | 0.994 | 0.686 | 0.0 | |
| 449439555 | 776 | PREDICTED: pentatricopeptide repeat-cont | 0.992 | 0.994 | 0.685 | 0.0 | |
| 297734304 | 685 | unnamed protein product [Vitis vinifera] | 0.844 | 0.959 | 0.765 | 0.0 | |
| 356511265 | 750 | PREDICTED: pentatricopeptide repeat-cont | 0.964 | 1.0 | 0.649 | 0.0 |
| >gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1228 bits (3178), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/782 (73%), Positives = 670/782 (85%), Gaps = 22/782 (2%)
Query: 1 MRGNNRLRQLHSSCILHQHTQSINRLQSPANTNPYPSKKTLKRHLNSKSRNKPKP----A 56
MRG+NR RQLHS L LQ+ N PS +RN+PK A
Sbjct: 3 MRGSNRFRQLHSRSCLRS-------LQTTTTANRKPS-----------TRNQPKTTSSLA 44
Query: 57 GDWDIRQWNVAITTHMRNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFD 116
D DI +WN+AIT HMRNG CDSAL +FNSMPRRSS+S+NAMISG L N + ARQ+F+
Sbjct: 45 TDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFE 104
Query: 117 QMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRI 176
+MP RDLVSWNVMISG VR ++L AAR LF+ MP+RDVVSWN MLSGYAQNGY A+ I
Sbjct: 105 KMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEI 164
Query: 177 FDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAK 236
FD M KN ISWNG+LAAYVQNGRIE+A LFESKA+WE++SWN +MGG+VK+ RL DA+
Sbjct: 165 FDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDAR 224
Query: 237 WIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDE 296
IFDRMP RDEVSWNTMI+GYAQN L EAQRLFEE+PV+DVFTWTAMVSGYVQNG +DE
Sbjct: 225 GIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDE 284
Query: 297 ARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEI 356
AR +FD MPEKN+VSWNA+IAGYVQ KRMD ARELFEAM C+NV+SWNTMITGYAQ+G+I
Sbjct: 285 ARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDI 344
Query: 357 THARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTC 416
ARN FDRMPQ D ISWAAIIAGYAQSGY E++L LF+EMKR GERLNRS FTS LSTC
Sbjct: 345 AQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTC 404
Query: 417 ANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWN 476
A +A+LELGKQ+HG++VK G E+GC+VGNALLVMYCKCG++++AY FE I +K+V+SWN
Sbjct: 405 AEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWN 464
Query: 477 TMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRD 536
TMIAGYARHGFGK+ALMLFESMK GI PDD+TMVG+LSACSHTGLV+KGTEYFYSM +D
Sbjct: 465 TMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQD 524
Query: 537 YGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEK 596
YG+ NSKHYTCM+DLLGRAGRLD+AQNLMKNMPFEPDAATWGALLGA R++G TEL EK
Sbjct: 525 YGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEK 584
Query: 597 AAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVH 656
AA++IFEMEP+N+GMYVLLSNLYAASGRWGDV ++RL+MRDRGVKKV GYSW+EVQNK+H
Sbjct: 585 AAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIH 644
Query: 657 TFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAV 716
TF+VGD++HPE+DRIY +LEEL+ K+K++G+V STKLVLHDV EEEK HML+YHSEKLAV
Sbjct: 645 TFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAV 704
Query: 717 AYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGSCSCGD 776
A+GIL+IPAGRPIRV+KNLRVCEDCHNA+KHISKIVGRLIILRD++RFHHF+GG CSCGD
Sbjct: 705 AFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGD 764
Query: 777 YW 778
YW
Sbjct: 765 YW 766
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1178 bits (3048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/754 (71%), Positives = 651/754 (86%), Gaps = 1/754 (0%)
Query: 25 RLQSPANTNPYPSKKTLKRHLNSKSRNKPKPAGDWDIRQWNVAITTHMRNGCCDSALHVF 84
R++ N + + +R + + NKP+ D DI +WN AI+THMRNG CDSALHVF
Sbjct: 14 RVRRVCTINFGHTSTSTRRSESVTNNNKPR-VKDPDILKWNKAISTHMRNGHCDSALHVF 72
Query: 85 NSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARN 144
N+MPRRSSVSYNAMISGYL N + + AR +FDQMP+RDL SWNVM++GYVRN L AR
Sbjct: 73 NTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARR 132
Query: 145 LFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEA 204
LF++MP++DVVSWN++LSGYAQNGY D AR +FD M EKN ISWNGLLAAYV NGRIEEA
Sbjct: 133 LFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEA 192
Query: 205 CMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLA 264
C+LFESK++W+++SWN LMGGFV++K+LGDA+W+FD+MPVRD +SWNTMI+GYAQ L+
Sbjct: 193 CLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLS 252
Query: 265 EAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKR 324
+A+RLF+E+P +DVFTWTAMVSGYVQNG +DEA+ FD MPEKN VS+NAMIAGYVQTK+
Sbjct: 253 QARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKK 312
Query: 325 MDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQS 384
MD+ARELFE+M C+N++SWNTMITGY Q G+I AR FD MPQ DC+SWAAIIAGYAQS
Sbjct: 313 MDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQS 372
Query: 385 GYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVG 444
G+ E++L +F+E+K+ GE LNR+ F LSTCA++A+LELGKQ+HGQ VK+G+ GCFVG
Sbjct: 373 GHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVG 432
Query: 445 NALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIK 504
NALL MY KCGS++EA FE I +KDV+SWNTM+AGYARHGFG+ AL +FESMKT G+K
Sbjct: 433 NALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVK 492
Query: 505 PDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQN 564
PD+ITMVG+LSACSHTGL+++GTEYFYSM +DYGVIP SKHYTCM+DLLGRAGRL+EAQ+
Sbjct: 493 PDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQD 552
Query: 565 LMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGR 624
L++NMPF+P AA+WGALLGA R++G TEL EKAAE++F+MEP+N+GMYVLLSNLYAASGR
Sbjct: 553 LIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGR 612
Query: 625 WGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQ 684
W D K+R KMRD GV+KV GYSW+EVQNK+HTFSVGD HPEK+RIYAYLEEL+ K+++
Sbjct: 613 WVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMRE 672
Query: 685 DGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNA 744
+G+V TKLVLHDV EEEKEHML+YHSEKLAVA+GIL+IP GRPIRVMKNLRVCEDCH+A
Sbjct: 673 EGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSA 732
Query: 745 IKHISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778
IKHISKIVGRLIILRD++RFHHF+ G CSCGDYW
Sbjct: 733 IKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1177 bits (3044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/754 (71%), Positives = 651/754 (86%), Gaps = 1/754 (0%)
Query: 25 RLQSPANTNPYPSKKTLKRHLNSKSRNKPKPAGDWDIRQWNVAITTHMRNGCCDSALHVF 84
R++ N + + +R + + NKP+ D DI +WN AI+THMRNG CDSALHVF
Sbjct: 14 RVRRVCTINFGHTSTSTRRSESVTNNNKPR-VKDPDILKWNKAISTHMRNGHCDSALHVF 72
Query: 85 NSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARN 144
N+MPRRSSVSYNAMISGYL N + + AR +FDQMP+RDL SWNVM++GYVRN L AR
Sbjct: 73 NTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARR 132
Query: 145 LFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEA 204
LF++MP++DVVSWN++LSGYAQNGY D AR +FD M EKN ISWNGLLAAYV NGRIEEA
Sbjct: 133 LFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEA 192
Query: 205 CMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLA 264
C+LFESK++W+++SWN LMGGFV++K+LGDA+W+FD+MPVRD +SWNTMI+GYAQ L+
Sbjct: 193 CLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLS 252
Query: 265 EAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKR 324
+A+RLF+E+P +DVFTWTAMVSGYVQNG +DEA+ FD MPEKN VS+NAMIAGYVQTK+
Sbjct: 253 QARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKK 312
Query: 325 MDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQS 384
MD+ARELFE+M C+N++SWNTMITGY Q G+I AR FD MPQ DC+SWAAIIAGYAQS
Sbjct: 313 MDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQS 372
Query: 385 GYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVG 444
G+ E++L +F+E+K+ GE LNR+ F LSTCA++A+LELGKQ+HGQ VK+G+ GCFVG
Sbjct: 373 GHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVG 432
Query: 445 NALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIK 504
NALL MY KCGS++EA FE I +KDV+SWNTM+AGYARHGFG+ AL +FESMKT G+K
Sbjct: 433 NALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVK 492
Query: 505 PDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQN 564
PD+ITMVG+LSACSHTGL+++GTEYFYSM +DYGVIP SKHYTCM+DLLGRAGRL+EAQ+
Sbjct: 493 PDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQD 552
Query: 565 LMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGR 624
L++NMPF+P AA+WGALLGA R++G TEL EKAAE++F+MEP+N+GMYVLLSNLYAASGR
Sbjct: 553 LIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGR 612
Query: 625 WGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQ 684
W D K+R KMRD GV+KV GYSW+EVQNK+HTFSVGD HPEK+RIYAYLEEL+ K+++
Sbjct: 613 WVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMRE 672
Query: 685 DGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNA 744
+G+V TKLVLHDV EEEKEHML+YHSEKLAVA+GIL+IP GRPIRVMKNLRVCEDCH+A
Sbjct: 673 EGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSA 732
Query: 745 IKHISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778
IKHISKIVGRLIILRD++RFHHF+ G CSCGDYW
Sbjct: 733 IKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1152 bits (2981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/747 (71%), Positives = 639/747 (85%), Gaps = 3/747 (0%)
Query: 32 TNPYPSKKTLKRHLNSKSRNKPKPAGDWDIRQWNVAITTHMRNGCCDSALHVFNSMPRRS 91
TN Y K +R NS S + K D DI WN AI++HMRNG CDSAL VFNSMPRRS
Sbjct: 20 TNNYYRSK--RRSTNSYSPSSVK-FKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRS 76
Query: 92 SVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPK 151
SVSYNAMISGYL N + AR +FD+MP+RDL SWNVM++GYVRN+ L A LF++MPK
Sbjct: 77 SVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPK 136
Query: 152 RDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESK 211
+DVVSWN MLSGYAQNG+ D AR +F++M +N ISWNGLLAAYV NGR++EA LFES+
Sbjct: 137 KDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQ 196
Query: 212 ANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFE 271
+NWE++SWN LMGG+VK+ LGDA+ +FDRMPVRD +SWNTMI+GYAQ L++A+RLF
Sbjct: 197 SNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFN 256
Query: 272 EAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMAREL 331
E+P++DVFTWTAMVSGYVQNG VDEAR FD MP KN +S+NAM+AGYVQ K+M +A EL
Sbjct: 257 ESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGEL 316
Query: 332 FEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSL 391
FEAM C+N++SWNTMITGY Q+G I AR LFD MPQ DC+SWAAII+GYAQ+G+ E++L
Sbjct: 317 FEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEAL 376
Query: 392 RLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMY 451
+F+EMKR GE NRS F+ LSTCA++A+LELGKQ+HGQ+VK GFE GCFVGNALL MY
Sbjct: 377 NMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMY 436
Query: 452 CKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMV 511
KCGS +EA FE I +KDV+SWNTMIAGYARHGFG+ AL+LFESMK G+KPD+ITMV
Sbjct: 437 FKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMV 496
Query: 512 GILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPF 571
G+LSACSH+GL+++GTEYFYSM+RDY V P SKHYTCM+DLLGRAGRL+EA+NLM+NMPF
Sbjct: 497 GVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPF 556
Query: 572 EPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKV 631
+P AA+WGALLGA R++G TEL EKAAE++F+MEP+N+GMYVLLSNLYAASGRW DV K+
Sbjct: 557 DPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKM 616
Query: 632 RLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYST 691
R KMR+ GV+KVTGYSW+EVQNK+HTFSVGD HPEKDRIYA+LEEL+ K++++G+V ST
Sbjct: 617 RSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSST 676
Query: 692 KLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKI 751
KLVLHDV EEEKEHML+YHSEKLAVA+GIL+IPAGRPIRVMKNLRVC+DCHNAIKHISKI
Sbjct: 677 KLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKI 736
Query: 752 VGRLIILRDNNRFHHFSGGSCSCGDYW 778
VGRLIILRD++RFHHFS G CSCGDYW
Sbjct: 737 VGRLIILRDSHRFHHFSEGICSCGDYW 763
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana] gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana] gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1127 bits (2915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/774 (67%), Positives = 645/774 (83%), Gaps = 5/774 (0%)
Query: 6 RLRQLHSSCILHQHTQSINRLQSPANTNPYPSKKTLKRHLNSKSRNKPK-PAGDWDIRQW 64
R +QLH + L+ + N AN + S K + KS+ KP GD DI++W
Sbjct: 12 RAQQLHYTS-LNGLKRRCNNAHGAAN---FHSLKRATQTQIQKSQTKPLLKCGDSDIKEW 67
Query: 65 NVAITTHMRNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLV 124
NVAI+++MR G C+ AL VF MPR SSVSYN MISGYL NG+ + AR++FD+MP+RDLV
Sbjct: 68 NVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLV 127
Query: 125 SWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKN 184
SWNVMI GYVRN++L AR LFE+MP+RDV SWNTMLSGYAQNG D AR +FDRM EKN
Sbjct: 128 SWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKN 187
Query: 185 EISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPV 244
++SWN LL+AYVQN ++EEACMLF+S+ NW +VSWN L+GGFVK+K++ +A+ FD M V
Sbjct: 188 DVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNV 247
Query: 245 RDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAM 304
RD VSWNT+ITGYAQ+ + EA++LF+E+PV+DVFTWTAMVSGY+QN V+EAR +FD M
Sbjct: 248 RDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM 307
Query: 305 PEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFD 364
PE+N VSWNAM+AGYVQ +RM+MA+ELF+ M C+NV++WNTMITGYAQ G+I+ A+NLFD
Sbjct: 308 PERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFD 367
Query: 365 RMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLEL 424
+MP+ D +SWAA+IAGY+QSG+S ++LRLF++M+R G RLNRS F+S LSTCA++ +LEL
Sbjct: 368 KMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALEL 427
Query: 425 GKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYAR 484
GKQLHG+LVK G+E GCFVGNALL+MYCKCGS+EEA F+E+ KD++SWNTMIAGY+R
Sbjct: 428 GKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSR 487
Query: 485 HGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSK 544
HGFG+ AL FESMK G+KPDD TMV +LSACSHTGLV+KG +YFY+M +DYGV+PNS+
Sbjct: 488 HGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQ 547
Query: 545 HYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEM 604
HY CMVDLLGRAG L++A NLMKNMPFEPDAA WG LLGA R++G TELAE AA+ IF M
Sbjct: 548 HYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAM 607
Query: 605 EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTL 664
EPEN+GMYVLLSNLYA+SGRWGDV K+R++MRD+GVKKV GYSW+E+QNK HTFSVGD
Sbjct: 608 EPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEF 667
Query: 665 HPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIP 724
HPEKD I+A+LEEL+ ++K+ G+V T +VLHDV EEEKE M+RYHSE+LAVAYGI+ +
Sbjct: 668 HPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVS 727
Query: 725 AGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778
+GRPIRV+KNLRVCEDCHNAIK++++I GRLIILRDNNRFHHF GSCSCGDYW
Sbjct: 728 SGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1127 bits (2914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/776 (66%), Positives = 646/776 (83%), Gaps = 7/776 (0%)
Query: 9 QLHSSCILHQHTQSINRLQSPAN-----TNPYPSKKTLKRHLNSKSRNKPKP-AGDWDIR 62
Q++ L + S+N L+ N +N + SK + + + KS+ KP P +GD DI+
Sbjct: 2 QIYKFGALSRRHTSLNGLKRRYNNANSASNFHSSKSSTQTQIQ-KSQTKPLPKSGDSDIK 60
Query: 63 QWNVAITTHMRNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRD 122
+WNVAI+++MR G C AL VF MPR SSVSYNAMISGYL NG+ + AR +FD+MP+RD
Sbjct: 61 EWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERD 120
Query: 123 LVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLE 182
LVSWNVMI GYVRN++L AR LFE MP+RDV SWNT+LSGYAQNG D ARR+FDRM E
Sbjct: 121 LVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPE 180
Query: 183 KNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRM 242
KN++SWN LL+AYVQN ++EEAC+LF S+ NW +VSWN L+GGFVK+K++ +A+ FD M
Sbjct: 181 KNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM 240
Query: 243 PVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFD 302
VRD VSWNT+ITGYAQN + EA++LF+E+PV DVFTWTAMVSGY+QN V+EAR +FD
Sbjct: 241 KVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFD 300
Query: 303 AMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNL 362
MPE+N VSWNAM+AGYVQ +R++MA+ELF+ M C+NV++WNTMITGYAQ G+I+ A+NL
Sbjct: 301 RMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNL 360
Query: 363 FDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASL 422
FD+MP+ D +SWAA+IAGY+QSG+S ++LRLF+ M+R G RLNRS F+S LSTCA++ +L
Sbjct: 361 FDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVAL 420
Query: 423 ELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGY 482
ELGKQLHG+LVK G+E GCFVGNALL+MYCKCGS+EEA F+E+ KD++SWNTMIAGY
Sbjct: 421 ELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGY 480
Query: 483 ARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN 542
+RHGFG++AL FESMK G+KPDD TMV +LSACSHTGLV+KG +YF++M +DYGV PN
Sbjct: 481 SRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPN 540
Query: 543 SKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIF 602
S+HY CMVDLLGRAG L+EA NLMKNMPFEPDAA WG LLGA R++G TELAE AA+ IF
Sbjct: 541 SQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIF 600
Query: 603 EMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGD 662
MEPEN+GMYVLLSNLYA+SGRWGDV K+R++MRD+GVKKV GYSW+E+QNK HTFSVGD
Sbjct: 601 AMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGD 660
Query: 663 TLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILS 722
HPEKD I+A+LE+L+ ++K+ G+V T +VLHDV EEEKE M+RYHSE+LAVAYGI+
Sbjct: 661 EFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMR 720
Query: 723 IPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778
+ +GRPIRV+KNLRVCEDCHNAIK+++K+ GRLIILRDNNRFHHF GSCSCGDYW
Sbjct: 721 VSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1126 bits (2913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/778 (68%), Positives = 641/778 (82%), Gaps = 6/778 (0%)
Query: 2 RGNNRLRQLHSSCILHQHTQSI-NRLQSPANTNPYPSKKTLKRHLNSKSRNKPKPAGDWD 60
RGN R S T+SI N+L++ + ++P T K +S+N D D
Sbjct: 4 RGNCRFSLFIGSSSRSIQTESITNKLRASSTSSPSKKTWTQKL----ESKNSDSTIVDSD 59
Query: 61 IRQWNVAITTHMRNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQ 120
I +WN I+ +MR G C+SAL VFN M RRS+V+YNAMISGYL N + D AR+VF++MP
Sbjct: 60 IVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPD 119
Query: 121 RDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRM 180
RDL+SWNVM+SGYV+N +LSAAR LF MP++DVVSWN MLSG+AQNG+ + AR+IFD+M
Sbjct: 120 RDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM 179
Query: 181 LEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFD 240
L KNEISWNGLL+AYVQNGRIE+A LF+SK +WE+VSWN LMGG+V++KRL DA+ +FD
Sbjct: 180 LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFD 239
Query: 241 RMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMI 300
RMPVRD++SWN MITGYAQN L+EA+RLFEE P++DVF WTAMVSG+VQNG +DEA I
Sbjct: 240 RMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRI 299
Query: 301 FDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHAR 360
F+ MPEKN VSWNAMIAGYVQ+++++ ARELF+ M +N +SWNTM+TGYAQ G I A+
Sbjct: 300 FEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAK 359
Query: 361 NLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLA 420
LFD MPQ DCISWAA+I+GYAQSG SE++L LFI+MKR G LNRS LS+CA +A
Sbjct: 360 ILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIA 419
Query: 421 SLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIA 480
+LELGKQLHG+LVK GF+ G GNALL MY KCGS+EEA+ FE+I +KD++SWNTMIA
Sbjct: 420 ALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIA 479
Query: 481 GYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVI 540
GYARHGFGK+AL LFESMK IKPDD+T+VG+LSACSHTGLV+KG EYF SM ++YG+
Sbjct: 480 GYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGIT 538
Query: 541 PNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEV 600
N+KHYTCM+DLLGRAGRLDEA NLMK+MPF PDAATWGALLGA R++G TEL EKAAE
Sbjct: 539 ANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEK 598
Query: 601 IFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSV 660
+FEMEP+N+GMYVLLSNLYAASGRW +V ++R KMRD+GVKKV GYSW+E+QNK H F+V
Sbjct: 599 VFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTV 658
Query: 661 GDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGI 720
GD HPE +RIYAYLEEL+ +LK+DGFV STKLVLHDV EEEKEHML+YHSEKLAVA+GI
Sbjct: 659 GDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGI 718
Query: 721 LSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778
LSIP GRPIRV+KNLRVCEDCHNAIKHISKI R II+RD+NRFHHFS GSCSCGDYW
Sbjct: 719 LSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1125 bits (2909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/778 (68%), Positives = 640/778 (82%), Gaps = 6/778 (0%)
Query: 2 RGNNRLRQLHSSCILHQHTQSI-NRLQSPANTNPYPSKKTLKRHLNSKSRNKPKPAGDWD 60
RGN R S T+SI N+L++ + ++P T K +S+N D D
Sbjct: 4 RGNCRFSLFIGSSSRSIQTESITNKLRASSTSSPSKKTWTQKL----ESKNSDSTIVDSD 59
Query: 61 IRQWNVAITTHMRNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQ 120
I +WN I+ +MR G C+SAL VFN M RRS+V+YNAMISGYL N + D AR+VF++MP
Sbjct: 60 IVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPD 119
Query: 121 RDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRM 180
RDL+SWNVM+SGYV+N +LSAAR LF MP++DVVSWN MLSG+AQNG+ + AR+IFD+M
Sbjct: 120 RDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM 179
Query: 181 LEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFD 240
L KNEISWNGLL+AYVQNGRIE+A LF+SK +WE+VSWN LMGG+V++KRL DA+ +FD
Sbjct: 180 LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFD 239
Query: 241 RMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMI 300
RMPVRD++SWN MITGYAQN L+EA+RLFEE P++DVF WTAMVSG+VQNG +DEA I
Sbjct: 240 RMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRI 299
Query: 301 FDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHAR 360
F+ MPEKN VSWNAMIAGYVQ+++++ ARELF+ M +N +SWNTM+TGYAQ G I A+
Sbjct: 300 FEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAK 359
Query: 361 NLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLA 420
LFD MPQ DCISWAA+I+GYAQSG SE++L LFI+MKR G LNRS LS+CA +A
Sbjct: 360 ILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIA 419
Query: 421 SLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIA 480
+LELGKQLHG+LVK GF+ G GNALL MY KCGS+EEA+ FE+I +KD++SWNTMIA
Sbjct: 420 ALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIA 479
Query: 481 GYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVI 540
GYARHGFGK+AL LFESMK IKPDD+T+VG+LSACSHTG V+KG EYF SM ++YG+
Sbjct: 480 GYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGIT 538
Query: 541 PNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEV 600
N+KHYTCM+DLLGRAGRLDEA NLMK+MPF PDAATWGALLGA R++G TEL EKAAE
Sbjct: 539 ANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEK 598
Query: 601 IFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSV 660
+FEMEP+N+GMYVLLSNLYAASGRW +V ++R KMRD+GVKKV GYSW+E+QNK H F+V
Sbjct: 599 VFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTV 658
Query: 661 GDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGI 720
GD HPE +RIYAYLEEL+ +LK+DGFV STKLVLHDV EEEKEHML+YHSEKLAVA+GI
Sbjct: 659 GDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGI 718
Query: 721 LSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778
LSIP GRPIRV+KNLRVCEDCHNAIKHISKI R II+RD+NRFHHFS GSCSCGDYW
Sbjct: 719 LSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1094 bits (2830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/664 (76%), Positives = 589/664 (88%), Gaps = 7/664 (1%)
Query: 115 FDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAAR 174
FD + + DL G VR ++L AAR LF+ MP+RDVVSWN MLSGYAQNGY A+
Sbjct: 29 FDFLERHDL-------RGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAK 81
Query: 175 RIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGD 234
IFD M KN ISWNG+LAAYVQNGRIE+A LFESKA+WE++SWN +MGG+VK+ RL D
Sbjct: 82 EIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVD 141
Query: 235 AKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKV 294
A+ IFDRMP RDEVSWNTMI+GYAQN L EAQRLFEE+PV+DVFTWTAMVSGYVQNG +
Sbjct: 142 ARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGML 201
Query: 295 DEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSG 354
DEAR +FD MPEKN+VSWNA+IAGYVQ KRMD ARELFEAM C+NV+SWNTMITGYAQ+G
Sbjct: 202 DEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNG 261
Query: 355 EITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLS 414
+I ARN FDRMPQ D ISWAAIIAGYAQSGY E++L LF+EMKR GERLNRS FTS LS
Sbjct: 262 DIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLS 321
Query: 415 TCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVIS 474
TCA +A+LELGKQ+HG++VK G E+GC+VGNALLVMYCKCG++++AY FE I +K+V+S
Sbjct: 322 TCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVS 381
Query: 475 WNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMN 534
WNTMIAGYARHGFGK+ALMLFESMK GI PDD+TMVG+LSACSHTGLV+KGTEYFYSM
Sbjct: 382 WNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMT 441
Query: 535 RDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELA 594
+DYG+ NSKHYTCM+DLLGRAGRLD+AQNLMKNMPFEPDAATWGALLGA R++G TEL
Sbjct: 442 QDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELG 501
Query: 595 EKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNK 654
EKAA++IFEMEP+N+GMYVLLSNLYAASGRWGDV ++RL+MRDRGVKKV GYSW+EVQNK
Sbjct: 502 EKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNK 561
Query: 655 VHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKL 714
+HTF+VGD++HPE+DRIY +LEEL+ K+K++G+V STKLVLHDV EEEK HML+YHSEKL
Sbjct: 562 IHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKL 621
Query: 715 AVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGSCSC 774
AVA+GIL+IPAGRPIRV+KNLRVCEDCHNA+KHISKIVGRLIILRD++RFHHF+GG CSC
Sbjct: 622 AVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSC 681
Query: 775 GDYW 778
GDYW
Sbjct: 682 GDYW 685
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1086 bits (2808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/778 (64%), Positives = 622/778 (79%), Gaps = 28/778 (3%)
Query: 1 MRGNNRLRQLHSSCILHQHTQSINRLQSPANTNPYPSKKTLKRHLNSKSRNKPKPAGDWD 60
MRG LRQLHSS H Q P +P+ K T
Sbjct: 1 MRGKFNLRQLHSSIF---HVQRPTNYPKPHFEDPHTVKCT-------------------- 37
Query: 61 IRQWNVAITTHMRNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQ 120
AI+THMRNG CD AL VF++MP R+SVSYNAMISGYL N + AR +FD+MP
Sbjct: 38 -----KAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPH 92
Query: 121 RDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRM 180
+DL SWN+M++GY RN+ L AR LF+ MP++DVVSWN MLSGY ++G+ D AR +FDRM
Sbjct: 93 KDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRM 152
Query: 181 LEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFD 240
KN ISWNGLLAAYV++GR+EEA LFESK++WE++S N LMGG+VK+ LGDA+ +FD
Sbjct: 153 PHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFD 212
Query: 241 RMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMI 300
++PVRD +SWNTMI+GYAQ+ L++A+RLFEE+PV+DVFTWTAMV YVQ+G +DEAR +
Sbjct: 213 QIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRV 272
Query: 301 FDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHAR 360
FD MP+K +S+N MIAGY Q KRMDM RELFE M N+ SWN MI+GY Q+G++ AR
Sbjct: 273 FDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQAR 332
Query: 361 NLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLA 420
NLFD MPQ D +SWAAIIAGYAQ+G E+++ + +EMKR GE LNRS F LS CA++A
Sbjct: 333 NLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIA 392
Query: 421 SLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIA 480
+LELGKQ+HGQ+V+ G+E GC VGNAL+ MYCKCG ++EAY F+ + KD++SWNTM+A
Sbjct: 393 ALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLA 452
Query: 481 GYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVI 540
GYARHGFG+ AL +FESM T G+KPD+ITMVG+LSACSHTGL ++GTEYF+SMN+DYG+
Sbjct: 453 GYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGIT 512
Query: 541 PNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEV 600
PNSKHY CM+DLLGRAG L+EAQNL++NMPFEPDAATWGALLGA R++G EL E+AAE+
Sbjct: 513 PNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEM 572
Query: 601 IFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSV 660
+F+MEP N+GMYVLLSNLYAASGRW DVSK+RLKMR GV+K GYSW+EVQNK+HTF+V
Sbjct: 573 VFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTV 632
Query: 661 GDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGI 720
GD HPEK RIYA+LEEL+ K+K +G+V STKLVLHDV EEEK+HML+YHSEKLAVA+GI
Sbjct: 633 GDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLKYHSEKLAVAFGI 692
Query: 721 LSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778
L++P+G+PIRVMKNLRVCEDCHNAIKHISKIVGRLII+RD++R+HHFS G CSC DYW
Sbjct: 693 LTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSCRDYW 750
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 778 | ||||||
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.992 | 0.988 | 0.670 | 8e-298 | |
| TAIR|locus:2012295 | 705 | AT1G09410 [Arabidopsis thalian | 0.865 | 0.954 | 0.469 | 8.9e-173 | |
| TAIR|locus:2027554 | 704 | AT1G56690 [Arabidopsis thalian | 0.865 | 0.955 | 0.454 | 2.3e-165 | |
| TAIR|locus:2151501 | 697 | AT5G46460 [Arabidopsis thalian | 0.832 | 0.929 | 0.396 | 1e-132 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.894 | 0.936 | 0.357 | 3.9e-131 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.889 | 0.880 | 0.382 | 9.3e-130 | |
| TAIR|locus:2115130 | 691 | AT4G37170 "AT4G37170" [Arabido | 0.723 | 0.814 | 0.426 | 3.2e-129 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.714 | 0.750 | 0.431 | 2e-127 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.678 | 0.530 | 0.420 | 3.8e-127 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.939 | 0.888 | 0.363 | 1.1e-126 |
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2859 (1011.5 bits), Expect = 8.0e-298, P = 8.0e-298
Identities = 523/780 (67%), Positives = 649/780 (83%)
Query: 5 NRLRQLHSSCILHQHTQSINRLQSPANTNPYPSKK--TLKRHLNS---KSRNKPK-PAGD 58
N+ R L S H S+N L+ N N + + +LKR + KS+ KP GD
Sbjct: 4 NKFRAL-SRRAQQLHYTSLNGLKRRCN-NAHGAANFHSLKRATQTQIQKSQTKPLLKCGD 61
Query: 59 WDIRQWNVAITTHMRNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQM 118
DI++WNVAI+++MR G C+ AL VF MPR SSVSYN MISGYL NG+ + AR++FD+M
Sbjct: 62 SDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM 121
Query: 119 PQRDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFD 178
P+RDLVSWNVMI GYVRN++L AR LFE+MP+RDV SWNTMLSGYAQNG D AR +FD
Sbjct: 122 PERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFD 181
Query: 179 RMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWI 238
RM EKN++SWN LL+AYVQN ++EEACMLF+S+ NW +VSWN L+GGFVK+K++ +A+
Sbjct: 182 RMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQF 241
Query: 239 FDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEAR 298
FD M VRD VSWNT+ITGYAQ+ + EA++LF+E+PV+DVFTWTAMVSGY+QN V+EAR
Sbjct: 242 FDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEAR 301
Query: 299 MIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITH 358
+FD MPE+N VSWNAM+AGYVQ +RM+MA+ELF+ M C+NV++WNTMITGYAQ G+I+
Sbjct: 302 ELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISE 361
Query: 359 ARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCAN 418
A+NLFD+MP+ D +SWAA+IAGY+QSG+S ++LRLF++M+R G RLNRS F+S LSTCA+
Sbjct: 362 AKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCAD 421
Query: 419 LASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTM 478
+ +LELGKQLHG+LVK G+E GCFVGNALL+MYCKCGS+EEA F+E+ KD++SWNTM
Sbjct: 422 VVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTM 481
Query: 479 IAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYG 538
IAGY+RHGFG+ AL FESMK G+KPDD TMV +LSACSHTGLV+KG +YFY+M +DYG
Sbjct: 482 IAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYG 541
Query: 539 VIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAA 598
V+PNS+HY CMVDLLGRAG L++A NLMKNMPFEPDAA WG LLGA R++G TELAE AA
Sbjct: 542 VMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAA 601
Query: 599 EVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTF 658
+ IF MEPEN+GMYVLLSNLYA+SGRWGDV K+R++MRD+GVKKV GYSW+E+QNK HTF
Sbjct: 602 DKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTF 661
Query: 659 SVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAY 718
SVGD HPEKD I+A+LEEL+ ++K+ G+V T +VLHDV EEEKE M+RYHSE+LAVAY
Sbjct: 662 SVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAY 721
Query: 719 GILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778
GI+ + +GRPIRV+KNLRVCEDCHNAIK++++I GRLIILRDNNRFHHF GSCSCGDYW
Sbjct: 722 GIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
|
| TAIR|locus:2012295 AT1G09410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1679 (596.1 bits), Expect = 8.9e-173, P = 8.9e-173
Identities = 317/675 (46%), Positives = 446/675 (66%)
Query: 106 GQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYA 165
G++ AR++FD + + SWN M++GY N AR LF+ MP R+++SWN ++SGY
Sbjct: 31 GKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYM 90
Query: 166 QNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGG 225
+NG D AR++FD M E+N +SW L+ YV NG+++ A LF VSW ++ G
Sbjct: 91 KNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIG 150
Query: 226 FVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMV 285
F++ R+ DA +++ +P +D ++ +MI G + + EA+ +F+E + V TWT MV
Sbjct: 151 FLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMV 210
Query: 286 SGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNT 345
+GY QN +VD+AR IFD MPEK VSW +M+ GYVQ R++ A ELFE M K V + N
Sbjct: 211 TGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNA 270
Query: 346 MITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLN 405
MI+G Q GEI AR +FD M + + SW +I + ++G+ ++L LFI M++ G R
Sbjct: 271 MISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPT 330
Query: 406 RSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFE 465
S+LS CA+LASL GKQ+H QLV+ F+ +V + L+ MY KCG + ++ F+
Sbjct: 331 FPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFD 390
Query: 466 EIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVG-IKPDDITMVGILSACSHTGLVE 524
KD+I WN++I+GYA HG G++AL +F M G KP+++T V LSACS+ G+VE
Sbjct: 391 RFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVE 450
Query: 525 KGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGA 584
+G + + SM +GV P + HY CMVD+LGRAGR +EA ++ +M EPDAA WG+LLGA
Sbjct: 451 EGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGA 510
Query: 585 CRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVT 644
CR + + ++AE A+ + E+EPEN+G Y+LLSN+YA+ GRW DV+++R M+ R V+K
Sbjct: 511 CRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSP 570
Query: 645 GYSWLEVQNKVHTFSVGD-TLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEK 703
G SW EV+NKVH F+ G HPE++ I L+EL+ L++ G+ LHDV EEEK
Sbjct: 571 GCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEK 630
Query: 704 EHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNR 763
+ L+YHSE+LAVAY +L + G PIRVMKNLRVC DCH AIK ISK+ R IILRD NR
Sbjct: 631 VNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANR 690
Query: 764 FHHFSGGSCSCGDYW 778
FHHF G CSC DYW
Sbjct: 691 FHHFRNGECSCKDYW 705
|
|
| TAIR|locus:2027554 AT1G56690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1609 (571.5 bits), Expect = 2.3e-165, P = 2.3e-165
Identities = 306/674 (45%), Positives = 433/674 (64%)
Query: 106 GQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYA 165
G+++ AR+ FD + + + SWN ++SGY N AR LF+ M +R+VVSWN ++SGY
Sbjct: 31 GKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYI 90
Query: 166 QNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGG 225
+N AR +F+ M E+N +SW ++ Y+Q G + EA LF VSW + GG
Sbjct: 91 KNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGG 150
Query: 226 FVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMV 285
+ R+ A+ ++D MPV+D V+ MI G + + EA+ +F+E ++V TWT M+
Sbjct: 151 LIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMI 210
Query: 286 SGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNT 345
+GY QN +VD AR +F+ MPEK VSW +M+ GY + R++ A E FE M K V + N
Sbjct: 211 TGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNA 270
Query: 346 MITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLN 405
MI G+ + GEI+ AR +FD M D +W +I Y + G+ ++L LF +M++ G R +
Sbjct: 271 MIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPS 330
Query: 406 RSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFE 465
S+LS CA LASL+ G+Q+H LV+ F+ +V + L+ MY KCG + +A F+
Sbjct: 331 FPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFD 390
Query: 466 EIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEK 525
KD+I WN++I+GYA HG G++AL +F M + G P+ +T++ IL+ACS+ G +E+
Sbjct: 391 RFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEE 450
Query: 526 GTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGAC 585
G E F SM + V P +HY+C VD+LGRAG++D+A L+++M +PDA WGALLGAC
Sbjct: 451 GLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGAC 510
Query: 586 RLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTG 645
+ + + +LAE AA+ +FE EP+NAG YVLLS++ A+ +WGDV+ VR MR V K G
Sbjct: 511 KTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPG 570
Query: 646 YSWLEVQNKVHTFSVGDTL-HPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKE 704
SW+EV KVH F+ G HPE+ I LE+ + L++ G+ VLHDV EEEK
Sbjct: 571 CSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKV 630
Query: 705 HMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRF 764
L HSE+LAVAYG+L +P G PIRVMKNLRVC DCH AIK ISK+ R IILRD NRF
Sbjct: 631 DSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRF 690
Query: 765 HHFSGGSCSCGDYW 778
HHF+ G CSC DYW
Sbjct: 691 HHFNNGECSCRDYW 704
|
|
| TAIR|locus:2151501 AT5G46460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1301 (463.0 bits), Expect = 1.0e-132, P = 1.0e-132
Identities = 262/661 (39%), Positives = 396/661 (59%)
Query: 128 VMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEIS 187
V+I ++ ++ + AR +F +P V + M++GY ++ A +FD M ++ +S
Sbjct: 40 VLICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVS 99
Query: 188 WNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDE 247
WN +++ V+ G + A LF+ VVSW +++ G + ++ A+ +F +MPV+D
Sbjct: 100 WNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDT 159
Query: 248 VSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPE- 306
+WN+M+ GY Q + +A +LF++ P K+V +WT M+ G QN + EA +F M
Sbjct: 160 AAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRC 219
Query: 307 --KNTVS-WNAMIAGYVQTKRMDMARELFEAMTCKNVASWN-----TMITGYAQSGEITH 358
K+T + +I M ++ + K + ++IT YA I
Sbjct: 220 CIKSTSRPFTCVITACANAPAFHMGIQV-HGLIIKLGFLYEEYVSASLITFYANCKRIGD 278
Query: 359 ARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCAN 418
+R +FD W A+++GY+ + ED+L +F M R N+S F S L++C+
Sbjct: 279 SRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSA 338
Query: 419 LASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTM 478
L +L+ GK++HG VK+G E FVGN+L+VMY G+V +A F +I K ++SWN++
Sbjct: 339 LGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSI 398
Query: 479 IAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYG 538
I G A+HG GK A ++F M + +PD+IT G+LSACSH G +EKG + FY M+
Sbjct: 399 IVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGIN 458
Query: 539 VIPNS-KHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKA 597
I +HYTCMVD+LGR G+L EA+ L++ M +P+ W ALL ACR++ + EKA
Sbjct: 459 HIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKA 518
Query: 598 AEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHT 657
A IF ++ +++ YVLLSN+YA++GRW +VSK+R+KM+ G+ K G SW+ ++ K H
Sbjct: 519 AAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHE 578
Query: 658 FSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVA 717
F GD P RIY LE L KLK+ G+ + LHDV +E+KE ML YHSE+LA+A
Sbjct: 579 FFSGD--QPHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIA 636
Query: 718 YGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGSCSCGDY 777
+G+++ G + VMKNLRVCEDCH IK IS +VGR I+LRD RFHHF G+CSCGDY
Sbjct: 637 FGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDY 696
Query: 778 W 778
W
Sbjct: 697 W 697
|
|
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1286 (457.8 bits), Expect = 3.9e-131, P = 3.9e-131
Identities = 255/714 (35%), Positives = 412/714 (57%)
Query: 82 HVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSA 141
++ ++P + YN ++ Y L AR+VFD++PQ +L SWN ++ Y + +S
Sbjct: 31 NIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISE 90
Query: 142 ARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEK-----NEISWNGLLAAYV 196
+ FE +P RD V+WN ++ GY+ +G AA + ++ M+ ++ +L
Sbjct: 91 MESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSS 150
Query: 197 QNGRIEEACMLFES--KANWE--VVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNT 252
NG + + K +E ++ + L+ + + DAK +F + R+ V +N+
Sbjct: 151 SNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNS 210
Query: 253 MITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMP----EKN 308
++ G + +A +LF KD +W AM+ G QNG EA F M + +
Sbjct: 211 LMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMD 269
Query: 309 TVSWNAMIAGYVQTKRMDMARELFEAMTCKN----VASWNTMITGYAQSGEITHARNLFD 364
+ +++ ++ +++ + N + + +I Y + + +A+ +FD
Sbjct: 270 QYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFD 329
Query: 365 RMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLEL 424
RM Q + +SW A++ GY Q+G +E+++++F++M+R G + +S CAN++SLE
Sbjct: 330 RMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEE 389
Query: 425 GKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYAR 484
G Q HG+ + G V N+L+ +Y KCG ++++ F E+ +D +SW M++ YA+
Sbjct: 390 GSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQ 449
Query: 485 HGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSK 544
G + + LF+ M G+KPD +T+ G++SACS GLVEKG YF M +YG++P+
Sbjct: 450 FGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIG 509
Query: 545 HYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEM 604
HY+CM+DL R+GRL+EA + MPF PDA W LL ACR G E+ + AAE + E+
Sbjct: 510 HYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIEL 569
Query: 605 EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTL 664
+P + Y LLS++YA+ G+W V+++R MR++ VKK G SW++ + K+H+FS D
Sbjct: 570 DPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDES 629
Query: 665 HPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIP 724
P D+IYA LEEL K+ +G+ T V HDV E K ML YHSE+LA+A+G++ +P
Sbjct: 630 SPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVP 689
Query: 725 AGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778
+G+PIRV KNLRVC DCHNA KHIS + GR I++RD RFH F G+CSCGD+W
Sbjct: 690 SGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1273 (453.2 bits), Expect = 9.3e-130, P = 9.3e-130
Identities = 278/727 (38%), Positives = 413/727 (56%)
Query: 64 WNVAITTHMRNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDL 123
WN ++ + + G DS F+ +P+R SVS+ MI GY GQ A +V M + +
Sbjct: 83 WNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGI 142
Query: 124 VSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEK 183
++ + S++A R M + V S+ L L
Sbjct: 143 EPTQFTLTNVLA--SVAATRC---METGKKVHSFIVKLG------------------LRG 179
Query: 184 NEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMP 243
N N LL Y + G A +F+ ++ SWN+++ ++ ++ A F++M
Sbjct: 180 NVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMA 239
Query: 244 VRDEVSWNTMITGYAQNNYLAEAQRLF-----EEAPVKDVFTWTAMVSGYVQNGKVDEAR 298
RD V+WN+MI+G+ Q Y A +F + D FT +++S K+ +
Sbjct: 240 ERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGK 299
Query: 299 MIFDAMP----EKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKN--VASWNTMITGYAQ 352
I + + + + NA+I+ Y + ++ AR L E K+ + + ++ GY +
Sbjct: 300 QIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIK 359
Query: 353 SGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSV 412
G++ A+N+F + D ++W A+I GY Q G +++ LF M G+R N ++
Sbjct: 360 LGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAM 419
Query: 413 LSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEI-VDKD 471
LS ++LASL GKQ+HG VK G V NAL+ MY K G++ A AF+ I ++D
Sbjct: 420 LSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERD 479
Query: 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFY 531
+SW +MI A+HG ++AL LFE+M G++PD IT VG+ SAC+H GLV +G +YF
Sbjct: 480 TVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFD 539
Query: 532 SMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKT 591
M +IP HY CMVDL GRAG L EAQ ++ MP EPD TWG+LL ACR++
Sbjct: 540 MMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNI 599
Query: 592 ELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEV 651
+L + AAE + +EPEN+G Y L+NLY+A G+W + +K+R M+D VKK G+SW+EV
Sbjct: 600 DLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEV 659
Query: 652 QNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHS 711
++KVH F V D HPEK+ IY ++++ ++K+ G+V T VLHD+ EE KE +LR+HS
Sbjct: 660 KHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHS 719
Query: 712 EKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGS 771
EKLA+A+G++S P +R+MKNLRVC DCH AIK ISK+VGR II+RD RFHHF G
Sbjct: 720 EKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGF 779
Query: 772 CSCGDYW 778
CSC DYW
Sbjct: 780 CSCRDYW 786
|
|
| TAIR|locus:2115130 AT4G37170 "AT4G37170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1268 (451.4 bits), Expect = 3.2e-129, P = 3.2e-129
Identities = 244/572 (42%), Positives = 358/572 (62%)
Query: 216 VVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV 275
+V WN L+ + K L DA+ +FD MP RD SWN M+ GYA+ L EA++LF+E
Sbjct: 120 IVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTE 179
Query: 276 KDVFTWTAMVSGYVQNGKVDEARMIFDAM---PEK--NTVSWNAMIAGYVQTKRMDMARE 330
KD ++WTAMV+GYV+ + +EA +++ M P N + + +A K + +E
Sbjct: 180 KDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKE 239
Query: 331 LFEAMTCKNVAS----WNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGY 386
+ + + S W++++ Y + G I ARN+FD++ + D +SW ++I Y +S
Sbjct: 240 IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSR 299
Query: 387 SEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNA 446
+ LF E+ ER N F VL+ CA+L + ELGKQ+HG + +VGF+ F ++
Sbjct: 300 WREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSS 359
Query: 447 LLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD 506
L+ MY KCG++E A H + D++SW ++I G A++G +AL F+ + G KPD
Sbjct: 360 LVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPD 419
Query: 507 DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLM 566
+T V +LSAC+H GLVEKG E+FYS+ + + S HYTC+VDLL R+GR ++ ++++
Sbjct: 420 HVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVI 479
Query: 567 KNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWG 626
MP +P W ++LG C YG +LAE+AA+ +F++EPEN YV ++N+YAA+G+W
Sbjct: 480 SEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWE 539
Query: 627 DVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDG 686
+ K+R +M++ GV K G SW E++ K H F DT HP ++I +L EL K+K++G
Sbjct: 540 EEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEG 599
Query: 687 FVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIK 746
+V +T LVLHDV +E+KE L YHSEKLAVA+ ILS G I+V KNLR C DCH AIK
Sbjct: 600 YVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIK 659
Query: 747 HISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778
IS I R I +RD+ RFH F G CSCGDYW
Sbjct: 660 FISNITKRKITVRDSTRFHCFENGQCSCGDYW 691
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
Identities = 246/570 (43%), Positives = 353/570 (61%)
Query: 221 SLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFT 280
SL+ +V+ RL DA +FD+ P RD VS+ +I GYA Y+ AQ+LF+E PVKDV +
Sbjct: 174 SLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVS 233
Query: 281 WTAMVSGYVQNGKVDEARMIF-DAM-----PEKNTVSWNAMIAGYVQTKRMDMARELF-- 332
W AM+SGY + G EA +F D M P+++T+ +++ Q+ +++ R++
Sbjct: 234 WNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMV--TVVSACAQSGSIELGRQVHLW 291
Query: 333 --EAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDS 390
+ N+ N +I Y++ GE+ A LF+R+P D ISW +I GY +++
Sbjct: 292 IDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEA 351
Query: 391 LRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVK--VGFEAGCFVGNALL 448
L LF EM R GE N S+L CA+L ++++G+ +H + K G + +L+
Sbjct: 352 LLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLI 411
Query: 449 VMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI 508
MY KCG +E A+ F I+ K + SWN MI G+A HG + LF M+ +GI+PDDI
Sbjct: 412 DMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDI 471
Query: 509 TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKN 568
T VG+LSACSH+G+++ G F +M +DY + P +HY CM+DLLG +G EA+ ++
Sbjct: 472 TFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINM 531
Query: 569 MPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628
M EPD W +LL AC+++G EL E AE + ++EPEN G YVLLSN+YA++GRW +V
Sbjct: 532 MEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEV 591
Query: 629 SKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFV 688
+K R + D+G+KKV G S +E+ + VH F +GD HP IY LEE+E L++ GFV
Sbjct: 592 AKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFV 651
Query: 689 YSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHI 748
T VL ++ EE KE LR+HSEKLA+A+G++S G + ++KNLRVC +CH A K I
Sbjct: 652 PDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLI 711
Query: 749 SKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778
SKI R II RD RFHHF G CSC DYW
Sbjct: 712 SKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1144 (407.8 bits), Expect = 3.8e-127, Sum P(2) = 3.8e-127
Identities = 228/542 (42%), Positives = 346/542 (63%)
Query: 251 NTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGK-VDEARMIF----DAMP 305
N ++T YA+ YL E +++F P D +W +++ ++ + + EA + F A
Sbjct: 454 NALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQ 513
Query: 306 EKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVA----SWNTMITGYAQSGEITHARN 361
+ N ++++++++ ++ +++ N+A + N +I Y + GE+
Sbjct: 514 KLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEK 573
Query: 362 LFDRMPQH-DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLA 420
+F RM + D ++W ++I+GY + +L L M + G+RL+ + +VLS A++A
Sbjct: 574 IFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVA 633
Query: 421 SLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIA 480
+LE G ++H V+ E+ VG+AL+ MY KCG ++ A F + ++ SWN+MI+
Sbjct: 634 TLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMIS 693
Query: 481 GYARHGFGKDALMLFESMKTVG-IKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGV 539
GYARHG G++AL LFE+MK G PD +T VG+LSACSH GL+E+G ++F SM+ YG+
Sbjct: 694 GYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGL 753
Query: 540 IPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGAC-RLYG-KTELAEKA 597
P +H++CM D+LGRAG LD+ ++ ++ MP +P+ W +LGAC R G K EL +KA
Sbjct: 754 APRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKA 813
Query: 598 AEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHT 657
AE++F++EPENA YVLL N+YAA GRW D+ K R KM+D VKK GYSW+ +++ VH
Sbjct: 814 AEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHM 873
Query: 658 FSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVA 717
F GD HP+ D IY L+EL K++ G+V T L+D+ +E KE +L YHSEKLAVA
Sbjct: 874 FVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVA 933
Query: 718 YGILSIPAGR-PIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGSCSCGD 776
+ + + + PIR+MKNLRVC DCH+A K+ISKI GR IILRD+NRFHHF G+CSC D
Sbjct: 934 FVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSD 993
Query: 777 YW 778
+W
Sbjct: 994 FW 995
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1244 (443.0 bits), Expect = 1.1e-126, P = 1.1e-126
Identities = 287/789 (36%), Positives = 431/789 (54%)
Query: 10 LHSSCILHQHTQSINRLQSPANTNPYPSKKTLKRHLNSKSRNKPKPAGDWDIRQWNVAIT 69
LH+ ++ + Q++ N Y L RH +N+ D+ WN+ I+
Sbjct: 73 LHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNR-------DVYAWNLMIS 125
Query: 70 THMRNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLV----- 124
+ R G + F+ S ++ + +L R V D L
Sbjct: 126 GYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKA----CRTVIDGNKIHCLALKFGF 181
Query: 125 SWNVMISG-----YVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDR 179
W+V ++ Y R K++ AR LF+ MP RD+ SWN M+SGY Q+G A A + +
Sbjct: 182 MWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNG 241
Query: 180 MLEKNEISWNGLLAAYVQNGRIEEACML--FESKANWE---VVSWNSLMGGFVKQKRLGD 234
+ + ++ LL+A + G + + K E VS N L+ + + RL D
Sbjct: 242 LRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVS-NKLIDLYAEFGRLRD 300
Query: 235 AKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVK----DVFTWTAMVSGYVQ 290
+ +FDRM VRD +SWN++I Y N A LF+E + D T ++ S Q
Sbjct: 301 CQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQ 360
Query: 291 NGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGY 350
G + R + G+ K + +++ N ++ Y
Sbjct: 361 LGDIRACRSV----------------QGFTLRKGWFL----------EDITIGNAVVVMY 394
Query: 351 AQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGE-RLNRSPF 409
A+ G + AR +F+ +P D ISW II+GYAQ+G++ +++ ++ M+ GE N+ +
Sbjct: 395 AKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTW 454
Query: 410 TSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD 469
SVL C+ +L G +LHG+L+K G FV +L MY KCG +E+A F +I
Sbjct: 455 VSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPR 514
Query: 470 KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEY 529
+ + WNT+IA + HG G+ A+MLF+ M G+KPD IT V +LSACSH+GLV++G
Sbjct: 515 VNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWC 574
Query: 530 FYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYG 589
F M DYG+ P+ KHY CMVD+ GRAG+L+ A +K+M +PDA+ WGALL ACR++G
Sbjct: 575 FEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHG 634
Query: 590 KTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWL 649
+L + A+E +FE+EPE+ G +VLLSN+YA++G+W V ++R +G++K G+S +
Sbjct: 635 NVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSM 694
Query: 650 EVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRY 709
EV NKV F G+ HP + +Y L L+ KLK G+V + VL DV ++EKEH+L
Sbjct: 695 EVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMS 754
Query: 710 HSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSG 769
HSE+LA+A+ +++ PA IR+ KNLRVC DCH+ K ISKI R II+RD+NRFHHF
Sbjct: 755 HSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKN 814
Query: 770 GSCSCGDYW 778
G CSCGDYW
Sbjct: 815 GVCSCGDYW 823
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SY02 | PP301_ARATH | No assigned EC number | 0.6718 | 0.9884 | 0.9846 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00017804001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (766 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 778 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-169 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-153 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-40 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-31 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-27 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-21 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 510 bits (1315), Expect = e-169
Identities = 266/750 (35%), Positives = 398/750 (53%), Gaps = 58/750 (7%)
Query: 82 HVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSA 141
+S P NAM+S ++ G+L A VF +MP+RDL SWNV++ GY +
Sbjct: 111 RALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDE 170
Query: 142 ARNLFEMM----PKRDVVSW-----------------------------------NTMLS 162
A L+ M + DV ++ N +++
Sbjct: 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230
Query: 163 GYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLF----ESKANWEVVS 218
Y + G +AR +FDRM ++ ISWN +++ Y +NG E LF E + ++++
Sbjct: 231 MYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290
Query: 219 WNSLMG--GFVKQKRLGDA--KWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAP 274
S++ + +RLG ++ D N++I Y EA+++F
Sbjct: 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350
Query: 275 VKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQT----KRMDMARE 330
KD +WTAM+SGY +NG D+A + M + N IA + +D+ +
Sbjct: 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 331 LFEAMTCKNVASW----NTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGY 386
L E K + S+ N +I Y++ I A +F +P+ D ISW +IIAG +
Sbjct: 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR 470
Query: 387 SEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNA 446
++L F +M + N + LS CA + +L GK++H +++ G F+ NA
Sbjct: 471 CFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529
Query: 447 LLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD 506
LL +Y +CG + A++ F +KDV+SWN ++ GY HG G A+ LF M G+ PD
Sbjct: 530 LLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588
Query: 507 DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLM 566
++T + +L ACS +G+V +G EYF+SM Y + PN KHY C+VDLLGRAG+L EA N +
Sbjct: 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648
Query: 567 KNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWG 626
MP PD A WGALL ACR++ EL E AA+ IFE++P + G Y+LL NLYA +G+W
Sbjct: 649 NKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD 708
Query: 627 DVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDG 686
+V++VR MR+ G+ G SW+EV+ KVH F D HP+ I LE K+K G
Sbjct: 709 EVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASG 768
Query: 687 FVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIK 746
S + ++ E K+ + HSE+LA+A+G+++ G PI V KNL +CE+CHN +K
Sbjct: 769 LAGSESSSMDEI-EVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVK 827
Query: 747 HISKIVGRLIILRDNNRFHHFSGGSCSCGD 776
ISKIV R I +RD +FHHF G CSCGD
Sbjct: 828 FISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 462 bits (1191), Expect = e-153
Identities = 211/618 (34%), Positives = 347/618 (56%), Gaps = 17/618 (2%)
Query: 178 DRMLEKNEISWNGLLAAYVQNGRIEEACMLFE-SKANW----EVVSWNSLMGGFVKQKRL 232
D + K+ +S + V GR EA LFE +A ++++L+ + K +
Sbjct: 80 DTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI 139
Query: 233 GDAKWIFDRMPVR----DEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGY 288
K ++ + D+ N ++ + + L +A+RLF+E P +++ +W ++ G
Sbjct: 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL 199
Query: 289 VQNGKVDEARMIFDAMPEK----NTVSWNAMIAGYVQTKRMDMAREL----FEAMTCKNV 340
V G EA +F M E ++ M+ ++L + +
Sbjct: 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT 259
Query: 341 ASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRY 400
+I Y++ G+I AR +FD MP+ ++W +++AGYA GYSE++L L+ EM+
Sbjct: 260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319
Query: 401 GERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEA 460
G +++ F+ ++ + LA LE KQ H L++ GF AL+ +Y K G +E+A
Sbjct: 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379
Query: 461 YHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHT 520
+ F+ + K++ISWN +IAGY HG G A+ +FE M G+ P+ +T + +LSAC ++
Sbjct: 380 RNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439
Query: 521 GLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGA 580
GL E+G E F SM+ ++ + P + HY CM++LLGR G LDEA +++ PF+P W A
Sbjct: 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAA 499
Query: 581 LLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGV 640
LL ACR++ EL AAE ++ M PE YV+L NLY +SGR + +KV ++ +G+
Sbjct: 500 LLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
Query: 641 KKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGE 700
+W+EV+ + H+F GD LHP+ IY L+EL ++ + G+V +L DV E
Sbjct: 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDE 619
Query: 701 EEKEHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRD 760
+E++ RYHSEKLA+A+G+++ P+++ ++ R+C+DCH IK I+ + R I++RD
Sbjct: 620 DEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRD 679
Query: 761 NNRFHHFSGGSCSCGDYW 778
+RFHHF G CSCGDYW
Sbjct: 680 ASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (405), Expect = 1e-40
Identities = 98/336 (29%), Positives = 168/336 (50%), Gaps = 15/336 (4%)
Query: 282 TAMVSGYVQNGKVDEARMIFDAMPE-KNTVSWNAMIAGY--VQTKRMDMARELFEAMTCK 338
+ + +G++++A + ++M E + V +A +A + + KR +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 339 NVASW-----NTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRL 393
+ S N M++ + + GE+ HA +F +MP+ D SW ++ GYA++GY +++L L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 394 FIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCK 453
+ M G R + F VL TC + L G+++H +V+ GFE V NAL+ MY K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 454 CGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGI 513
CG V A F+ + +D ISWN MI+GY +G + L LF +M+ + + PD +T+ +
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 514 LSACSHTGLVEKGTE-YFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFE 572
+SAC G G E + Y + + V + ++ + G EA+ + M +
Sbjct: 295 ISACELLGDERLGREMHGYVVKTGFAV--DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352
Query: 573 PDAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608
DA +W A++ Y K L +KA E ME +N
Sbjct: 353 -DAVSWTAMISG---YEKNGLPDKALETYALMEQDN 384
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 3e-31
Identities = 116/416 (27%), Positives = 182/416 (43%), Gaps = 79/416 (18%)
Query: 95 YNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDV 154
N ++ ++ G L AR++FD+MP+R+L SW +I G V + A LF M
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREM----- 215
Query: 155 VSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANW 214
W +DA R F ML + GL +A G+ C+L
Sbjct: 216 --WEDG---------SDAEPRTFVVMLRAS----AGLGSARA--GQQLHCCVLKTGVVGD 258
Query: 215 EVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEE-- 272
VS +L+ + K + DA+ +FD MP + V+WN+M+ GYA + Y EA L+ E
Sbjct: 259 TFVSC-ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317
Query: 273 -APVK-DVFTWTAMVS-----GYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRM 325
+ V D FT++ M+ +++ K A +I P + V+ A++ Y + RM
Sbjct: 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP-LDIVANTALVDLYSKWGRM 376
Query: 326 DMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRM------PQHDCISWAAIIA 379
+ AR +F+ M KN+ SWN +I GY G T A +F+RM P H +++ A+++
Sbjct: 377 EDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH--VTFLAVLS 434
Query: 380 GYAQSGYSEDSLRLFIEMKR-----------------YGER---------LNRSPFT--- 410
SG SE +F M G + R+PF
Sbjct: 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV 494
Query: 411 ----SVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGN--ALLVMYCKCGSVEEA 460
++L+ C +LELG+ +L +G E + N LL +Y G EA
Sbjct: 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEK---LNNYVVLLNLYNSSGRQAEA 547
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 2e-27
Identities = 95/395 (24%), Positives = 158/395 (40%), Gaps = 86/395 (21%)
Query: 60 DIRQWNVAITTHMRNGCCDSALHVFNSMPRRSSVS------------------------- 94
D WN I+ + NG C L +F +M R SV
Sbjct: 252 DCISWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACELLGDERLGREM 310
Query: 95 ---------------YNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSL 139
N++I YL G A +VF +M +D VSW MISGY +N
Sbjct: 311 HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLP 370
Query: 140 SAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNG 199
A + +M + +V +EI+ +L+A G
Sbjct: 371 DKALETYALMEQDNVSP---------------------------DEITIASVLSACACLG 403
Query: 200 RIEEACMLFESKANWEVVSW----NSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMIT 255
++ L E ++S+ N+L+ + K K + A +F +P +D +SW ++I
Sbjct: 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463
Query: 256 GYAQNNYLAEAQRLFEEAPVK---DVFTWTAMVS-----GYVQNGKVDEARMIFDAMPEK 307
G NN EA F + + + T A +S G + GK A ++ +
Sbjct: 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523
Query: 308 NTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMP 367
+ NA++ YV+ RM+ A F + K+V SWN ++TGY G+ + A LF+RM
Sbjct: 524 GFLP-NALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMV 581
Query: 368 QH----DCISWAAIIAGYAQSGYSEDSLRLFIEMK 398
+ D +++ +++ ++SG L F M+
Sbjct: 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 2e-21
Identities = 52/130 (40%), Positives = 68/130 (52%), Gaps = 21/130 (16%)
Query: 645 GYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEE-- 702
G W E GD HP EEL ++K +G V TK + HDV EE
Sbjct: 2 GCVWSEG----KKTLSGDGSHPTSK------EELFQRIKVEGVVPETKEIGHDVDAEEFR 51
Query: 703 ----KEHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIIL 758
K +L H+EK A+AYG+L R I+V+K R+C DCH ++I+K GR II+
Sbjct: 52 DNGIKGKLLASHAEKQALAYGLL---TTRIIKVLK--RMCGDCHEFFRYIAKYTGREIIV 106
Query: 759 RDNNRFHHFS 768
RD +RFHHF
Sbjct: 107 RDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 1e-16
Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 54/295 (18%)
Query: 65 NVAITTHMRNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMP---QR 121
N I + + C D AL VF+++P + +S+ ++I+G LN + A F QM +
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP 487
Query: 122 DLVSW-----------------------------------NVMISGYVRNKSLSAARNLF 146
+ V+ N ++ YVR ++ A N F
Sbjct: 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547
Query: 147 EMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEK----NEISWNGLLAAYVQNGRIE 202
++DVVSWN +L+GY +G A +F+RM+E +E+++ LL A ++G +
Sbjct: 548 NSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606
Query: 203 EACMLFES-KANWEVVS----WNSLMGGFVKQKRLGDAKWIFDRMPVR-DEVSWNTMITG 256
+ F S + + + + ++ + +L +A ++MP+ D W ++
Sbjct: 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNA 666
Query: 257 --YAQNNYLAE--AQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK 307
++ L E AQ +FE P V + + + Y GK DE + M E
Sbjct: 667 CRIHRHVELGELAAQHIFELDP-NSVGYYILLCNLYADAGKWDEVARVRKTMREN 720
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 2e-15
Identities = 60/286 (20%), Positives = 132/286 (46%), Gaps = 54/286 (18%)
Query: 75 GCCDSALHVFNSMPRRSSVSYNAMISGYLLNG---------------------------- 106
G + A VF+ MP +++V++N+M++GY L+G
Sbjct: 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332
Query: 107 -------QLDPARQVFDQMPQR----DLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVV 155
L+ A+Q + + D+V+ ++ Y + + ARN+F+ MP+++++
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392
Query: 156 SWNTMLSGYAQNGYADAARRIFDRMLEK----NEISWNGLLAAYVQNGRIEEACMLFES- 210
SWN +++GY +G A +F+RM+ + N +++ +L+A +G E+ +F+S
Sbjct: 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452
Query: 211 ----KANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVS-WNTMITG--YAQNNYL 263
+ + + ++ ++ L +A + R P + V+ W ++T +N L
Sbjct: 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLEL 512
Query: 264 AE--AQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK 307
A++L+ P K + + +++ Y +G+ EA + + + K
Sbjct: 513 GRLAAEKLYGMGPEK-LNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 1e-11
Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 45/221 (20%)
Query: 409 FTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV 468
+T+++STCA ++ ++ ++V G EA AL+ + G V +A+ A+ +
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 469 DKDV----ISWNTMIAGYARHGFGKDALMLFESMK--TVGIKPDDITMVGILSACSHTGL 522
K+V + +N +I+ + G A + MK T I PD IT+ ++ AC++ G
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 523 VE--------------KGT-----------------EYFYS----MNRDYGVIPNSKHYT 547
V+ KGT ++ S M + GV P+ ++
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFS 653
Query: 548 CMVDLLGRAGRLDEAQNLMKNMP---FEPDAATWGALLGAC 585
+VD+ G AG LD+A ++++ + ++ +L+GAC
Sbjct: 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 6e-11
Identities = 69/317 (21%), Positives = 144/317 (45%), Gaps = 27/317 (8%)
Query: 268 RLFEEAPVK-DVFTWTAMVSGYVQNGKVDEARMIFDAMP----EKNTVSWNAMIAGYVQT 322
RL +EA +K D +T ++S ++GKVD +F M E N ++ A+I G +
Sbjct: 461 RLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520
Query: 323 KRMDMARELFEAMTCKNVAS----WNTMITGYAQSGEITHARNLFDRM--------PQHD 370
++ A + M KNV +N +I+ QSG + A ++ M P H
Sbjct: 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH- 579
Query: 371 CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHG 430
I+ A++ A +G + + ++ + Y + +T +++C+ + ++
Sbjct: 580 -ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638
Query: 431 QLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDV----ISWNTMIAGYARHG 486
+ K G + +AL+ + G +++A+ ++ + + +S+++++ +
Sbjct: 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698
Query: 487 FGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHY 546
K AL L+E +K++ ++P TM +++A + K E M + G+ PN+ Y
Sbjct: 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM-KRLGLCPNTITY 757
Query: 547 TCMVDLLGRAGRLDEAQ 563
+ LL + R D+A
Sbjct: 758 SI---LLVASERKDDAD 771
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 1e-10
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 470 KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSH 519
DV+++NT+I GY + G ++AL LF MK GIKP+ T ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 3e-09
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 307 KNTVSWNAMIAGYVQTKRMDMARELFEAMTCK----NVASWNTMITGYAQ 352
+ V++N +I GY + +++ A +LF M + NV +++ +I G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 42/243 (17%)
Query: 407 SPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEE 466
S F ++S CA+ ++ ++ + + G +A C + L+ K G V+ + F E
Sbjct: 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE 497
Query: 467 I----VDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGL 522
+ V+ +V ++ +I G AR G A + M++ +KPD + ++SAC +G
Sbjct: 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA 557
Query: 523 VEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALL 582
V+ R + V+ K E P +PD T GAL+
Sbjct: 558 VD----------RAFDVLAEMK---------------AETH------PIDPDHITVGALM 586
Query: 583 GACRLYGKTELAEKAAEVIFEMEPEN----AGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638
AC G+ ++A EV + N +Y + N + G W + M+ +
Sbjct: 587 KACANAGQ---VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643
Query: 639 GVK 641
GVK
Sbjct: 644 GVK 646
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 2e-08
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 276 KDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK----NTVSWNAMIAGY 319
DV T+ ++ GY + GKV+EA +F+ M ++ N +++ +I G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 13/49 (26%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 91 SSVSYNAMISGYLLNGQLDPARQVFDQMPQR----DLVSWNVMISGYVR 135
V+YN +I GY G+++ A ++F++M +R ++ +++++I G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 122 DLVSWNVMISGYVRNKSLSAARNLFEMMPKR----DVVSWNTMLSGYAQ 166
D+V++N +I GY + + A LF M KR +V +++ ++ G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 8e-08
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 153 DVVSWNTMLSGYAQNGYADAARRIFDRMLEK----NEISWNGLLAAY 195
DVV++NT++ GY + G + A ++F+ M ++ N +++ L+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 1e-07
Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 10/161 (6%)
Query: 452 CKC-GSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKD-ALMLFESMKTVGIKPDDIT 509
CK +V+EA+ F +++ +S M+ D AL + ++ G+K D
Sbjct: 416 CKKQRAVKEAF-RFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKL 474
Query: 510 MVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDE---AQNLM 566
++S C+ +G V+ E F+ M + GV N + ++D RAG++ + A +M
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533
Query: 567 KNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPE 607
++ +PD + AL+ AC G++ ++A +V+ EM+ E
Sbjct: 534 RSKNVKPDRVVFNALISAC---GQSGAVDRAFDVLAEMKAE 571
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-06
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Query: 246 DEVSWNTMITGYAQNNYLAEAQRLFEE------APVKDVFTWTAMVSGY 288
D V++NT+I GY + + EA +LF E P +V+T++ ++ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP--NVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 52/267 (19%), Positives = 114/267 (42%), Gaps = 30/267 (11%)
Query: 274 PVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNT---------VSWNAMIAGYVQTKR 324
P + VF A++S Q+G VD A FD + E ++ A++ +
Sbjct: 540 PDRVVFN--ALISACGQSGAVDRA---FDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 325 MDMARELFEAMTCKNV----ASWNTMITGYAQSGEITHARNLFDRMP----QHDCISWAA 376
+D A+E+++ + N+ + + +Q G+ A +++D M + D + ++A
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 377 II--AGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVK 434
++ AG+A G + + + + ++ G +L ++S++ C+N + + +L+ +
Sbjct: 655 LVDVAGHA--GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712
Query: 435 VGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD----KDVISWNTMIAGYARHGFGKD 490
+ NAL+ C+ + +A E+ + I+++ ++ R
Sbjct: 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772
Query: 491 ALMLFESMKTVGIKPDDITMVGILSAC 517
L L K GIKP+ + I C
Sbjct: 773 GLDLLSQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 4e-06
Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 216 VVSWNSLMGGFVKQKRLGDAKWIFDRMPVR----DEVSWNTMITGYAQ 259
VV++N+L+ G+ K+ ++ +A +F+ M R + +++ +I G +
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 9e-06
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGI 503
+++N++I+GY + G ++AL LF+ MK G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD 507
+++NT+I G + G ++AL LF+ MK GI+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 338 KNVASWNTMITGYAQSGEITHARNLFDRMPQHDC----ISWAAIIAGYAQ 383
+V ++NT+I GY + G++ A LF+ M + +++ +I G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 155 VSWNTMLSGYAQNGYADAARRIFDRMLEKN 184
V++N+++SGY + G + A +F M EK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 279 FTWTAMVSGYVQNGKVDEARMIFDAMPEKN 308
T+ +++SGY + GK++EA +F M EK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 4e-05
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 148 MMPKRDVVSWNTMLSGYAQNGYADAARRIFDRM 180
K DVV++NT++ G + G D A + D M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (96), Expect = 6e-05
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 277 DVFTWTAMVSGYVQNGKVDEARMIFDAMP 305
DV T+ ++ G + G+VDEA + D M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 310 VSWNAMIAGYVQTKRMDMARELFEAMTCKNV 340
V++N++I+GY + +++ A ELF+ M K V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 93 VSYNAMISGYLLNGQLDPARQVFDQMP 119
V+YN +I G G++D A ++ D+M
Sbjct: 8 VTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 2e-04
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 183 KNEISWNGLLAAYVQNGRIEEACMLFES--KANWE--VVSWNSLMGGFVK 228
+ +++N L+ Y + G++EEA LF K + V +++ L+ G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 541 PNSKHYTCMVDLLGRAGRLDEAQNL---MKNMPFEPDAATWGALLGAC 585
P+ Y ++D + G+++EA L MK +P+ T+ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 241 RMPVRDEVSWNTMITGYAQNNYLAEAQRLFEE 272
+ D V++NT+I G + + EA L +E
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 124 VSWNVMISGYVRNKSLSAARNLFEMMPKRDV 154
V++N +ISGY + L A LF+ M ++ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 155 VSWNTMLSGYAQNGYADAARRIFDRMLEKN 184
V++NT++ G + G + A +F M E+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 4e-04
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 445 NALLVMYCKCGSVEEAYHAFEEIVDK----DVISWNTMIAGYAR 484
N L+ YCK G VEEA F E+ + +V +++ +I G +
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 342 SWNTMITGYAQSGEITHARNLFDRMPQHDC 371
++N++I+GY ++G++ A LF M +
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 279 FTWTAMVSGYVQNGKVDEARMIFDAMPEKN 308
T+ ++ G + G+V+EA +F M E+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 8e-04
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 64 WNVAITTHMRNGCCDSALHVFNSMPRR----SSVSYNAMISGY 102
+N I + + G + AL +FN M +R + +Y+ +I G
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 93 VSYNAMISGYLLNGQLDPARQVFDQMPQRDL 123
V+YN++ISGY G+L+ A ++F +M ++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 124 VSWNVMISGYVRNKSLSAARNLFEMMPKRDVV 155
V++N +I G + + A LF+ M +R +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 342 SWNTMITGYAQSGEITHARNLFDRMPQHDC 371
++NT+I G ++G + A LF M +
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.003
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 370 DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCAN 418
D +++ +I GY + G E++L+LF EMK+ G + N ++ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 248 VSWNTMITGYAQNNYLAEAQRLFEE 272
V++N++I+GY + L EA LF+E
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKE 25
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.004
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 471 DVISWNTMIAGYARHGFGKDALMLFESMK 499
DV+++NT+I G R G +A+ L + M+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.004
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 339 NVASWNTMITGYAQSGEITHARNLFDRMP 367
+V ++NT+I G ++G + A L D M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 778 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.77 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.72 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.71 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.71 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.7 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.53 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.51 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.51 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.48 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.45 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.44 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.41 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.39 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.38 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.34 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.33 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.32 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.3 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.3 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.29 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.28 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.28 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.27 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.23 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.22 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.22 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.22 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.19 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.14 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.11 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.1 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.1 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.08 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.07 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.05 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.04 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.03 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.99 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.99 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.99 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.98 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.96 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.94 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.93 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.9 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.84 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.84 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.84 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.8 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.8 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.8 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.8 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.75 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.74 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.73 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.67 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.63 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.59 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.58 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.55 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.55 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.52 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.52 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.49 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.49 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.49 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.48 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.48 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.46 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.46 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.41 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.4 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.4 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.39 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.38 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.37 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.35 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.32 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.32 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.32 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.28 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.25 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.21 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.21 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.2 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.19 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.17 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.17 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.13 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.11 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.07 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.06 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.06 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.03 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.01 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.0 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.98 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.97 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.96 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.93 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.91 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.9 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.9 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.87 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.81 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.8 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.78 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.76 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.73 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.71 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.62 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.6 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.57 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.57 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.56 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.53 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.51 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.49 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.47 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.45 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.39 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.39 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.36 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.35 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.35 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.25 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.23 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.21 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.2 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.19 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.18 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.14 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.1 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.1 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.1 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.09 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.08 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.08 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.06 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.02 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.02 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.99 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.99 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.98 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.97 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.89 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.8 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.76 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.72 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.7 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.69 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.66 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.64 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.6 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.55 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.52 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.51 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.49 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.49 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.46 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.43 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.41 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.35 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.35 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.33 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.29 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.24 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.11 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.07 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.06 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.06 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.04 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.04 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.99 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.96 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.93 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.88 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.85 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.75 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.56 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.56 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.51 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 95.46 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.44 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.44 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.43 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.4 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.25 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.21 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.19 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.13 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.04 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.96 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.94 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.93 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.8 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.64 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.54 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.5 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 94.14 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.09 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.01 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.89 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.84 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.73 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.73 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.61 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.55 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.55 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.38 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.36 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.35 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.19 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.01 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 92.9 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.9 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 92.25 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.13 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 91.95 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.93 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.2 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.12 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.95 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.54 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.43 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.19 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 89.99 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.81 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 89.77 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.69 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.65 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.58 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 89.51 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 89.51 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.43 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 89.25 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.09 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 88.9 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.85 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.84 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.4 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 88.38 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 88.28 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 88.06 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 87.84 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.77 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.44 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.32 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.01 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.89 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.66 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 86.39 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.19 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 86.18 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.74 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 85.63 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 85.55 | |
| KOG1498 | 439 | consensus 26S proteasome regulatory complex, subun | 85.43 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.42 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 85.18 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.14 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 84.71 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 84.1 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 83.74 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 83.16 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.98 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.59 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 82.45 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 82.19 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 82.0 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 81.36 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 81.18 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 80.95 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 80.15 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 80.06 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-149 Score=1332.74 Aligned_cols=682 Identities=38% Similarity=0.667 Sum_probs=644.4
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCCChhHHHHHHhhCC---------------------
Q 004024 92 SVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMP--------------------- 150 (778)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--------------------- 150 (778)
..++|+||.+|+++|+++.|+++|++|++||.++||+||.+|++.|++++|+++|++|.
T Consensus 121 ~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~ 200 (857)
T PLN03077 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI 200 (857)
T ss_pred chHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCc
Confidence 34456666666666666666666666666666666666666666666666666666653
Q ss_pred ------------------CCCcchHHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHHHHHHHHHhcc
Q 004024 151 ------------------KRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKA 212 (778)
Q Consensus 151 ------------------~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 212 (778)
.||+++||+||.+|+++|++++|.++|++|..||.++||+||.+|++.|++++|+++|++|.
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 201 PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 25667778899999999999999999999999999999999999999999999999999986
Q ss_pred c----CCccHhhHHHHHHHhcCChhHHHHHHhhCC----CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHH
Q 004024 213 N----WEVVSWNSLMGGFVKQKRLGDAKWIFDRMP----VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAM 284 (778)
Q Consensus 213 ~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~l 284 (778)
+ +|.+||++++.+|++.|+++.|.+++..|. .||+.+||+||.+|+++|++++|.++|++|..||+++||+|
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~l 360 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH
Confidence 5 467899999999999999999999999886 68999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHhCCC----CCcchHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHHHHHHHHhcCCh
Q 004024 285 VSGYVQNGKVDEARMIFDAMPE----KNTVSWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNTMITGYAQSGEI 356 (778)
Q Consensus 285 i~~~~~~g~~~~A~~l~~~m~~----~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~Li~~y~k~g~~ 356 (778)
|.+|++.|++++|+++|++|.+ ||..||++++.+|++.|++++|.++|+.+. .++..++|+||++|+++|++
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 9999999999999999999953 699999999999999999999999999998 78899999999999999999
Q ss_pred hHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcC
Q 004024 357 THARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVG 436 (778)
Q Consensus 357 ~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 436 (778)
++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||.+||+++|.+|++.|.++.|+++|..+.+.|
T Consensus 441 ~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999985 699999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 004024 437 FEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSA 516 (778)
Q Consensus 437 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a 516 (778)
+.+|..++|+||++|+|||++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|.+
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004024 517 CSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEK 596 (778)
Q Consensus 517 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 596 (778)
|++.|++++|+++|+.|.+++|+.|+..||+||+++|+|+|++++|++++++||++||..+|++|+++|+.|||.+.|+.
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHH
Q 004024 597 AAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLE 676 (778)
Q Consensus 597 ~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~ 676 (778)
+++++++++|++++.|++|+|+|+..|+|++|.++|+.|+++|++|+|||||||++|++|.|++||++||+.++||.+|+
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~ 758 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLE 758 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcccCCCccccccchhhHhhhhhhhhHHHHHHHhhhCCCCCCcEEEEecccccCccchhhHHhhhhcCeEE
Q 004024 677 ELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLI 756 (778)
Q Consensus 677 ~l~~~~~~~gy~p~~~~~~~~~~~~~k~~~l~~hse~la~~~gl~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i 756 (778)
+|..+|++.||+||++.++ |++||+||+.|++||||||||||||+||||+||||+||||||+|||+++||||||+||||
T Consensus 759 ~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i 837 (857)
T PLN03077 759 GFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREI 837 (857)
T ss_pred HHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEE
Confidence 9999999999999999998 558899999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcccccCCcccCCCC
Q 004024 757 ILRDNNRFHHFSGGSCSCGD 776 (778)
Q Consensus 757 ~~rd~~rfh~f~~g~csc~d 776 (778)
||||++|||||+||+|||||
T Consensus 838 ~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 838 SVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred EEecCCcceeCCCCcccCCC
Confidence 99999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-134 Score=1178.44 Aligned_cols=600 Identities=34% Similarity=0.635 Sum_probs=576.7
Q ss_pred CCcchHHHHHHHHHcCCChHHHHHHHHhcc-----cCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHH
Q 004024 152 RDVVSWNTMLSGYAQNGYADAARRIFDRML-----EKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGF 226 (778)
Q Consensus 152 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 226 (778)
++.++|+++|.+|.+.|++++|+++|+.|. .||..||++++.+|++.++++.|.++|..|.+.|+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~---------- 154 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF---------- 154 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----------
Confidence 344555666666666666666666666654 46888999999999999999999999999888776
Q ss_pred HhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCC
Q 004024 227 VKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPE 306 (778)
Q Consensus 227 ~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 306 (778)
.||+.+||+|+.+|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+
T Consensus 155 -----------------~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~ 217 (697)
T PLN03081 155 -----------------EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE 217 (697)
T ss_pred -----------------CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999999964
Q ss_pred ----CCcchHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHH
Q 004024 307 ----KNTVSWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAII 378 (778)
Q Consensus 307 ----~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li 378 (778)
+|..||+.++.+|+..|..+.|.++|..+. .+|..++|+||++|+++|++++|.++|++|+++|+++||+||
T Consensus 218 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li 297 (697)
T PLN03081 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSML 297 (697)
T ss_pred hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHH
Confidence 589999999999999999999999999988 789999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 004024 379 AGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVE 458 (778)
Q Consensus 379 ~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 458 (778)
.+|+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|.++.|+++|..+.+.|+.+|..++|+||++|+|+|+++
T Consensus 298 ~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcC
Q 004024 459 EAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYG 538 (778)
Q Consensus 459 ~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 538 (778)
+|.++|++|.+||+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.++|+.|.+++|
T Consensus 378 ~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 378 DARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 004024 539 VIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNL 618 (778)
Q Consensus 539 ~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~ 618 (778)
+.|+..||++|+++|+|+|++++|.+++++||++|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|+.|+++
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL 537 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCCcccccc
Q 004024 619 YAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDV 698 (778)
Q Consensus 619 y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~gy~p~~~~~~~~~ 698 (778)
|++.|+|++|.++++.|+++|++|.||+||||+++++|.|++||.+||+.++||++|++|..+|++.||+||+.+++||+
T Consensus 538 y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~ 617 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDV 617 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhhhhhhHHHHHHHhhhCCCCCCcEEEEecccccCccchhhHHhhhhcCeEEEEecCCcccccCCcccCCCCCC
Q 004024 699 GEEEKEHMLRYHSEKLAVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRLIILRDNNRFHHFSGGSCSCGDYW 778 (778)
Q Consensus 699 ~~~~k~~~l~~hse~la~~~gl~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 778 (778)
+||+||+.|++||||||||||||+||||+||||+||||||+|||+++|||||++||||||||++|||||+||+|||||||
T Consensus 618 ~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 618 DEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred cHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-77 Score=714.61 Aligned_cols=584 Identities=26% Similarity=0.401 Sum_probs=503.0
Q ss_pred HHhHHHHHHhhcCCchhhhHhhhhCCC----CChhhHHHHHHHHHhCCCchHHHHHHhhCC----CCCcchHHHHHHHHH
Q 004024 63 QWNVAITTHMRNGCCDSALHVFNSMPR----RSSVSYNAMISGYLLNGQLDPARQVFDQMP----QRDLVSWNVMISGYV 134 (778)
Q Consensus 63 ~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~ 134 (778)
.++.++..+++.|++++|+.+|+.|.. ++..+|+.++..|.+.+.++.|.++++.+. .++...+|+||.+|+
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~ 132 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFV 132 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 355666667777777777766666543 566667777777777777777777766543 456666777777777
Q ss_pred cCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcc----cCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 004024 135 RNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRML----EKNEISWNGLLAAYVQNGRIEEACMLFES 210 (778)
Q Consensus 135 ~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~d~~t~~~ll~~~~~~g~~~~a~~~~~~ 210 (778)
+.|+++.|+++|++|++||+++||++|.+|++.|++++|+++|++|. .||.+||++++++|+..+++..+.++|..
T Consensus 133 ~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~ 212 (857)
T PLN03077 133 RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212 (857)
T ss_pred hCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHH
Confidence 77777777777777777777777777777777777777777777774 56777777777777777777777777766
Q ss_pred cccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHh
Q 004024 211 KANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQ 290 (778)
Q Consensus 211 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~ 290 (778)
+++.+. .+|+.++|+||.+|+++|++++|.++|++|+.+|+++||+||.+|++
T Consensus 213 ~~~~g~---------------------------~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~ 265 (857)
T PLN03077 213 VVRFGF---------------------------ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFE 265 (857)
T ss_pred HHHcCC---------------------------CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHh
Confidence 666554 57999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHhCCC----CCcchHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHHHHHHHHhcCChhHHHHH
Q 004024 291 NGKVDEARMIFDAMPE----KNTVSWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNTMITGYAQSGEITHARNL 362 (778)
Q Consensus 291 ~g~~~~A~~l~~~m~~----~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~Li~~y~k~g~~~~A~~~ 362 (778)
.|++++|+++|++|.+ ||..||++++.+|++.|+++.|.++|..+. .+|+.+||+||++|+++|++++|.++
T Consensus 266 ~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v 345 (857)
T PLN03077 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999964 699999999999999999999999999998 78999999999999999999999999
Q ss_pred hhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchh
Q 004024 363 FDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCF 442 (778)
Q Consensus 363 f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 442 (778)
|++|.++|+++||+||.+|+++|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..
T Consensus 346 f~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 346 FSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred HhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCc
Q 004024 443 VGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGL 522 (778)
Q Consensus 443 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 522 (778)
++|+||++|+|+|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+++|.+|++.|.
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence 9999999999999999999999999999999999999999999999999999999986 699999999999999999999
Q ss_pred HHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 523 VEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIF 602 (778)
Q Consensus 523 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~ 602 (778)
+++|.+++..|.+. |+.|+..++++|+++|+++|++++|.++|++| +||..+|++|+.+|..+|+.++|.++++++.
T Consensus 505 l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 505 LMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred HHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999876 99999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred hc--CCCCCchHHHHHHHhhhcCCcchHHHHHHHHH-hCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHH
Q 004024 603 EM--EPENAGMYVLLSNLYAASGRWGDVSKVRLKMR-DRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELE 679 (778)
Q Consensus 603 ~l--~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~-~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~ 679 (778)
+. .|+ ..+|..+...|++.|++++|.++++.|+ +.|+.+... |.....|.. .-...+++..
T Consensus 582 ~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~----------~y~~lv~~l-----~r~G~~~eA~ 645 (857)
T PLN03077 582 ESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK----------HYACVVDLL-----GRAGKLTEAY 645 (857)
T ss_pred HcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH----------HHHHHHHHH-----HhCCCHHHHH
Confidence 85 465 4889999999999999999999999998 677755321 100000000 0001356666
Q ss_pred HHHHhCCcccCCCc
Q 004024 680 FKLKQDGFVYSTKL 693 (778)
Q Consensus 680 ~~~~~~gy~p~~~~ 693 (778)
+.+++++..||...
T Consensus 646 ~~~~~m~~~pd~~~ 659 (857)
T PLN03077 646 NFINKMPITPDPAV 659 (857)
T ss_pred HHHHHCCCCCCHHH
Confidence 77777888898753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-65 Score=599.21 Aligned_cols=541 Identities=17% Similarity=0.236 Sum_probs=444.1
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHhhCCCCCcc-----hHHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHHHHHH
Q 004024 121 RDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVV-----SWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAY 195 (778)
Q Consensus 121 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~ 195 (778)
++...|..+++.|++.|++++|+++|++|++++.+ +++.++.+|++.|.+++|..+|+.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45566667777777777777777777777654443 3444555666777777777777777667777777777777
Q ss_pred HhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCC-
Q 004024 196 VQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAP- 274 (778)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~- 274 (778)
++.|++++|.++|+.|.+.++ .||..+||+||.+|+++|++++|.++|++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl---------------------------~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~ 500 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGL---------------------------KADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCC---------------------------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 777777777777766665554 5788888888888888888888888888887
Q ss_pred ---CCCeehHHHHHHHHHhcCChHHHHHHHHhCCC----CCcchHHHHHHHHhccCChHHHHHHHHhhc------ccccc
Q 004024 275 ---VKDVFTWTAMVSGYVQNGKVDEARMIFDAMPE----KNTVSWNAMIAGYVQTKRMDMARELFEAMT------CKNVA 341 (778)
Q Consensus 275 ---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~------~~~~~ 341 (778)
.||.++||+||.+|++.|++++|+++|++|.. ||..||+.+|.+|++.|++++|.++|++|. .||..
T Consensus 501 ~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v 580 (1060)
T PLN03218 501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH
Confidence 46888888888888888888888888888853 588888888888888888888888888885 57899
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhhCCC----CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhc
Q 004024 342 SWNTMITGYAQSGEITHARNLFDRMPQ----HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCA 417 (778)
Q Consensus 342 ~~~~Li~~y~k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~ 417 (778)
+|++||++|+++|++++|.++|++|.+ ++.++||++|.+|++.|++++|+++|++|.+.|+.||.+||++++.+|+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999976 4568999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc----CCChhHHHHHHHHHHHcCChHHHHH
Q 004024 418 NLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV----DKDVISWNTMIAGYARHGFGKDALM 493 (778)
Q Consensus 418 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~Al~ 493 (778)
+.|++++|.++|..|.+.|+.||..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|++
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999994 5999999999999999999999999
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHh----hcC------------
Q 004024 494 LFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLG----RAG------------ 557 (778)
Q Consensus 494 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~----r~g------------ 557 (778)
+|++|.+.|+.||.+||+.++.+|++.|++++|.++|..|.+. |+.||..+|++|++++. +++
T Consensus 741 lf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g 819 (1060)
T PLN03218 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG 819 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 9999999999999999999999999999999999999999876 99999999999998743 332
Q ss_pred -------CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCCCchHHHHHHHhhhcCCc-
Q 004024 558 -------RLDEAQNLMKNM---PFEPDAATWGALLGACRLYGKTELAEKAAEVIFE-MEPENAGMYVLLSNLYAASGRW- 625 (778)
Q Consensus 558 -------~~~eA~~~~~~m---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~-l~p~~~~~y~~L~~~y~~~g~~- 625 (778)
..++|..+|++| ++.||..+|+++++++...+..+.+..+++.+.. -.+.+..+|..|.+.+ |++
T Consensus 820 ~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~ 896 (1060)
T PLN03218 820 RPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYD 896 (1060)
T ss_pred ccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccCh
Confidence 346899999999 7899999999999777778888888777776542 2355668899998877 444
Q ss_pred chHHHHHHHHHhCCCccCCce-eEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCCccccc
Q 004024 626 GDVSKVRLKMRDRGVKKVTGY-SWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHD 697 (778)
Q Consensus 626 ~~a~~~~~~m~~~g~~k~~g~-s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~gy~p~~~~~~~~ 697 (778)
++|..+++.|.+.|+.+.... .| .+.=.+|.|-.|- -.--+...|..+...+...-..|.....+|+
T Consensus 897 ~~A~~l~~em~~~Gi~p~~~~~~~-~~~~d~~~~~~~a----a~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 897 PRAFSLLEEAASLGVVPSVSFKKS-PIVIDAEELPVFA----AEVYLLTILKGLKHRLAAGAKLPNVTILLPT 964 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCcccccC-ceEEEcccCcchh----HHHHHHHHHHHHHHHHhccCcCCcceeeecc
Confidence 589999999999999764431 11 2222445553332 1123456677777776554478888777777
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=593.37 Aligned_cols=499 Identities=16% Similarity=0.244 Sum_probs=452.7
Q ss_pred HHhHHHHHHhhcCCchhhhHhhhhCCCCC-----hhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCC
Q 004024 63 QWNVAITTHMRNGCCDSALHVFNSMPRRS-----SVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNK 137 (778)
Q Consensus 63 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 137 (778)
.+...+..+++.|++++|+++|+.|..++ ..+++.++..|.+.|.+++|..+|+.|+.||.++||.||.+|++.|
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCc
Confidence 34566677889999999999999998754 4466778889999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhhCC----CCCcchHHHHHHHHHcCCChHHHHHHHHhcc----cCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 004024 138 SLSAARNLFEMMP----KRDVVSWNTMLSGYAQNGYADAARRIFDRML----EKNEISWNGLLAAYVQNGRIEEACMLFE 209 (778)
Q Consensus 138 ~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~d~~t~~~ll~~~~~~g~~~~a~~~~~ 209 (778)
++++|+++|+.|. .||+++||+||.+|++.|++++|.++|++|. .||.+||++||.+|++.|++++|.++|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 9999999999996 5899999999999999999999999999998 6899999999999999999999999999
Q ss_pred hccc----CCccHhhHHHHHHHhcCChhHHHHHHhhCC------CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC----
Q 004024 210 SKAN----WEVVSWNSLMGGFVKQKRLGDAKWIFDRMP------VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV---- 275 (778)
Q Consensus 210 ~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~---- 275 (778)
.|.+ +|.++|+.||.+|++.|++++|.++|++|. .||.++|++||.+|+++|++++|.++|++|.+
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 9965 567899999999999999999999999994 68999999999999999999999999999975
Q ss_pred CCeehHHHHHHHHHhcCChHHHHHHHHhCCC----CCcchHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHHHH
Q 004024 276 KDVFTWTAMVSGYVQNGKVDEARMIFDAMPE----KNTVSWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNTMI 347 (778)
Q Consensus 276 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~Li 347 (778)
++..+||++|.+|++.|++++|+++|++|.+ ||..||++++++|++.|++++|.++|+.|. .+|..+|++||
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4679999999999999999999999999975 599999999999999999999999999998 78999999999
Q ss_pred HHHHhcCChhHHHHHhhhCC----CCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHH
Q 004024 348 TGYAQSGEITHARNLFDRMP----QHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLE 423 (778)
Q Consensus 348 ~~y~k~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 423 (778)
++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|+++|++|...|+.||..||++++.+|++.|+++
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999995 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHH----HHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 424 LGKQLHGQLVKVGFEAGCFVGNALLVM----YCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMK 499 (778)
Q Consensus 424 ~a~~i~~~~~~~g~~~~~~~~~~Li~~----y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 499 (778)
.|.++|..|.+.|+.||..+|++|+++ |.++++..++...|+.+...+...|+ ++|+.+|++|+
T Consensus 772 ~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~Al~lf~eM~ 839 (1060)
T PLN03218 772 VGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SWALMVYRETI 839 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HHHHHHHHHHH
Confidence 999999999999999999999999987 45566666665666555445555565 45999999999
Q ss_pred HCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHH
Q 004024 500 TVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM---PFEPDAA 576 (778)
Q Consensus 500 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~~~ 576 (778)
+.|+.||.+||+.+|.++...+.++.+..+++.|... +..|+..+|+++++++++. .++|..++++| ++.|+..
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999999997777778888887777777544 6777889999999998543 47899999998 6777754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-64 Score=587.83 Aligned_cols=449 Identities=21% Similarity=0.344 Sum_probs=391.0
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHhhCC-----CCCcchHHHHHHHHHcCCChhHHHHHHhhCC----CCCcchHHHH
Q 004024 90 RSSVSYNAMISGYLLNGQLDPARQVFDQMP-----QRDLVSWNVMISGYVRNKSLSAARNLFEMMP----KRDVVSWNTM 160 (778)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~~~l 160 (778)
.+..+|+.+|..|.+.|++++|.++|+.|. .||..+|+.++.+|++.++++.|.+++..|. .||+++||+|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455567777777777777777777777664 3566777777777777777777777777664 4677777777
Q ss_pred HHHHHcCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHHHHHHHHHhcccC----CccHhhHHHHHHHhcCChhHHH
Q 004024 161 LSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANW----EVVSWNSLMGGFVKQKRLGDAK 236 (778)
Q Consensus 161 i~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~ 236 (778)
+++|++.|++++|.++|++|..||.++|++++.+|++.|++++|.++|++|.+. +..+|+.++.++++.|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 777777777777777777777777777777777777777777777777777543 4457777777777777777777
Q ss_pred HHHhhCC----CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCC----CCC
Q 004024 237 WIFDRMP----VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMP----EKN 308 (778)
Q Consensus 237 ~~~~~m~----~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~~ 308 (778)
+++..+. .+|..+||+||++|+++|++++|.++|++|+.+|+++||+||.+|+++|++++|+++|++|. .||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 7766654 67999999999999999999999999999999999999999999999999999999999995 469
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhc
Q 004024 309 TVSWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQS 384 (778)
Q Consensus 309 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~ 384 (778)
..||++++.+|++.|++++|+++|..|. .+|..++|+||++|+|+|++++|.++|++|.++|+++||+||.+|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 9999999999999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004024 385 GYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVK-VGFEAGCFVGNALLVMYCKCGSVEEAYHA 463 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 463 (778)
|+.++|+++|++|.+.|+.||.+||+++|.+|++.|.+++|.++|..|.+ .|+.|+..+|+++|++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999976 69999999999999999999999999999
Q ss_pred HHhcc-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC
Q 004024 464 FEEIV-DKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP 541 (778)
Q Consensus 464 f~~m~-~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 541 (778)
|++|. .||..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.++..|++.|++++|.++++.|.+. |+.+
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 99996 48999999999999999999999999999975 6775 468999999999999999999999999876 7653
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=297.88 Aligned_cols=106 Identities=63% Similarity=1.030 Sum_probs=100.2
Q ss_pred ceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCCccccccchhhH--------hhhhhhhhHHHHH
Q 004024 645 GYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEK--------EHMLRYHSEKLAV 716 (778)
Q Consensus 645 g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~gy~p~~~~~~~~~~~~~k--------~~~l~~hse~la~ 716 (778)
||||+++ |.|++||.+||+. ++..++...||.|++..++||++++++ +..+++|||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 8999988 9999999999988 566678889999999999999998877 6799999999999
Q ss_pred HHhhhCCCCCCcEEEEecc-cccCccchhhHHhhhhcCeEEEEecCCcccccC
Q 004024 717 AYGILSIPAGRPIRVMKNL-RVCEDCHNAIKHISKIVGRLIILRDNNRFHHFS 768 (778)
Q Consensus 717 ~~gl~~~~~~~~i~i~knl-r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~ 768 (778)
|||||+| ||+||+ |||+|||+|+|+||+++||+|||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=339.10 Aligned_cols=564 Identities=13% Similarity=0.082 Sum_probs=405.4
Q ss_pred HHhhcCCchhhhHhhhhCCCCCh---hhHHHHHHHHHhCCCchHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhHHH
Q 004024 70 THMRNGCCDSALHVFNSMPRRSS---VSYNAMISGYLLNGQLDPARQVFDQMP---QRDLVSWNVMISGYVRNKSLSAAR 143 (778)
Q Consensus 70 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 143 (778)
.+...|++++|+..|+.....++ ..+..+...+...|++++|...|+.+. ..+...+..+...+.+.|++++|.
T Consensus 270 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence 34567888888877776654322 233444556777788888888887765 234556677777788888888888
Q ss_pred HHHhhCCC---CCcchHHHHHHHHHcCCChHHHHHHHHhcc---cCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCC--
Q 004024 144 NLFEMMPK---RDVVSWNTMLSGYAQNGYADAARRIFDRML---EKNEISWNGLLAAYVQNGRIEEACMLFESKANWE-- 215 (778)
Q Consensus 144 ~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-- 215 (778)
..+..+.. .+...++.+...|.+.|++++|.++|+++. +.+...+..+...+...|+.++|.+.+..+.+.+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 429 (899)
T TIGR02917 350 ATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc
Confidence 88877653 345677778888888888888888888776 2345566777777778888888888887776543
Q ss_pred -ccHhhHHHHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC---CCeehHHHHHHHH
Q 004024 216 -VVSWNSLMGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV---KDVFTWTAMVSGY 288 (778)
Q Consensus 216 -~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~ 288 (778)
......++..|.+.|++++|.++++.+. +.+..+|+.+...|...|++++|...|+++.. .+...+..+...+
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 509 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARID 509 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 2355667777788888888888887775 44666778888888888888888888877642 2445667777777
Q ss_pred HhcCChHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHH
Q 004024 289 VQNGKVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNL 362 (778)
Q Consensus 289 ~~~g~~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~ 362 (778)
...|++++|.+.|+++... +..++..+...+...|+.++|...+..+. +.+...+..++..|.+.|++++|..+
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888777542 56677777777777888888888887776 45556677777888888888888888
Q ss_pred hhhCCC---CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCC
Q 004024 363 FDRMPQ---HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEA 439 (778)
Q Consensus 363 f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 439 (778)
++++.+ .+...|..+...|.+.|++++|+..|+++.... +.+...+..+...+...|+.++|..++..+.+.. +.
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 667 (899)
T TIGR02917 590 LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PD 667 (899)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 877653 344667777788888888888888888776543 2233445566666777788888888887777653 44
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSA 516 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a 516 (778)
+...+..++..+.+.|++++|.++++.+.+ .+...|..+...+...|++++|++.|+++.. ..|+..++..+..+
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 745 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--RAPSSQNAIKLHRA 745 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCchHHHHHHHH
Confidence 566777777888888888888888877754 3556677777777788888888888888777 44665667777777
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHH
Q 004024 517 CSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFE-PDAATWGALLGACRLYGKTELA 594 (778)
Q Consensus 517 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~~~~~Ll~a~~~~g~~~~a 594 (778)
+.+.|+.++|.+.++.+.+. .+.+...+..+..+|.+.|++++|.+.++++ ... +++.++..+...+...|+ +.|
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A 822 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRA 822 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHH
Confidence 77788888888777777653 2345667777777777788888888777776 223 346677777777777777 667
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCC
Q 004024 595 EKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 595 ~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~ 640 (778)
...+++++++.|+++..+..++.+|...|++++|.++++.+.+.+.
T Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 823 LEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 7777777777777777777777777777777777777777776554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=336.47 Aligned_cols=564 Identities=13% Similarity=0.057 Sum_probs=341.1
Q ss_pred HHHHHhhcCCchhhhHhhhhCCC---CChhhHHHHHHHHHhCCCchHHHHHHhhCCC--CC-cchHHHHHHHHHcCCChh
Q 004024 67 AITTHMRNGCCDSALHVFNSMPR---RSSVSYNAMISGYLLNGQLDPARQVFDQMPQ--RD-LVSWNVMISGYVRNKSLS 140 (778)
Q Consensus 67 ~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~ 140 (778)
....+...|++++|...++.... .+...+......+...|++++|...|+.+.. |+ ...+..+...+...|+++
T Consensus 233 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~ 312 (899)
T TIGR02917 233 LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH
Confidence 34455566666666655554432 1222222333344456666667666666542 22 223333444556666777
Q ss_pred HHHHHHhhCCC---CCcchHHHHHHHHHcCCChHHHHHHHHhcc---cCCcchHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 004024 141 AARNLFEMMPK---RDVVSWNTMLSGYAQNGYADAARRIFDRML---EKNEISWNGLLAAYVQNGRIEEACMLFESKANW 214 (778)
Q Consensus 141 ~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 214 (778)
+|...|++..+ .+...+..+...+.+.|++++|...+..+. +.+...+..+...+.+.|++++|.++|+++.+.
T Consensus 313 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 392 (899)
T TIGR02917 313 QAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL 392 (899)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77666665542 234455566666666777777776666665 224455666666666667777777666665543
Q ss_pred C---ccHhhHHHHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC---CCeehHHHHH
Q 004024 215 E---VVSWNSLMGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV---KDVFTWTAMV 285 (778)
Q Consensus 215 ~---~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li 285 (778)
+ ...+..+...+...|++++|.+.|+.+. +.+...+..++..|.+.|++++|..+++++.. .+..+|+.+.
T Consensus 393 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 472 (899)
T TIGR02917 393 DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLG 472 (899)
T ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 2 3345566666666677776666666554 22334455566666666777777666666542 2445666666
Q ss_pred HHHHhcCChHHHHHHHHhCCC--C-CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHH
Q 004024 286 SGYVQNGKVDEARMIFDAMPE--K-NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHA 359 (778)
Q Consensus 286 ~~~~~~g~~~~A~~l~~~m~~--~-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A 359 (778)
..|...|++++|...|+++.+ | +...+..+...+...|++++|.+.+..+. +.+..++..+...|.+.|+.++|
T Consensus 473 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 473 AIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHH
Confidence 666667777777776666543 2 44455566666666677777776666665 44555666666666667777777
Q ss_pred HHHhhhCCC---CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcC
Q 004024 360 RNLFDRMPQ---HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVG 436 (778)
Q Consensus 360 ~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 436 (778)
...|+++.+ .+...+..++..|.+.|++++|+.+++++.... +.+..++..+...+...|++++|...+..+.+..
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 553 VAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 766666543 233455566666666677777777776665432 3344455566666666677777776666666543
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHH
Q 004024 437 FEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGI 513 (778)
Q Consensus 437 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~l 513 (778)
+.+...+..+...|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|.++++.+.+.+ .++...+..+
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 709 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELE 709 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHH
Confidence 33455566666666667777777776666543 245566666666666777777777776666643 2344455556
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCh
Q 004024 514 LSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFE-PDAATWGALLGACRLYGKT 591 (778)
Q Consensus 514 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~~~~~Ll~a~~~~g~~ 591 (778)
...+...|++++|.+.|..+.. ..|+...+..+..++.+.|++++|.+.++++ ... .+..++..+...|...|+.
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 6666666777777776666653 2344455666666666677777776666655 222 2355666666666666777
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 592 ELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 592 ~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+.|...++++++..|+++..+..++++|...|+ ++|.++++.+.+
T Consensus 787 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 777777777776667666666666777776666 666666665544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-22 Score=247.62 Aligned_cols=407 Identities=11% Similarity=0.058 Sum_probs=312.2
Q ss_pred HHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC--CCe---ehHHHH----------
Q 004024 223 MGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV--KDV---FTWTAM---------- 284 (778)
Q Consensus 223 i~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~---~~~~~l---------- 284 (778)
...+...|++++|...|++.. +.|...+..|...|.+.|++++|...|++..+ |+. ..|..+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 455677899999999998875 44777888899999999999999999987654 221 123222
Q ss_pred --HHHHHhcCChHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCCh
Q 004024 285 --VSGYVQNGKVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEI 356 (778)
Q Consensus 285 --i~~~~~~g~~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~ 356 (778)
...+.+.|++++|+..|++.... +...+..+...+...|++++|.+.++.+. +.+...+..+...|. .++.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCH
Confidence 34567889999999999888753 56677788888999999999999999888 445556777777775 4578
Q ss_pred hHHHHHhhhCCCCC------------eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcc-cccchHHHhcccccHH
Q 004024 357 THARNLFDRMPQHD------------CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRS-PFTSVLSTCANLASLE 423 (778)
Q Consensus 357 ~~A~~~f~~m~~~d------------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~ 423 (778)
++|...++.+.... ...+..+...+...|++++|++.|++..+. .|+.. .+..+...+...|+.+
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 88988888775421 123445667788899999999999999874 46543 4455667788999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC----Chh---------HHHHHHHHHHHcCChHH
Q 004024 424 LGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDK----DVI---------SWNTMIAGYARHGFGKD 490 (778)
Q Consensus 424 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~----d~~---------~~~~li~~~~~~g~~~~ 490 (778)
+|...++.+++.. +.+.....++...+.+.|+.++|...++.+... +.. .+..+...+...|+.++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 9999999988754 345555555666778899999999999988642 111 12345667888999999
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004024 491 ALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 491 Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m 569 (778)
|+++++. ..++...+..+...+...|+.++|...|+...+. .| +...+..++.+|...|++++|++.++..
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999872 2334456677788899999999999999998763 45 5778889999999999999999999987
Q ss_pred C-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc------hHHHHHHHhhhcCCcchHHHHHHHH-HhCCC
Q 004024 570 P-FEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG------MYVLLSNLYAASGRWGDVSKVRLKM-RDRGV 640 (778)
Q Consensus 570 ~-~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~------~y~~L~~~y~~~g~~~~a~~~~~~m-~~~g~ 640 (778)
+ ..|+ ..++..+..++...|+.++|...++++++..|+++. .+..++.++...|++++|.+.++.. ...|+
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 4 4554 567788888889999999999999999998876553 5667799999999999999986665 44455
Q ss_pred c
Q 004024 641 K 641 (778)
Q Consensus 641 ~ 641 (778)
.
T Consensus 744 ~ 744 (1157)
T PRK11447 744 T 744 (1157)
T ss_pred C
Confidence 3
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-22 Score=242.86 Aligned_cols=564 Identities=11% Similarity=0.061 Sum_probs=418.3
Q ss_pred HHHHhhcCCchhhhHhhhhCCC---CChhhHHHHHHHHHhCCCchHHHHHHhhCCC--CCcch-----------------
Q 004024 68 ITTHMRNGCCDSALHVFNSMPR---RSSVSYNAMISGYLLNGQLDPARQVFDQMPQ--RDLVS----------------- 125 (778)
Q Consensus 68 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~----------------- 125 (778)
.......++.+.|.+.+.+... .|+.++..++..+.+.|+.++|.+.+++..+ |+...
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~ 114 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQ 114 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhh
Confidence 3445677889988877776543 4677888899999999999999999999863 33321
Q ss_pred HHHHHHHHHcCCChhHHHHHHhhCCCCCc--chHH--HHHHHHHcCCChHHHHHHHHhcc--cC-CcchHHHHHHHHHhc
Q 004024 126 WNVMISGYVRNKSLSAARNLFEMMPKRDV--VSWN--TMLSGYAQNGYADAARRIFDRML--EK-NEISWNGLLAAYVQN 198 (778)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~f~~m~~~d~--~~~~--~li~~~~~~g~~~~A~~~~~~m~--~~-d~~t~~~ll~~~~~~ 198 (778)
.-.+...+.+.|++++|.+.|+...+.++ .... .........|+.++|+..|+++. .| +...+..+...+...
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Confidence 13334568899999999999999874322 2111 11122234699999999999998 24 456788888999999
Q ss_pred CCHHHHHHHHHhcccCCccH-----------------------hhHHHHHHHhcCChhHHHHHHhhCC--CCChh-HHHH
Q 004024 199 GRIEEACMLFESKANWEVVS-----------------------WNSLMGGFVKQKRLGDAKWIFDRMP--VRDEV-SWNT 252 (778)
Q Consensus 199 g~~~~a~~~~~~~~~~~~~~-----------------------~~~li~~~~~~g~~~~A~~~~~~m~--~~d~~-~~~~ 252 (778)
|+.++|++.++++.+..... +...+..+-.....+.|...+..+. ..|+. ....
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 99999999999886543211 1111111112223444555554432 11221 1224
Q ss_pred HHHHHhcCCCHHHHHHHHhhCCC--C-CeehHHHHHHHHHhcCChHHHHHHHHhCCCC--Cc---chH------------
Q 004024 253 MITGYAQNNYLAEAQRLFEEAPV--K-DVFTWTAMVSGYVQNGKVDEARMIFDAMPEK--NT---VSW------------ 312 (778)
Q Consensus 253 li~~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~---~t~------------ 312 (778)
+...+...|++++|...|++... | |...+..|...|.+.|++++|+..|++..+. +. ..+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 45677889999999999998764 3 6678999999999999999999999998753 21 111
Q ss_pred HHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCC---CeeehhhHHHHHHhcCC
Q 004024 313 NAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQH---DCISWAAIIAGYAQSGY 386 (778)
Q Consensus 313 ~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~ 386 (778)
......+.+.|++++|...+.++. +.+...+..|...|.+.|++++|++.|++..+. +...+..+...|. .++
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence 122456778999999999999998 556677888999999999999999999998753 3345666666664 467
Q ss_pred hhHHHHHHHHHhhcCccc--------CcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 004024 387 SEDSLRLFIEMKRYGERL--------NRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVE 458 (778)
Q Consensus 387 ~~~Al~l~~~m~~~g~~p--------d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 458 (778)
.++|+.+++.+....... ....+......+...|++++|.+.+..+++.. +.+..++..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 899999988764331110 01123334455677899999999999998865 446778888999999999999
Q ss_pred HHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh---------HHHHHHHHHhccCcHHHH
Q 004024 459 EAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI---------TMVGILSACSHTGLVEKG 526 (778)
Q Consensus 459 ~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~---------t~~~ll~a~~~~g~~~~a 526 (778)
+|...|+++.+ | +...+..+...+...|+.++|+..++++......++.. .+......+...|+.++|
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 99999998854 3 55566666666778999999999998865432222221 133456678899999999
Q ss_pred HHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 527 TEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
..+++. ..++...+..+.+.+.+.|++++|++.+++. ...|+ +..+..+...+...|+.+.|+..++++.+.
T Consensus 593 ~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999872 2345667788999999999999999999887 45564 678999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 605 EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 605 ~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
.|+++..+..++.+|...|++++|.++++.+....
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999887643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-20 Score=217.54 Aligned_cols=550 Identities=12% Similarity=0.042 Sum_probs=357.9
Q ss_pred HhhcCCchhhhHhhhhCCC---CChhhHHHHHHHHHhCCCchHHHHHHhhCCC--CCcchHHHHHHHHHcCCChhHHHHH
Q 004024 71 HMRNGCCDSALHVFNSMPR---RSSVSYNAMISGYLLNGQLDPARQVFDQMPQ--RDLVSWNVMISGYVRNKSLSAARNL 145 (778)
Q Consensus 71 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 145 (778)
+...|++++|+..|+.... .+..++..|...|.+.|+.++|+..+++... |+-..+..++..+ +++++|..+
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 3455999999988887654 3467889999999999999999999999874 4333333333333 899999999
Q ss_pred HhhCCC--C-CcchHHHHHHH--------HHcCCChHHHHHHHHhcccCC--cchHHHH-HHHHHhcCCHHHHHHHHHhc
Q 004024 146 FEMMPK--R-DVVSWNTMLSG--------YAQNGYADAARRIFDRMLEKN--EISWNGL-LAAYVQNGRIEEACMLFESK 211 (778)
Q Consensus 146 f~~m~~--~-d~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~d--~~t~~~l-l~~~~~~g~~~~a~~~~~~~ 211 (778)
|+++.. | +..++..+... |.+.+...+++. .+...|+ ..+.... ...|.+.|++++|++++.++
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999863 3 33444444444 888877777777 4444443 4444444 88999999999999999999
Q ss_pred ccCCcc---HhhHHHHHHHh-cCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC-----CCeehH-
Q 004024 212 ANWEVV---SWNSLMGGFVK-QKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV-----KDVFTW- 281 (778)
Q Consensus 212 ~~~~~~---~~~~li~~~~~-~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~d~~~~- 281 (778)
.+.++. -...|...|.. .++ +.+..++......|+..+.+++..|.+.|+.++|.+++++++. |+..+|
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 987543 35567778887 477 8888888765567899999999999999999999999998763 211222
Q ss_pred -----------------------------HHHHHHHHhcCChHHHHHHHHhCCC--------------------------
Q 004024 282 -----------------------------TAMVSGYVQNGKVDEARMIFDAMPE-------------------------- 306 (778)
Q Consensus 282 -----------------------------~~li~~~~~~g~~~~A~~l~~~m~~-------------------------- 306 (778)
-.++..+.+.++++-+.++...-..
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence 1224556666777666555321110
Q ss_pred -----C-CcchHHHHHHHHhccCChHHHHHHHHhhcc--c----cccHHHHHHHHHHhcCChhHHHHHh-----------
Q 004024 307 -----K-NTVSWNAMIAGYVQTKRMDMARELFEAMTC--K----NVASWNTMITGYAQSGEITHARNLF----------- 363 (778)
Q Consensus 307 -----~-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~--~----~~~~~~~Li~~y~k~g~~~~A~~~f----------- 363 (778)
| +.....-+.-...+.|+.++|.+++....+ . +....+-|+..|.+.+.+....++.
T Consensus 368 ~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (987)
T PRK09782 368 LYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ 447 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence 0 111111111223455677777777777662 1 2224446677777766522222221
Q ss_pred ----h-------------hCCC---C--CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhccccc
Q 004024 364 ----D-------------RMPQ---H--DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLAS 421 (778)
Q Consensus 364 ----~-------------~m~~---~--d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 421 (778)
. .... . +...|..+...+.. +++++|+..|.+.... .|+......+..++...|+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr 524 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVED 524 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCC
Confidence 1 1110 1 23345555555555 6777777766666543 3554433333334456777
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHH---HHHHHcCChHHHHHHHHHH
Q 004024 422 LELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMI---AGYARHGFGKDALMLFESM 498 (778)
Q Consensus 422 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~Al~l~~~m 498 (778)
+++|...+..+... +|+......+...+.+.|++++|...|++..+.++..++... ......|++++|+..|++.
T Consensus 525 ~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 525 YATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 77777777776443 233334455566677777887777777776553333333222 2233347788888887777
Q ss_pred HHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-H
Q 004024 499 KTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-A 575 (778)
Q Consensus 499 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~ 575 (778)
.+ +.|+...+..+..++.+.|+.++|...|..... +.| +...+..+...+...|++++|++.+++. ...|+ +
T Consensus 603 L~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 603 LN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 76 567766777777777777888888877777664 344 4556666777777778888887777765 34453 5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
..|..+..++...|+++.|+..++++++++|+++......+++.....+++.+.+-+++.-
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 5777777777777888888888888888888777777777777777777777776555443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-18 Score=204.24 Aligned_cols=522 Identities=11% Similarity=0.041 Sum_probs=371.4
Q ss_pred HhCCCchHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhHHHHHHhhCCC--CCcchHHHHHHHHHcCCChHHHHHHH
Q 004024 103 LLNGQLDPARQVFDQMP---QRDLVSWNVMISGYVRNKSLSAARNLFEMMPK--RDVVSWNTMLSGYAQNGYADAARRIF 177 (778)
Q Consensus 103 ~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~ 177 (778)
...|++++|+..|++.. +.+..++..|...|.+.|++++|+..+++..+ |+-..+..++..+ ++.++|..++
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 34499999999999886 23567889999999999999999999998864 3323333333323 9999999999
Q ss_pred Hhcc--cC-CcchHHHHHHH--------HHhcCCHHHHHHHHHhcccCC--cc-HhhHHHHHHHhcCChhHHHHHHhhCC
Q 004024 178 DRML--EK-NEISWNGLLAA--------YVQNGRIEEACMLFESKANWE--VV-SWNSLMGGFVKQKRLGDAKWIFDRMP 243 (778)
Q Consensus 178 ~~m~--~~-d~~t~~~ll~~--------~~~~g~~~~a~~~~~~~~~~~--~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 243 (778)
+++. .| +..++..+... |.+.+...++++ .+...++ .. ..-.+...|.+.|++++|.+++.++.
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9998 44 34455555554 777766666666 3333333 33 34445899999999999999999987
Q ss_pred C---CChhHHHHHHHHHhcC-CCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCC-----CCcch---
Q 004024 244 V---RDEVSWNTMITGYAQN-NYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPE-----KNTVS--- 311 (778)
Q Consensus 244 ~---~d~~~~~~li~~y~~~-g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~t--- 311 (778)
+ .+..-...|...|.+. ++ +++..+++...+.|...+..+...|.+.|+.++|..+++++.. |...+
T Consensus 210 k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 210 QQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 3 3444566777788883 77 9999998865566888999999999999999999999999863 11111
Q ss_pred ---------------------------HHHHHHHHhccCChHHHHHHHHhhc----------------------------
Q 004024 312 ---------------------------WNAMIAGYVQTKRMDMARELFEAMT---------------------------- 336 (778)
Q Consensus 312 ---------------------------~~~ll~~~~~~~~~~~a~~i~~~~~---------------------------- 336 (778)
...++..+.+.+.++.+.++...-.
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 368 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLL 368 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence 1122445555666665555532111
Q ss_pred ----cccccHHHHHHHHHHhcCChhHHHHHhhhCCC--CCe----eehhhHHHHHHhcCC---hhHHHHHHH--------
Q 004024 337 ----CKNVASWNTMITGYAQSGEITHARNLFDRMPQ--HDC----ISWAAIIAGYAQSGY---SEDSLRLFI-------- 395 (778)
Q Consensus 337 ----~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~----~~~~~li~~~~~~g~---~~~Al~l~~-------- 395 (778)
+.+....--+.-...+.|+.++|.++|..... ++. ..-+-++..|..++. ..+++.+-+
T Consensus 369 y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 369 YQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 01122222223334567888888888887754 222 123356667777666 444444411
Q ss_pred ----HH----------hh-cCcccC--cc-cccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 004024 396 ----EM----------KR-YGERLN--RS-PFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSV 457 (778)
Q Consensus 396 ----~m----------~~-~g~~pd--~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 457 (778)
+. .. .+..|+ .. .+..+ ..|...+..++|...+....... |+......+...+...|++
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~L-G~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRL-AKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHH-HHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCH
Confidence 11 11 012233 22 22222 33333478888888777666543 4444444445556789999
Q ss_pred HHHHHHHHhccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccCcHHHHHHHHHHch
Q 004024 458 EEAYHAFEEIVD--KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDIT-MVGILSACSHTGLVEKGTEYFYSMN 534 (778)
Q Consensus 458 ~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~ 534 (778)
++|...|+++.. ++...|..+...+.+.|+.++|...|++..+. .|+... +..+.......|+.++|...++...
T Consensus 526 eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 526 ATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999998754 45566777888899999999999999999884 465543 3334445566799999999999887
Q ss_pred hhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 004024 535 RDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMY 612 (778)
Q Consensus 535 ~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y 612 (778)
.+.|+...|..+..++.+.|+.++|++.+++. ...|+ ...+..+..++...|+.+.|+..++++++++|+++..+
T Consensus 604 ---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~ 680 (987)
T PRK09782 604 ---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALI 680 (987)
T ss_pred ---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 45678889999999999999999999999887 56676 56788888899999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 613 VLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 613 ~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
..++.+|...|+.++|...++...+.
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999998877653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=187.00 Aligned_cols=343 Identities=14% Similarity=0.160 Sum_probs=221.4
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCe--ehHH-HHHHHHHhcCChHHHHHHHHhCCCC---CcchHHHHHHHHh
Q 004024 247 EVSWNTMITGYAQNNYLAEAQRLFEEAPVKDV--FTWT-AMVSGYVQNGKVDEARMIFDAMPEK---NTVSWNAMIAGYV 320 (778)
Q Consensus 247 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~--~~~~-~li~~~~~~g~~~~A~~l~~~m~~~---~~~t~~~ll~~~~ 320 (778)
+..|.-+..+|...|+.+.|...|.+..+-|+ +... -+....-..|+.++|...|.+..+. -.+.|+.|...+-
T Consensus 150 ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~ 229 (966)
T KOG4626|consen 150 IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFN 229 (966)
T ss_pred hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHh
Confidence 34455555555555555555555544443222 2111 1222222345555555555444332 2344555555555
Q ss_pred ccCChHHHHHHHHhhcccc---ccHHHHHHHHHHhcCChhHHHHHhhhCCC--C-CeeehhhHHHHHHhcCChhHHHHHH
Q 004024 321 QTKRMDMARELFEAMTCKN---VASWNTMITGYAQSGEITHARNLFDRMPQ--H-DCISWAAIIAGYAQSGYSEDSLRLF 394 (778)
Q Consensus 321 ~~~~~~~a~~i~~~~~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~ 394 (778)
..|++..|.+-|++++..| ...|-.|.+.|...+.++.|...+.+... | ..+.+..|...|-.+|..+-|+..|
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHH
Confidence 5555555555555555211 23344444455555555555444443321 1 2233444444444444444444444
Q ss_pred HHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-C
Q 004024 395 IEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-D 471 (778)
Q Consensus 395 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d 471 (778)
++.. ... +.-...|+.|.+++-..|++.+|.+.+.+... | -
T Consensus 310 kral-----------------------------------~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h 353 (966)
T KOG4626|consen 310 KRAL-----------------------------------ELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH 353 (966)
T ss_pred HHHH-----------------------------------hcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc
Confidence 4443 322 22345667777777777888888888777654 2 3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC-hHHHHHH
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN-SKHYTCM 549 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 549 (778)
..+.+.|...|...|..++|..+|....+ +.|.- ..++.+...+-+.|++++|+..+++.. .|.|+ .+.|+.|
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~Nm 428 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNM 428 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhc
Confidence 45677788888888888888888888777 77764 467788888888888888888888775 67786 6789999
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcch
Q 004024 550 VDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGD 627 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~ 627 (778)
...|-..|+.+.|.+.+.+. .+.|. +...+.|.+.++..||+.+|+..++.+++++|+.+.+|-.|.-...--.+|.+
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999998876 67787 56889999999999999999999999999999999999998888877788887
Q ss_pred HHH
Q 004024 628 VSK 630 (778)
Q Consensus 628 a~~ 630 (778)
-.+
T Consensus 509 ~d~ 511 (966)
T KOG4626|consen 509 YDK 511 (966)
T ss_pred hHH
Confidence 433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-18 Score=185.53 Aligned_cols=263 Identities=14% Similarity=0.122 Sum_probs=172.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhhCCCCC-------eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHH
Q 004024 342 SWNTMITGYAQSGEITHARNLFDRMPQHD-------CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLS 414 (778)
Q Consensus 342 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~d-------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~ 414 (778)
++..+...|.+.|++++|..+++.+.... ...|..+...|.+.|++++|+.+|.++.+..
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~------------- 137 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG------------- 137 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-------------
Confidence 34444444444555555555444443211 1234455555566666666666666555421
Q ss_pred HhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC--------hhHHHHHHHHHHHcC
Q 004024 415 TCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKD--------VISWNTMIAGYARHG 486 (778)
Q Consensus 415 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d--------~~~~~~li~~~~~~g 486 (778)
+.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+...|
T Consensus 138 -----------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 138 -----------------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred -----------------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 2334455566666666666666666666664321 113445666667777
Q ss_pred ChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC--hHHHHHHHHHHhhcCCHHHHH
Q 004024 487 FGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN--SKHYTCMVDLLGRAGRLDEAQ 563 (778)
Q Consensus 487 ~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~g~~~eA~ 563 (778)
+.++|+..|+++.+ ..|+. ..+..+...+...|++++|.++|+.+... .|+ ...+..++.+|.+.|++++|.
T Consensus 195 ~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 195 DLDAARALLKKALA--ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred CHHHHHHHHHHHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776 34543 35556666777777777777777777643 233 355677888888888888888
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhh---cCCcchHHHHHHHHHhCC
Q 004024 564 NLMKNM-PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAA---SGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 564 ~~~~~m-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~---~g~~~~a~~~~~~m~~~g 639 (778)
+.++++ ...|+...+..+...+...|+.+.|...++++++..|++.. +..+...+.. .|+.+++..+++.|.+++
T Consensus 270 ~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 270 EFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 888876 45677666778888888999999999999999999998854 4444444432 568999999999999999
Q ss_pred CccCCce
Q 004024 640 VKKVTGY 646 (778)
Q Consensus 640 ~~k~~g~ 646 (778)
+++.|..
T Consensus 349 ~~~~p~~ 355 (389)
T PRK11788 349 LKRKPRY 355 (389)
T ss_pred HhCCCCE
Confidence 9988883
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7e-18 Score=176.06 Aligned_cols=408 Identities=13% Similarity=0.150 Sum_probs=307.2
Q ss_pred HHHHHHhcCChhHHHHHHhhCCCCC---hhHHHHHHHHHhcCCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChH
Q 004024 222 LMGGFVKQKRLGDAKWIFDRMPVRD---EVSWNTMITGYAQNNYLAEAQRLFEEAPVK---DVFTWTAMVSGYVQNGKVD 295 (778)
Q Consensus 222 li~~~~~~g~~~~A~~~~~~m~~~d---~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~ 295 (778)
|..-..+.|++++|++--...-..| ....-.+-.++.+..+++....--....+. -..+|..+...+-..|+++
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~ 133 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQ 133 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHH
Confidence 3334445566666665444332111 111122234455555555433322222222 2356777888888888888
Q ss_pred HHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHHHHHhhccccc---cHHHHHHHHHHhcCChhHHHHHhhhCCC-
Q 004024 296 EARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFEAMTCKNV---ASWNTMITGYAQSGEITHARNLFDRMPQ- 368 (778)
Q Consensus 296 ~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~---~~~~~Li~~y~k~g~~~~A~~~f~~m~~- 368 (778)
+|+.+++.|.+. ....|..+..++...|+.+.|.+.|.+.+.-|+ -+.+-+.+.....|++++|...+-+..+
T Consensus 134 ~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~ 213 (966)
T KOG4626|consen 134 DALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET 213 (966)
T ss_pred HHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh
Confidence 888888888753 667888888888888888888888888873332 3344456666778888888888877654
Q ss_pred -CC-eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCc-ccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHH
Q 004024 369 -HD-CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNR-SPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGN 445 (778)
Q Consensus 369 -~d-~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 445 (778)
|. .+.|+.|...+-.+|+..+|+..|.+... +.|+- ..|..+-..+...+.++.|...+..+.... +....++.
T Consensus 214 qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~g 290 (966)
T KOG4626|consen 214 QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHG 290 (966)
T ss_pred CCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhhcc
Confidence 33 37899999999999999999999998875 44542 234444445555555666665555554432 33456666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccC
Q 004024 446 ALLVMYCKCGSVEEAYHAFEEIVD--KD-VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTG 521 (778)
Q Consensus 446 ~Li~~y~k~g~~~~A~~~f~~m~~--~d-~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g 521 (778)
.|.-.|-..|.+|-|+..+++..+ |+ ...||.|..++-..|+..+|.+.+.+... +.|+. ...+.+..++...|
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQG 368 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhc
Confidence 677788899999999999999866 43 56899999999999999999999999988 78875 47889999999999
Q ss_pred cHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHH
Q 004024 522 LVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAA 598 (778)
Q Consensus 522 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~ 598 (778)
.+++|..+|.... .+.|. ....+.|..+|-..|++++|..-+++. .++|+ +..++.+...+...|+++.|...+
T Consensus 369 ~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 369 KIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred cchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 9999999998875 45564 566888999999999999999999887 78998 569999999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 599 EVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 599 ~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.+++..+|.-+.++..|+.+|-.+|+..+|..-++...+
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 999999999999999999999999999999988776654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-17 Score=186.48 Aligned_cols=247 Identities=13% Similarity=0.067 Sum_probs=191.0
Q ss_pred CChhHHHHHHHHHhhcC-cccCc-ccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004024 385 GYSEDSLRLFIEMKRYG-ERLNR-SPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYH 462 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g-~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 462 (778)
+++++|++.|++....+ ..|+. ..+..+...+...|++++|...+..+++.. +.+...+..+...|...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 56777777777776654 22332 233444444556777777777777776653 3345577778888999999999999
Q ss_pred HHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcC
Q 004024 463 AFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYG 538 (778)
Q Consensus 463 ~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 538 (778)
.|++..+ .+...|..+...|...|++++|+..|++..+ +.|+. ..+..+..++...|+.++|...|+...+.
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 462 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-- 462 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 9998754 3577899999999999999999999999988 66764 45667777888999999999999998753
Q ss_pred CCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 539 VIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDA-------A-TWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 539 ~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-------~-~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
.| +...|..+..+|...|++++|.+.+++. .+.|+. . .++..+..+...|++++|+..++++++++|++
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 34 4678889999999999999999999885 344431 1 12222223344699999999999999999999
Q ss_pred CchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 609 AGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 609 ~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
...+..|+.+|...|++++|.+.++...+
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 98999999999999999999999888765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=188.61 Aligned_cols=268 Identities=12% Similarity=0.142 Sum_probs=146.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhhCCCCC-------eehHHHHHHHHHhcCChHHHHHHHHhCCCC---CcchHHHHHHH
Q 004024 249 SWNTMITGYAQNNYLAEAQRLFEEAPVKD-------VFTWTAMVSGYVQNGKVDEARMIFDAMPEK---NTVSWNAMIAG 318 (778)
Q Consensus 249 ~~~~li~~y~~~g~~~~A~~~f~~m~~~d-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~t~~~ll~~ 318 (778)
++..+...|.+.|++++|..+++.+.... ...+..+...|.+.|++++|+.+|+++.+. +..++..++..
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 150 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEI 150 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44444444455555555555544443211 123444445555555555555555555431 33444455555
Q ss_pred HhccCChHHHHHHHHhhcc--cc------ccHHHHHHHHHHhcCChhHHHHHhhhCCCC---CeeehhhHHHHHHhcCCh
Q 004024 319 YVQTKRMDMARELFEAMTC--KN------VASWNTMITGYAQSGEITHARNLFDRMPQH---DCISWAAIIAGYAQSGYS 387 (778)
Q Consensus 319 ~~~~~~~~~a~~i~~~~~~--~~------~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~ 387 (778)
+...|++++|.+.+..+.. ++ ...+..+...|.+.|++++|.+.|+++.+. +...|..+...|.+.|++
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 230 (389)
T PRK11788 151 YQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDY 230 (389)
T ss_pred HHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCH
Confidence 5555555555555554441 11 112345556666777777777777765432 233556666677777777
Q ss_pred hHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 004024 388 EDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEI 467 (778)
Q Consensus 388 ~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 467 (778)
++|+++|+++...+......++..+..++...|++++|...+..+.+.. |+..++..++..|.+.|++++|.++|+++
T Consensus 231 ~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 231 AAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7777777777654321112334445555555555555555555554442 33344466677777777777777777665
Q ss_pred cC--CChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHH
Q 004024 468 VD--KDVISWNTMIAGYAR---HGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVE 524 (778)
Q Consensus 468 ~~--~d~~~~~~li~~~~~---~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 524 (778)
.+ |+..+++.++..+.. +|+.++++.+|++|.+.+++|++. .+|++.|.+.
T Consensus 309 l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~~ 364 (389)
T PRK11788 309 LRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFTA 364 (389)
T ss_pred HHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCCC
Confidence 43 666666666665553 456677777777777666666655 3366665543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-16 Score=184.95 Aligned_cols=376 Identities=9% Similarity=0.027 Sum_probs=219.4
Q ss_pred cCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCC---CCCeehHHHHHHHHHhcCChHHHHHHHH
Q 004024 229 QKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAP---VKDVFTWTAMVSGYVQNGKVDEARMIFD 302 (778)
Q Consensus 229 ~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~ 302 (778)
.|+.++|++++.... +.+...+..+...+.+.|++++|..+|++.. ..+...+..++..+...|++++|+..++
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444444332 1233345666666666666666666666632 2234445566666666666666666666
Q ss_pred hCCC--C-CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCee----
Q 004024 303 AMPE--K-NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCI---- 372 (778)
Q Consensus 303 ~m~~--~-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~---- 372 (778)
+... | +.. +..+..++...|+.++|...++.+. +.+..++..+...+.+.|..+.|.+.++.... ++.
T Consensus 108 ~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~ 185 (765)
T PRK10049 108 QLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRD 185 (765)
T ss_pred HHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHH
Confidence 6543 2 334 5566666666677777777766666 44445555666667777777777777776654 111
Q ss_pred ----ehhhHHHHH-----HhcCCh---hHHHHHHHHHhhc-CcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCC
Q 004024 373 ----SWAAIIAGY-----AQSGYS---EDSLRLFIEMKRY-GERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEA 439 (778)
Q Consensus 373 ----~~~~li~~~-----~~~g~~---~~Al~l~~~m~~~-g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 439 (778)
....++..+ ...++. ++|++.++.+... ...|+... ..
T Consensus 186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~--~~--------------------------- 236 (765)
T PRK10049 186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA--DY--------------------------- 236 (765)
T ss_pred HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch--HH---------------------------
Confidence 000111111 111122 4455555555432 11121110 00
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccCCC---hh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hHH
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVDKD---VI-SWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-----ITM 510 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~-~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-----~t~ 510 (778)
.......+.++...|++++|+..|+++.+.+ +. .--.+...|...|++++|+..|+++.+. .|.. ...
T Consensus 237 -~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~ 313 (765)
T PRK10049 237 -QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEEL 313 (765)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHH
Confidence 0000000112234466666666666665421 11 1111345666667777777776666542 2221 234
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchhhcC----------CCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-H
Q 004024 511 VGILSACSHTGLVEKGTEYFYSMNRDYG----------VIPN---SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-A 575 (778)
Q Consensus 511 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~ 575 (778)
..+..++...|+.++|.++++.+..... -.|+ ...+..+..++...|++++|++.++++ ...|+ .
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~ 393 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ 393 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 4445556666777777776666654311 1233 234556778888899999999999887 33453 6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
..|..+...+...|+.+.|+..++++++++|+++..+..++..+...|+|++|.++++.+.+.
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 688888899999999999999999999999999999999999999999999999988887764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-15 Score=175.47 Aligned_cols=208 Identities=11% Similarity=0.082 Sum_probs=143.9
Q ss_pred hcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHH
Q 004024 416 CANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDAL 492 (778)
Q Consensus 416 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al 492 (778)
+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++..+ | +...|..+...+.+.|++++|+
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 333444444444444443332 33556677788888888888888888888754 3 4566777888888889999999
Q ss_pred HHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCCh--------HHHHHHHHHHhhcCCHHHHH
Q 004024 493 MLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNS--------KHYTCMVDLLGRAGRLDEAQ 563 (778)
Q Consensus 493 ~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--------~~y~~lv~~l~r~g~~~eA~ 563 (778)
..|++..+ ..|+ ...+..+..++...|++++|.+.|+.... +.|+. ..++.....+...|++++|.
T Consensus 454 ~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~ 528 (615)
T TIGR00990 454 ATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAE 528 (615)
T ss_pred HHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHH
Confidence 99988877 4565 45677777888888999999988888764 23321 11222223344569999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 564 NLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 564 ~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+++++. ...|+ ...|..|...+...|+++.|...++++.++.+.....+ .+..|-++.++....++
T Consensus 529 ~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 529 NLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 999885 55665 45788999999999999999999999999987653322 22345566666555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-15 Score=176.40 Aligned_cols=345 Identities=12% Similarity=0.061 Sum_probs=263.8
Q ss_pred hcCCCHHHHHHHHhhCCCC------CeehHHHHHHHHHhcCChHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHH
Q 004024 258 AQNNYLAEAQRLFEEAPVK------DVFTWTAMVSGYVQNGKVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMA 328 (778)
Q Consensus 258 ~~~g~~~~A~~~f~~m~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a 328 (778)
.+..+++.-.-+|..-+++ +..-...++..+.+.|++++|+.+++..... +...+..++.++...|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 3556666666666665532 2333455677788889999999888887642 555666667777788999999
Q ss_pred HHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCC--C-CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCc
Q 004024 329 RELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQ--H-DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGE 402 (778)
Q Consensus 329 ~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~ 402 (778)
...++.+. +.+...+..+...|.+.|++++|...|++..+ | +...|..+...+.+.|+.++|...++++....
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~- 174 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV- 174 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-
Confidence 99998888 55667788888889999999999999988764 3 44578888888999999999999998876643
Q ss_pred ccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHH
Q 004024 403 RLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMI 479 (778)
Q Consensus 403 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li 479 (778)
|+.......+..+...|++++|...+..+.+..-.++......+...|.+.|+.++|...|++... .+...+..+.
T Consensus 175 -P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg 253 (656)
T PRK15174 175 -PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLG 253 (656)
T ss_pred -CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 333332222334677889999988888877664334444555567788899999999999998865 3567888899
Q ss_pred HHHHHcCChHH----HHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHH
Q 004024 480 AGYARHGFGKD----ALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLL 553 (778)
Q Consensus 480 ~~~~~~g~~~~----Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l 553 (778)
..|.+.|++++ |+..|++..+ +.|+. ..+..+...+...|+.++|...++..... .|+ ...+..+..+|
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l 328 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 99999999885 8999999988 67765 46778888999999999999999988753 453 55667788999
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 004024 554 GRAGRLDEAQNLMKNM-PFEPDAATW-GALLGACRLYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m-~~~p~~~~~-~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
.+.|++++|.+.++++ ...|+...| ..+..++...|+.+.|...++++++..|++.
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999887 356765444 3456678889999999999999999999864
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-14 Score=160.73 Aligned_cols=487 Identities=12% Similarity=0.120 Sum_probs=265.1
Q ss_pred hcCCchhhhHhhhhCCC------CChhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHH---c---CCChh
Q 004024 73 RNGCCDSALHVFNSMPR------RSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYV---R---NKSLS 140 (778)
Q Consensus 73 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~---~---~g~~~ 140 (778)
..+++..|+.+|...+. +|+.+ .+-..+.++|+.+.|+..|.+..+-|+..-++++.... . ...+.
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHH
Confidence 44556666666655322 22221 12233456667777777776665433333333332211 1 11233
Q ss_pred HHHHHHhhCC---CCCcchHHHHHHHHHcCCChHHHHHHHHhcccCC------cchHHHHHHHHHhcCCHHHHHHHHHhc
Q 004024 141 AARNLFEMMP---KRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKN------EISWNGLLAAYVQNGRIEEACMLFESK 211 (778)
Q Consensus 141 ~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d------~~t~~~ll~~~~~~g~~~~a~~~~~~~ 211 (778)
.+..++.+.- ..|+++.|.|.+.|.-.|++..+..+...+...+ ..+|--+.++|-..|++++|...|-+.
T Consensus 254 ~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3444443322 3466677777777777777777777777666322 234666777777777777777777666
Q ss_pred ccCC----ccHhhHHHHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCC----CHHHHHHHHhhCCCC---C
Q 004024 212 ANWE----VVSWNSLMGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNN----YLAEAQRLFEEAPVK---D 277 (778)
Q Consensus 212 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g----~~~~A~~~f~~m~~~---d 277 (778)
.+.+ +..+-.|..+|.+.|+++.|...|+.+. +.+..+--.|...|+..+ ..+.|..+..+...+ |
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d 413 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD 413 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc
Confidence 5542 2345566677777777777777777665 334455555666666554 445555555555443 3
Q ss_pred eehHHHHHHHHHhcCChHHHHHHHHhCC--------CCCcchHHHHHHHHhccCChHHHHHHHHhhc-------cccc--
Q 004024 278 VFTWTAMVSGYVQNGKVDEARMIFDAMP--------EKNTVSWNAMIAGYVQTKRMDMARELFEAMT-------CKNV-- 340 (778)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~l~~~m~--------~~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~-------~~~~-- 340 (778)
...|-.+...|.+..-+.. +..|.... .......|.+.......|+++.|...|.... .+|.
T Consensus 414 ~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 4455555555544433222 33333322 1255666666666677777777776666665 1111
Q ss_pred ----cHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHh-------cCChhHHHHHHHHHhhcC-cccCccc
Q 004024 341 ----ASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQ-------SGYSEDSLRLFIEMKRYG-ERLNRSP 408 (778)
Q Consensus 341 ----~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~-------~g~~~~Al~l~~~m~~~g-~~pd~~t 408 (778)
.+--.|...+-..++.+.|.+.+..+....+ ..|.+|.+ .+...+|..++++..... -.|+..+
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp----~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ars 568 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP----GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARS 568 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc----hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHH
Confidence 1122344445555666667777666654222 12223222 245566666666655422 2233332
Q ss_pred ccchHHHhcccccHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHh------------cCCHHHHHHHHHhccC---CCh
Q 004024 409 FTSVLSTCANLASLELGKQLHGQLVKVG-FEAGCFVGNALLVMYCK------------CGSVEEAYHAFEEIVD---KDV 472 (778)
Q Consensus 409 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~Li~~y~k------------~g~~~~A~~~f~~m~~---~d~ 472 (778)
| +-..+.....+..|..-+..+.+.- ..+|++..-+|.+.|.. .+..+.|.++|.++.. +|.
T Consensus 569 l--~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 569 L--LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred H--HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 2 1112333334444444444443321 12455555555554432 2445666777766654 345
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
..-|-+...++..|++.+|..+|.+..+... -+.-+|..+...|...|++-.|++.|+...+++.-.-+.....+|..+
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 5556666667777777777777777766532 233456666777777777777777777766666655566667777777
Q ss_pred HhhcCCHHHHHHHHHhC
Q 004024 553 LGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m 569 (778)
+.++|.+.+|.+.....
T Consensus 726 ~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 77777777776655443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-15 Score=169.68 Aligned_cols=341 Identities=12% Similarity=0.013 Sum_probs=272.5
Q ss_pred hcCChHHHHHHHHhCCCC------CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHH
Q 004024 290 QNGKVDEARMIFDAMPEK------NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHAR 360 (778)
Q Consensus 290 ~~g~~~~A~~l~~~m~~~------~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~ 360 (778)
+..+++.-.-+|....+. +.....-++..+.+.|++++|..++..+. +.+......++..+...|++++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 445555444445444432 44556667888999999999999999988 556667777778888899999999
Q ss_pred HHhhhCCCC---CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcc-cccchHHHhcccccHHHHHHHHHHHHHcC
Q 004024 361 NLFDRMPQH---DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRS-PFTSVLSTCANLASLELGKQLHGQLVKVG 436 (778)
Q Consensus 361 ~~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 436 (778)
..|+++.+. +...|..+...+.+.|++++|+..|++.... .|+.. .+..+..++...|+.++|...+..+.+..
T Consensus 97 ~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 97 QVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 999998753 3467888889999999999999999999874 46544 55667778899999999999999887664
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHH
Q 004024 437 FEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDK----DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMV 511 (778)
Q Consensus 437 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~ 511 (778)
-.+ ...+..+. .+...|++++|...++.+.+. +...+..+...+...|++++|+..|++..+ ..|+ ...+.
T Consensus 175 P~~-~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~~~~ 250 (656)
T PRK15174 175 PPR-GDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAALRR 250 (656)
T ss_pred CCC-HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHH
Confidence 333 33333333 478899999999999987653 233445566788899999999999999998 4565 44667
Q ss_pred HHHHHHhccCcHHH----HHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 004024 512 GILSACSHTGLVEK----GTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGA 584 (778)
Q Consensus 512 ~ll~a~~~~g~~~~----a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a 584 (778)
.+..++...|+.++ |...|+...+ +.| +...+..+..+|.+.|++++|...+++. ...|+ ..++..+..+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 78888999999986 7999998874 445 4678889999999999999999999887 45565 5678888899
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 585 CRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 585 ~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
+...|+++.|...++++++.+|+++..+..++.+|...|++++|.+.++...+..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998777778999999999999999988876553
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-14 Score=158.20 Aligned_cols=516 Identities=15% Similarity=0.173 Sum_probs=350.6
Q ss_pred chHHHHHHhhCCC--CCcchHHHHHHHH--HcCCChhHHHHHHhhCC------CCCcchHHHHHHHHHcCCChHHHHHHH
Q 004024 108 LDPARQVFDQMPQ--RDLVSWNVMISGY--VRNKSLSAARNLFEMMP------KRDVVSWNTMLSGYAQNGYADAARRIF 177 (778)
Q Consensus 108 ~~~A~~~f~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~------~~d~~~~~~li~~~~~~g~~~~A~~~~ 177 (778)
++.|.+.|..... |+-+ ...|..++ ...|++..|+.+|.... .+|+.. .+-..+.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 4777777776652 2222 12223332 34578899999998753 244432 2234566889999999999
Q ss_pred HhcccCCcchHHHHHHHHH------hcCCHHHHHHHHHhcccC---CccHhhHHHHHHHhcCChhHHHHHHhhCCCCC--
Q 004024 178 DRMLEKNEISWNGLLAAYV------QNGRIEEACMLFESKANW---EVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRD-- 246 (778)
Q Consensus 178 ~~m~~~d~~t~~~ll~~~~------~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d-- 246 (778)
.+..+-|+...++++.... ....+..|.+++..+-.. +++..+.|.+.|.--|++..+..+...+....
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 8888655544444433221 123355666776665543 67788889999999999988888877765221
Q ss_pred ----hhHHHHHHHHHhcCCCHHHHHHHHhhCCCC--C--eehHHHHHHHHHhcCChHHHHHHHHhCCC--C-CcchHHHH
Q 004024 247 ----EVSWNTMITGYAQNNYLAEAQRLFEEAPVK--D--VFTWTAMVSGYVQNGKVDEARMIFDAMPE--K-NTVSWNAM 315 (778)
Q Consensus 247 ----~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~-~~~t~~~l 315 (778)
..+|.-+..+|-..|++++|...|.+.... | +..+-.+...|.+.|+++.+...|++..+ | +..|...+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 235777888899999999999998776532 2 34566778889999999999999988865 3 66777777
Q ss_pred HHHHhccC----ChHHHHHHHHhhc---cccccHHHHHHHHHHhcCC------hhHHHHHhhhC-CCCCeeehhhHHHHH
Q 004024 316 IAGYVQTK----RMDMARELFEAMT---CKNVASWNTMITGYAQSGE------ITHARNLFDRM-PQHDCISWAAIIAGY 381 (778)
Q Consensus 316 l~~~~~~~----~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~------~~~A~~~f~~m-~~~d~~~~~~li~~~ 381 (778)
...|+..+ ..+.|..+..... +.|...|-.+..+|-...- +..|..++..- ....+...|.+.+.+
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 77777664 5577777777776 4566666666666655443 23334333322 234556778888888
Q ss_pred HhcCChhHHHHHHHHHhhc---CcccCcc-----cccchHH-HhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 004024 382 AQSGYSEDSLRLFIEMKRY---GERLNRS-----PFTSVLS-TCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYC 452 (778)
Q Consensus 382 ~~~g~~~~Al~l~~~m~~~---g~~pd~~-----t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 452 (778)
...|++++|...|.+.... ...+|.. |..--+. ..-..++.+.|.+++..+++.. | ..|++|.
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p------~YId~yl 534 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--P------GYIDAYL 534 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--c------hhHHHHH
Confidence 9999999999999887654 2334442 1111222 2345668888889998887753 1 2455555
Q ss_pred hc-------CCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhHHHHHHHHHhc--
Q 004024 453 KC-------GSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVG-IKPDDITMVGILSACSH-- 519 (778)
Q Consensus 453 k~-------g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~pd~~t~~~ll~a~~~-- 519 (778)
+. +.+.+|...+..... .|+..|+-+...|.....+..|-+-|+...+.- ..+|..+..+|.+.|..
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 54 556678888877644 577788878778888888888888776655432 34677777777775532
Q ss_pred ----------cCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 004024 520 ----------TGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNMP--FEPDAATWGALLGACR 586 (778)
Q Consensus 520 ----------~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~Ll~a~~ 586 (778)
.+..++|+++|....+ ..| |...-+-+.-.|+..|++.+|.++|.+.. ......+|-.|...|.
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 2456677777776654 233 56666777788888999999999988772 2335678888999999
Q ss_pred HcCChHHHHHHHHHHHhc--CCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 587 LYGKTELAEKAAEVIFEM--EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 587 ~~g~~~~a~~~~~~~~~l--~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..|++-.|.++|+..+.. .-+++.....|+.++...|+|.++.+.......
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999988874 345667788899999999999998887665544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-14 Score=171.56 Aligned_cols=390 Identities=11% Similarity=0.024 Sum_probs=238.4
Q ss_pred HHHHHHcCCChHHHHHHHHhccc---CCcchHHHHHHHHHhcCCHHHHHHHHHhcccCC---ccHhhHHHHHHHhcCChh
Q 004024 160 MLSGYAQNGYADAARRIFDRMLE---KNEISWNGLLAAYVQNGRIEEACMLFESKANWE---VVSWNSLMGGFVKQKRLG 233 (778)
Q Consensus 160 li~~~~~~g~~~~A~~~~~~m~~---~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~ 233 (778)
.+......|+.++|++++.+..+ .+...+..+..++...|++++|.+++++.++.+ ...+..+...+...|+++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 34556677888888888877763 233347777777888888888888887765543 334556666666677777
Q ss_pred HHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 004024 234 DAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVK---DVFTWTAMVSGYVQNGKVDEARMIFDAMPEK 307 (778)
Q Consensus 234 ~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 307 (778)
+|...+++.. +.+.. +..+...+...|+.++|...++++... +...+..+...+...|..++|+..++....
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~- 178 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL- 178 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-
Confidence 7776666654 33444 666666666677777777766665532 333445555666666666666666665554
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHH-----HhcCCh---hHHHHHhhhCCC---CCeeehh-
Q 004024 308 NTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGY-----AQSGEI---THARNLFDRMPQ---HDCISWA- 375 (778)
Q Consensus 308 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y-----~k~g~~---~~A~~~f~~m~~---~d~~~~~- 375 (778)
++.... -+. ......++..+ ...+++ ++|+..++.+.+ .++....
T Consensus 179 ~p~~~~-~l~----------------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 179 TPAEKR-DLE----------------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred CHHHHH-HHH----------------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 111000 000 00011111111 112223 556666665542 1211111
Q ss_pred ------hHHHHHHhcCChhHHHHHHHHHhhcCcc-cCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 004024 376 ------AIIAGYAQSGYSEDSLRLFIEMKRYGER-LNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALL 448 (778)
Q Consensus 376 ------~li~~~~~~g~~~~Al~l~~~m~~~g~~-pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 448 (778)
..+..+...|+.++|+..|+++.+.+.. |+. .. ..+.
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~----------------------------------a~--~~la 279 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW----------------------------------AQ--RWVA 279 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH----------------------------------HH--HHHH
Confidence 1123445667788888888877765421 211 11 1134
Q ss_pred HHHHhcCCHHHHHHHHHhccCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCh---
Q 004024 449 VMYCKCGSVEEAYHAFEEIVDKD-------VISWNTMIAGYARHGFGKDALMLFESMKTVG-----------IKPDD--- 507 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~~d-------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-----------~~pd~--- 507 (778)
+.|...|++++|+..|+++.+.+ ...+..+..++...|++++|+++++++.... -.||.
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 45666666666666666654321 1234445556667777777777777776531 12332
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 004024 508 ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGAC 585 (778)
Q Consensus 508 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~ 585 (778)
..+......+...|+.++|++.++.+... .+-+...+..+..++.+.|++++|++.+++. ...|+ ...+..+....
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 13345556777888888888888888753 2235677888889999999999999999887 56676 55777777788
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchH
Q 004024 586 RLYGKTELAEKAAEVIFEMEPENAGMY 612 (778)
Q Consensus 586 ~~~g~~~~a~~~~~~~~~l~p~~~~~y 612 (778)
...|+++.|+..++++++..|+++.+.
T Consensus 438 l~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 889999999999999999999996543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-13 Score=160.32 Aligned_cols=427 Identities=11% Similarity=0.049 Sum_probs=252.1
Q ss_pred HHHhcCCHHHHHHHHHhcccCCccH---hhHHHHHHHhcCChhHHHHHHhhCCCCChhHH-HHH--HHHHhcCCCHHHHH
Q 004024 194 AYVQNGRIEEACMLFESKANWEVVS---WNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSW-NTM--ITGYAQNNYLAEAQ 267 (778)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~-~~l--i~~y~~~g~~~~A~ 267 (778)
...+.|+++.|++.|.+..+.++.. ...++..+...|+.++|+..+++...|+...+ ..+ ...|...|++++|.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3568888889999988888765442 23677777777888888888888775533333 333 44677778888888
Q ss_pred HHHhhCCCC---CeehHHHHHHHHHhcCChHHHHHHHHhCCCC--CcchHHHHHHHHhccCChHHHHHHHHhhc---ccc
Q 004024 268 RLFEEAPVK---DVFTWTAMVSGYVQNGKVDEARMIFDAMPEK--NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKN 339 (778)
Q Consensus 268 ~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~ 339 (778)
++|+++.+. |...+..++..|.+.++.++|++.++++... +...+..++..+...++..+|.+.++++. +.+
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 888877643 3445666777778888888888888887764 32333333333333455545777777777 455
Q ss_pred ccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhccc
Q 004024 340 VASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANL 419 (778)
Q Consensus 340 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 419 (778)
...+..++....+.|-...|.++..+-++ ..+=..... =+.+.|- ++.+.+..|+..- -.+-
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~-----l~~~~~a----~~vr~a~~~~~~~-------~~r~ 264 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQ-----LERDAAA----EQVRMAVLPTRSE-------TERF 264 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHH-----HHHHHHH----HHHhhcccccccc-------hhhH
Confidence 66677777777788877777777666442 111000000 0000010 1111111110000 0000
Q ss_pred ccHHHHHHHHHHHHHc-CC-CCchh-HHHHHHH---HHHhcCCHHHHHHHHHhccCCC----hhHHHHHHHHHHHcCChH
Q 004024 420 ASLELGKQLHGQLVKV-GF-EAGCF-VGNALLV---MYCKCGSVEEAYHAFEEIVDKD----VISWNTMIAGYARHGFGK 489 (778)
Q Consensus 420 ~~~~~a~~i~~~~~~~-g~-~~~~~-~~~~Li~---~y~k~g~~~~A~~~f~~m~~~d----~~~~~~li~~~~~~g~~~ 489 (778)
...+.+..-++.+... +- ++... ...+.+| ++.+.|+..++++.|+.+.... ..+--++.++|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 1222333333333221 11 22111 1223333 4456677777777777776422 123345667777777777
Q ss_pred HHHHHHHHHHHCC----CCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcC----------CCCC---hHHHHHHHH
Q 004024 490 DALMLFESMKTVG----IKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYG----------VIPN---SKHYTCMVD 551 (778)
Q Consensus 490 ~Al~l~~~m~~~g----~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~y~~lv~ 551 (778)
+|+.+|++..... ..| +......|.-|+..++++++|..+++.+.+.-. -.|+ ...+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 7777777765432 112 222245666777777777777777777765211 0122 233445566
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHH
Q 004024 552 LLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVS 629 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~ 629 (778)
.+...|++.+|++.++++ ...| |..++..+....+..|++..|+..++.+..++|++..+...++..+...|+|++|.
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH
Confidence 677778888888887777 2334 46677777777788888888888887777788888777888888888888888887
Q ss_pred HHHHHHHhC
Q 004024 630 KVRLKMRDR 638 (778)
Q Consensus 630 ~~~~~m~~~ 638 (778)
++.+...+.
T Consensus 505 ~~~~~l~~~ 513 (822)
T PRK14574 505 LLTDDVISR 513 (822)
T ss_pred HHHHHHHhh
Confidence 776655543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-13 Score=159.77 Aligned_cols=436 Identities=11% Similarity=0.042 Sum_probs=256.5
Q ss_pred HHHcCCChhHHHHHHhhCCCCCcch---HHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHH---HHHHHhcCCHHHHH
Q 004024 132 GYVRNKSLSAARNLFEMMPKRDVVS---WNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGL---LAAYVQNGRIEEAC 205 (778)
Q Consensus 132 ~~~~~g~~~~A~~~f~~m~~~d~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~l---l~~~~~~g~~~~a~ 205 (778)
...+.|++..|+..|++..+.++.. ...++..+...|+.++|+..+++...|+...+..+ ...+...|++++|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4567788888888887776433221 22666777777777777777777775544433333 33555667777777
Q ss_pred HHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHH
Q 004024 206 MLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMV 285 (778)
Q Consensus 206 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li 285 (778)
++++++++.++ .|+..+..++..|.+.++.++|++.++++...+......+.
T Consensus 123 ely~kaL~~dP----------------------------~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~ 174 (822)
T PRK14574 123 ALWQSSLKKDP----------------------------TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMT 174 (822)
T ss_pred HHHHHHHhhCC----------------------------CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHH
Confidence 77777766543 23444455556666666666666666666544333222233
Q ss_pred HHHHh--cCChHHHHHHHHhCCC--C-CcchHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHH
Q 004024 286 SGYVQ--NGKVDEARMIFDAMPE--K-NTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHAR 360 (778)
Q Consensus 286 ~~~~~--~g~~~~A~~l~~~m~~--~-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~ 360 (778)
.+|.. .++..+|++.++++.+ | +...+..+..+..+.|-...|.++...-. +.++-.-.... +.+.|.
T Consensus 175 layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p--~~f~~~~~~~l-----~~~~~a 247 (822)
T PRK14574 175 LSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP--NLVSAEHYRQL-----ERDAAA 247 (822)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc--cccCHHHHHHH-----HHHHHH
Confidence 33333 3444446666666653 2 45555566666666666666665554432 11111000000 000111
Q ss_pred HHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhc-CcccCcc-cc----cchHHHhcccccHHHHHHHHHHHHH
Q 004024 361 NLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRY-GERLNRS-PF----TSVLSTCANLASLELGKQLHGQLVK 434 (778)
Q Consensus 361 ~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~-g~~pd~~-t~----~~ll~a~~~~~~~~~a~~i~~~~~~ 434 (778)
+..+....+.. + .-. +---.+.|+.-++.+... +-.|... -| .--+-++...+...++...++.+..
T Consensus 248 ~~vr~a~~~~~-~---~~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 248 EQVRMAVLPTR-S---ETE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHhhcccccc-c---chh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 11100000000 0 000 000122333333333321 1112111 11 1123344555556666666666665
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---
Q 004024 435 VGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDK---------DVISWNTMIAGYARHGFGKDALMLFESMKTVG--- 502 (778)
Q Consensus 435 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---------d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g--- 502 (778)
.|.+....+--++.++|...++.++|..+|..+... +......|.-+|...+++++|..+++++.+.-
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 555555566677788888888888888888876331 22234667778888888888888888887621
Q ss_pred ----------CCCChhH-HHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 004024 503 ----------IKPDDIT-MVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM- 569 (778)
Q Consensus 503 ----------~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m- 569 (778)
..||-.. +......+...|++.+|.+.++.+.. ..| |......+.+++...|++.+|++.++..
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 1223233 34455678899999999999999964 344 7888899999999999999999999776
Q ss_pred CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 004024 570 PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMY 612 (778)
Q Consensus 570 ~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y 612 (778)
...|+ ..+...+..+....|++..|+.+.+.+.+..|+++.+-
T Consensus 478 ~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 478 SLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 45676 45667777888888999999999999999999997443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-11 Score=120.97 Aligned_cols=335 Identities=17% Similarity=0.234 Sum_probs=223.7
Q ss_pred cCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCC----CcchHHHHHHHHhccCChHHHHHHHHh
Q 004024 259 QNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK----NTVSWNAMIAGYVQTKRMDMARELFEA 334 (778)
Q Consensus 259 ~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~t~~~ll~~~~~~~~~~~a~~i~~~ 334 (778)
|.|.+.+ ++-+...+...++..||.|.++--..+.|.+++++.... +..+||++|.+-+-. .++.+..+
T Consensus 191 K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~E 263 (625)
T KOG4422|consen 191 KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAE 263 (625)
T ss_pred ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHH
Confidence 4455444 444444456678888888888888888888888887653 777888888765433 33667777
Q ss_pred hc----cccccHHHHHHHHHHhcCChhHHHHHh----hhCC----CCCeeehhhHHHHHHhcCChhH-HHHHHHHHhhc-
Q 004024 335 MT----CKNVASWNTMITGYAQSGEITHARNLF----DRMP----QHDCISWAAIIAGYAQSGYSED-SLRLFIEMKRY- 400 (778)
Q Consensus 335 ~~----~~~~~~~~~Li~~y~k~g~~~~A~~~f----~~m~----~~d~~~~~~li~~~~~~g~~~~-Al~l~~~m~~~- 400 (778)
|+ .||..|+|+++...++.|+++.|++.+ .+|+ +|...+|.-+|..+.+.+++.+ |..+..+++..
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 76 789999999999999999887766554 4444 5778899999999988887744 55666665542
Q ss_pred ---Cccc----CcccccchHHHhcccccHHHHHHHHHHHHHcC----CCCc---hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004024 401 ---GERL----NRSPFTSVLSTCANLASLELGKQLHGQLVKVG----FEAG---CFVGNALLVMYCKCGSVEEAYHAFEE 466 (778)
Q Consensus 401 ---g~~p----d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g----~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~ 466 (778)
.++| |...|.+.++.|.++.+.+.|.++++.+.... +.++ .+-|.-+.+..+....++.-...++.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333 34467889999999999999999998875321 2222 34456678888888899999999998
Q ss_pred ccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCc---------HH-H----HHH
Q 004024 467 IVD----KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGL---------VE-K----GTE 528 (778)
Q Consensus 467 m~~----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~---------~~-~----a~~ 528 (778)
|.- |+..+-.-++.+....|+++-.-+++..|+..|..-+...-.-++.-.++... +. . |..
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad 503 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAAD 503 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 854 56666667777878888888888888887776644443333333333332220 00 0 011
Q ss_pred HHH-------HchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCChHHH
Q 004024 529 YFY-------SMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-------PFEPDAATWGALLGACRLYGKTELA 594 (778)
Q Consensus 529 ~~~-------~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~~~~~~~Ll~a~~~~g~~~~a 594 (778)
+++ .|. ...-.....+|..-++.|.|+.++|.+++.-. |..|......-|+.+-...++...|
T Consensus 504 ~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 504 IKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 111 111 22234456778888888888888888876433 4445444444556666666667777
Q ss_pred HHHHHHHHh
Q 004024 595 EKAAEVIFE 603 (778)
Q Consensus 595 ~~~~~~~~~ 603 (778)
..+++-+.+
T Consensus 581 ~~~lQ~a~~ 589 (625)
T KOG4422|consen 581 IEVLQLASA 589 (625)
T ss_pred HHHHHHHHH
Confidence 766666644
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.2e-10 Score=123.01 Aligned_cols=570 Identities=14% Similarity=0.100 Sum_probs=376.5
Q ss_pred HHHHHHhhcCCchhhhHhhhhCCCC---ChhhHHHHHHHHHhCCCchHHHHHHhh---CCCCCcchHHHHHHHHHcCCCh
Q 004024 66 VAITTHMRNGCCDSALHVFNSMPRR---SSVSYNAMISGYLLNGQLDPARQVFDQ---MPQRDLVSWNVMISGYVRNKSL 139 (778)
Q Consensus 66 ~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~ 139 (778)
...+-....|++++|..++....+. +...|-.|...|-..|+.+++...+-. +.+.|.-.|-.+-....+.|.+
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 3334445669999999999887763 456899999999999999999876643 3356778899999999999999
Q ss_pred hHHHHHHhhCCCCCcchHHH---HHHHHHcCCChHHHHHHHHhcccCCc-c-------hHHHHHHHHHhcCCHHHHHHHH
Q 004024 140 SAARNLFEMMPKRDVVSWNT---MLSGYAQNGYADAARRIFDRMLEKNE-I-------SWNGLLAAYVQNGRIEEACMLF 208 (778)
Q Consensus 140 ~~A~~~f~~m~~~d~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~d~-~-------t~~~ll~~~~~~g~~~~a~~~~ 208 (778)
..|+-.|.+..+.++.-|-. -...|-+.|+...|.+-|.++.+.++ + +--.++..+...++-+.|.+.+
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999987644444443 36788899999999999999974332 1 2233456677777778888888
Q ss_pred HhcccC-----CccHhhHHHHHHHhcCChhHHHHHHhhCCC----C---------------------------ChhH-HH
Q 004024 209 ESKANW-----EVVSWNSLMGGFVKQKRLGDAKWIFDRMPV----R---------------------------DEVS-WN 251 (778)
Q Consensus 209 ~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~---------------------------d~~~-~~ 251 (778)
+..+.. +...++.++..|.+....+.|......+.. + +..+ ..
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 877652 345788999999999888888776554431 1 1122 11
Q ss_pred HHHHHHhcCCCHHHHHHHHhhCC----CCCeehHHHHHHHHHhcCChHHHHHHHHhCCCC----CcchHHHHHHHHhccC
Q 004024 252 TMITGYAQNNYLAEAQRLFEEAP----VKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK----NTVSWNAMIAGYVQTK 323 (778)
Q Consensus 252 ~li~~y~~~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~t~~~ll~~~~~~~ 323 (778)
.+--...+.+...++..-|.... ..++..|.-+..+|.+.|++.+|+.+|..+... +.+.|.-+..+|-..|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 11112223444445544443221 224566888999999999999999999999764 7789999999999999
Q ss_pred ChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCee-----ehh-------hHHHHHHhcCChh
Q 004024 324 RMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCI-----SWA-------AIIAGYAQSGYSE 388 (778)
Q Consensus 324 ~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~-----~~~-------~li~~~~~~g~~~ 388 (778)
..++|.+.++.++ +.+..+--.|-..|-+.|+.++|.+.+..+..+|.. .|. -....|.+.|+.+
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 9999999999999 566777788889999999999999999998877631 221 2334577888888
Q ss_pred HHHHHHHHHhhcCcc-----c-------------CcccccchH----HHhccccc---HHHHHHH---HHHHHHcCCCCc
Q 004024 389 DSLRLFIEMKRYGER-----L-------------NRSPFTSVL----STCANLAS---LELGKQL---HGQLVKVGFEAG 440 (778)
Q Consensus 389 ~Al~l~~~m~~~g~~-----p-------------d~~t~~~ll----~a~~~~~~---~~~a~~i---~~~~~~~g~~~~ 440 (778)
+=+..-..|...... | ....+...+ .+-.+.++ .+.+..- .......|+..+
T Consensus 544 ~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsid 623 (895)
T KOG2076|consen 544 EFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSID 623 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHH
Confidence 766665555432110 1 111122222 22222222 1111111 111122233332
Q ss_pred h--hHHHHHHHHHHhcCCHHHHHHHHHhccCC-----Chh----HHHHHHHHHHHcCChHHHHHHHHHHHHC-C--CCCC
Q 004024 441 C--FVGNALLVMYCKCGSVEEAYHAFEEIVDK-----DVI----SWNTMIAGYARHGFGKDALMLFESMKTV-G--IKPD 506 (778)
Q Consensus 441 ~--~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-----d~~----~~~~li~~~~~~g~~~~Al~l~~~m~~~-g--~~pd 506 (778)
. .++.-+|...+|.|+.++|..+...+..- +.. .-..++.+....+++.+|...++.|... + ..|.
T Consensus 624 dwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~ 703 (895)
T KOG2076|consen 624 DWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY 703 (895)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence 2 35566788999999999999998877552 222 2345677778899999999999999874 1 1333
Q ss_pred hh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH--HHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 004024 507 DI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV--DLLGRAGRLDEAQNLMKNM-PFEPDAATWGALL 582 (778)
Q Consensus 507 ~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv--~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll 582 (778)
.. .|+..++..+..|+-.--.+++.... ...|+-.++-+++ ..+...|.+.-|+..+-+. ...||....+-++
T Consensus 704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 33 34445555555555433333333322 2233332333333 3456778888888765433 2344533333333
Q ss_pred HH------H-----HHcCChHHHHHHHHHHHhcCCC--CCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 583 GA------C-----RLYGKTELAEKAAEVIFEMEPE--NAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 583 ~a------~-----~~~g~~~~a~~~~~~~~~l~p~--~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
+. + .+|-.+-+|....++..++.-. .-.++..++.+|-..|-..-|.+++++..+-
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 22 1 2333456677777777776543 4567889999999999999999999988764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.3e-12 Score=127.32 Aligned_cols=448 Identities=12% Similarity=0.121 Sum_probs=280.0
Q ss_pred HHHHHHcCCChHHHHHHHHhccc----CCcc-hHHHHHHHHHhcCCHHHHHHHHHhcccC----C----ccHhhHHHHHH
Q 004024 160 MLSGYAQNGYADAARRIFDRMLE----KNEI-SWNGLLAAYVQNGRIEEACMLFESKANW----E----VVSWNSLMGGF 226 (778)
Q Consensus 160 li~~~~~~g~~~~A~~~~~~m~~----~d~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~----~~~~~~li~~~ 226 (778)
|..-|..+....+|+..|+-+.+ ||.- .--.+...+.+.+.+.+|++.++.++.. + +...+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 44455556666677766665542 2211 1112233445566677777776655432 1 12344444456
Q ss_pred HhcCChhHHHHHHhhCC--CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC----------------CCeehHHH-----
Q 004024 227 VKQKRLGDAKWIFDRMP--VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV----------------KDVFTWTA----- 283 (778)
Q Consensus 227 ~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~----------------~d~~~~~~----- 283 (778)
.+.|++++|..-|+... .||..+.-.|+-.+..-|+-++..+.|.+|.. |+....|.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 77888888888888765 56666665666667777888888888887642 11111221
Q ss_pred HHHHHHhcC--ChHHHHHHHHhCCCC----Cc-chHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCCh
Q 004024 284 MVSGYVQNG--KVDEARMIFDAMPEK----NT-VSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEI 356 (778)
Q Consensus 284 li~~~~~~g--~~~~A~~l~~~m~~~----~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~ 356 (778)
++.-.-+.. +.++++-.-.++..| |- .-+...+...-.....+.|.. .--.-.--|.+.|++
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d-----------lei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID-----------LEINKAGELLKNGDI 435 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh-----------hhhhHHHHHHhccCH
Confidence 111111111 112222222222222 10 001111111111111111110 001112347789999
Q ss_pred hHHHHHhhhCCCCCeeehhhHHH-----HHHhcC-ChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHH
Q 004024 357 THARNLFDRMPQHDCISWAAIIA-----GYAQSG-YSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHG 430 (778)
Q Consensus 357 ~~A~~~f~~m~~~d~~~~~~li~-----~~~~~g-~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 430 (778)
+.|.+++.-...+|..+-++-.. -|.+.| ++.+|-+.-+...... +-|....+.--+.....|++++|.+.+.
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 99999988887766544332221 233333 3445544443332211 1121222222223345789999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-
Q 004024 431 QLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV---DKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD- 506 (778)
Q Consensus 431 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd- 506 (778)
+.+...-.....+|| +.-.|-+.|++++|+..|-++. ..++.....+.+.|-...+..+|++++.+... +.|+
T Consensus 515 eal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~d 591 (840)
T KOG2003|consen 515 EALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPND 591 (840)
T ss_pred HHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCC
Confidence 988765443444444 2335788999999999998764 36777788888999999999999999987766 6675
Q ss_pred hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 004024 507 DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDAATWGALLGA 584 (778)
Q Consensus 507 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll~a 584 (778)
+....-+..-|-+.|+-.+|.+++..- |..-| +.++...|..-|....-+++|+..|++. -++|+.+-|.-++..
T Consensus 592 p~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmias 668 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 556777778899999999999987653 34444 7888888988899999999999999988 479999999999877
Q ss_pred H-HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCc
Q 004024 585 C-RLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRW 625 (778)
Q Consensus 585 ~-~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~ 625 (778)
| ++.||+..|...++.....-|++...+-.|..+....|..
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 6 6679999999999999999999999999999998888764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-13 Score=142.38 Aligned_cols=254 Identities=17% Similarity=0.155 Sum_probs=111.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHH-HhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 004024 378 IAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLS-TCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGS 456 (778)
Q Consensus 378 i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 456 (778)
...+.+.|++++|++++.+.......|+...|-.++. .+-..++.+.|.+.+..+...+-. ++..+..++.. ...|+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4445566666777766654433322345444444333 334566677777777777665422 55566677776 68899
Q ss_pred HHHHHHHHHhccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhHHHHHHHHHhccCcHHHHHHHHHHc
Q 004024 457 VEEAYHAFEEIVD--KDVISWNTMIAGYARHGFGKDALMLFESMKTVG-IKPDDITMVGILSACSHTGLVEKGTEYFYSM 533 (778)
Q Consensus 457 ~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 533 (778)
+++|.+++...-+ ++...|..++..+.+.|+++++.+++++..... ..++...|..+...+.+.|+.++|.+.++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999998887633 567778888999999999999999999987643 2345566777778889999999999999998
Q ss_pred hhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 004024 534 NRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNMP--FEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG 610 (778)
Q Consensus 534 ~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 610 (778)
.+. .| +......++.++...|+.+++.++++... .+.|+..|..+..++...|+.+.|...++++.+..|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 753 56 47778889999999999999888877661 2456778999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 611 MYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 611 ~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
....++.++...|+.++|.++++..-
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999987643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-11 Score=133.59 Aligned_cols=110 Identities=19% Similarity=0.264 Sum_probs=97.1
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 540 IPNSKHYTCMVDLLGRAGRLDEAQNLMKNM---PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 540 ~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
.-+.+.|.-+.++|.+.|++.+|++++..+ +..-+..+|--+...+...|.++.|...+++++.++|++..+-+.|+
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~La 490 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLA 490 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHH
Confidence 336788999999999999999999999888 22335779999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcchHHHHHHHHHhCCCccCCceeEE
Q 004024 617 NLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWL 649 (778)
Q Consensus 617 ~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i 649 (778)
.+|...|+.|+|.++...|-.-+.++.++|.|-
T Consensus 491 sl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 491 SLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 999999999999999998876666666777764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-09 Score=115.60 Aligned_cols=477 Identities=13% Similarity=0.098 Sum_probs=333.3
Q ss_pred CCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHHHHHHHHHhccc---CCccHhhHHHHHHHhcCChhHHHHHHhhCC
Q 004024 167 NGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKAN---WEVVSWNSLMGGFVKQKRLGDAKWIFDRMP 243 (778)
Q Consensus 167 ~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 243 (778)
....+.|+-++.+..+-=+. -.-|.-++++...++.|+.++....+ .+...|.+-...--.+|..+...++.++-.
T Consensus 389 lE~~~darilL~rAveccp~-s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl 467 (913)
T KOG0495|consen 389 LEEPEDARILLERAVECCPQ-SMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGL 467 (913)
T ss_pred ccChHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44444555555555421110 11222344455555556555544332 344455554444455555555555554432
Q ss_pred --------CCChhHHHHHHHHHhcCCCHHHHHHHHhhCC-----CC-CeehHHHHHHHHHhcCChHHHHHHHHhCCCC--
Q 004024 244 --------VRDEVSWNTMITGYAQNNYLAEAQRLFEEAP-----VK-DVFTWTAMVSGYVQNGKVDEARMIFDAMPEK-- 307 (778)
Q Consensus 244 --------~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~-----~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-- 307 (778)
.-+..-|-.=...+-..|..-.+..+..... +. --.+|+.-...|.+.+.++-|..+|...++-
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp 547 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP 547 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc
Confidence 1233344444444444555554444443322 11 2356888888888888888888888777653
Q ss_pred -CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCC---CeeehhhHHHH
Q 004024 308 -NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQH---DCISWAAIIAG 380 (778)
Q Consensus 308 -~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~ 380 (778)
+...|......--..|..+.-..++..++ +.....|-....-+-+.|++..|+.++++.-+. +...|-+-+..
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKl 627 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKL 627 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 56667777766677788888888888877 445566666677777788888888888776543 33567777888
Q ss_pred HHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 004024 381 YAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEA 460 (778)
Q Consensus 381 ~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 460 (778)
-..+.++++|..+|.+... ..|+...|.--+..---++..++|+++.+..++. ++.-...|..+...|-..++++.|
T Consensus 628 e~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred hhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHH
Confidence 8888888888888888775 3466665555555555677888888888877765 355566788888889999999999
Q ss_pred HHHHHhccC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhh
Q 004024 461 YHAFEEIVD--KD-VISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRD 536 (778)
Q Consensus 461 ~~~f~~m~~--~d-~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 536 (778)
+..|..-.+ |+ +-.|-.+...--+.|+.-.|..++++.... .| |...|...+..-.+.|+.++|........++
T Consensus 705 R~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 705 REAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999987765 44 456887777777888999999999988774 45 5668889999999999999999988887764
Q ss_pred cCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 537 YGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 537 ~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
.+-+...|.--|.+..+.++-..+.+.+++.. -|+.+.-+....+.....++.|...|++++..+|++..++..+-
T Consensus 783 --cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 783 --CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFY 858 (913)
T ss_pred --CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHH
Confidence 44466778888999999999888888888764 55666666667777788999999999999999999999999999
Q ss_pred HHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEE
Q 004024 617 NLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKV 655 (778)
Q Consensus 617 ~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~ 655 (778)
..+...|.-++-.+++++..... +.-|..|+-+...|
T Consensus 859 kfel~hG~eed~kev~~~c~~~E--P~hG~~W~avSK~i 895 (913)
T KOG0495|consen 859 KFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVSKDI 895 (913)
T ss_pred HHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHhhhH
Confidence 99999999999999998776543 34577777654443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-09 Score=109.41 Aligned_cols=469 Identities=15% Similarity=0.155 Sum_probs=274.2
Q ss_pred cCCChhHHHHHHhhCCC---CCcchHHHHHHHHHcCCChHHHHHHHHhcc--cCC-cchHHHHHHHHHhcCCHHHHHHHH
Q 004024 135 RNKSLSAARNLFEMMPK---RDVVSWNTMLSGYAQNGYADAARRIFDRML--EKN-EISWNGLLAAYVQNGRIEEACMLF 208 (778)
Q Consensus 135 ~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~d-~~t~~~ll~~~~~~g~~~~a~~~~ 208 (778)
..++...|+.+|++... ++...|---+.+=.++..+..|+.++++.+ -|- ...|--.+-+--..|++..|+++|
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 34566677777776653 445556656666666666667777766654 121 122333333334455666666666
Q ss_pred HhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCC--CCCeehHHHHHH
Q 004024 209 ESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAP--VKDVFTWTAMVS 286 (778)
Q Consensus 209 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~d~~~~~~li~ 286 (778)
++-.+. +||...|++.|..=.+...++.|+.++++.. .|++.+|--...
T Consensus 165 erW~~w-----------------------------~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyar 215 (677)
T KOG1915|consen 165 ERWMEW-----------------------------EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYAR 215 (677)
T ss_pred HHHHcC-----------------------------CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHH
Confidence 554432 4455555555555555555555555555432 345555544444
Q ss_pred HHHhcCChHHHHHHHHhCCCC------CcchHHHHHHHHhccCChHHHHHHHHhhc---ccc--ccHHHHHHHHHHhcCC
Q 004024 287 GYVQNGKVDEARMIFDAMPEK------NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKN--VASWNTMITGYAQSGE 355 (778)
Q Consensus 287 ~~~~~g~~~~A~~l~~~m~~~------~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~--~~~~~~Li~~y~k~g~ 355 (778)
.=-++|+..-|..+|....+. +...+++....-.....++.|.-++..++ +.+ ...+..+...=-+-|+
T Consensus 216 FE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 216 FEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred HHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence 444555555555555444331 22334444444444555666666666655 222 2333344333333444
Q ss_pred h---hHHHHH-----hhhCCCC---CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcc-------cccchHHHh-
Q 004024 356 I---THARNL-----FDRMPQH---DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRS-------PFTSVLSTC- 416 (778)
Q Consensus 356 ~---~~A~~~-----f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-------t~~~ll~a~- 416 (778)
. +++.-- ++.+... |-.+|--.+..-...|+.+...++|.+.... ++|-.- .|.-+=-+|
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHH
Confidence 2 222211 2222222 3345555555555567777777777766542 444211 121111121
Q ss_pred --cccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH----hcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHcCCh
Q 004024 417 --ANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYC----KCGSVEEAYHAFEEIVD--KDVISWNTMIAGYARHGFG 488 (778)
Q Consensus 417 --~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~----k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~ 488 (778)
....+.+..++++...++ -++...+++.-+=-||+ ++-++..|++++..... |-.-++...|..-.+.+.+
T Consensus 375 eEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ef 453 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREF 453 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhH
Confidence 234577778888887777 34556666666666665 66788888888887644 6666777777777888888
Q ss_pred HHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 004024 489 KDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMK 567 (778)
Q Consensus 489 ~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~ 567 (778)
+....++++.++ ..| |..+|.....--...|+.|.|..+|+-......+..-...|-..||-=...|.++.|..+++
T Consensus 454 DRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 454 DRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 889899988888 556 55677777766777889999999998887754444445567777777788899999999888
Q ss_pred hC-CCCCCHHHHHHHHHHHH-----HcC-----------ChHHHHHHHHHHHhc----CCCCC--chHHHHHHHhhhcCC
Q 004024 568 NM-PFEPDAATWGALLGACR-----LYG-----------KTELAEKAAEVIFEM----EPENA--GMYVLLSNLYAASGR 624 (778)
Q Consensus 568 ~m-~~~p~~~~~~~Ll~a~~-----~~g-----------~~~~a~~~~~~~~~l----~p~~~--~~y~~L~~~y~~~g~ 624 (778)
+. ...+..-+|-++..-=. ..+ +...|..+|+++... +|... ..+...-++-...|.
T Consensus 532 rlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~ 611 (677)
T KOG1915|consen 532 RLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGT 611 (677)
T ss_pred HHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence 77 33455557877653322 233 567788888887753 34321 223344556667788
Q ss_pred cchHHHHHHHHH
Q 004024 625 WGDVSKVRLKMR 636 (778)
Q Consensus 625 ~~~a~~~~~~m~ 636 (778)
-.+...+-+.|-
T Consensus 612 ~~d~~~V~s~mP 623 (677)
T KOG1915|consen 612 EGDVERVQSKMP 623 (677)
T ss_pred hhhHHHHHHhcc
Confidence 888887777764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-11 Score=130.35 Aligned_cols=272 Identities=16% Similarity=0.207 Sum_probs=138.5
Q ss_pred hHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHHHHHhhc------cccccHHHHHHHHHHhcCChh-HHHHHh
Q 004024 294 VDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFEAMT------CKNVASWNTMITGYAQSGEIT-HARNLF 363 (778)
Q Consensus 294 ~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~------~~~~~~~~~Li~~y~k~g~~~-~A~~~f 363 (778)
.++|+.+|.+.... ......-+..+|...+++++++.+|+.+. -.+..+|.+.+.-.-+.=.+. -|..+.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45555555553322 23444455556666666666666666555 223444544443322211111 122222
Q ss_pred hhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhH
Q 004024 364 DRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFV 443 (778)
Q Consensus 364 ~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 443 (778)
+.++ ..+.+|.++...|.-+++++.|++.|++..+-+ | ...+.
T Consensus 415 ~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p----------------------------------~faYa 457 (638)
T KOG1126|consen 415 DTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--P----------------------------------RFAYA 457 (638)
T ss_pred hhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--C----------------------------------ccchh
Confidence 2222 245677777777777777888877777765422 2 13344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCChhHHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhc
Q 004024 444 GNALLVMYCKCGSVEEAYHAFEEIVDKDVISWN---TMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSH 519 (778)
Q Consensus 444 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~---~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~ 519 (778)
|+-+..-+.....+|.|...|+.....|+..|| -+...|.+.++.+.|+-.|++..+ +.|. .+....+...+-+
T Consensus 458 yTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~ 535 (638)
T KOG1126|consen 458 YTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQ 535 (638)
T ss_pred hhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHH
Confidence 444444555556677777777776665554444 345567777777777777777766 5663 3334444444455
Q ss_pred cCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHH
Q 004024 520 TGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEK 596 (778)
Q Consensus 520 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~ 596 (778)
.|+.|+|+++++.+. .+.|. +-.---.+.++...++.+||+..+++. .+.|+ ..++..+...|++.|+.+.|..
T Consensus 536 ~k~~d~AL~~~~~A~---~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 536 LKRKDKALQLYEKAI---HLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred hhhhhHHHHHHHHHH---hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 555555555555543 22221 111112233344444555555444444 23333 2334444444445555555554
Q ss_pred HHHHHHhcCCC
Q 004024 597 AAEVIFEMEPE 607 (778)
Q Consensus 597 ~~~~~~~l~p~ 607 (778)
-+--+.+++|.
T Consensus 613 ~f~~A~~ldpk 623 (638)
T KOG1126|consen 613 HFSWALDLDPK 623 (638)
T ss_pred hhHHHhcCCCc
Confidence 44444444444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.7e-09 Score=110.57 Aligned_cols=475 Identities=12% Similarity=0.104 Sum_probs=347.7
Q ss_pred HHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcc---cCCcchHHHHHHHHHhcCCHHHHHHHH
Q 004024 132 GYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRML---EKNEISWNGLLAAYVQNGRIEEACMLF 208 (778)
Q Consensus 132 ~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~t~~~ll~~~~~~g~~~~a~~~~ 208 (778)
+-......++|+.++.+..+--+ +-.-|.-+|++..-++.|..++.... +.+...|.+-...--.+|+.+....+.
T Consensus 385 aAVelE~~~darilL~rAveccp-~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECCP-QSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 33445677778888887653111 11223445667777888888877765 668888888888788888888888887
Q ss_pred HhcccC----C----ccHhhHHHHHHHhcCChhHHHHHHhhCC------CCChhHHHHHHHHHhcCCCHHHHHHHHhhCC
Q 004024 209 ESKANW----E----VVSWNSLMGGFVKQKRLGDAKWIFDRMP------VRDEVSWNTMITGYAQNNYLAEAQRLFEEAP 274 (778)
Q Consensus 209 ~~~~~~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~ 274 (778)
.+.+.. | ...|-.=...+-..|..-.+..+..... +.-..+|+.-...+.+.+.++-|+.+|....
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 765431 2 2234444444444455544444444332 2234688888999999999999999987665
Q ss_pred C---CCeehHHHHHHHHHhcCChHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHH
Q 004024 275 V---KDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNT 345 (778)
Q Consensus 275 ~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~ 345 (778)
+ .+...|...+..=-..|..++-..+|++.... ....|....+-+-..|+...|+.++.++. +.+..+|-+
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwla 623 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLA 623 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHH
Confidence 3 35567887777777789999999999888753 55666666777777899999999999988 556678888
Q ss_pred HHHHHHhcCChhHHHHHhhhCCC--CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCccc-ccchHHHhcccccH
Q 004024 346 MITGYAQSGEITHARNLFDRMPQ--HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSP-FTSVLSTCANLASL 422 (778)
Q Consensus 346 Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~ 422 (778)
-+..-....+++.|+.+|.+... +....|.--+.----.+..++|++++++-.+. -|+-.- |..+-..+.+.+++
T Consensus 624 avKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHH
Confidence 89999999999999999998764 45556766666666678899999999887763 355443 33344456667777
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 423 ELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMK 499 (778)
Q Consensus 423 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 499 (778)
+.++..|..=.+. .+..+.+|-.|.+.=-+.|.+-.|+.+|++..- +|...|-..|..-.++|..+.|..+..+..
T Consensus 702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777766554333 366778899999999999999999999998754 477899999999999999999999998887
Q ss_pred HCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHH
Q 004024 500 TVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AAT 577 (778)
Q Consensus 500 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~ 577 (778)
+. ..-+..-|.--|...-+.+.-......+..- +-|+...-.+..++-...+++.|.+-|.+. ...|| ..+
T Consensus 781 Qe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~ 853 (913)
T KOG0495|consen 781 QE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDA 853 (913)
T ss_pred Hh-CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchH
Confidence 74 3344556666666666666655544444333 334555666777888888999999999877 56676 558
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 578 WGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 578 ~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
|.-+..-...||.-+.-..++.+...-+|.....+...+.
T Consensus 854 wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 854 WAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 9999999999999999999999999999998766665543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-09 Score=108.27 Aligned_cols=426 Identities=11% Similarity=0.110 Sum_probs=269.9
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcc----hHHHHH--HHHHcCCChhHH-HHHHhhCC---CCCcchHHHHH
Q 004024 92 SVSYNAMISGYLLNGQLDPARQVFDQMPQRDLV----SWNVMI--SGYVRNKSLSAA-RNLFEMMP---KRDVVSWNTML 161 (778)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~----~~~~li--~~~~~~g~~~~A-~~~f~~m~---~~d~~~~~~li 161 (778)
+.+-|.|+.+-+ +|.+.++.-+++.|...++- .--.|+ -.|..+.++.-| ++.|-.|. +....+|
T Consensus 116 V~~E~nL~kmIS-~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 116 VETENNLLKMIS-SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred hcchhHHHHHHh-hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 456788888765 58899999999999854322 122222 234455554433 35666675 3445555
Q ss_pred HHHHcCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHHHHHHHHHhcccC----CccHhhHHHHHHHhcCChhHHHH
Q 004024 162 SGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANW----EVVSWNSLMGGFVKQKRLGDAKW 237 (778)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~ 237 (778)
+.|.+.+ ++-+..+....|+.+||.+.++--..+.|.+++.+.... +..++|.+|.+-.-... .+
T Consensus 191 ----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KK 259 (625)
T ss_pred ----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HH
Confidence 3455544 666666778889999999999999999999999776543 34578888876544333 55
Q ss_pred HHhhCC----CCChhHHHHHHHHHhcCCCHHHHHHHHh----hCC----CCCeehHHHHHHHHHhcCChHH-HHHHHHhC
Q 004024 238 IFDRMP----VRDEVSWNTMITGYAQNNYLAEAQRLFE----EAP----VKDVFTWTAMVSGYVQNGKVDE-ARMIFDAM 304 (778)
Q Consensus 238 ~~~~m~----~~d~~~~~~li~~y~~~g~~~~A~~~f~----~m~----~~d~~~~~~li~~~~~~g~~~~-A~~l~~~m 304 (778)
+..+|. .||..|+|+++...++.|+++.|++.+- +|. +|...+|..+|..+.+.++..+ |..+..++
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 555554 7999999999999999999988776653 333 6888999999999999888754 44444433
Q ss_pred CC--------C----CcchHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCee
Q 004024 305 PE--------K----NTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCI 372 (778)
Q Consensus 305 ~~--------~----~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~ 372 (778)
+. | |...|.+.++.|.+..+.+.|.++++.....+.. ..-|.. ++ ..+
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~---------~~ig~~------~~-----~~f 399 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW---------KFIGPD------QH-----RNF 399 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch---------hhcChH------HH-----HHH
Confidence 21 1 6778899999999999999999999876621110 000100 00 112
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 004024 373 SWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYC 452 (778)
Q Consensus 373 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 452 (778)
-|..+....++....+.-+..|..|.-.-+-|+..+..-++.|....+.++....++..++..|......+..-+...++
T Consensus 400 Yyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 400 YYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 23445555667777777788888887777778888888888888888888888888888877764333222222221121
Q ss_pred hcCCHHHHHHHHHhccCCChh---HHHHHHHHHHHcCChHHH-HHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHH
Q 004024 453 KCGSVEEAYHAFEEIVDKDVI---SWNTMIAGYARHGFGKDA-LMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTE 528 (778)
Q Consensus 453 k~g~~~~A~~~f~~m~~~d~~---~~~~li~~~~~~g~~~~A-l~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 528 (778)
+.. +.|+.. -+.....-++. ++.++ ...-.+|.+....|. ..+.++.-+.+.|..++|++
T Consensus 480 ~~k------------~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~R~G~~qkA~e 543 (625)
T KOG4422|consen 480 RDK------------LHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQRAQDWPAT--SLNCIAILLLRAGRTQKAWE 543 (625)
T ss_pred cCC------------CCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHHhccCChh--HHHHHHHHHHHcchHHHHHH
Confidence 111 122211 12222111111 11222 222345555444443 44555556789999999999
Q ss_pred HHHHchhhcCCCCChHHHHHHHH---HHhhcCCHHHHHHHHHhC
Q 004024 529 YFYSMNRDYGVIPNSKHYTCMVD---LLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 529 ~~~~m~~~~~~~p~~~~y~~lv~---~l~r~g~~~eA~~~~~~m 569 (778)
+|....++..-.|.....++|+. .-.+....-.|...++-|
T Consensus 544 ~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 544 MLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99988766666666666665544 334455566666655544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.9e-11 Score=126.65 Aligned_cols=242 Identities=11% Similarity=0.097 Sum_probs=159.8
Q ss_pred hhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHH-HHHH
Q 004024 387 SEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVG--FEAGCFVGNALLVMYCKCGSVEE-AYHA 463 (778)
Q Consensus 387 ~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~k~g~~~~-A~~~ 463 (778)
.++|+.+|...... +.-......-+-.+|..+++.++++.+|+.+.+.. .-.+..+|++.+--+-+.=.+.. |..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 45555555553221 11122233334455666666666666666665432 11244455554433222111111 1222
Q ss_pred HHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC
Q 004024 464 FEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN 542 (778)
Q Consensus 464 f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 542 (778)
.+ +....+.+|-++...|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... ..+
T Consensus 414 i~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~ 485 (638)
T KOG1126|consen 414 ID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVD 485 (638)
T ss_pred Hh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCC
Confidence 22 2223567888888888888888888888888887 777 45677777777777778888888887644 457
Q ss_pred hHHHHHH---HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 543 SKHYTCM---VDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 543 ~~~y~~l---v~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
+.||+++ .-.|.+.++++.|+-.|+++ .+.|. .++...+...+...|..|+|...+++++-++|.|+-.-+..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 7777764 45677888888888888877 67775 4556666677777888888888888888888888888888888
Q ss_pred HhhhcCCcchHHHHHHHHHh
Q 004024 618 LYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 618 ~y~~~g~~~~a~~~~~~m~~ 637 (778)
++...++.++|...++.+++
T Consensus 566 il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH
Confidence 88888888888888888876
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-09 Score=112.34 Aligned_cols=183 Identities=14% Similarity=0.177 Sum_probs=133.1
Q ss_pred HHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHH
Q 004024 449 VMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVE 524 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~ 524 (778)
.+|....+.++-.+.|++..+ .|+.+|.--...+.-.+++++|+.=|++.+. +.|+. ..|..+-.+..+.+.++
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHH
Confidence 344455555555555554432 2334444444445555677777777877777 66754 46777777777888888
Q ss_pred HHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHHcCChHHH
Q 004024 525 KGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD---------AATWGALLGACRLYGKTELA 594 (778)
Q Consensus 525 ~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---------~~~~~~Ll~a~~~~g~~~~a 594 (778)
+....|+..+++ ++-.++.|+....+|...+++++|.+.++.. .++|+ +.+-.+++-.-. .+|+.+|
T Consensus 446 ~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a 522 (606)
T KOG0547|consen 446 ESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQA 522 (606)
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHH
Confidence 888888888774 4445677888899999999999999988765 44444 334444443322 3899999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 595 EKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 595 ~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
+.+.+++++++|....+|..|+.+-...|+.++|.++|+.-.
T Consensus 523 ~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 523 ENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=117.67 Aligned_cols=422 Identities=14% Similarity=0.160 Sum_probs=221.2
Q ss_pred HHHHHHcCCChhHHHHHHhhCCC----CCcch-HHHHHHHHHcCCChHHHHHHHHhcc--cCC------cchHHHHHHHH
Q 004024 129 MISGYVRNKSLSAARNLFEMMPK----RDVVS-WNTMLSGYAQNGYADAARRIFDRML--EKN------EISWNGLLAAY 195 (778)
Q Consensus 129 li~~~~~~g~~~~A~~~f~~m~~----~d~~~-~~~li~~~~~~g~~~~A~~~~~~m~--~~d------~~t~~~ll~~~ 195 (778)
|..-|.-+....+|+..|+-+.+ ||.-. --.+.+.+.+...+..|++.|+..+ -|. ....+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 33456666777888888876553 22211 1123455677788888888887665 121 22344444456
Q ss_pred HhcCCHHHHHHHHHhcccC--CccHhhHHHHHHHhcCChhHHHHHHhhCC----------------CCChhHHHHH----
Q 004024 196 VQNGRIEEACMLFESKANW--EVVSWNSLMGGFVKQKRLGDAKWIFDRMP----------------VRDEVSWNTM---- 253 (778)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------------~~d~~~~~~l---- 253 (778)
.+.|+++.|+.-|+...+. ++.+--.|+-++...|+-++.++.|.+|. .||....|.-
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 7889999999988887654 55565566667777888888888888875 1233333222
Q ss_pred -HHHHhcCCCH--HHH----HHHHhhCCCCCee---hHH------------------HHHHHHHhcCChHHHHHHHHhCC
Q 004024 254 -ITGYAQNNYL--AEA----QRLFEEAPVKDVF---TWT------------------AMVSGYVQNGKVDEARMIFDAMP 305 (778)
Q Consensus 254 -i~~y~~~g~~--~~A----~~~f~~m~~~d~~---~~~------------------~li~~~~~~g~~~~A~~l~~~m~ 305 (778)
+.-.-+...- +++ .++..-...||-. -|. .-..-|.++|+++.|++++.-..
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 2222222111 111 1121112222211 121 11224677888888888877776
Q ss_pred CCCcchHHHHHH------HHhccCChHHHHHHHHhhccccccHHHHHH---HHHHhcCChhHHHHHhhhCCCCCeeehhh
Q 004024 306 EKNTVSWNAMIA------GYVQTKRMDMARELFEAMTCKNVASWNTMI---TGYAQSGEITHARNLFDRMPQHDCISWAA 376 (778)
Q Consensus 306 ~~~~~t~~~ll~------~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li---~~y~k~g~~~~A~~~f~~m~~~d~~~~~~ 376 (778)
+.|..|-+.... ..-...++..|.+.-+..+..|-+--.++. +.-...|+++.|.+.+.+....|...-.+
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea 526 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA 526 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence 665544433322 222234566666666555533222222221 22334577777777777776665543333
Q ss_pred HHH---HHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 004024 377 IIA---GYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCK 453 (778)
Q Consensus 377 li~---~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 453 (778)
|.. .+-..|+.++|++.|-++..- +..+...+..+.+.|..+.+..+|.+++.++.. -++.|+.+.+-|.+.|-+
T Consensus 527 lfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 527 LFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhc
Confidence 322 345567777777777665431 122233344444555555555555555544432 245566666666666666
Q ss_pred cCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH-hccCcHHHHHHH
Q 004024 454 CGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSAC-SHTGLVEKGTEY 529 (778)
Q Consensus 454 ~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~~~ 529 (778)
.|+-..|.+..-.--. -|+.+-.=|..-|....-+++|+..|++..- ++|+.+-|-.++..| .+.|++.+|.++
T Consensus 605 egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 6666666555433211 1333322244445555555566666655544 555555555555444 344555555555
Q ss_pred HHHchhhcCCCCChHHHHHHHHHHhhc
Q 004024 530 FYSMNRDYGVIPNSKHYTCMVDLLGRA 556 (778)
Q Consensus 530 ~~~m~~~~~~~p~~~~y~~lv~~l~r~ 556 (778)
+....+ .++-+.+...-||.+.+..
T Consensus 683 yk~~hr--kfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 683 YKDIHR--KFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHH--hCccchHHHHHHHHHhccc
Confidence 555443 2233444444444444333
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.9e-10 Score=122.11 Aligned_cols=252 Identities=15% Similarity=0.018 Sum_probs=145.4
Q ss_pred hccCChHHHHHHHHhhc--cccccHHH--HHHHHHHhcCChhHHHHHhhhCCCC---CeeehhhHHHHHHhcCChhHHHH
Q 004024 320 VQTKRMDMARELFEAMT--CKNVASWN--TMITGYAQSGEITHARNLFDRMPQH---DCISWAAIIAGYAQSGYSEDSLR 392 (778)
Q Consensus 320 ~~~~~~~~a~~i~~~~~--~~~~~~~~--~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~ 392 (778)
...|+.+.+.+.+..+. .++....- .....+...|+.+.|...++++.+. +......+...|.+.|++++|++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 44555555555555544 22222111 2244566666666666666665442 23445556666677777777777
Q ss_pred HHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---
Q 004024 393 LFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--- 469 (778)
Q Consensus 393 l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--- 469 (778)
++.++.+.+..++.. +. ++- ...+..++....+..+.+...++++.++.
T Consensus 209 ~l~~l~k~~~~~~~~-~~----------------~l~-----------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~ 260 (398)
T PRK10747 209 ILPSMAKAHVGDEEH-RA----------------MLE-----------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR 260 (398)
T ss_pred HHHHHHHcCCCCHHH-HH----------------HHH-----------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh
Confidence 777776654321110 00 000 00111222222333344555555555543
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHH
Q 004024 470 KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCM 549 (778)
Q Consensus 470 ~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 549 (778)
.++..+..+..++...|+.++|.+++++..+ ..||.. ..++.+....++.+++.+..+...+.+. -|...+.++
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P--~~~~l~l~l 334 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHG--DTPLLWSTL 334 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCC--CCHHHHHHH
Confidence 3566667777777777777777777777766 344431 1123333344777777777777665422 244556677
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 550 VDLLGRAGRLDEAQNLMKNM-PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
..++.+.|++++|.+.|+.. ...|+...+..|..++...|+.+.|...+++.+++.
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 77777888888888777766 566777777777777788888888888888777653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-09 Score=117.94 Aligned_cols=285 Identities=13% Similarity=0.022 Sum_probs=152.2
Q ss_pred HhcCChHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHHHHHhhc--cccc--cHHHHHHHHHHhcCChhHHHH
Q 004024 289 VQNGKVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFEAMT--CKNV--ASWNTMITGYAQSGEITHARN 361 (778)
Q Consensus 289 ~~~g~~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~--~~~~--~~~~~Li~~y~k~g~~~~A~~ 361 (778)
...|+++.|.+.+.+..+. ....+.....+....|+.+.+.+.+..+. .|+. .+.-.....+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 3467778887777666543 22333444455666677777777777665 2332 233334566666777777777
Q ss_pred HhhhCCCC---CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCC
Q 004024 362 LFDRMPQH---DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFE 438 (778)
Q Consensus 362 ~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 438 (778)
.++.+.+. +...+..+...|.+.|++++|.+++.++.+.++.+.. .+..+-
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------- 228 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLE------------------------- 228 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHH-------------------------
Confidence 76666542 3344555666666666666666666666665422111 000000
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHH---HH
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITM---VG 512 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~---~~ 512 (778)
...+..+++.-......+...+.++..++ +++..+..+...+...|+.++|++++++..+ ..||.... ..
T Consensus 229 --~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l 304 (409)
T TIGR00540 229 --QKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLC 304 (409)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHH
Confidence 00111111111122233444455555543 3777888888888888888888888888887 45655421 11
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcC
Q 004024 513 ILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKN---MPFEPDAATWGALLGACRLYG 589 (778)
Q Consensus 513 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~---m~~~p~~~~~~~Ll~a~~~~g 589 (778)
........++.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|+. ....|+..++..|...+...|
T Consensus 305 ~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g 384 (409)
T TIGR00540 305 LPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAG 384 (409)
T ss_pred HHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcC
Confidence 11122233555555555555544322222223344555555555555555555552 234455555555555555555
Q ss_pred ChHHHHHHHHHHHh
Q 004024 590 KTELAEKAAEVIFE 603 (778)
Q Consensus 590 ~~~~a~~~~~~~~~ 603 (778)
+.+.|.+++++.++
T Consensus 385 ~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 385 DKAEAAAMRQDSLG 398 (409)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.2e-09 Score=107.47 Aligned_cols=350 Identities=13% Similarity=0.076 Sum_probs=233.4
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehh-hHHHHHHhcCC
Q 004024 308 NTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWA-AIIAGYAQSGY 386 (778)
Q Consensus 308 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~-~li~~~~~~g~ 386 (778)
|.+.+-...-.+-+.|....|...+...+..-+..|.+.+....-..+++.+..+-..++..+...-. -+..+|-...+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 55555555556667777888888877777655666766666665566666666555555443211111 12334555556
Q ss_pred hhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCC--HH-HHH
Q 004024 387 SEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGF--EAGCFVGNALLVMYCKCGS--VE-EAY 461 (778)
Q Consensus 387 ~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~k~g~--~~-~A~ 461 (778)
.++++.-.......|+.-+...-+-...+.-...++++|..+|+.+.+... -.|..+|+.++ |.+..+ +. -|.
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHHHH
Confidence 777777777777666543333333333334466788888888888877631 12455555544 333322 21 122
Q ss_pred HHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC
Q 004024 462 HAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVI 540 (778)
Q Consensus 462 ~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 540 (778)
.+++ +.+=-+.|...+.+-|+..++.++|+..|++..+ +.|.. ..|+.+..-|....+...|.+-++... .+.
T Consensus 321 ~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~ 394 (559)
T KOG1155|consen 321 NVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DIN 394 (559)
T ss_pred HHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcC
Confidence 2222 2222345566666777788888888888888877 66764 356666677888888888888888776 445
Q ss_pred C-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 541 P-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 541 p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
| |-..|-.|..+|.-.+...=|+-+|++. ..+| |..+|.+|...|.+.++.++|++.+++++.....+...|+.|++
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5 5666777888888888888888888877 5677 57899999999999999999999999999998888899999999
Q ss_pred HhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 004024 618 LYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQ 684 (778)
Q Consensus 618 ~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~ 684 (778)
+|-+.++.++|...++.-.+.-. . .| .-.|+..++...|.+-..+++.
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~--~----------------eg-~~~~~t~ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSE--L----------------EG-EIDDETIKARLFLAEYFKKMKD 522 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH--h----------------hc-ccchHHHHHHHHHHHHHHhhcc
Confidence 99999999999998876544210 0 01 1235566677777776666653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.7e-10 Score=120.17 Aligned_cols=244 Identities=9% Similarity=0.027 Sum_probs=172.6
Q ss_pred HhcCChhHHHHHHHHHhhcCcccCccccc--chHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 004024 382 AQSGYSEDSLRLFIEMKRYGERLNRSPFT--SVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEE 459 (778)
Q Consensus 382 ~~~g~~~~Al~l~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 459 (778)
.+.|++++|...|.++.+ ..|+..... .........|+.++|...++.+.+.. +.++.+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 455666666666666654 234433222 11234455566666666666665554 5567788888999999999999
Q ss_pred HHHHHHhccCCCh-----------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHH
Q 004024 460 AYHAFEEIVDKDV-----------ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTE 528 (778)
Q Consensus 460 A~~~f~~m~~~d~-----------~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 528 (778)
|.+++..+.+... ..|..++.......+.+...++++++-.. .+.+......+..++...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999888865321 13334444444455556666666665432 34466678888999999999999999
Q ss_pred HHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 004024 529 YFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEP 606 (778)
Q Consensus 529 ~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p 606 (778)
.+....+ ..|+.... ++......|+.+++.+.+++. ...|+ +..+.++...|...++++.|+..++++++.+|
T Consensus 285 ~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9988765 34554322 223333459999999999877 44565 55678889999999999999999999999999
Q ss_pred CCCchHHHHHHHhhhcCCcchHHHHHHHH
Q 004024 607 ENAGMYVLLSNLYAASGRWGDVSKVRLKM 635 (778)
Q Consensus 607 ~~~~~y~~L~~~y~~~g~~~~a~~~~~~m 635 (778)
++ ..|..|+.++.+.|+.++|.++++.-
T Consensus 360 ~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 360 DA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 97 66889999999999999999998754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-08 Score=100.30 Aligned_cols=405 Identities=15% Similarity=0.175 Sum_probs=247.4
Q ss_pred cCCchhhhHhhhhCCC---CChhhHHHHHHHHHhCCCchHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhHHHHHHh
Q 004024 74 NGCCDSALHVFNSMPR---RSSVSYNAMISGYLLNGQLDPARQVFDQMP---QRDLVSWNVMISGYVRNKSLSAARNLFE 147 (778)
Q Consensus 74 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~ 147 (778)
++....|..+|++.+. ++...|-..+.+=.++..+..|+.++++.. ++-.-.|-.-+-+=-..|++..|+++|+
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4556777788888775 455678888888889999999999999865 2223356666777777899999999998
Q ss_pred hCC--CCCcchHHHHHHHHHcCCChHHHHHHHHhcc--cCCcchHHHHHHHHHhcCCHHHHHHHHHhcccC--C----cc
Q 004024 148 MMP--KRDVVSWNTMLSGYAQNGYADAARRIFDRML--EKNEISWNGLLAAYVQNGRIEEACMLFESKANW--E----VV 217 (778)
Q Consensus 148 ~m~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~----~~ 217 (778)
+=. +||.-.|++.|+.=.+....+.|+.++++.+ .|++.+|.--..--.++|....++.+++.+++. + ..
T Consensus 166 rW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 166 RWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred HHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 743 7999999999999999999999999999876 899999988888888999999999999887753 1 12
Q ss_pred HhhHHHHHHHhcCChhHHHHHHhhCC---CCC--hhHHHHHHHHHhcCCCHHHHHHH--------HhhCCCC---CeehH
Q 004024 218 SWNSLMGGFVKQKRLGDAKWIFDRMP---VRD--EVSWNTMITGYAQNNYLAEAQRL--------FEEAPVK---DVFTW 281 (778)
Q Consensus 218 ~~~~li~~~~~~g~~~~A~~~~~~m~---~~d--~~~~~~li~~y~~~g~~~~A~~~--------f~~m~~~---d~~~~ 281 (778)
.+.+....-..+..++.|+-+|.-.. +.+ ...|......=-+-|+....... ++.+... |-.+|
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW 325 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH
Confidence 34455555555667777777664432 111 33343333333334443322222 2222222 33456
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCC----------CcchHHHHHHHH---hccCChHHHHHHHHhhc---cccccHHHH
Q 004024 282 TAMVSGYVQNGKVDEARMIFDAMPEK----------NTVSWNAMIAGY---VQTKRMDMARELFEAMT---CKNVASWNT 345 (778)
Q Consensus 282 ~~li~~~~~~g~~~~A~~l~~~m~~~----------~~~t~~~ll~~~---~~~~~~~~a~~i~~~~~---~~~~~~~~~ 345 (778)
-..+..-...|+.+...++|++.... -...|.-+=-+| ....+.+.+++++...+ +...+++.-
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaK 405 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAK 405 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHH
Confidence 66666666667777777777766532 111222111111 23456666777766655 555555555
Q ss_pred HHHHHH----hcCChhHHHHHhhhCCC--CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhccc
Q 004024 346 MITGYA----QSGEITHARNLFDRMPQ--HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANL 419 (778)
Q Consensus 346 Li~~y~----k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 419 (778)
+=-+|+ ++.++..|++++..... |-.-.+-..|..=.+.++++..-.+|.+...-+ +-|..++......=..+
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~L 484 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSL 484 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHh
Confidence 444443 45666666666665442 333444444555555566666666666665543 22334444444444455
Q ss_pred ccHHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhHHHHHH
Q 004024 420 ASLELGKQLHGQLVKV-GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDVISWNTMI 479 (778)
Q Consensus 420 ~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li 479 (778)
|+.+.++.++..++.. .++....++.+.|+.=..+|.++.|+.+++.+.+ +.+-+|-++.
T Consensus 485 gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 485 GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 6666666666655443 2344445555555555566666666666665544 2333454443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.8e-08 Score=99.95 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHH
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSA 516 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a 516 (778)
..+|+-+.+-|....+...|.+-++...+ +|-..|-.|..+|...+...=|+-.|++... .+|+ ...+.++...
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~C 441 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGEC 441 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHH
Confidence 33444445555555555555555554433 3445555555555555555555555555555 4553 2344455555
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 004024 517 CSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLM 566 (778)
Q Consensus 517 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~ 566 (778)
|.+.++.++|.+.|.....- | .-+...|..|.++|-+.++.++|...+
T Consensus 442 Y~kl~~~~eAiKCykrai~~-~-dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILL-G-DTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred HHHhccHHHHHHHHHHHHhc-c-ccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 55555555555555444321 1 112233444444444444444444433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-09 Score=119.68 Aligned_cols=277 Identities=12% Similarity=0.094 Sum_probs=196.3
Q ss_pred hcCCCHHHHHHHHhhCCCC--Ce-ehHHHHHHHHHhcCChHHHHHHHHhCCC--CCc--chHHHHHHHHhccCChHHHHH
Q 004024 258 AQNNYLAEAQRLFEEAPVK--DV-FTWTAMVSGYVQNGKVDEARMIFDAMPE--KNT--VSWNAMIAGYVQTKRMDMARE 330 (778)
Q Consensus 258 ~~~g~~~~A~~~f~~m~~~--d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~--~~~--~t~~~ll~~~~~~~~~~~a~~ 330 (778)
...|+++.|.+.+.+..+. +. ..+-....++.+.|++++|.+.+.+..+ |+. .........+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4689999999999887643 22 2233445667788999999999999754 333 233445778888999999999
Q ss_pred HHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeee---hhhH----HHHHHhcCChhHHHHHHHHHhhc
Q 004024 331 LFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCIS---WAAI----IAGYAQSGYSEDSLRLFIEMKRY 400 (778)
Q Consensus 331 i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~---~~~l----i~~~~~~g~~~~Al~l~~~m~~~ 400 (778)
.++.+. +.+..+...+...|.+.|++++|.+.+..+.+..+.. +..+ ..++...+..+++.+.+.++...
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999998 6677889999999999999999999999887653211 1100 00111111111111222222211
Q ss_pred CcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhH---H
Q 004024 401 GERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDVIS---W 475 (778)
Q Consensus 401 g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~---~ 475 (778)
.-+ ..+.++..+.+++..+...|+.++|.+++++..+ ||... +
T Consensus 255 -------------------------------~p~-~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 255 -------------------------------QPR-HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred -------------------------------CCH-HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH
Confidence 000 0124778888899999999999999999999866 44331 1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh--H-HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 476 NTMIAGYARHGFGKDALMLFESMKTVGIKPDDI--T-MVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 476 ~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~--t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
..........++.+++++.+++..+ ..|+.. . ..++...|.+.|++++|.++|+.... +...|+.+.+..+..+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~l 379 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADA 379 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHH
Confidence 2222233345788999999998887 577665 4 45778899999999999999995332 2567999999999999
Q ss_pred HhhcCCHHHHHHHHHhC
Q 004024 553 LGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m 569 (778)
+.+.|+.++|.+++++.
T Consensus 380 l~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 380 FDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 99999999999998863
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-11 Score=89.41 Aligned_cols=50 Identities=40% Similarity=0.666 Sum_probs=48.0
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 004024 470 KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSH 519 (778)
Q Consensus 470 ~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~ 519 (778)
||+++||++|.+|+++|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-09 Score=110.25 Aligned_cols=197 Identities=15% Similarity=0.127 Sum_probs=165.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHH
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGIL 514 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll 514 (778)
.....+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.+++..+. .| +...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 3456677788999999999999999998754 35678888899999999999999999999884 34 445677778
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChH
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTE 592 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~ 592 (778)
..+...|++++|.++|...............+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|+.+
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8899999999999999998764222234566778889999999999999999876 33444 667888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 593 LAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 593 ~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.|...+++++++.|.++..+..++.++...|++++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999998888899999999999999999999887765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.9e-08 Score=101.89 Aligned_cols=258 Identities=14% Similarity=0.094 Sum_probs=191.2
Q ss_pred ccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCee---ehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHH
Q 004024 338 KNVASWNTMITGYAQSGEITHARNLFDRMPQHDCI---SWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLS 414 (778)
Q Consensus 338 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~---~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~ 414 (778)
.++.+.....+-+..++++.+..++++.+.+.|+. .+..-|..+...|+..+-+.+=.+|.+.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-------------- 307 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-------------- 307 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--------------
Confidence 34444555555666667777777777766655443 2333455555666655555555555432
Q ss_pred HhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHHcCChHHH
Q 004024 415 TCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKD---VISWNTMIAGYARHGFGKDA 491 (778)
Q Consensus 415 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A 491 (778)
.|.....|-++.-.|--.|+.++|++.|.+...-| ...|-.....|+-.|..++|
T Consensus 308 ----------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQA 365 (611)
T KOG1173|consen 308 ----------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQA 365 (611)
T ss_pred ----------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHH
Confidence 24556667777777777899999999998875533 35799999999999999999
Q ss_pred HHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004024 492 LMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 492 l~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m 569 (778)
+..+...-+ +-| ....+.-+.--|.+.++.+.|.++|.+.. ++.| |+..++-+.-+.-..+.+.+|...|+..
T Consensus 366 maaY~tAar--l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~ 440 (611)
T KOG1173|consen 366 MAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKA 440 (611)
T ss_pred HHHHHHHHH--hccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHH
Confidence 999887766 333 34455666667889999999999998875 6666 4555666666666778888888887765
Q ss_pred --C------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 570 --P------FEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 570 --~------~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
+ -.+ -..+|+.|..+|++.+.+++|...+++.+.+.|.++.+|..++-+|...|+.+.|.+.+.+..
T Consensus 441 l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 441 LEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 1 112 245788899999999999999999999999999999999999999999999999999987654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-07 Score=98.00 Aligned_cols=305 Identities=12% Similarity=0.165 Sum_probs=171.2
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHhhCCC-----CCcchHHHHHHHHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHHc
Q 004024 92 SVSYNAMISGYLLNGQLDPARQVFDQMPQ-----RDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQ 166 (778)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~ 166 (778)
+..|-.-++...++|++..-+..|++... .-...|...+.-....|-++-+.+++++-.+-++..-+--|.-+++
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34677777788888888888888877541 2344688888888888888888888888777666667778888888
Q ss_pred CCChHHHHHHHHhcccC----------CcchHHHHHHHHHhcCCHHHH---HHHHHhcccC--C--ccHhhHHHHHHHhc
Q 004024 167 NGYADAARRIFDRMLEK----------NEISWNGLLAAYVQNGRIEEA---CMLFESKANW--E--VVSWNSLMGGFVKQ 229 (778)
Q Consensus 167 ~g~~~~A~~~~~~m~~~----------d~~t~~~ll~~~~~~g~~~~a---~~~~~~~~~~--~--~~~~~~li~~~~~~ 229 (778)
.++.++|.+.+...+.. +-..|.-+-...+++-+.... -.+++.++.. | -..|++|.+.|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 88888888888887633 233455555555554433322 2334444432 1 13577777777777
Q ss_pred CChhHHHHHHhhCCC--CChhHHHHHHHHHhcCCCHHHHHHHH-h---hCCCCCeehHHHHHHHHHh--cCChHHHHHHH
Q 004024 230 KRLGDAKWIFDRMPV--RDEVSWNTMITGYAQNNYLAEAQRLF-E---EAPVKDVFTWTAMVSGYVQ--NGKVDEARMIF 301 (778)
Q Consensus 230 g~~~~A~~~~~~m~~--~d~~~~~~li~~y~~~g~~~~A~~~f-~---~m~~~d~~~~~~li~~~~~--~g~~~~A~~l~ 301 (778)
|.++.|+.+|++... -.+.-++.+-+.|++-....-+..+= . ...+.|.+.+...+..+-. +++..-.-.++
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 777777777766441 12222344444444321111111110 0 0001122222222222111 01111111111
Q ss_pred HhCCCCCcchHHHHHHHHhccCChHHHHHHHHhhc---c------ccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCee
Q 004024 302 DAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMT---C------KNVASWNTMITGYAQSGEITHARNLFDRMPQHDCI 372 (778)
Q Consensus 302 ~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~------~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~ 372 (778)
-+-...++.+|..-+.. ..|+..+-...+.+++ . +-...|..+.+.|-..|+++.|+.+|++..+-+-.
T Consensus 342 LRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 00000134444443333 2345556666666665 1 12246788888999999999999999987764332
Q ss_pred -------ehhhHHHHHHhcCChhHHHHHHHHHh
Q 004024 373 -------SWAAIIAGYAQSGYSEDSLRLFIEMK 398 (778)
Q Consensus 373 -------~~~~li~~~~~~g~~~~Al~l~~~m~ 398 (778)
.|..-...=.++.+++.|+++.++..
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 34444444456677788888776654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-11 Score=124.10 Aligned_cols=249 Identities=14% Similarity=0.156 Sum_probs=85.4
Q ss_pred HHHHHhcCChhHHHHHhhhC-CC----CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhccccc
Q 004024 347 ITGYAQSGEITHARNLFDRM-PQ----HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLAS 421 (778)
Q Consensus 347 i~~y~k~g~~~~A~~~f~~m-~~----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 421 (778)
..++.+.|++++|.+++++. .. .|..-|..+.......++.++|+..++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 34444555555555555321 11 13333443444444445555555555555443311 22223333333 34455
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc-----CCChhHHHHHHHHHHHcCChHHHHHHHH
Q 004024 422 LELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV-----DKDVISWNTMIAGYARHGFGKDALMLFE 496 (778)
Q Consensus 422 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d~~~~~~li~~~~~~g~~~~Al~l~~ 496 (778)
.++|.++.....+. .+++..+..++..|.+.|+++++..+++... ..+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555554443322 1334445556666677777777777776643 2355667777777777777777777777
Q ss_pred HHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-
Q 004024 497 SMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP- 573 (778)
Q Consensus 497 ~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p- 573 (778)
+..+ ..|+ ......++..+...|+.+++.+++....+.. ..+...+..+..+|...|+.++|...+++. ...|
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 7777 5665 3455666677777777777777777665542 334455667777777777777777777766 2234
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 574 DAATWGALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 574 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
|+.+...+..++...|+.+.|..+.+++++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 455666777777777777777777776654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.2e-08 Score=105.32 Aligned_cols=372 Identities=14% Similarity=0.160 Sum_probs=196.7
Q ss_pred HHHHHHhhcCCchhhhHhh--hhCCCCChhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCCChhHHH
Q 004024 66 VAITTHMRNGCCDSALHVF--NSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAAR 143 (778)
Q Consensus 66 ~~~~~~~~~g~~~~A~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 143 (778)
+.|+.|.+.|++..|.+.. ++-+..|......+..++.+..-++.|-.+|+++..++-. +..|-+-.-+.+|+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dka-----le~fkkgdaf~kai 694 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKA-----LECFKKGDAFGKAI 694 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHH-----HHHHHcccHHHHHH
Confidence 5577888999888887543 2233456666666777777777778888888887755432 33333333344454
Q ss_pred HHHhhCCCCCcch----H--------------------HH---HHHHHHcCCChHHHHHHHHhcccCCcc--hHHHHHHH
Q 004024 144 NLFEMMPKRDVVS----W--------------------NT---MLSGYAQNGYADAARRIFDRMLEKNEI--SWNGLLAA 194 (778)
Q Consensus 144 ~~f~~m~~~d~~~----~--------------------~~---li~~~~~~g~~~~A~~~~~~m~~~d~~--t~~~ll~~ 194 (778)
++-+-.....+++ | |. .|.+......+..|+.+++.+...+.. -|.-+..-
T Consensus 695 elarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadh 774 (1636)
T KOG3616|consen 695 ELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADH 774 (1636)
T ss_pred HHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHH
Confidence 4433221111111 0 11 122223344445555555554433222 24555555
Q ss_pred HHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCC--hhHHHHHHHHHhcCCCHHHHHHHHhh
Q 004024 195 YVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRD--EVSWNTMITGYAQNNYLAEAQRLFEE 272 (778)
Q Consensus 195 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d--~~~~~~li~~y~~~g~~~~A~~~f~~ 272 (778)
|+..|+++.|.++|-+. ..++--|.+|.+.|++++|.++-.+...|. ..+|-+-..-.-+.|++.+|.+++-.
T Consensus 775 yan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 775 YANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred hccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 66666666666665432 234455566666666666666655554332 23344444445556666666666655
Q ss_pred CCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCC-CcchHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHH
Q 004024 273 APVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK-NTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYA 351 (778)
Q Consensus 273 m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~ 351 (778)
+..||. -|..|-+.|..++.+++..+-... -..|-..+..-+...|++..|..-|-+. .-|.+-++||-
T Consensus 850 i~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea-----~d~kaavnmyk 919 (1636)
T KOG3616|consen 850 IGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA-----GDFKAAVNMYK 919 (1636)
T ss_pred ccCchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh-----hhHHHHHHHhh
Confidence 555543 345566666666666655544322 2334455556666667777666655433 23556677777
Q ss_pred hcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHH
Q 004024 352 QSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQ 431 (778)
Q Consensus 352 k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 431 (778)
..+-+++|.++-..-...|..- .+.-..++.=-.+.|.+++++. |+ +...++-.+..+.++.|..+-+.
T Consensus 920 ~s~lw~dayriaktegg~n~~k--~v~flwaksiggdaavkllnk~---gl------l~~~id~a~d~~afd~afdlari 988 (1636)
T KOG3616|consen 920 ASELWEDAYRIAKTEGGANAEK--HVAFLWAKSIGGDAAVKLLNKH---GL------LEAAIDFAADNCAFDFAFDLARI 988 (1636)
T ss_pred hhhhHHHHHHHHhccccccHHH--HHHHHHHHhhCcHHHHHHHHhh---hh------HHHHhhhhhcccchhhHHHHHHH
Confidence 7777777777655433222211 1111122222235555555542 10 11122334455667777666665
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 004024 432 LVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKD 471 (778)
Q Consensus 432 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d 471 (778)
..+... +.+ .--+...+-..|++++|-+.+-+..+-|
T Consensus 989 ~~k~k~-~~v--hlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 989 AAKDKM-GEV--HLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhhccC-ccc--hhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 555432 222 2234445667899999988887766533
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-08 Score=99.74 Aligned_cols=303 Identities=13% Similarity=0.165 Sum_probs=195.5
Q ss_pred cCChHHHHHHHHhCCCCCcch---HHHHHHHHhccCChHHHHHHHHhhc-cccc------cHHHHHHHHHHhcCChhHHH
Q 004024 291 NGKVDEARMIFDAMPEKNTVS---WNAMIAGYVQTKRMDMARELFEAMT-CKNV------ASWNTMITGYAQSGEITHAR 360 (778)
Q Consensus 291 ~g~~~~A~~l~~~m~~~~~~t---~~~ll~~~~~~~~~~~a~~i~~~~~-~~~~------~~~~~Li~~y~k~g~~~~A~ 360 (778)
+.+.++|.++|-+|.+.|..| -.++.+.|-+.|..|.|..+|..+. .||. .+.-.|..-|.+.|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 467788888888887765444 4467778888888888888888877 4443 23445677788999999999
Q ss_pred HHhhhCCCCCee---ehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCC
Q 004024 361 NLFDRMPQHDCI---SWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGF 437 (778)
Q Consensus 361 ~~f~~m~~~d~~---~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 437 (778)
.+|..+.+.+.. ..-.|+..|-+..+|++|++.-+++...|-.+..+-.
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI---------------------------- 179 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI---------------------------- 179 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH----------------------------
Confidence 999998774443 4455788888888999999888888765533332211
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hHHHH
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKD---VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD--ITMVG 512 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~--~t~~~ 512 (778)
...|.-|...+.-..+++.|..++.+..+-| +..=-.+...+...|+++.|++.++...++ .|+. .+...
T Consensus 180 ---AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~ 254 (389)
T COG2956 180 ---AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEM 254 (389)
T ss_pred ---HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHH
Confidence 1123334455556677888888888775532 223333456678889999999999988884 4553 35566
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCh
Q 004024 513 ILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLM-KNMPFEPDAATWGALLGACRLYGKT 591 (778)
Q Consensus 513 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~-~~m~~~p~~~~~~~Ll~a~~~~g~~ 591 (778)
+..+|.+.|+.+++..++..+... .+....-..|.+......-.++|...+ +...-+|+...+..|+..
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~------- 324 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY------- 324 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh-------
Confidence 777888888888888877776543 233333333434333333333443333 223344554444433332
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEe
Q 004024 592 ELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSV 660 (778)
Q Consensus 592 ~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~ 660 (778)
.-.+ ++.|+|.+.....+.|....++..|.+-.-..+-+.|.|.-
T Consensus 325 -------------~l~d-----------aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W 369 (389)
T COG2956 325 -------------HLAD-----------AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYW 369 (389)
T ss_pred -------------hhcc-----------ccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeee
Confidence 1111 23466888888888888877888888777777777777754
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.2e-11 Score=87.90 Aligned_cols=50 Identities=26% Similarity=0.582 Sum_probs=47.3
Q ss_pred CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcc
Q 004024 369 HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCAN 418 (778)
Q Consensus 369 ~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~ 418 (778)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.1e-06 Score=89.78 Aligned_cols=448 Identities=15% Similarity=0.188 Sum_probs=272.6
Q ss_pred HHHhhcCCchhhhHhhhhCCCC-----ChhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCCChhHHH
Q 004024 69 TTHMRNGCCDSALHVFNSMPRR-----SSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAAR 143 (778)
Q Consensus 69 ~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 143 (778)
....++|+.....+.|++.+.. ....|...|......+-++-+.+++++-.+-++..-+--|.-+++.+++++|-
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHH
Confidence 3445788888888888776542 44578888888888899999999999887666666778888899999999999
Q ss_pred HHHhhCCCC----------CcchHHHHHHHHHcCCChH---HHHHHHHhcc--cCC--cchHHHHHHHHHhcCCHHHHHH
Q 004024 144 NLFEMMPKR----------DVVSWNTMLSGYAQNGYAD---AARRIFDRML--EKN--EISWNGLLAAYVQNGRIEEACM 206 (778)
Q Consensus 144 ~~f~~m~~~----------d~~~~~~li~~~~~~g~~~---~A~~~~~~m~--~~d--~~t~~~ll~~~~~~g~~~~a~~ 206 (778)
+.+...... +-..|+-+-+..+++-+.- ....+++.++ -+| .+.|++|.+-|.+.|.++.|..
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 998887633 3345666666666654433 3445566665 234 4579999999999999999999
Q ss_pred HHHhcccC--CccHhhHHHHHHHhcCChhHHHHHH-hh---CCCCChhHHHHHHHHHhc--CCCHHHHHHHHhhCCCCCe
Q 004024 207 LFESKANW--EVVSWNSLMGGFVKQKRLGDAKWIF-DR---MPVRDEVSWNTMITGYAQ--NNYLAEAQRLFEEAPVKDV 278 (778)
Q Consensus 207 ~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~-~~---m~~~d~~~~~~li~~y~~--~g~~~~A~~~f~~m~~~d~ 278 (778)
++++.+.. .+.-|+.+.+.|+....-.-+.++= .. -.+.|...+...+.-+.. ++...-.-.++-+-...++
T Consensus 270 vyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV 349 (835)
T KOG2047|consen 270 VYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNV 349 (835)
T ss_pred HHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccH
Confidence 99988764 3445667777776543322222221 00 001111111111111100 0111111111111112255
Q ss_pred ehHHHHHHHHHhcCChHHHHHHHHhCCCC---------CcchHHHHHHHHhccCChHHHHHHHHhhccccc-------cH
Q 004024 279 FTWTAMVSGYVQNGKVDEARMIFDAMPEK---------NTVSWNAMIAGYVQTKRMDMARELFEAMTCKNV-------AS 342 (778)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~-------~~ 342 (778)
..|..-+.. ..|+..+-...|.+..+. -...|..+.+.|-..|+++.|+.+|+.....+- .+
T Consensus 350 ~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~v 427 (835)
T KOG2047|consen 350 EEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEV 427 (835)
T ss_pred HHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHH
Confidence 566555543 346666666666665432 234688889999999999999999999883333 34
Q ss_pred HHHHHHHHHhcCChhHHHHHhhhCCC-CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhccccc
Q 004024 343 WNTMITGYAQSGEITHARNLFDRMPQ-HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLAS 421 (778)
Q Consensus 343 ~~~Li~~y~k~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 421 (778)
|-.-..+=.+..+++.|+++.++... |... . -.|..++.+-.+ .+++.+ ..|+-.++.-...|.
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~vP~~~----~-~~~yd~~~pvQ~-rlhrSl---------kiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATHVPTNP----E-LEYYDNSEPVQA-RLHRSL---------KIWSMYADLEESLGT 492 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcCCCch----h-hhhhcCCCcHHH-HHHHhH---------HHHHHHHHHHHHhcc
Confidence 55555555666678888888776542 2110 0 223333333222 122211 123333344445677
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC----CCh-hHHHHHHHHHHHc---CChHHHHH
Q 004024 422 LELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD----KDV-ISWNTMIAGYARH---GFGKDALM 493 (778)
Q Consensus 422 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----~d~-~~~~~li~~~~~~---g~~~~Al~ 493 (778)
++..+.+++.++...+.....+-| ....+-...-++++.+++++-.. |++ ..||.-+.-+... -+.+.|..
T Consensus 493 festk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 888888888888877654443333 22234455568888888887654 554 3688777655532 36788999
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHH--hccCcHHHHHHHHHHchh
Q 004024 494 LFESMKTVGIKPDDITMVGILSAC--SHTGLVEKGTEYFYSMNR 535 (778)
Q Consensus 494 l~~~m~~~g~~pd~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~ 535 (778)
+|++..+ |..|...-+.-++-|- -.-|+...|+.+++....
T Consensus 572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999888 6777766554454432 234777777777776543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-07 Score=104.98 Aligned_cols=467 Identities=12% Similarity=0.126 Sum_probs=251.8
Q ss_pred CCCcchHHHHHHHHHcCCChhHHHHHHhhCCC----CCcchHHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHHHHHH
Q 004024 120 QRDLVSWNVMISGYVRNKSLSAARNLFEMMPK----RDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAY 195 (778)
Q Consensus 120 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~ 195 (778)
.||-+||.+||.-|+..|+.+.|- +|.-|.- -+...++.++.+..+.++.+.+. .|-+-||+.|+.+|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAY 93 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHH
Confidence 466677777777777777777666 6665542 23345666666666666665553 45566677777777
Q ss_pred HhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCC-
Q 004024 196 VQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAP- 274 (778)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~- 274 (778)
...|++.. ++..++ -. -.++..+...|....-..++-.+.
T Consensus 94 r~hGDli~-fe~veq-------dL-------------------------------e~i~~sfs~~Gvgs~e~~fl~k~~c 134 (1088)
T KOG4318|consen 94 RIHGDLIL-FEVVEQ-------DL-------------------------------ESINQSFSDHGVGSPERWFLMKIHC 134 (1088)
T ss_pred HhccchHH-HHHHHH-------HH-------------------------------HHHHhhhhhhccCcHHHHHHhhccc
Confidence 77766554 111111 00 112222233333333333322211
Q ss_pred CC-CeehHHHHHHHHHhcCChHHHHHHHHhCCCC--CcchHHHHHHHHhccC-ChHHHHHHHHhhc-cccccHHHHHHHH
Q 004024 275 VK-DVFTWTAMVSGYVQNGKVDEARMIFDAMPEK--NTVSWNAMIAGYVQTK-RMDMARELFEAMT-CKNVASWNTMITG 349 (778)
Q Consensus 275 ~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~t~~~ll~~~~~~~-~~~~a~~i~~~~~-~~~~~~~~~Li~~ 349 (778)
.| ....-...+.-..-.|.++.+++++..|... +. ++..+++-+.... .+++-..+-.... .+++.++.++++.
T Consensus 135 ~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~ 213 (1088)
T KOG4318|consen 135 CPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKR 213 (1088)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHH
Confidence 11 0001112233333445555555555555432 11 1111233322221 1222222222222 4788888888888
Q ss_pred HHhcCChhHHHHHhhhCCCCCe----eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHH
Q 004024 350 YAQSGEITHARNLFDRMPQHDC----ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELG 425 (778)
Q Consensus 350 y~k~g~~~~A~~~f~~m~~~d~----~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 425 (778)
-.-.|+++.|..++.+|.++.. .-+-.++-| .+....+..+++-|+..|+.|+..|+.--+-.|...|....+
T Consensus 214 alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 214 ALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred HHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc
Confidence 8888999999999988887543 223334444 777788888899999999999999988777776664443322
Q ss_pred HHH-----------HHHHH----------------------H---cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 004024 426 KQL-----------HGQLV----------------------K---VGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD 469 (778)
Q Consensus 426 ~~i-----------~~~~~----------------------~---~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 469 (778)
... ...+. + .|+.....+|.-.+. ....|.-++..++-..+..
T Consensus 291 ~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~n 369 (1088)
T KOG4318|consen 291 EEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLN 369 (1088)
T ss_pred ccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcC
Confidence 211 00000 0 133322233322221 1224555566666555543
Q ss_pred C-------ChhHHHHHHHHHHHcC----------------------ChHHHHHHHHHHHHCCCCCChh------------
Q 004024 470 K-------DVISWNTMIAGYARHG----------------------FGKDALMLFESMKTVGIKPDDI------------ 508 (778)
Q Consensus 470 ~-------d~~~~~~li~~~~~~g----------------------~~~~Al~l~~~m~~~g~~pd~~------------ 508 (778)
| ++..+..++.-|.+.- +..+..++... ..||..
T Consensus 370 pt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~El 444 (1088)
T KOG4318|consen 370 PTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTEL 444 (1088)
T ss_pred CccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHH
Confidence 2 3334444443332211 11111111111 123321
Q ss_pred ----------------HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--
Q 004024 509 ----------------TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMP-- 570 (778)
Q Consensus 509 ----------------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-- 570 (778)
.-..++.+|...-+..++...-+.... +-+ ...|..||+.+.+..++++|..+..+..
T Consensus 445 er~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~ 520 (1088)
T KOG4318|consen 445 ERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTR 520 (1088)
T ss_pred hcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHHHhchhhhccc
Confidence 112233334433333444332222211 111 2568999999999999999999998884
Q ss_pred ---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCccCC
Q 004024 571 ---FEPDAATWGALLGACRLYGKTELAEKAAEVIFEM---EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVT 644 (778)
Q Consensus 571 ---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l---~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~ 644 (778)
+.-|..-+..+.....+++....+..+.+...+. +|.-......+-|--+.+|+.+...+..+.....|+.. .
T Consensus 521 d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-t 599 (1088)
T KOG4318|consen 521 DESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-T 599 (1088)
T ss_pred chhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-c
Confidence 2234455777888888888888888888777652 34444556677788889999999999999999988876 4
Q ss_pred ceeE
Q 004024 645 GYSW 648 (778)
Q Consensus 645 g~s~ 648 (778)
|--|
T Consensus 600 gPl~ 603 (1088)
T KOG4318|consen 600 GPLW 603 (1088)
T ss_pred ccce
Confidence 5444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-06 Score=91.70 Aligned_cols=408 Identities=19% Similarity=0.173 Sum_probs=223.4
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCCc-chHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHH
Q 004024 160 MLSGYAQNGYADAARRIFDRMLEKNE-ISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWI 238 (778)
Q Consensus 160 li~~~~~~g~~~~A~~~~~~m~~~d~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 238 (778)
.|.+|....++++|+.+-+..-.|.. ..-.+.+.++...|+-+.|-++-. .+- --.+-|..|.+.|.+-.|.+.
T Consensus 563 aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~----sdg-d~laaiqlyika~~p~~a~~~ 637 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKE----SDG-DGLAAIQLYIKAGKPAKAARA 637 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhcc----ccC-ccHHHHHHHHHcCCchHHHHh
Confidence 45566666666666665554433321 122334445555555555544321 111 123557778888887777655
Q ss_pred Hhh--CCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeeh---------------------------HHHHHHHHH
Q 004024 239 FDR--MPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFT---------------------------WTAMVSGYV 289 (778)
Q Consensus 239 ~~~--m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~---------------------------~~~li~~~~ 289 (778)
-.. ....|......+..++.+...++.|-.+|+++..+|-.. -......+.
T Consensus 638 a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~ 717 (1636)
T KOG3616|consen 638 ALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLE 717 (1636)
T ss_pred hcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHH
Confidence 321 123344444555555555555566666666555432210 001111222
Q ss_pred hcCChHHHHHHHHhCCCCCcchHHHHHHHHhccCChHHHHHHHHhhcccc--ccHHHHHHHHHHhcCChhHHHHHhhhCC
Q 004024 290 QNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKN--VASWNTMITGYAQSGEITHARNLFDRMP 367 (778)
Q Consensus 290 ~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 367 (778)
+.|+++.|+.-|-+.. .....+.+......+.+|..+++.+...+ .-.|..+.+-|+..|+++.|+++|-+..
T Consensus 718 ~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~ 792 (1636)
T KOG3616|consen 718 QIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD 792 (1636)
T ss_pred HHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc
Confidence 2333333333332211 11112233334444555555555444222 1224444455555555555555554332
Q ss_pred CCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHH
Q 004024 368 QHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNAL 447 (778)
Q Consensus 368 ~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L 447 (778)
.++--|..|.++|++++|.++-.+-. |-+.....|-+-
T Consensus 793 -----~~~dai~my~k~~kw~da~kla~e~~-------------------------------------~~e~t~~~yiak 830 (1636)
T KOG3616|consen 793 -----LFKDAIDMYGKAGKWEDAFKLAEECH-------------------------------------GPEATISLYIAK 830 (1636)
T ss_pred -----hhHHHHHHHhccccHHHHHHHHHHhc-------------------------------------CchhHHHHHHHh
Confidence 23334455555555555554433221 222334445455
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHHH
Q 004024 448 LVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD--ITMVGILSACSHTGLVEK 525 (778)
Q Consensus 448 i~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~ 525 (778)
..-.-+.|++.+|++++-.+..|+.. |..|-++|..++.+++.++- .||. .|-..+..-+-..|++..
T Consensus 831 aedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lka 900 (1636)
T KOG3616|consen 831 AEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKA 900 (1636)
T ss_pred HHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhH
Confidence 55566788999999998888888753 77889999999998888763 4443 355566667778899999
Q ss_pred HHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC---CC-HHHHHHHH------HHHHHcCChHHHH
Q 004024 526 GTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFE---PD-AATWGALL------GACRLYGKTELAE 595 (778)
Q Consensus 526 a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~---p~-~~~~~~Ll------~a~~~~g~~~~a~ 595 (778)
|.+.|-+... |..-+++|-.++.|++|.++-+.-+-. .. ...|.--+ ..+-+||-++.|.
T Consensus 901 ae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~i 970 (1636)
T KOG3616|consen 901 AEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAI 970 (1636)
T ss_pred HHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHh
Confidence 9888866532 677889999999999999988765311 11 23443222 2234556555554
Q ss_pred HHH------HHHHhc-----CCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 596 KAA------EVIFEM-----EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 596 ~~~------~~~~~l-----~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
..+ +-++++ ...-+..++.++..+...|++++|.+.+-...+.+
T Consensus 971 d~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 971 DFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 322 222222 23345678888999999999999988776555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-08 Score=115.18 Aligned_cols=211 Identities=12% Similarity=-0.014 Sum_probs=160.9
Q ss_pred ccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHH
Q 004024 420 ASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDALMLFE 496 (778)
Q Consensus 420 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~ 496 (778)
+++++|...+..+++.. +.+...+..+..++...|++++|...|++..+ | +...|..+...|...|++++|+..++
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44677777777777664 55677888888899999999999999999865 4 45678889999999999999999999
Q ss_pred HHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 004024 497 SMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP 573 (778)
Q Consensus 497 ~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p 573 (778)
+..+ +.|+.. .+..++.++...|+.++|...+..+... ..| +...+..+...|...|+.++|...++++ +..|
T Consensus 397 ~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 397 ECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred HHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 9998 677654 3334455567789999999999987653 234 3555777888999999999999999887 5556
Q ss_pred CHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 574 DAA-TWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 574 ~~~-~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
+.. .++.|...+...| +.+...++++++..-..+.....+..+|+-.|+-+.+..+ +.+.+.
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 644 4555555666666 4788888888875544444444588899999999998888 666554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.9e-07 Score=96.33 Aligned_cols=446 Identities=15% Similarity=0.097 Sum_probs=236.2
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHhh--CCCCCcchHHHHHHHHHcCCChhHHHHHHhhCCC-CCcchHHHHHHHHHc
Q 004024 90 RSSVSYNAMISGYLLNGQLDPARQVFDQ--MPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPK-RDVVSWNTMLSGYAQ 166 (778)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~ 166 (778)
.|+..---+.++|.-.|....|..+... +...|.....-....+.+..+++.|..+...-.. .+++++-.-=. +.
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~--~~ 124 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA--AN 124 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh--hc
Confidence 3444444566777777777776665543 4466777777777778888888888888774321 11211110000 00
Q ss_pred CCChHHHHHHHHhcccCCcch--HHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCC
Q 004024 167 NGYADAARRIFDRMLEKNEIS--WNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPV 244 (778)
Q Consensus 167 ~g~~~~A~~~~~~m~~~d~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (778)
.-..+.+. ++...+..+ +-.-.+.|......++|++.+.+++..|+..+.++...-... +-.+.+.|+.+..
T Consensus 125 ~l~~n~~~----~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~--mlt~~Ee~~ll~~ 198 (611)
T KOG1173|consen 125 TLELNSAG----EDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAH--MLTAQEEFELLES 198 (611)
T ss_pred eeccCccc----ccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHH--hcchhHHHHHHhc
Confidence 00000000 111111111 111112345556677888888887777766554443322221 1112122222222
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHHhh----C---------C-------CCCeehHHHHHHHHHhcCChHHHHHHHHhC
Q 004024 245 RDEVSWNTMITGYAQNNYLAEAQRLFEE----A---------P-------VKDVFTWTAMVSGYVQNGKVDEARMIFDAM 304 (778)
Q Consensus 245 ~d~~~~~~li~~y~~~g~~~~A~~~f~~----m---------~-------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 304 (778)
.|....+ ..+.+.-+.+|+- + + ..|+...-.-..-+...+++.+..++++..
T Consensus 199 l~~a~~~--------~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~l 270 (611)
T KOG1173|consen 199 LDLAMLT--------KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEEL 270 (611)
T ss_pred ccHHhhh--------hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHH
Confidence 2211100 0011111112210 0 0 123333444555677788899999999888
Q ss_pred CCC---CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCe---eehh
Q 004024 305 PEK---NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDC---ISWA 375 (778)
Q Consensus 305 ~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~---~~~~ 375 (778)
.+. ....+..-|.++...|+..+-..+=..++ |....+|-++.--|.-.|..++|++.|.+...-|. ..|-
T Consensus 271 le~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl 350 (611)
T KOG1173|consen 271 LEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWL 350 (611)
T ss_pred HhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHH
Confidence 765 33344455667777777666555555555 66778899999888888999999999988765443 4788
Q ss_pred hHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 004024 376 AIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCG 455 (778)
Q Consensus 376 ~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g 455 (778)
.....|+-.|..+.|+..|...-+-= +-..-.+--+---|.+.++++.|.+.+.++.... +.|+.+
T Consensus 351 ~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv------------ 416 (611)
T KOG1173|consen 351 AFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLV------------ 416 (611)
T ss_pred HHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchh------------
Confidence 88888999999999988887654420 0000001111112334444444444444443322 334444
Q ss_pred CHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCC---C-ChhHHHHHHHHHhccCcHHHHHHH
Q 004024 456 SVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTV--GIK---P-DDITMVGILSACSHTGLVEKGTEY 529 (778)
Q Consensus 456 ~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~--g~~---p-d~~t~~~ll~a~~~~g~~~~a~~~ 529 (778)
.+-+.-..-..+.+.+|..+|+..... .+. + -..+++.+..+|.+.+..++|+..
T Consensus 417 -------------------~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 417 -------------------LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred -------------------hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 444444334444455555555444310 000 1 123455555666666666666666
Q ss_pred HHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 004024 530 FYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDAATWGALLGACR 586 (778)
Q Consensus 530 ~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll~a~~ 586 (778)
|+.... -.+-+..+|+.+.-.|.-.|+++.|.+.|.+. .++||..+-..+|+.+.
T Consensus 478 ~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 478 YQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 665543 12225666667777777777777777777665 56777766666666544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-06 Score=92.86 Aligned_cols=182 Identities=14% Similarity=0.093 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHH-cCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHH
Q 004024 442 FVGNALLVMYCKCGSVEEAYHAFEEIVD--KDVISWNTMIAGYAR-HGFGKDALMLFESMKTVGIKPDD--ITMVGILSA 516 (778)
Q Consensus 442 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~-~g~~~~Al~l~~~m~~~g~~pd~--~t~~~ll~a 516 (778)
.--++|+.+|. +..+.+++.-...+. |....=+.+..++-. .....+|.+++...-+ -.|+. +.....+.-
T Consensus 310 ~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl 385 (652)
T KOG2376|consen 310 YRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQL 385 (652)
T ss_pred HHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHH
Confidence 34466777775 556677777776655 333333333333332 2357778888877766 34554 334444455
Q ss_pred HhccCcHHHHHHHHH--------HchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHH
Q 004024 517 CSHTGLVEKGTEYFY--------SMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM--------PFEPD-AATWG 579 (778)
Q Consensus 517 ~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~-~~~~~ 579 (778)
....|+++.|.+++. .+.+ .+- .+.+-..++.++.+.+.-+-|-.++.+. +-++. ..+|.
T Consensus 386 ~is~gn~~~A~~il~~~~~~~~ss~~~-~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~ 462 (652)
T KOG2376|consen 386 KISQGNPEVALEILSLFLESWKSSILE-AKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMR 462 (652)
T ss_pred HHhcCCHHHHHHHHHHHhhhhhhhhhh-hcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 678899999999988 4432 233 3445667888888888755555554433 32333 23444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHH
Q 004024 580 ALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKV 631 (778)
Q Consensus 580 ~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~ 631 (778)
-+..-=.++|+-+.|...++++++..|++....+.|.-.|+... .+.|..+
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 44455567899999999999999999999999999999988763 4455444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.9e-08 Score=95.12 Aligned_cols=209 Identities=14% Similarity=0.169 Sum_probs=135.0
Q ss_pred CChHHHHHHHHhcccCCcchH---HHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCC
Q 004024 168 GYADAARRIFDRMLEKNEISW---NGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPV 244 (778)
Q Consensus 168 g~~~~A~~~~~~m~~~d~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (778)
...++|.++|-+|.+.|..|+ -+|.+.|.+.|..+.|+.+|....+.--.|++-
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~q----------------------- 105 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQ----------------------- 105 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHH-----------------------
Confidence 455566666666664444433 455566666666666766666554431111110
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCe---ehHHHHHHHHHhcCChHHHHHHHHhCCCCCcc--------hHH
Q 004024 245 RDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDV---FTWTAMVSGYVQNGKVDEARMIFDAMPEKNTV--------SWN 313 (778)
Q Consensus 245 ~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--------t~~ 313 (778)
-....-.|..-|...|-+|.|+.+|..+.+.+. .....|+..|-+..+|++|++.-+++.+-+.. .|.
T Consensus 106 -r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 106 -RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred -HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 112234456667777888888888877765333 34556788888888888888887766553222 344
Q ss_pred HHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCee----ehhhHHHHHHhcCC
Q 004024 314 AMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCI----SWAAIIAGYAQSGY 386 (778)
Q Consensus 314 ~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~----~~~~li~~~~~~g~ 386 (778)
-+...+....+.+.|+.++..+. +..+.+.-.+.+.+...|+++.|.+.++.+.+.|.. .-..|..+|.+.|+
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 44455555677888888888777 455666666778888888888888888888776652 45566777888888
Q ss_pred hhHHHHHHHHHhhc
Q 004024 387 SEDSLRLFIEMKRY 400 (778)
Q Consensus 387 ~~~Al~l~~~m~~~ 400 (778)
+++.+..+.++.+.
T Consensus 265 ~~~~~~fL~~~~~~ 278 (389)
T COG2956 265 PAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHHHHHc
Confidence 88888877777654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-07 Score=94.41 Aligned_cols=279 Identities=14% Similarity=0.069 Sum_probs=159.7
Q ss_pred cCChHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHHHHHHHHhcCChhHHHHHh
Q 004024 291 NGKVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNTMITGYAQSGEITHARNLF 363 (778)
Q Consensus 291 ~g~~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~Li~~y~k~g~~~~A~~~f 363 (778)
.|++.+|.++..+-.+. ....|.....+.-..|+.+.+-++..++- .++..+.-+........|+++.|+.-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 36666666666554332 33344444555566666666666666665 223344555556666777777777666
Q ss_pred hhCC---CCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCc
Q 004024 364 DRMP---QHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAG 440 (778)
Q Consensus 364 ~~m~---~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 440 (778)
+++. .++..........|.+.|++.+.+.++.+|.+.|+--|+. ..++ .
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e-----------------~~~l-----------e 228 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE-----------------AARL-----------E 228 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH-----------------HHHH-----------H
Confidence 6543 3455666777777888888888888888887776433321 1111 1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSAC 517 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~ 517 (778)
..+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++-.+.+..|+ ...+-.+
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~ 304 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPR 304 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhh
Confidence 12233333333333333333344454443 3455555666666677777777777777666666665 2223345
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004024 518 SHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDAATWGALLGACRLYGKTELAEK 596 (778)
Q Consensus 518 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 596 (778)
...++.+.-.+..+.-.+.++..| ..+.+|..+|.+.+.|.+|.+.++.. +..|+...|.-+..++-..|+.+.|..
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 555555555555555555445444 44556666666666666666666644 556666666666666666666666666
Q ss_pred HHHHHHh
Q 004024 597 AAEVIFE 603 (778)
Q Consensus 597 ~~~~~~~ 603 (778)
..+..+-
T Consensus 383 ~r~e~L~ 389 (400)
T COG3071 383 VRREALL 389 (400)
T ss_pred HHHHHHH
Confidence 6665553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-05 Score=86.75 Aligned_cols=258 Identities=18% Similarity=0.211 Sum_probs=165.5
Q ss_pred CCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHch
Q 004024 455 GSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMN 534 (778)
Q Consensus 455 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 534 (778)
|++|.|.+.-++..+ +..|..+..+-.+.|...+|++-|-+ .-|+..|.-++.++++.|.+++-.+++....
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445555544444433 45799999999999999999998843 2356789999999999999999999998776
Q ss_pred hhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 004024 535 RDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVL 614 (778)
Q Consensus 535 ~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~ 614 (778)
++ .-+|.++ +.|+-+|++.+++.|-++++. -|+..-......-|...|.++.|.-.+.. .+.|..
T Consensus 1161 kk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~ 1225 (1666)
T KOG0985|consen 1161 KK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAK 1225 (1666)
T ss_pred Hh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHH
Confidence 65 6677665 479999999999999999984 67888888889999999999988887753 467888
Q ss_pred HHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeC-------CEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCc
Q 004024 615 LSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQ-------NKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGF 687 (778)
Q Consensus 615 L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~-------~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~gy 687 (778)
|+..+...|.+..|...-++...-..-|+.+...|+-+ .-+|--+ | ..+|++|.+.-.+.||
T Consensus 1226 La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iiv-----h------adeLeeli~~Yq~rGy 1294 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIV-----H------ADELEELIEYYQDRGY 1294 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEE-----e------hHhHHHHHHHHHhcCc
Confidence 88888888888877765444433333233332222210 0011111 1 1356777777777777
Q ss_pred ccCCCccccccchhhHhhhhhhhhHHHHHHHhhhCCCC--------CCcEEEEecccccCccchhhHHh
Q 004024 688 VYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYGILSIPA--------GRPIRVMKNLRVCEDCHNAIKHI 748 (778)
Q Consensus 688 ~p~~~~~~~~~~~~~k~~~l~~hse~la~~~gl~~~~~--------~~~i~i~knlr~c~dch~~~k~~ 748 (778)
--..-..+..--.=|+.++- .- --|||-|+--.... .+.+-|-|=+|-|..-|-+..++
T Consensus 1295 FeElIsl~Ea~LGLERAHMg-mf-TELaiLYskykp~km~EHl~LFwsRvNipKviRA~eqahlW~Elv 1361 (1666)
T KOG0985|consen 1295 FEELISLLEAGLGLERAHMG-MF-TELAILYSKYKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELV 1361 (1666)
T ss_pred HHHHHHHHHhhhchhHHHHH-HH-HHHHHHHHhcCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 43321111000000111110 01 11444443221100 23455668899999888776554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-07 Score=95.45 Aligned_cols=197 Identities=14% Similarity=0.119 Sum_probs=136.4
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 004024 372 ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMY 451 (778)
Q Consensus 372 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 451 (778)
..+..+...|...|++++|+..|++..... | .+...+..+...|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p----------------------------------~~~~~~~~la~~~ 75 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD--P----------------------------------DDYLAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--c----------------------------------ccHHHHHHHHHHH
Confidence 345566677777788888888877775432 2 2334555566777
Q ss_pred HhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHH
Q 004024 452 CKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGT 527 (778)
Q Consensus 452 ~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~ 527 (778)
...|++++|.+.|++..+ .+...|..+...|...|++++|++.|++.......|. ...+..+...+...|+.++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 777888888888876643 3455677777778888888888888888776432232 334555666777888888888
Q ss_pred HHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 528 EYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 528 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
+.|....+.. +.+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|+.+.|....+.+.+..
T Consensus 156 ~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 156 KYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 8888776531 223566777888888888888888888776 2223 45566677777778888888888888776654
Q ss_pred C
Q 004024 606 P 606 (778)
Q Consensus 606 p 606 (778)
|
T Consensus 234 ~ 234 (234)
T TIGR02521 234 P 234 (234)
T ss_pred c
Confidence 4
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.5e-08 Score=102.10 Aligned_cols=211 Identities=14% Similarity=0.090 Sum_probs=154.9
Q ss_pred ccHHHHHHHHHHHHHcC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHH
Q 004024 420 ASLELGKQLHGQLVKVG-FEA--GCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALM 493 (778)
Q Consensus 420 ~~~~~a~~i~~~~~~~g-~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~ 493 (778)
+..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45666777776776432 222 245677788889999999999999998865 367899999999999999999999
Q ss_pred HHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-
Q 004024 494 LFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-P- 570 (778)
Q Consensus 494 l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~- 570 (778)
.|++..+ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 77864 5777888888999999999999998875 3554432222333455678899999999654 2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-------hcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 571 FEPDAATWGALLGACRLYGKTELAEKAAEVIF-------EMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 571 ~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~-------~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
..|+...|. ......|+...+ ..++.+. ++.|+.+.+|..|+.+|...|++++|...+++..+..
T Consensus 195 ~~~~~~~~~---~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGWN---IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHHH---HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233333332 222335665444 2444444 5667777899999999999999999999998877643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7e-07 Score=92.71 Aligned_cols=182 Identities=15% Similarity=0.085 Sum_probs=142.3
Q ss_pred HHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHH
Q 004024 450 MYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEK 525 (778)
Q Consensus 450 ~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~ 525 (778)
.+.-+|+.-.|..-|+.... | ++..|--+...|++..+.++-...|.+... +.| |..+|-.-.....-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHHH
Confidence 45678999999999998865 3 333388888999999999999999999988 666 45567666666667788999
Q ss_pred HHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 526 GTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM--PFEPDAATWGALLGACRLYGKTELAEKAAEVIF 602 (778)
Q Consensus 526 a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~ 602 (778)
|..-|+..+ .+.| ++..|-.+.-++.|.+++++++..|++. .++.-+.+|+-....+..+++++.|.+.+++++
T Consensus 413 A~aDF~Kai---~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 413 AIADFQKAI---SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHh---hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 999998876 5666 4667777888888999999999999987 333446688888888999999999999999999
Q ss_pred hcCCC------CCchHHHHHHHhhh-cCCcchHHHHHHHHH
Q 004024 603 EMEPE------NAGMYVLLSNLYAA-SGRWGDVSKVRLKMR 636 (778)
Q Consensus 603 ~l~p~------~~~~y~~L~~~y~~-~g~~~~a~~~~~~m~ 636 (778)
+|+|. ++.+++.=+-+..+ .++.+.|.++.....
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~ 530 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAI 530 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHH
Confidence 99999 77777765554443 255556666655443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-08 Score=110.39 Aligned_cols=263 Identities=13% Similarity=0.149 Sum_probs=192.2
Q ss_pred HHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 004024 392 RLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKD 471 (778)
Q Consensus 392 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d 471 (778)
.++-.|+..|+.||.+||.+++.-|+..|+.+.|- ++..|.-..++.+..++++++......|+.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888999999999999999999999999999 9999988888999999999999999999887775 788
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
..+|+.|..+|++||+... ++..++ -...+...++..|.-..-..++..+.-..+..||... .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 8999999999999999866 333333 1233445566667666666666655444456666543 556
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHH
Q 004024 552 LLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYG-KTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSK 630 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g-~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~ 630 (778)
.+.-.|.++.+.++...+|...-.......|.-|..-. .++.-....+.+.+ .| ++.+|..+...-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 66778999999999999984432111111355555544 34444444444445 34 45888888888899999999999
Q ss_pred HHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCCcc
Q 004024 631 VRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLV 694 (778)
Q Consensus 631 ~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~gy~p~~~~~ 694 (778)
+...|+++|..-.|.+-|--+- |..+- .-++...+-|.+.|..|+.+.+
T Consensus 226 ll~emke~gfpir~HyFwpLl~--------g~~~~-------q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLL--------GINAA-------QVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhh--------cCccc-------hHHHHHHHHHHHhcCCCCcchh
Confidence 9999999999776665554332 22222 2455667788899999987643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.1e-08 Score=109.05 Aligned_cols=177 Identities=14% Similarity=0.002 Sum_probs=140.9
Q ss_pred cCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHH
Q 004024 454 CGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEY 529 (778)
Q Consensus 454 ~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~ 529 (778)
.|++++|...+++..+ .+...|..+...+...|++++|+..|++..+ +.|+. ..+..+..++...|+.++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3568999999998865 3677888888899999999999999999999 67875 4677778889999999999999
Q ss_pred HHHchhhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 530 FYSMNRDYGVIPNS-KHYTCMVDLLGRAGRLDEAQNLMKNMP--FEPD-AATWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 530 ~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
++...+ +.|+. ..+..+...+...|++++|.+.+++.- ..|+ +..+..+..++...|+.++|+..++++....
T Consensus 395 ~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 999875 45543 223334445677899999999988762 2354 4456677777788999999999999998888
Q ss_pred CCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 606 PENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 606 p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
|.+......|+..|...| ++|...++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 988888888988998888 477776666554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-07 Score=103.70 Aligned_cols=191 Identities=20% Similarity=0.246 Sum_probs=143.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCChh-
Q 004024 446 ALLVMYCKCGSVEEAYHAFEEIVD-------K----DVISWNTMIAGYARHGFGKDALMLFESMKT-----VGIKPDDI- 508 (778)
Q Consensus 446 ~Li~~y~k~g~~~~A~~~f~~m~~-------~----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~-----~g~~pd~~- 508 (778)
.+..+|...+++++|..+|+++.. + -..+++.|...|...|++++|...+++..+ .|..+..+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 466788888888888888887743 1 134677777888889988888777776543 23333332
Q ss_pred -HHHHHHHHHhccCcHHHHHHHHHHchhhcC--CCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC-------C--CC
Q 004024 509 -TMVGILSACSHTGLVEKGTEYFYSMNRDYG--VIPN----SKHYTCMVDLLGRAGRLDEAQNLMKNM-------P--FE 572 (778)
Q Consensus 509 -t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~--~~ 572 (778)
-++.+...|.+.+.+++|..++....+.+. ..++ ..+|+.|..+|-..|+++||++++++. . ..
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 366777789999999999999987766544 2222 467999999999999999999999877 1 12
Q ss_pred CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCCCC---chHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 573 PD-AATWGALLGACRLYGKTELAEKAAEVIFE----MEPENA---GMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 573 p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~----l~p~~~---~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
+. ....+-|..+|...++.+.|.++|+.... ..|+++ .+|..|+-+|...|++++|.++-....
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33 44677888999889999999999988765 345554 467889999999999999999866553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5e-06 Score=84.69 Aligned_cols=267 Identities=11% Similarity=0.011 Sum_probs=184.9
Q ss_pred cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhH---HHHHHhcCChhHHHHHHHHHhhcCcccCcccccchH
Q 004024 337 CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAI---IAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVL 413 (778)
Q Consensus 337 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~l---i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll 413 (778)
+.|+....++.+.|...|+.++|...|++...-|+.+..+| .-.+.+.|+.+.--.+...+.... +-....|..-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 67888899999999999999999999998776665544443 223566788887777777665421 01111111111
Q ss_pred HHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc--C-CChhHHHHHHHHHHHcCChHH
Q 004024 414 STCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV--D-KDVISWNTMIAGYARHGFGKD 490 (778)
Q Consensus 414 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~-~d~~~~~~li~~~~~~g~~~~ 490 (778)
...-...+.+.|..+-+..++.. +.++..+-.-...+...|+.++|.-.|+... . -+..+|.-|+..|...|...+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 22234456666666666665543 2223333222345566799999999998764 3 378899999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHH-HHH-hccCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHH
Q 004024 491 ALMLFESMKTVGIKPDDITMVGIL-SAC-SHTGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLMK 567 (778)
Q Consensus 491 Al~l~~~m~~~g~~pd~~t~~~ll-~a~-~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~ 567 (778)
|+.+-+..... +..+..+...+. ..| -....-++|.+++++-. .+.|+ ...-+.+..++.+.|+.+++..+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 99888776552 222333443331 222 23344678888887654 55675 4445667788889999999999998
Q ss_pred hC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 004024 568 NM-PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 568 ~m-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
+. ...||....+.|....+..+.+..|...|..++.++|++-
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 76 5678999999999999999999999999999999999983
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.3e-06 Score=88.38 Aligned_cols=120 Identities=9% Similarity=0.144 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhhCCCCC-eeehhhHHHHHH--hcCChhHHHHHHHHHhhcCcccCcccc--cchHHHh
Q 004024 342 SWNTMITGYAQSGEITHARNLFDRMPQHD-CISWAAIIAGYA--QSGYSEDSLRLFIEMKRYGERLNRSPF--TSVLSTC 416 (778)
Q Consensus 342 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~d-~~~~~~li~~~~--~~g~~~~Al~l~~~m~~~g~~pd~~t~--~~ll~a~ 416 (778)
.-++|+.+|. +..+.++++-...+... ...+.+++.... +...+.+|.+++...-+. .|+.... ...+...
T Consensus 311 ~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 311 RNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHH
Confidence 3455666664 44566666666666533 223333333322 222455666665554432 2332211 2222334
Q ss_pred cccccHHHHHHHHH--------HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 004024 417 ANLASLELGKQLHG--------QLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEI 467 (778)
Q Consensus 417 ~~~~~~~~a~~i~~--------~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 467 (778)
...|+++.|.+++. .+.+.+.. +.+..+++.+|.+.++-+.|..++++.
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHH
Confidence 56677777777776 33333333 334456777777777777777777654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-06 Score=89.45 Aligned_cols=250 Identities=15% Similarity=0.153 Sum_probs=184.9
Q ss_pred cCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004024 384 SGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHA 463 (778)
Q Consensus 384 ~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 463 (778)
.|++..|.++..+-.+.+-.|- ..|.....|.-..|+.+.+..+..++.+..-+++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4667777777666555443321 233334445556777777777777777764466777777788888888999988887
Q ss_pred HHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-------hHHHHHHHHHhccCcHHHHHHHHHHc
Q 004024 464 FEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-------ITMVGILSACSHTGLVEKGTEYFYSM 533 (778)
Q Consensus 464 f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-------~t~~~ll~a~~~~g~~~~a~~~~~~m 533 (778)
.++..+ ++.........+|.+.|++.+.+.+..+|.+.|+--|+ .++.+++.-+.+.+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 776543 67788888899999999999999999999998866553 46888888888888887777777776
Q ss_pred hhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 004024 534 NRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMY 612 (778)
Q Consensus 534 ~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y 612 (778)
.. ...-++..-.+++.-|.++|..++|.+++++. +-.-|+. -..+-.|..-+|.+.-++.+++.+...|++|..+
T Consensus 256 pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 256 PR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred cH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 55 33445666778888899999999999988766 3222333 2223455667788888888888888889888888
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 613 VLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 613 ~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
..|+.+|.+.+.|.+|.+.++...+.
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 89999999999999998888865553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-07 Score=87.04 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=125.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHH
Q 004024 475 WNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDL 552 (778)
Q Consensus 475 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~ 552 (778)
...+.-+|.+.|+...|.+-+++.++ ..|+. .++..+...|...|..+.|.+.|+... .+.| +-+..|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 33455667777777777777777776 55654 366666667777777777777777665 3445 45566777777
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 553 LGRAGRLDEAQNLMKNMPFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
|+..|++++|...|++.-..|+ ..+|..+..+..+.|+.+.|+..+++.++++|+.+.+...+++.....|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 8888899999999888733333 558888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 004024 629 SKVRLKMRDRGV 640 (778)
Q Consensus 629 ~~~~~~m~~~g~ 640 (778)
...++....+|.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998887664
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.6e-07 Score=93.40 Aligned_cols=226 Identities=12% Similarity=-0.008 Sum_probs=149.8
Q ss_pred CChhHHHHHHHHHhhcC-cccCc--ccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004024 385 GYSEDSLRLFIEMKRYG-ERLNR--SPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAY 461 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g-~~pd~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 461 (778)
+..+.++.-+.++.... ..|+. ..|...-..+...|..++|...+...++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44555666666655432 11221 123333444556677777777776666654 456788899999999999999999
Q ss_pred HHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcC
Q 004024 462 HAFEEIVD--K-DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYG 538 (778)
Q Consensus 462 ~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 538 (778)
..|++..+ | +..+|..+...+...|++++|++.|++..+ ..|+.......+..+...++.++|.+.|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99999865 3 467888899999999999999999999988 677654322223334567889999999976543 2
Q ss_pred CCCChHHHHHHHHHHhhcCCH--HHHHHHHHhC-C----CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-C
Q 004024 539 VIPNSKHYTCMVDLLGRAGRL--DEAQNLMKNM-P----FEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN-A 609 (778)
Q Consensus 539 ~~p~~~~y~~lv~~l~r~g~~--~eA~~~~~~m-~----~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~-~ 609 (778)
..|+... ..++..+ .|++ +++.+.+.+- . ..| ...+|..|...+...|+.+.|+..++++++++|.+ .
T Consensus 195 ~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 3343322 2333333 3444 3333333321 1 122 24589999999999999999999999999999754 3
Q ss_pred chHHHHHHH
Q 004024 610 GMYVLLSNL 618 (778)
Q Consensus 610 ~~y~~L~~~ 618 (778)
..-..+..+
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 333344443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.9e-07 Score=99.27 Aligned_cols=200 Identities=18% Similarity=0.188 Sum_probs=140.8
Q ss_pred hHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 004024 376 AIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCG 455 (778)
Q Consensus 376 ~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g 455 (778)
.+...|...+++++|..+|+++...- ....-...+.-..+++.|...|.+.|
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~----------------------------e~~~G~~h~~va~~l~nLa~ly~~~G 297 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIR----------------------------EEVFGEDHPAVAATLNNLAVLYYKQG 297 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHH----------------------------HHhcCCCCHHHHHHHHHHHHHHhccC
Confidence 45566777888888888888776420 00000001112334455666788888
Q ss_pred CHHHHHHHHHhccC----------CChh-HHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCh----hHHHHHHHHH
Q 004024 456 SVEEAYHAFEEIVD----------KDVI-SWNTMIAGYARHGFGKDALMLFESMKTV---GIKPDD----ITMVGILSAC 517 (778)
Q Consensus 456 ~~~~A~~~f~~m~~----------~d~~-~~~~li~~~~~~g~~~~Al~l~~~m~~~---g~~pd~----~t~~~ll~a~ 517 (778)
++++|...+++..+ +.+. -.+.++..|...+++++|..++++..+. -..++. -++..+...+
T Consensus 298 Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~ 377 (508)
T KOG1840|consen 298 KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY 377 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 88888777776532 2333 3566777788889999999998876442 133444 3688888899
Q ss_pred hccCcHHHHHHHHHHchhhc-----CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHH
Q 004024 518 SHTGLVEKGTEYFYSMNRDY-----GVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM--------PFEPD-AATWGALL 582 (778)
Q Consensus 518 ~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~-~~~~~~Ll 582 (778)
-+.|.+++|.++|+++.+.. +..+ ...+++-|...|.+.++.++|.++|.+. |-.|+ ..+|..|.
T Consensus 378 ~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 378 LKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 99999999999999876542 2222 2456788888999999999898888765 34556 45899999
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 004024 583 GACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 583 ~a~~~~g~~~~a~~~~~~~~~ 603 (778)
..|+..|++|.|+++.+++..
T Consensus 458 ~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 458 ALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999998874
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3e-06 Score=94.97 Aligned_cols=293 Identities=12% Similarity=0.055 Sum_probs=172.1
Q ss_pred cccHHHHHHHHHHh----cC----ChhHHHHHhhhCC---CCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcc
Q 004024 339 NVASWNTMITGYAQ----SG----EITHARNLFDRMP---QHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRS 407 (778)
Q Consensus 339 ~~~~~~~Li~~y~k----~g----~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~ 407 (778)
+..+|..|+.-|.+ +| +...|...+.+.. ..+...||+|--. ...|.+.-|.--|-+-... .+-+..
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~ 851 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHC 851 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchh
Confidence 34555555544433 22 2235666666543 3566778877655 5556666666555544432 233556
Q ss_pred cccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc-----c---CCChhHHHHHH
Q 004024 408 PFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEI-----V---DKDVISWNTMI 479 (778)
Q Consensus 408 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m-----~---~~d~~~~~~li 479 (778)
+|..+--.|....+++.|.+.+..+.... +.+..-+--..-.-...|+.-++..+|..- . .++..-|-.-.
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t 930 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT 930 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence 77777777788888888888888776543 233333322222234567777777777652 1 14566666655
Q ss_pred HHHHHcCChHHHHHHHHHHHH---------CCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH
Q 004024 480 AGYARHGFGKDALMLFESMKT---------VGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV 550 (778)
Q Consensus 480 ~~~~~~g~~~~Al~l~~~m~~---------~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 550 (778)
.-..++|+.++-+...++.-. .|..-+...|.......-|.+...++.+...+...-...+-+...|+...
T Consensus 931 e~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak 1010 (1238)
T KOG1127|consen 931 EIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK 1010 (1238)
T ss_pred HHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 566677776654444333221 12333456777777778888888887777666543223334555666443
Q ss_pred ----HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH---HHHhhhcC
Q 004024 551 ----DLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLL---SNLYAASG 623 (778)
Q Consensus 551 ----~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L---~~~y~~~g 623 (778)
.++...|.++.|..-+...+.+-|..+-++-++. ...|+++.+...+++++.+--.+...-+++ +.....+|
T Consensus 1011 ~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~ 1089 (1238)
T KOG1127|consen 1011 PDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLAR 1089 (1238)
T ss_pred hhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcc
Confidence 3444467788777777666666666555555544 456789999999999998765554433333 33444566
Q ss_pred CcchHHHHHHHH
Q 004024 624 RWGDVSKVRLKM 635 (778)
Q Consensus 624 ~~~~a~~~~~~m 635 (778)
.-+.|....-..
T Consensus 1090 ~k~~A~~lLfe~ 1101 (1238)
T KOG1127|consen 1090 QKNDAQFLLFEV 1101 (1238)
T ss_pred cchHHHHHHHHH
Confidence 666776654333
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.3e-07 Score=90.27 Aligned_cols=228 Identities=13% Similarity=0.082 Sum_probs=149.3
Q ss_pred hhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 004024 375 AAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKC 454 (778)
Q Consensus 375 ~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~ 454 (778)
+.|..+|.+.|.+.+|.+.|+.-...- |-..||.-+-.+|.+..+.+.|..++..-.+. ++-|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 567888999999999999888877654 33345555555666666666666655554443 233444444444555555
Q ss_pred CCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHH
Q 004024 455 GSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFY 531 (778)
Q Consensus 455 g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 531 (778)
++.++|.++++...+ .++.+...+..+|.-.|+++-|+..++++.+.|+. +..-|..+.-.|...+++|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 556666666555543 23344444455555555666666666666555543 33344555555555555555444444
Q ss_pred HchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 004024 532 SMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 532 ~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
..... | -.|+ ..+|-.|......-||+..|.+.++-.+.-+|++.
T Consensus 383 RAlst--------------------------------a-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALST--------------------------------A-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHhh--------------------------------c-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 33221 1 1344 45788888888888999999999999999999999
Q ss_pred chHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 610 GMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 610 ~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
..|+.|+-+-.+.|+.++|..++...++..
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999999888753
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00014 Score=80.21 Aligned_cols=231 Identities=15% Similarity=0.112 Sum_probs=137.7
Q ss_pred HhhcCCchhhhHhhhhCCCCChhhHHHHHHHHHhCCCchHHHHHHhhCCC-------------CCcchHHHHHHHHHcCC
Q 004024 71 HMRNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQ-------------RDLVSWNVMISGYVRNK 137 (778)
Q Consensus 71 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-------------~~~~~~~~li~~~~~~g 137 (778)
|..-|..+.|.+..+.+ .+..+|..|.++|.+.++++-|.-.+..|.. ++ ..-......-...|
T Consensus 738 yvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred EEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 45556666665433332 3456788999999998888888877777752 21 11111222234568
Q ss_pred ChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcccC-CcchHHHHHHHHHhcCCHHHHHHHHHhcccCC-
Q 004024 138 SLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEK-NEISWNGLLAAYVQNGRIEEACMLFESKANWE- 215 (778)
Q Consensus 138 ~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~- 215 (778)
.+++|..+|++..+-| .|=..|-..|.+++|.++-+.--+- =..||..-..-+-..++.+.|++.|++.-.+-
T Consensus 815 MlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~haf 889 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAF 889 (1416)
T ss_pred hHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHH
Confidence 8888888888776543 3455677788888888876643211 12356666666667778888888877543221
Q ss_pred ----------------------ccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhC
Q 004024 216 ----------------------VVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEA 273 (778)
Q Consensus 216 ----------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m 273 (778)
...|.--....-..|+.+.|+.++... .-|-+++...|-.|+.++|-++-++-
T Consensus 890 ev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-----~D~fs~VrI~C~qGk~~kAa~iA~es 964 (1416)
T KOG3617|consen 890 EVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-----KDYFSMVRIKCIQGKTDKAARIAEES 964 (1416)
T ss_pred HHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-----hhhhhheeeEeeccCchHHHHHHHhc
Confidence 111222222223456666666666542 23555666666666666666665553
Q ss_pred CCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhc
Q 004024 274 PVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQ 321 (778)
Q Consensus 274 ~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~ 321 (778)
. |.....-|...|-..|++.+|+.+|-+. .+|...|+.|-.
T Consensus 965 g--d~AAcYhlaR~YEn~g~v~~Av~FfTrA-----qafsnAIRlcKE 1005 (1416)
T KOG3617|consen 965 G--DKAACYHLARMYENDGDVVKAVKFFTRA-----QAFSNAIRLCKE 1005 (1416)
T ss_pred c--cHHHHHHHHHHhhhhHHHHHHHHHHHHH-----HHHHHHHHHHHh
Confidence 2 4555566777777777777777777665 345555554433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.9e-06 Score=81.20 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=94.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHH-HHHHHHh
Q 004024 476 NTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYT-CMVDLLG 554 (778)
Q Consensus 476 ~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~-~lv~~l~ 554 (778)
.+|.+.+.-.-++++.+-.++....- +.-|.+.-..+..|.+..|...+|.++|-.+... .++ |..+|. .|...|.
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHH
Confidence 34455555555566666666655543 2233333334566777777777777777665421 222 334444 3456788
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHH
Q 004024 555 RAGRLDEAQNLMKNMPFEPDAATWG-ALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 555 r~g~~~eA~~~~~~m~~~p~~~~~~-~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
+.|+++-|.+++-++.-..+..+.- .+..-|.+.+.+--|-++|..+..++|.. ..+ .|+...-..++.
T Consensus 440 ~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p-EnW---------eGKRGACaG~f~ 509 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP-ENW---------EGKRGACAGLFR 509 (557)
T ss_pred hcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc-ccc---------CCccchHHHHHH
Confidence 8899999999888886344444443 44478999999988999999888888753 211 233334445555
Q ss_pred HHHhCCCccCCc
Q 004024 634 KMRDRGVKKVTG 645 (778)
Q Consensus 634 ~m~~~g~~k~~g 645 (778)
.+.....++.|+
T Consensus 510 ~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 510 QLANHKTDPIPI 521 (557)
T ss_pred HHHcCCCCCCch
Confidence 555444444444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-05 Score=87.63 Aligned_cols=405 Identities=12% Similarity=0.077 Sum_probs=246.7
Q ss_pred CccHhhHHHHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC----CCeehHHHHHHH
Q 004024 215 EVVSWNSLMGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV----KDVFTWTAMVSG 287 (778)
Q Consensus 215 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~d~~~~~~li~~ 287 (778)
+...|..|.-+...+|+++.+.+.|++.. -.....|+.+...|..+|.-..|..+++.-.. |+..+--.|+..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 45567777778888888888888888776 23456788888888888888888888876542 333333333332
Q ss_pred -HH-hcCChHHHHHHHHhCCCC--------CcchHHHHHHHHhcc----C-------ChHHHHHHHHhhc---cccccHH
Q 004024 288 -YV-QNGKVDEARMIFDAMPEK--------NTVSWNAMIAGYVQT----K-------RMDMARELFEAMT---CKNVASW 343 (778)
Q Consensus 288 -~~-~~g~~~~A~~l~~~m~~~--------~~~t~~~ll~~~~~~----~-------~~~~a~~i~~~~~---~~~~~~~ 343 (778)
|. +.|..++++++-.+.... ....+..+.-+|... . ...++.+.++..+ +.|+.+.
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 33 236667776666555431 344444444444322 1 1235556666665 4555555
Q ss_pred HHHHHHHHhcCChhHHHHHhhhCC----CCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccC-cccccchHHHhcc
Q 004024 344 NTMITGYAQSGEITHARNLFDRMP----QHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLN-RSPFTSVLSTCAN 418 (778)
Q Consensus 344 ~~Li~~y~k~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~ 418 (778)
.-|.--|+..++++.|.+...+.. ..+...|.-+.-.+...+++.+|+.+.+....+- |+ ..-...-+..-..
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhhhhhhh
Confidence 556667888888888887776643 3466788888888888889999988887765531 11 1111111111111
Q ss_pred cccHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CChh-HHHHHHHHHHHcCChHHH
Q 004024 419 LASLELGKQLHGQLVKVGF-EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KDVI-SWNTMIAGYARHGFGKDA 491 (778)
Q Consensus 419 ~~~~~~a~~i~~~~~~~g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d~~-~~~~li~~~~~~g~~~~A 491 (778)
.++.+++......+...-- .+. ....|+-....+.+..+.- .|.+ ++..+ .+..+ -+.+.+
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~ 627 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSA 627 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhh----------HhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhc
Confidence 3333333332222211000 000 0011112223333333311 1222 22222 22222 111111
Q ss_pred HHHHHHHHHCCCCCChh--------HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHH
Q 004024 492 LMLFESMKTVGIKPDDI--------TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEA 562 (778)
Q Consensus 492 l~l~~~m~~~g~~pd~~--------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA 562 (778)
..-.. |...-+.|... .+......+...+..++++..+.+..+ +.| ....|......+...|.++||
T Consensus 628 ~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 628 GSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred ccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHH
Confidence 10000 22222333221 244555677888999999888877753 344 455666677888899999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHH--HHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 563 QNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEK--AAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 563 ~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~--~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.+.|... .+.|+ +.+..+|...+...|+...|+. +...+++++|.++..+..|+.++-+.|+.++|.+.|...-+
T Consensus 704 ~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 704 KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 9988766 67887 5588889899999999999988 99999999999999999999999999999999999987765
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00016 Score=74.13 Aligned_cols=401 Identities=13% Similarity=0.068 Sum_probs=214.3
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehH-HHHHHHHHhcC-ChHHHHHHHHhCCCCCcchHHHHHHHHhcc-
Q 004024 246 DEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTW-TAMVSGYVQNG-KVDEARMIFDAMPEKNTVSWNAMIAGYVQT- 322 (778)
Q Consensus 246 d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~-~~li~~~~~~g-~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~- 322 (778)
|...-.-++..|-..++-+.|.....+.+..-...- |.|+.-+-+.| +-.++.--+......-+.....+. +..+.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~-~ll~l~ 174 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIE-ALLELG 174 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHH-HHHHHh
Confidence 445556788889899999999999988886544334 44444444333 222222222222222222211111 11111
Q ss_pred -CChHHHHHHHHhhc-cccccHHHHHHHHHHhc--CChhHHHHHhhhCC-----CCCeeehhhHHHHHHhcCChhHHHHH
Q 004024 323 -KRMDMARELFEAMT-CKNVASWNTMITGYAQS--GEITHARNLFDRMP-----QHDCISWAAIIAGYAQSGYSEDSLRL 393 (778)
Q Consensus 323 -~~~~~a~~i~~~~~-~~~~~~~~~Li~~y~k~--g~~~~A~~~f~~m~-----~~d~~~~~~li~~~~~~g~~~~Al~l 393 (778)
...+.+--....+. +++......-+.+|+.+ ++-..|...|-.+. ..|+....++...+...|+.++|...
T Consensus 175 v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~ 254 (564)
T KOG1174|consen 175 VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDI 254 (564)
T ss_pred hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHH
Confidence 11111111111111 33333444445555554 33334444433322 23556677888888889999999999
Q ss_pred HHHHhhcCcccCcccccchH-HHhcccccHHHHHHHHHHHHHcC-CCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 004024 394 FIEMKRYGERLNRSPFTSVL-STCANLASLELGKQLHGQLVKVG-FEAG-CFVGNALLVMYCKCGSVEEAYHAFEEIVDK 470 (778)
Q Consensus 394 ~~~m~~~g~~pd~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~g-~~~~-~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~ 470 (778)
|.+.+. +.|+.++-.-+- -.....|+.+....+..++.... .... .++..+ ..-...+++.|..+-++..+-
T Consensus 255 Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~---~l~~~K~~~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 255 FSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ---LLYDEKKFERALNFVEKCIDS 329 (564)
T ss_pred HHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh---hhhhhhhHHHHHHHHHHHhcc
Confidence 988765 334433211110 11234455555555544443221 1111 111111 112234566666666655543
Q ss_pred Chh---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHH
Q 004024 471 DVI---SWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHY 546 (778)
Q Consensus 471 d~~---~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 546 (778)
|.. .+-.=...+.+.|+.++|.-.|+..+. +.| +-..|.+++..|...|.+.||.-.-+...+. +.-+..+.
T Consensus 330 ~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~L 405 (564)
T KOG1174|consen 330 EPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSL 405 (564)
T ss_pred CcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhh
Confidence 332 232223455666777777777777666 555 3456777777777777777776555444332 11233333
Q ss_pred HHHH-HHHhh-cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc
Q 004024 547 TCMV-DLLGR-AGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 547 ~~lv-~~l~r-~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~ 622 (778)
+.+. +.+.- .---++|.+++++. .++|+ ....+.+..-|...|..+.+..++++.+...|++ ..++.|+.++...
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQ 484 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHh
Confidence 3331 22221 12245677777655 56666 3355556666777777777777777777777765 6677777777777
Q ss_pred CCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 004024 623 GRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLK 683 (778)
Q Consensus 623 g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~ 683 (778)
..+.+|.+.+..... ..|+.+.-.+-|+.|+++++
T Consensus 485 Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALR--------------------------QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred hhHHHHHHHHHHHHh--------------------------cCccchHHHHHHHHHHhccC
Confidence 777777777665443 46777777888888888776
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.9e-05 Score=77.36 Aligned_cols=204 Identities=13% Similarity=0.149 Sum_probs=114.4
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCcchHHHHH---HHHhccCChHHHHHHHHhhc--cccccHH-HHHHHHHHhcCChhH
Q 004024 285 VSGYVQNGKVDEARMIFDAMPEKNTVSWNAMI---AGYVQTKRMDMARELFEAMT--CKNVASW-NTMITGYAQSGEITH 358 (778)
Q Consensus 285 i~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll---~~~~~~~~~~~a~~i~~~~~--~~~~~~~-~~Li~~y~k~g~~~~ 358 (778)
...+...|++.+|+.-|....+-|+..|.++. ..|...|+-..|..-+..++ .||-... -.-...+.|.|.++.
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHH
Confidence 33444445555555555555444443333332 24444555555555555554 2221110 111234567777777
Q ss_pred HHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCC
Q 004024 359 ARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFE 438 (778)
Q Consensus 359 A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 438 (778)
|..=|+.+.+.++. -+....++.+.-..++-..+. ..+......|+...+......+++.. +
T Consensus 125 A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~l~----------------~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 125 AEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWVLV----------------QQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred HHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHHHH----------------HHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 77777776553321 011111111111111111111 12222334456666666666665543 6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhc---cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEI---VDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI 508 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m---~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~ 508 (778)
.|...+..-.+.|.+.|++..|+.-++.. ...+....--+-..+-.-|+.+.++...++-.+ +.||.-
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 78888888889999999999998766654 445666777777788889999999999998888 788864
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.7e-05 Score=75.11 Aligned_cols=122 Identities=14% Similarity=0.140 Sum_probs=78.0
Q ss_pred cccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHH-HHHHHcCChHHHHHH
Q 004024 419 LASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMI-AGYARHGFGKDALML 494 (778)
Q Consensus 419 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li-~~~~~~g~~~~Al~l 494 (778)
.-+++...-....+...-...|.+.+| +..+++..|...+|+++|-.+.. +|-.+|-+|+ .+|.++++++-|.++
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 344555555555544444445555554 67778888888888888877755 4566676654 567788888888777
Q ss_pred HHHHHHCCCCCChhHHHHHH-HHHhccCcHHHHHHHHHHchhhcCCCCChHHHH
Q 004024 495 FESMKTVGIKPDDITMVGIL-SACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYT 547 (778)
Q Consensus 495 ~~~m~~~g~~pd~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 547 (778)
+-++. ...+..+...++ .-|.+.+.+--|-+.|+.+. ...|+++.|.
T Consensus 451 ~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnWe 498 (557)
T KOG3785|consen 451 MLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENWE 498 (557)
T ss_pred HHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCccccC
Confidence 65543 222444444443 46888888888888887775 4567766653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00012 Score=80.67 Aligned_cols=394 Identities=16% Similarity=0.174 Sum_probs=206.0
Q ss_pred CCCcchHHHHHH--HHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcc------------cCCc
Q 004024 120 QRDLVSWNVMIS--GYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRML------------EKNE 185 (778)
Q Consensus 120 ~~~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~------------~~d~ 185 (778)
.-|..+-.++++ .|..-|+.+.|.+-..-+. .-.+|..|.++|.+..+++-|.-.+..|. +.+.
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 345666666664 3566677777766555443 34567777777777777777766666664 1111
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCC-ChhHHHHHHHHHhcCCCHH
Q 004024 186 ISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVR-DEVSWNTMITGYAQNNYLA 264 (778)
Q Consensus 186 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-d~~~~~~li~~y~~~g~~~ 264 (778)
.+-.-+.-.....|.+++|+.++++-.+.| .|=..|-..|.+++|.++-+.-..- =..||..-..-+-..++.+
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHH
Confidence 222222333456777888888887766543 3445666777888777775532110 1124444444455566777
Q ss_pred HHHHHHhhCCCC-----------------------CeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhc
Q 004024 265 EAQRLFEEAPVK-----------------------DVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQ 321 (778)
Q Consensus 265 ~A~~~f~~m~~~-----------------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~ 321 (778)
.|.+.|++...+ |...|.-....+-..|+.+.|+.+|.... -|.++++..|-
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~ 950 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCI 950 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEee
Confidence 777777654322 22233333333344455666665555432 24455555555
Q ss_pred cCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcC
Q 004024 322 TKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYG 401 (778)
Q Consensus 322 ~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g 401 (778)
.|+.++|-++-++- .|......|..+|-..|++.+|...|-+.. ++..-|..+-.++ .++-+.-+.-|-
T Consensus 951 qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afsnAIRlcKEnd-~~d~L~nlal~s--- 1019 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ-----AFSNAIRLCKEND-MKDRLANLALMS--- 1019 (1416)
T ss_pred ccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHhcC-HHHHHHHHHhhc---
Confidence 66666665554442 344445556666666666666666665442 1222222222211 111111111110
Q ss_pred cccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC------------
Q 004024 402 ERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD------------ 469 (778)
Q Consensus 402 ~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~------------ 469 (778)
...++-.+-.++ .+.|... .--+..|-|.|.+.+|+++-=+-.+
T Consensus 1020 ----------------~~~d~v~aArYy---Ee~g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd 1075 (1416)
T KOG3617|consen 1020 ----------------GGSDLVSAARYY---EELGGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD 1075 (1416)
T ss_pred ----------------CchhHHHHHHHH---HHcchhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC
Confidence 111111222222 2222111 1234467888888888765322211
Q ss_pred --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC----h
Q 004024 470 --KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN----S 543 (778)
Q Consensus 470 --~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 543 (778)
.|+...+--..-+..+.++++|..++-...+ |...+..|...|. .-..++-+.|.....-.|+ .
T Consensus 1076 ~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv-~vtee~aE~mTp~Kd~~~~e~~R~ 1145 (1416)
T KOG3617|consen 1076 AGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNV-RVTEEFAELMTPTKDDMPNEQERK 1145 (1416)
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCC-chhHHHHHhcCcCcCCCccHHHHH
Confidence 3555555556667778888888888766554 4455555554432 2223333344322222333 2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 004024 544 KHYTCMVDLLGRAGRLDEAQNLMKNMP 570 (778)
Q Consensus 544 ~~y~~lv~~l~r~g~~~eA~~~~~~m~ 570 (778)
.....+.+.+.+.|.+..|-+-|.+.+
T Consensus 1146 ~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1146 QVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 345566677888888888877776664
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-05 Score=85.78 Aligned_cols=415 Identities=13% Similarity=0.082 Sum_probs=254.0
Q ss_pred cCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCC---ccHhhHHHHHHHhcCChhHHHHHHhhCCC----C-ChhHHHHH
Q 004024 182 EKNEISWNGLLAAYVQNGRIEEACMLFESKANWE---VVSWNSLMGGFVKQKRLGDAKWIFDRMPV----R-DEVSWNTM 253 (778)
Q Consensus 182 ~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-d~~~~~~l 253 (778)
+.|...|-.+.-+....|+++.+-+.|++....- ...|+.+...|..+|.-..|..+++.-.. | |+..+-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 3467778888888899999999999999887653 35799999999999999999999987652 2 22222222
Q ss_pred HHHHh-cCCCHHHHHHHHhhCCC--------CCeehHHHHHHHHHhc-----------CChHHHHHHHHhCCCC---Ccc
Q 004024 254 ITGYA-QNNYLAEAQRLFEEAPV--------KDVFTWTAMVSGYVQN-----------GKVDEARMIFDAMPEK---NTV 310 (778)
Q Consensus 254 i~~y~-~~g~~~~A~~~f~~m~~--------~d~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~---~~~ 310 (778)
-..|. +.+.++++...-.+... .....+-.+.-+|... ....++++.+++..+. |..
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 22232 33455554443333221 1334455555454332 1235667777777542 555
Q ss_pred hHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHHHHHHHHhcCChhHHHHHhhhCCCC---CeeehhhHHHHHHh
Q 004024 311 SWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNTMITGYAQSGEITHARNLFDRMPQH---DCISWAAIIAGYAQ 383 (778)
Q Consensus 311 t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~ 383 (778)
...-+.--|+..++++.|.+...+.. ..+...|.-|.-.+.-.+++.+|+.+.+...+. |.+.-..-|..-..
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 54455556778889999999988877 567788999999999999999999998865432 21111112222233
Q ss_pred cCChhHHHHHHHHHhhc--CcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHH---HHHHHHHHhcCCHH
Q 004024 384 SGYSEDSLRLFIEMKRY--GERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVG---NALLVMYCKCGSVE 458 (778)
Q Consensus 384 ~g~~~~Al~l~~~m~~~--g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~---~~Li~~y~k~g~~~ 458 (778)
-++.++|+.....|..- ...|=..|. . .|....-+.-...... .....+.++ .+++..=.+.-..+
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~----~----~g~~~~lk~~l~la~~-q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTL----D----EGKLLRLKAGLHLALS-QPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhh----h----hhhhhhhhcccccCcc-cccccchhhHHHHHHHHhhhhhcccc
Confidence 67888888887777541 000000000 0 0000000000000000 000011111 12222111111111
Q ss_pred HHHHHHHhccCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHH
Q 004024 459 EAYHAFEEIVDKD------VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFY 531 (778)
Q Consensus 459 ~A~~~f~~m~~~d------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~ 531 (778)
.....+...+.|+ ...|......+...++.++|...+.+... +.|-. ..|......+...|..++|.+.|.
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 2222222222333 23466666777888888888877777665 44533 234444455667788899998887
Q ss_pred HchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 004024 532 SMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQN--LMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEP 606 (778)
Q Consensus 532 ~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~--~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p 606 (778)
... -+.|+ +..-.++..+|.+.|+..-|.. ++..+ .+.|+ ...|-.|.....+.|+.+.|...|.-+.++++
T Consensus 709 ~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 709 VAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 765 56674 6677888899999998766666 77766 56775 77999999999999999999999999999998
Q ss_pred CCCc
Q 004024 607 ENAG 610 (778)
Q Consensus 607 ~~~~ 610 (778)
.+|.
T Consensus 786 S~PV 789 (799)
T KOG4162|consen 786 SNPV 789 (799)
T ss_pred CCCc
Confidence 8764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.1e-05 Score=81.14 Aligned_cols=209 Identities=14% Similarity=0.113 Sum_probs=131.5
Q ss_pred HHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChh----------HHHHHHHHHH
Q 004024 414 STCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVI----------SWNTMIAGYA 483 (778)
Q Consensus 414 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~----------~~~~li~~~~ 483 (778)
++.-+..+++.+.+-+...+... .++.-++.....|...|...+....-+...+..-. +..-+..+|.
T Consensus 232 naaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 232 NAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Confidence 33444445555666555555544 45555566666677777766665555444332211 1122334566
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCCh--HHHHHHHHHHhhcCCHHH
Q 004024 484 RHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNS--KHYTCMVDLLGRAGRLDE 561 (778)
Q Consensus 484 ~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lv~~l~r~g~~~e 561 (778)
..++++.|+..|.+....-..||..+ +....+++....+... -+.|.. +--.+ ..-+-+.|++.+
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~k-Gne~Fk~gdy~~ 376 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREK-GNEAFKKGDYPE 376 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHH-HHHHHhccCHHH
Confidence 67788888888888766555555332 2223344443333321 223322 11112 455667888888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 562 AQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 562 A~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
|...+.++ ...| |+..|.....++.+.|++..|..-++..++++|+....|..=+-++....+|++|.+.+..-.+
T Consensus 377 Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888776 3455 4667888888888888888888888888888888888888888888888888888888876655
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-05 Score=83.27 Aligned_cols=295 Identities=11% Similarity=-0.043 Sum_probs=169.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhhCCC---CCeee---hhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcc-cccc---
Q 004024 342 SWNTMITGYAQSGEITHARNLFDRMPQ---HDCIS---WAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRS-PFTS--- 411 (778)
Q Consensus 342 ~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~---~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~--- 411 (778)
.+..+...|...|+.+.+.+.+....+ ++... .......+...|++++|.+++++.... .|+.. .+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHH
Confidence 344455555556666665555544322 12111 112233456678888888888877664 24333 2211
Q ss_pred hHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCCh
Q 004024 412 VLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFG 488 (778)
Q Consensus 412 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~ 488 (778)
........+....+.+.... .....+........+...+...|++++|.+.+++..+ .+...+..+...|...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 11111123344444444333 1111122334445566778889999999999998755 3456778888889999999
Q ss_pred HHHHHHHHHHHHCCC-CCCh--hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHH-H--HHHHHHhhcCC----
Q 004024 489 KDALMLFESMKTVGI-KPDD--ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHY-T--CMVDLLGRAGR---- 558 (778)
Q Consensus 489 ~~Al~l~~~m~~~g~-~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-~--~lv~~l~r~g~---- 558 (778)
++|+.++++.....- .|+. ..+..+...+...|+.++|..+++.........+..... + .+...+...|.
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 999999998876321 1222 134456677888999999999998875321211222111 1 22333333442
Q ss_pred --HHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-C--------CCCchHHHHHHHhhhcCCcc
Q 004024 559 --LDEAQNLMKNM-PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEME-P--------ENAGMYVLLSNLYAASGRWG 626 (778)
Q Consensus 559 --~~eA~~~~~~m-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~-p--------~~~~~y~~L~~~y~~~g~~~ 626 (778)
++++....... +.............++...|+.+.|...++.+.... + .......+.+.++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 22222222111 111112223355666778889999999998876532 1 13456678888999999999
Q ss_pred hHHHHHHHHHhCC
Q 004024 627 DVSKVRLKMRDRG 639 (778)
Q Consensus 627 ~a~~~~~~m~~~g 639 (778)
+|.+.+......+
T Consensus 325 ~A~~~L~~al~~a 337 (355)
T cd05804 325 TALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887766543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-06 Score=84.46 Aligned_cols=218 Identities=15% Similarity=0.105 Sum_probs=138.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC--CCcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCCh
Q 004024 282 TAMVSGYVQNGKVDEARMIFDAMPE--KNTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEI 356 (778)
Q Consensus 282 ~~li~~~~~~g~~~~A~~l~~~m~~--~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~ 356 (778)
+.|...|.+.|.+.+|.+.|+.-++ +-+.||..+-++|.+..+.+.|..++.+.. +.|+.....+...+-..++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 5677788888888888888877654 367788888888888888888888888777 55555556667777778888
Q ss_pred hHHHHHhhhCCC---CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHH
Q 004024 357 THARNLFDRMPQ---HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLV 433 (778)
Q Consensus 357 ~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 433 (778)
++|.++++...+ .++.+..++..+|.-.++++-|+..|+++.+.|+. +..-|..+--.|.-.++++.+.--+.+..
T Consensus 307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 888888887654 35566667777888888888888888888887753 23334444444555555555555555544
Q ss_pred HcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 434 KVGFEAG--CFVGNALLVMYCKCGSVEEAYHAFEEIVDK---DVISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 434 ~~g~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
..--.|+ ..+|-.|.......|++..|.+.|+-.... +..++|.|.-.-.+.|+.++|..+++....
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 3322221 223333444444455555555555544332 233455555545555555555555555444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.7e-06 Score=84.72 Aligned_cols=156 Identities=14% Similarity=0.089 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc---
Q 004024 443 VGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSH--- 519 (778)
Q Consensus 443 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~--- 519 (778)
+......+|...|++++|.+++.+. .+.......+..|.+.++.+.|.+.++.|.+ +..|. +...+..++..
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLAT 178 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHh
Confidence 3333445677788888888877765 4555556667788888888888888888876 34443 33333333221
Q ss_pred -cCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004024 520 -TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAA 598 (778)
Q Consensus 520 -~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 598 (778)
...+.+|..+|+++... ..+++.+.+.+..+....|++++|+..+
T Consensus 179 g~e~~~~A~y~f~El~~~----------------------------------~~~t~~~lng~A~~~l~~~~~~eAe~~L 224 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDK----------------------------------FGSTPKLLNGLAVCHLQLGHYEEAEELL 224 (290)
T ss_dssp TTTCCCHHHHHHHHHHCC----------------------------------S--SHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhc----------------------------------cCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 12344444444444332 2344555555555555666666666666
Q ss_pred HHHHhcCCCCCchHHHHHHHhhhcCCc-chHHHHHHHHHh
Q 004024 599 EVIFEMEPENAGMYVLLSNLYAASGRW-GDVSKVRLKMRD 637 (778)
Q Consensus 599 ~~~~~l~p~~~~~y~~L~~~y~~~g~~-~~a~~~~~~m~~ 637 (778)
+.+++.+|+++.+...++-+....|+. +.+.+.+..+++
T Consensus 225 ~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 225 EEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666666666666666666666666 334455555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00033 Score=75.96 Aligned_cols=129 Identities=18% Similarity=0.187 Sum_probs=89.3
Q ss_pred CChhHHHH--HHHHHHHcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHH
Q 004024 470 KDVISWNT--MIAGYARHGFGKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHY 546 (778)
Q Consensus 470 ~d~~~~~~--li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 546 (778)
|....|+. ++..|-..|+++.|+.+.+..+. -.|+.+ -|..-...+.|.|++++|..++++..+- -.||...=
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~IN 442 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAIN 442 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHH
Confidence 55566765 56677888999999999999887 678765 4555667899999999999999988642 23455444
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCC-C--------HHHHHHHH--HHHHHcCChHHHHHHHHHHH
Q 004024 547 TCMVDLLGRAGRLDEAQNLMKNMPFEP-D--------AATWGALL--GACRLYGKTELAEKAAEVIF 602 (778)
Q Consensus 547 ~~lv~~l~r~g~~~eA~~~~~~m~~~p-~--------~~~~~~Ll--~a~~~~g~~~~a~~~~~~~~ 602 (778)
+--+.-..|+.+.++|.++.....-+- + ...|--+= .++.+.|++.+|.+-+..+.
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 455666779999999999876552111 1 22454443 56677777766665554433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.9e-05 Score=82.52 Aligned_cols=172 Identities=17% Similarity=0.157 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc------------------CCChhHH--HHHHHHHH
Q 004024 424 LGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV------------------DKDVISW--NTMIAGYA 483 (778)
Q Consensus 424 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~------------------~~d~~~~--~~li~~~~ 483 (778)
.+..+.....+.|+| .+++.|-..|....+.+-..+++.... .|....| .-+...|-
T Consensus 129 ~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 344444555556643 244555556665444444444444431 1333345 44566788
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHH
Q 004024 484 RHGFGKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDE 561 (778)
Q Consensus 484 ~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~e 561 (778)
..|+.++|+++.++.++ ..|+.+ .|..-...+-|.|++++|.+.++.... +.+ |-..=+-.+..+.|+|+.++
T Consensus 206 ~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARE---LDLADRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred HhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---CChhhHHHHHHHHHHHHHCCCHHH
Confidence 89999999999999998 678855 677778899999999999999998763 344 44555567788899999999
Q ss_pred HHHHHHhCC---CCCC------HHHH--HHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 562 AQNLMKNMP---FEPD------AATW--GALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 562 A~~~~~~m~---~~p~------~~~~--~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
|.+.+.... ..|- ..+| .....+|.+.|++..|.+-+..+.+
T Consensus 281 A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 281 AEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999887662 1221 2255 3446788999999999988887765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.3e-05 Score=73.34 Aligned_cols=197 Identities=14% Similarity=0.097 Sum_probs=141.2
Q ss_pred hHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 004024 376 AIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCG 455 (778)
Q Consensus 376 ~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g 455 (778)
.+.-+|.+.|+...|..-+++.++.. +.+..++..+...|.+.|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D------------------------------------Ps~~~a~~~~A~~Yq~~G 83 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD------------------------------------PSYYLAHLVRAHYYQKLG 83 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------cccHHHHHHHHHHHHHcC
Confidence 34456666666666666666665532 445566777888888888
Q ss_pred CHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHH
Q 004024 456 SVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFY 531 (778)
Q Consensus 456 ~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~ 531 (778)
..+.|.+-|++... .+-...|....-+|..|++++|...|++....-.-|. ..||..+.-+..+.|+.+.|.++|.
T Consensus 84 e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 84 ENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred ChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 88888888887644 4556677777778888888888888888876432222 3477777777778888888888888
Q ss_pred HchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 532 SMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM--PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 532 ~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
...+ +.| .......|.+.....|++-+|..+++.. ...++..+.--.+..-+..||.+.+-+.-.++..+-|..
T Consensus 164 raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 164 RALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 7764 233 3455667888888889999998888776 234666665556666677888888888888888888877
Q ss_pred Cch
Q 004024 609 AGM 611 (778)
Q Consensus 609 ~~~ 611 (778)
...
T Consensus 241 ~e~ 243 (250)
T COG3063 241 EEY 243 (250)
T ss_pred HHH
Confidence 543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00013 Score=82.41 Aligned_cols=292 Identities=12% Similarity=0.014 Sum_probs=139.2
Q ss_pred ccccHHHHHHHHHHhcCChhHHHHHhhhCC---CCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCccc-CcccccchH
Q 004024 338 KNVASWNTMITGYAQSGEITHARNLFDRMP---QHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERL-NRSPFTSVL 413 (778)
Q Consensus 338 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll 413 (778)
.+...||+|.-. ..-|.+.-|...|-+-. .....+|..+-..+.++.+.+-|...|...+.- .| |...+....
T Consensus 815 nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~A 891 (1238)
T KOG1127|consen 815 NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEA 891 (1238)
T ss_pred ccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHH
Confidence 344555555444 44455555555554332 234456666666666666666666666655542 22 222222222
Q ss_pred HHhcccccHHHHHHHHHH--H--HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC------------C-ChhHHH
Q 004024 414 STCANLASLELGKQLHGQ--L--VKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD------------K-DVISWN 476 (778)
Q Consensus 414 ~a~~~~~~~~~a~~i~~~--~--~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~------------~-d~~~~~ 476 (778)
..-...|+.-....++.. . .+.|-.++...+-+-.......|+.++-...-+++.. | +...|.
T Consensus 892 li~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~ 971 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYA 971 (1238)
T ss_pred HhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHH
Confidence 222233433334444333 1 1122223332222222223344554444333333321 1 344566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhh
Q 004024 477 TMIAGYARHGFGKDALMLFESMKTV-GIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGR 555 (778)
Q Consensus 477 ~li~~~~~~g~~~~Al~l~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r 555 (778)
+.....-+.+.+++|.++..+.+.- ..+-|..+|+.+. ...|++.-+..-|+......+..|-..-=..+.-.++-
T Consensus 972 ~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak---~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l 1048 (1238)
T KOG1127|consen 972 ANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK---PDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL 1048 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH
Confidence 6666666667777777777665421 0233444444321 22233333333333333333443322211122222222
Q ss_pred --cCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 556 --AGRLDEAQNLMKNM----PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 556 --~g~~~eA~~~~~~m----~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
.|+++++.+.|++. .-+.| ++....++..-...+..+.|....=+..++.|.+.+....|.-+|.-..+-..-
T Consensus 1049 Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~s 1128 (1238)
T KOG1127|consen 1049 FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGS 1128 (1238)
T ss_pred HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhh
Confidence 57778888888776 12334 334455555556667777777777777777777777777776666555444443
Q ss_pred HHHHHHH
Q 004024 629 SKVRLKM 635 (778)
Q Consensus 629 ~~~~~~m 635 (778)
.-+.+.+
T Consensus 1129 saileel 1135 (1238)
T KOG1127|consen 1129 SAILEEL 1135 (1238)
T ss_pred HHHHHHH
Confidence 3333333
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.003 Score=71.65 Aligned_cols=191 Identities=14% Similarity=0.183 Sum_probs=119.9
Q ss_pred CChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHH
Q 004024 354 GEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLV 433 (778)
Q Consensus 354 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 433 (778)
+.++.|.+.-++..+| ..|+.+..+-.+.|...+|++-|-+. -|...|.-++.++++.|.++.-..++..+.
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3444444444444333 47999999999999999999887543 356678999999999999999999888888
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh--------------------------hHHHHHHHHHHHcCC
Q 004024 434 KVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDV--------------------------ISWNTMIAGYARHGF 487 (778)
Q Consensus 434 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~--------------------------~~~~~li~~~~~~g~ 487 (778)
+..-+|. +-+.||-+|+|.+++.+-++... -||+ .-|..|...+...|+
T Consensus 1161 kk~~E~~--id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1161 KKVREPY--IDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGE 1235 (1666)
T ss_pred HhhcCcc--chHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7765555 45679999999999888766543 2333 334444445555555
Q ss_pred hHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 004024 488 GKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMK 567 (778)
Q Consensus 488 ~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~ 567 (778)
+..|.+.-++. .+.-||--+-.||...+.+.-|. |.. ..+.-..+-..-++..|...|.++|-..+++
T Consensus 1236 yQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1236 YQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 55555444332 12335555555665554443331 111 1222234445556666666677766666665
Q ss_pred hC
Q 004024 568 NM 569 (778)
Q Consensus 568 ~m 569 (778)
..
T Consensus 1304 a~ 1305 (1666)
T KOG0985|consen 1304 AG 1305 (1666)
T ss_pred hh
Confidence 54
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.3e-06 Score=89.97 Aligned_cols=196 Identities=14% Similarity=0.164 Sum_probs=149.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh------
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI------ 508 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~------ 508 (778)
+.+...|--|...-...++-..|+..+.+..+ .|....-+|.-.|...|.-.+|++.++.-+.. +|-.+
T Consensus 316 P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~--~p~y~~l~~a~ 393 (579)
T KOG1125|consen 316 PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRN--KPKYVHLVSAG 393 (579)
T ss_pred hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CccchhccccC
Confidence 33455555555556666666677777777655 35666777778888889889999998887652 22111
Q ss_pred ---HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 004024 509 ---TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLG 583 (778)
Q Consensus 509 ---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~ 583 (778)
.+..- ....+........++|-.+....+..+|++.+.+|.-+|--.|.+++|.+-|+.. ..+|+ ..+||-|..
T Consensus 394 ~~~~~~~~-~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 394 ENEDFENT-KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred ccccccCC-cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence 00000 1223334455667778887777677788889999999999999999999999987 67785 779999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 584 ACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 584 a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
.+......++|+.+|.++++|.|.-..+-..|+-.|...|.++||.+.+-...
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99998999999999999999999999999999999999999999999865543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-07 Score=60.95 Aligned_cols=34 Identities=38% Similarity=0.673 Sum_probs=28.6
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 004024 435 VGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV 468 (778)
Q Consensus 435 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 468 (778)
.|+.||..+||+||++|+|.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888874
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0002 Score=77.22 Aligned_cols=165 Identities=14% Similarity=0.056 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CCh--hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHH-H
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KDV--ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITM-V 511 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d~--~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~-~ 511 (778)
...+..+...|...|++++|...+++... ++. ..|..+...+...|+.++|+.++++.......++ .... .
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~ 227 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLD 227 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhh
Confidence 34445556666666666666666665533 111 2344556666667777777777776643211011 1111 1
Q ss_pred --HHHHHHhccCcHHHHHHH--HHHchhhcCC-CCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCC---C------H
Q 004024 512 --GILSACSHTGLVEKGTEY--FYSMNRDYGV-IPNSKHYTCMVDLLGRAGRLDEAQNLMKNMP--FEP---D------A 575 (778)
Q Consensus 512 --~ll~a~~~~g~~~~a~~~--~~~m~~~~~~-~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p---~------~ 575 (778)
.++.-....|..+.+.+. .........- ......-...+.++...|+.++|..+++.+. .+. . .
T Consensus 228 ~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 307 (355)
T cd05804 228 AASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDV 307 (355)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhh
Confidence 222223333332222222 1111110000 0011111235556677788888888776651 111 1 1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
.+.-...-++...||.+.|.+.+..++++-
T Consensus 308 ~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 308 GLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 111122234557788888888888777653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00058 Score=74.11 Aligned_cols=168 Identities=11% Similarity=0.106 Sum_probs=93.6
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHHhhCC--C-CCeehHHHHHHHHHhcCChHHHHHHHHhCCCC---CcchHHHHHHH
Q 004024 245 RDEVSWNTMITGYAQNNYLAEAQRLFEEAP--V-KDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK---NTVSWNAMIAG 318 (778)
Q Consensus 245 ~d~~~~~~li~~y~~~g~~~~A~~~f~~m~--~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~t~~~ll~~ 318 (778)
.+.+.|..+.-.+-...++++|.+.|.... + .|...|.-+.-.-++.|+++.....-....+. ....|....-+
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs 152 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVA 152 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 345667766666666677777777776543 2 24455655555555666666555554444432 44556666666
Q ss_pred HhccCChHHHHHHHHhhc-----cccccHHHHH------HHHHHhcCChhHHHHHhhhCCCC--C-eeehhhHHHHHHhc
Q 004024 319 YVQTKRMDMARELFEAMT-----CKNVASWNTM------ITGYAQSGEITHARNLFDRMPQH--D-CISWAAIIAGYAQS 384 (778)
Q Consensus 319 ~~~~~~~~~a~~i~~~~~-----~~~~~~~~~L------i~~y~k~g~~~~A~~~f~~m~~~--d-~~~~~~li~~~~~~ 384 (778)
.--.|+...|..+.++.. .++...+.-. .....+.|..++|.+.+...... | ...--+...-+.+.
T Consensus 153 ~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl 232 (700)
T KOG1156|consen 153 QHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKL 232 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHH
Confidence 666677777776666655 1233222221 12345566667766666544321 1 11223344556677
Q ss_pred CChhHHHHHHHHHhhcCcccCcccccchHH
Q 004024 385 GYSEDSLRLFIEMKRYGERLNRSPFTSVLS 414 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~ 414 (778)
++.++|..+++.++.. .||.+-|.-.+.
T Consensus 233 ~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 233 GQLEEAVKVYRRLLER--NPDNLDYYEGLE 260 (700)
T ss_pred hhHHhHHHHHHHHHhh--CchhHHHHHHHH
Confidence 7777777777777664 366555544433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.9e-05 Score=79.69 Aligned_cols=179 Identities=15% Similarity=0.020 Sum_probs=114.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----H
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KD-V---ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI----T 509 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d-~---~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~----t 509 (778)
....+-.+...|.+.|++++|...|+++.. |+ . .+|..+...|...|++++|+..++++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 445556666777778888888888877654 22 1 3566677777778888888888888776 445432 2
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHchhhcCCCCChHH-HHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 004024 510 MVGILSACSHT--------GLVEKGTEYFYSMNRDYGVIPNSKH-YTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGA 580 (778)
Q Consensus 510 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~~-y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ 580 (778)
+..+..++... |+.++|.+.|+.+... .|+... +..+. +.+...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~----~~~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKK----RMDYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHH----HHHHHHHHH-----------HHHHHH
Confidence 33333344433 5667777777766643 233211 11111 111111100 001124
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 581 LLGACRLYGKTELAEKAAEVIFEMEPENA---GMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 581 Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
+...+...|+.+.|...++++++..|+++ ..+..++.+|...|++++|.++++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45567788999999999999999877654 68899999999999999999998887764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.9e-07 Score=59.63 Aligned_cols=33 Identities=36% Similarity=0.613 Sum_probs=23.5
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 004024 538 GVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMP 570 (778)
Q Consensus 538 ~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~ 570 (778)
|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 666777777777777777777777777777663
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00021 Score=87.51 Aligned_cols=352 Identities=14% Similarity=0.044 Sum_probs=210.7
Q ss_pred HHHhcCChHHHHHHHHhCCCCCcc--hHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHHHHHHHHhcCChhHHH
Q 004024 287 GYVQNGKVDEARMIFDAMPEKNTV--SWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNTMITGYAQSGEITHAR 360 (778)
Q Consensus 287 ~~~~~g~~~~A~~l~~~m~~~~~~--t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~Li~~y~k~g~~~~A~ 360 (778)
.+...|++.+|+..+......+.. ............|+++........+. ..+..........+...|++++|.
T Consensus 350 ~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~ 429 (903)
T PRK04841 350 AWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVN 429 (903)
T ss_pred HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHH
Confidence 345556666665555444332111 11111223344566776666666553 233444445556667788888888
Q ss_pred HHhhhCCC----CC---e---e--ehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCc----ccccchHHHhcccccHHH
Q 004024 361 NLFDRMPQ----HD---C---I--SWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNR----SPFTSVLSTCANLASLEL 424 (778)
Q Consensus 361 ~~f~~m~~----~d---~---~--~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~~~~ 424 (778)
..++...+ .+ . . ....+...+...|++++|...+++....-...+. .....+...+...|+++.
T Consensus 430 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~ 509 (903)
T PRK04841 430 TLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELAR 509 (903)
T ss_pred HHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHH
Confidence 87765421 11 1 1 1111223456788999999999887653111111 122233334566889999
Q ss_pred HHHHHHHHHHc----CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-------CC----hhHHHHHHHHHHHcCCh
Q 004024 425 GKQLHGQLVKV----GF-EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-------KD----VISWNTMIAGYARHGFG 488 (778)
Q Consensus 425 a~~i~~~~~~~----g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~d----~~~~~~li~~~~~~g~~ 488 (778)
+...+...... |- .........+...+...|++++|...+++... ++ ...+..+...+...|++
T Consensus 510 A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~ 589 (903)
T PRK04841 510 ALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL 589 (903)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH
Confidence 98888777543 21 11123445567778889999999998876533 11 22344455566777999
Q ss_pred HHHHHHHHHHHHCC--CCCC--hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHH-----HHHHHHHhhcCCH
Q 004024 489 KDALMLFESMKTVG--IKPD--DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHY-----TCMVDLLGRAGRL 559 (778)
Q Consensus 489 ~~Al~l~~~m~~~g--~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-----~~lv~~l~r~g~~ 559 (778)
++|...+.+..... ..|. ..++..+.......|+.++|.+.+...............+ ......+...|+.
T Consensus 590 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 669 (903)
T PRK04841 590 DEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK 669 (903)
T ss_pred HHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH
Confidence 99999998876531 1222 2234445556778899999999888875421111111111 1122445568999
Q ss_pred HHHHHHHHhCCC-C-CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCCchHHHHHHHhhhcCCcch
Q 004024 560 DEAQNLMKNMPF-E-PDA----ATWGALLGACRLYGKTELAEKAAEVIFEMEP------ENAGMYVLLSNLYAASGRWGD 627 (778)
Q Consensus 560 ~eA~~~~~~m~~-~-p~~----~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p------~~~~~y~~L~~~y~~~g~~~~ 627 (778)
++|.+.+..... . ... ..+..+..++...|+.+.|...++++++... .....+..++.+|...|+.++
T Consensus 670 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~ 749 (903)
T PRK04841 670 EAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE 749 (903)
T ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999877621 1 111 1244566777888999999999999887532 123467788999999999999
Q ss_pred HHHHHHHHHhC
Q 004024 628 VSKVRLKMRDR 638 (778)
Q Consensus 628 a~~~~~~m~~~ 638 (778)
|.+.+....+.
T Consensus 750 A~~~L~~Al~l 760 (903)
T PRK04841 750 AQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHH
Confidence 99988777653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-05 Score=82.09 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=95.4
Q ss_pred HHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHH
Q 004024 348 TGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQ 427 (778)
Q Consensus 348 ~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 427 (778)
.+|...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+.+ .| .+..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~----------------- 167 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILT----------------- 167 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHH-----------------
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHH-----------------
Confidence 4556667777777766654 233344455666777777777777777776532 11 1111
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 004024 428 LHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIK 504 (778)
Q Consensus 428 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~ 504 (778)
.+..+.+..+.-.+.+.+|..+|+++.+ +++.+.|.+..++.+.|++++|.+++.+..+ ..
T Consensus 168 --------------qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~ 231 (290)
T PF04733_consen 168 --------------QLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KD 231 (290)
T ss_dssp --------------HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-
T ss_pred --------------HHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hc
Confidence 1233445555444567888888888755 4566777788888888888888888888665 44
Q ss_pred CC-hhHHHHHHHHHhccCcH-HHHHHHHHHchhh
Q 004024 505 PD-DITMVGILSACSHTGLV-EKGTEYFYSMNRD 536 (778)
Q Consensus 505 pd-~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~ 536 (778)
|+ ..|+..++....+.|.. +.+.+++..+...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 54 44677777777888877 6677788887754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0029 Score=67.57 Aligned_cols=174 Identities=15% Similarity=0.078 Sum_probs=110.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcH
Q 004024 447 LLVMYCKCGSVEEAYHAFEEIVD--KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLV 523 (778)
Q Consensus 447 Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~ 523 (778)
+...|.+.++.+.|...|.+... ++.... .+....++++...+...- +.|+.. -.-.-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l-------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL-------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH-------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 34467777888888888877543 221111 122334555555554443 444432 122224566778888
Q ss_pred HHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHH
Q 004024 524 EKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDA-ATWGALLGACRLYGKTELAEKAAEVI 601 (778)
Q Consensus 524 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~Ll~a~~~~g~~~~a~~~~~~~ 601 (778)
..|...+.++++. -+-|...|..-.-.|.+.|.+.+|++=-+.. ...|+. -.|.-=..++..-.+++.|...+++.
T Consensus 375 ~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887754 1335777888888888888888777655444 345553 34544455566667899999999999
Q ss_pred HhcCCCCCchHHHHHHHhhhcCCcchHHHH
Q 004024 602 FEMEPENAGMYVLLSNLYAASGRWGDVSKV 631 (778)
Q Consensus 602 ~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~ 631 (778)
++++|++......+...+.....-+...++
T Consensus 453 le~dp~~~e~~~~~~rc~~a~~~~~~~ee~ 482 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEAQRGDETPEET 482 (539)
T ss_pred HhcCchhHHHHHHHHHHHHHhhcCCCHHHH
Confidence 999999988888887777664333333333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-05 Score=73.96 Aligned_cols=121 Identities=12% Similarity=0.078 Sum_probs=87.6
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 004024 493 MLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-P 570 (778)
Q Consensus 493 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~ 570 (778)
.+|++..+ +.|+. +.....++...|++++|...|..... +.| +...|..+..++.+.|++++|...+++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555554 45554 33445566667777777777776653 334 5666777788888888888888888776 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 571 FEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 571 ~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
..| ++..|..+..++...|+.++|...+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 455 46788888888888999999999999999999999888888777654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.8e-05 Score=82.58 Aligned_cols=257 Identities=9% Similarity=0.056 Sum_probs=134.1
Q ss_pred HHHHHhcCChhHHHHHhhhCCC--CCeeeh-hhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcc-----
Q 004024 347 ITGYAQSGEITHARNLFDRMPQ--HDCISW-AAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCAN----- 418 (778)
Q Consensus 347 i~~y~k~g~~~~A~~~f~~m~~--~d~~~~-~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~----- 418 (778)
...+...|++++|++.++.-.. .|..+| ......|.+.|+.++|..+|+.+...+ ||...|-..+..|..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3456778888888888876543 344444 445566778888888888888888754 676666555544431
Q ss_pred -cccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 419 -LASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFES 497 (778)
Q Consensus 419 -~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~ 497 (778)
....+.-.+++..+...- |.......+.-.+..-..+ -..+...+..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F------------------------------~~~~~~yl~~ 136 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEF------------------------------KERLDEYLRP 136 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHH------------------------------HHHHHHHHHH
Confidence 112333344444332221 1100000010000000011 1123333344
Q ss_pred HHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhc-------------CCCCChH--HHHHHHHHHhhcCCHHHH
Q 004024 498 MKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDY-------------GVIPNSK--HYTCMVDLLGRAGRLDEA 562 (778)
Q Consensus 498 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-------------~~~p~~~--~y~~lv~~l~r~g~~~eA 562 (778)
+...|+++ +|+.|-.-|......+-..+++....... .-.|+.. ++..+...|-+.|++++|
T Consensus 137 ~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 137 QLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred HHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 44445432 33333333333333333333333222110 1123332 233445666677777777
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCC
Q 004024 563 QNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 563 ~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~ 640 (778)
++++++. ...|. +..|..-...+...|+++.|....+.+.++++.|--.-.-.+..+.++|+.++|.++.......+.
T Consensus 214 l~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 214 LEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 7777654 44555 335556666666777777777777777777777755556666666777777777777666655444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=8e-05 Score=77.79 Aligned_cols=176 Identities=13% Similarity=0.108 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHhccC---CChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCC-ChhHHHHHHH
Q 004024 443 VGNALLVMYCKCG-SVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFG--KDALMLFESMKTVGIKP-DDITMVGILS 515 (778)
Q Consensus 443 ~~~~Li~~y~k~g-~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~--~~Al~l~~~m~~~g~~p-d~~t~~~ll~ 515 (778)
+++-.-..+.+.| .+++++..++++.+ ++..+|+--...+.+.|.. ++++++++++.+ ..| |..+|.....
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w 150 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQW 150 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 3333333444555 46777777776654 4555676555555555553 567777777776 455 4456777777
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhc---CC----HHHHHHHHHh-CCCCCC-HHHHHHHHHHHH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRA---GR----LDEAQNLMKN-MPFEPD-AATWGALLGACR 586 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~---g~----~~eA~~~~~~-m~~~p~-~~~~~~Ll~a~~ 586 (778)
++.+.|++++++++++.+.+. . .-+...|+....++.+. |. .+++.++..+ +...|+ ...|+.+.+.+.
T Consensus 151 ~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~ 228 (320)
T PLN02789 151 VLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFK 228 (320)
T ss_pred HHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Confidence 777778888888888877753 1 11344454444444333 22 3466677644 355664 779999999988
Q ss_pred HcC----ChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc
Q 004024 587 LYG----KTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 587 ~~g----~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~ 622 (778)
.++ +...+...+..+++.+|+++.++..|+.+|+..
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 229 DDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 743 446688889999999999999999999999864
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.4e-05 Score=88.12 Aligned_cols=199 Identities=13% Similarity=0.162 Sum_probs=167.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhH
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDK--------DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDIT 509 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~--------d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t 509 (778)
+.+...|-..|......++++.|++++++.... -.-.|.++++.-...|.-+...++|++..+ ..--...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHH
Confidence 556677777788888899999999999987541 245799999999999999999999999987 3333456
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 004024 510 MVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPDAATWGALLGAC 585 (778)
Q Consensus 510 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~Ll~a~ 585 (778)
|..|+..|...+..++|-++++.|.++++ -....|...++.+.+...-+.|.+++++. |-+-......-....-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999999888 45677999999999999999999998776 3222344445555556
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCC
Q 004024 586 RLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 586 ~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~ 640 (778)
.++||.++|+.+|+-++.-.|.-...|..++++-.+.|..+.+..+|++.-..++
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999999999999999999999999988765
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0027 Score=67.67 Aligned_cols=175 Identities=14% Similarity=0.093 Sum_probs=115.3
Q ss_pred hhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHH
Q 004024 387 SEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEA-GCFVGNALLVMYCKCGSVEEAYHAFE 465 (778)
Q Consensus 387 ~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~ 465 (778)
.+.....++++...-..--..+|...++.--+..-++.|+.+|..+.+.+..+ +++++++++..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 34444555555443222223456667777777778888888888888877666 7888888888777 467788888888
Q ss_pred hccC--CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHHHHHHHHHHchhhcC--
Q 004024 466 EIVD--KDV-ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD--ITMVGILSACSHTGLVEKGTEYFYSMNRDYG-- 538 (778)
Q Consensus 466 ~m~~--~d~-~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 538 (778)
--.. +|. .--+..+.-+..-|+-..|..+|++....++.||. ..|..+|.-=+.-|++....++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6544 333 33355566667778888888888888877666664 3677777777777777777777666665554
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHH
Q 004024 539 VIPNSKHYTCMVDLLGRAGRLDEA 562 (778)
Q Consensus 539 ~~p~~~~y~~lv~~l~r~g~~~eA 562 (778)
..|...+-..+++.|+-.+....-
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred hcCCCChHHHHHHHHhhccccccc
Confidence 454444555566666655544433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0015 Score=80.07 Aligned_cols=355 Identities=9% Similarity=0.012 Sum_probs=218.6
Q ss_pred HHHHhcCCCHHHHHHHHhhCCCCCeeh--HHHHHHHHHhcCChHHHHHHHHhCCC----CCcchHHHHHHHHhccCChHH
Q 004024 254 ITGYAQNNYLAEAQRLFEEAPVKDVFT--WTAMVSGYVQNGKVDEARMIFDAMPE----KNTVSWNAMIAGYVQTKRMDM 327 (778)
Q Consensus 254 i~~y~~~g~~~~A~~~f~~m~~~d~~~--~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~t~~~ll~~~~~~~~~~~ 327 (778)
...|...|++.+|..........+... ...........|+++.+...+..+.. .+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 344566777777777666655442211 11122234556778777777777632 133333444455567788888
Q ss_pred HHHHHHhhc----cc----cc----cHHHHHHHHHHhcCChhHHHHHhhhCCC----CCe----eehhhHHHHHHhcCCh
Q 004024 328 ARELFEAMT----CK----NV----ASWNTMITGYAQSGEITHARNLFDRMPQ----HDC----ISWAAIIAGYAQSGYS 387 (778)
Q Consensus 328 a~~i~~~~~----~~----~~----~~~~~Li~~y~k~g~~~~A~~~f~~m~~----~d~----~~~~~li~~~~~~g~~ 387 (778)
+...+..+. .. +. .....+...+...|++++|...+++..+ .+. ..++.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 888877664 11 11 1122234556778999999888887532 221 2345555667788999
Q ss_pred hHHHHHHHHHhhcCcccC-----cccccchHHHhcccccHHHHHHHHHHHHHc----CCCC---chhHHHHHHHHHHhcC
Q 004024 388 EDSLRLFIEMKRYGERLN-----RSPFTSVLSTCANLASLELGKQLHGQLVKV----GFEA---GCFVGNALLVMYCKCG 455 (778)
Q Consensus 388 ~~Al~l~~~m~~~g~~pd-----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~~---~~~~~~~Li~~y~k~g 455 (778)
++|...+.+.....-... ..++..+...+...|+++.|...+...... +... ...++..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999999988765321111 123334445567789999999888776542 3211 2334555666777889
Q ss_pred CHHHHHHHHHhccC------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CChhHHH-----HHHHHHhccC
Q 004024 456 SVEEAYHAFEEIVD------K--DVISWNTMIAGYARHGFGKDALMLFESMKTVGIK-PDDITMV-----GILSACSHTG 521 (778)
Q Consensus 456 ~~~~A~~~f~~m~~------~--d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-pd~~t~~-----~ll~a~~~~g 521 (778)
++++|...+++... + ....+..+...+...|+.++|.+.+++.....-. .....+. ..+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 99999998887633 1 1234445666788899999999999888552111 1111111 1123445578
Q ss_pred cHHHHHHHHHHchhhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCh
Q 004024 522 LVEKGTEYFYSMNRDYGVIPN--SKHYTCMVDLLGRAGRLDEAQNLMKNM-------PFEPD-AATWGALLGACRLYGKT 591 (778)
Q Consensus 522 ~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~Ll~a~~~~g~~ 591 (778)
..+.+.+++........-.+. ...+..+..++...|+.++|...+++. +..++ ..+...+..++...|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 999999988775431111110 111345667788899999999888765 22222 23566667888899999
Q ss_pred HHHHHHHHHHHhcCCCC
Q 004024 592 ELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 592 ~~a~~~~~~~~~l~p~~ 608 (778)
+.|...+.+++++....
T Consensus 748 ~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 748 SEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999999986543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.2e-05 Score=71.10 Aligned_cols=119 Identities=13% Similarity=-0.004 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
+.+..-.+...+...|++++|.++|+-. -+.|. ..-|-.|...|...|+++.|..++.++..++|+++.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444445666778899999999999887 45664 668999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 004024 620 AASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLK 683 (778)
Q Consensus 620 ~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~ 683 (778)
...|+.+.|.+-|+...... + .+|+-.+|.++-+.....|.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHhh
Confidence 99999999999998766521 1 46777777776666555554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=8e-05 Score=72.44 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=92.2
Q ss_pred cCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH-HHcCC--hHHH
Q 004024 520 TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGAC-RLYGK--TELA 594 (778)
Q Consensus 520 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~-~~~g~--~~~a 594 (778)
.+..+++...+....+. -..+.+.|..+...|...|++++|.+.+++. ...|+ ..+|..+..+. ...|+ .+.|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666555432 2336778888888888999999999988877 45564 66777777764 56676 5899
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 595 EKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 595 ~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
..+++++++++|+++.++..|+..+...|++++|...++.+.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.3e-05 Score=79.19 Aligned_cols=211 Identities=16% Similarity=0.228 Sum_probs=143.4
Q ss_pred hccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCC---eeehhhHHHHHHhcCChhHHHHH
Q 004024 320 VQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQHD---CISWAAIIAGYAQSGYSEDSLRL 393 (778)
Q Consensus 320 ~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~Al~l 393 (778)
.+.|++.+|.-.|+..+ +.+...|--|.......++=..|+..+.+..+-| ....-+|...|...|.-.+|+..
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 34555666665565555 3445556666666666666666666666555433 33444555567777777777777
Q ss_pred HHHHhhcCcc--------cCcccccchHHHhcccccHHHHHHHHHHH-HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 004024 394 FIEMKRYGER--------LNRSPFTSVLSTCANLASLELGKQLHGQL-VKVGFEAGCFVGNALLVMYCKCGSVEEAYHAF 464 (778)
Q Consensus 394 ~~~m~~~g~~--------pd~~t~~~ll~a~~~~~~~~~a~~i~~~~-~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f 464 (778)
|+.-.....+ ++..+-.. ........+....++|-.+ ...+...|+.+...|.-.|--.|+++.|...|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7766443210 11111100 2223334445555555444 55565688888999999999999999999999
Q ss_pred HhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHch
Q 004024 465 EEIVD--K-DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMN 534 (778)
Q Consensus 465 ~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 534 (778)
+.... | |...||-|...++...+.++|+..|++..+ ++|+-+ ....|.-+|...|.+++|.++|-+..
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 98865 3 788999999999999999999999999999 899976 34456668999999999998886643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.2e-05 Score=69.70 Aligned_cols=98 Identities=11% Similarity=-0.057 Sum_probs=87.1
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 539 VIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 539 ~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
+.|+ ++......+...|++++|.+.++.. ...| +...|..+..+|...|+++.|...++++++++|+++.++..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3454 4566788899999999999999887 4556 5779999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcchHHHHHHHHHhC
Q 004024 617 NLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 617 ~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
.+|...|+.++|.+.++...+.
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999887664
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00013 Score=73.66 Aligned_cols=179 Identities=14% Similarity=0.094 Sum_probs=124.7
Q ss_pred cccchHHHhcccccHHHHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-hh---HHHHHH
Q 004024 408 PFTSVLSTCANLASLELGKQLHGQLVKVGFE-A-GCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KD-VI---SWNTMI 479 (778)
Q Consensus 408 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d-~~---~~~~li 479 (778)
.+......+...|+++.|...+..+.+..-. + ....+..+...|.+.|++++|...|+++.+ |+ .. +|..+.
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g 114 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRG 114 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHH
Confidence 4555566778899999999999998775421 1 124567788999999999999999999865 32 22 455566
Q ss_pred HHHHHc--------CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 480 AGYARH--------GFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 480 ~~~~~~--------g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
.++.+. |+.++|++.|+++.. ..|+..-....+.... .... .. ......+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~---~~~~------~~---------~~~~~~~a~ 174 (235)
T TIGR03302 115 LSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMD---YLRN------RL---------AGKELYVAR 174 (235)
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHH---HHHH------HH---------HHHHHHHHH
Confidence 666654 788999999999988 5676532211111110 0000 00 011235667
Q ss_pred HHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 004024 552 LLGRAGRLDEAQNLMKNM----PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEP 606 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m----~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p 606 (778)
.|.+.|++++|...+++. |-.|. ...|..+..++...|+.+.|...++.+...-|
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 889999999999988776 43343 56889999999999999999998888776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0011 Score=65.15 Aligned_cols=398 Identities=12% Similarity=0.049 Sum_probs=216.2
Q ss_pred hhHHHHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC--CCeehHH-HHHHHHHhcC
Q 004024 219 WNSLMGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV--KDVFTWT-AMVSGYVQNG 292 (778)
Q Consensus 219 ~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~-~li~~~~~~g 292 (778)
+++.+..+.+..++++|.+++..-. +++....+.|...|-...++..|-..++++.. |...-|. --...+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 3444444555556666666554443 23445566777777788888888888877653 2222221 1234456678
Q ss_pred ChHHHHHHHHhCCCC-CcchHHHHHH--HHhccCChHHHHHHHHhhc-cccccHHHHHHHHHHhcCChhHHHHHhhhCCC
Q 004024 293 KVDEARMIFDAMPEK-NTVSWNAMIA--GYVQTKRMDMARELFEAMT-CKNVASWNTMITGYAQSGEITHARNLFDRMPQ 368 (778)
Q Consensus 293 ~~~~A~~l~~~m~~~-~~~t~~~ll~--~~~~~~~~~~a~~i~~~~~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 368 (778)
.+.+|+.+...|... +...-..-+. .....+++..++.+.++.. +.+..+.+...-...+.|+.+.|.+-|....+
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 888888888888764 2111111122 2234677777777777776 45566666666667788899999988887764
Q ss_pred ----CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCccc----ccchHHHhcccccHHHHHHHHHHHHHcCCCCc
Q 004024 369 ----HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSP----FTSVLSTCANLASLELGKQLHGQLVKVGFEAG 440 (778)
Q Consensus 369 ----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 440 (778)
...+.||.-+. ..+.|+...|+++..++.+.|++--... -+-.++ ...+..-..+|...+
T Consensus 173 vsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD----vrsvgNt~~lh~Sal------- 240 (459)
T KOG4340|consen 173 VSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID----VRSVGNTLVLHQSAL------- 240 (459)
T ss_pred hcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc----hhcccchHHHHHHHH-------
Confidence 23456665544 4466888999999999888876532110 000111 000011111111111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHH
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGIL 514 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll 514 (778)
+..+|.-...+-+.|+.+.|.+.+-.|+. -|++|...|.-.- ..|++-+..+-+.-+.+ +.| ...||..++
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~--~nPfP~ETFANlL 317 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ--QNPFPPETFANLL 317 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh--cCCCChHHHHHHH
Confidence 11222233456788999999999999975 3788876654322 23444444444444444 345 356999999
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHh-hcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCh
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLG-RAGRLDEAQNLMKNMPFEPD--AATWGALLGACRLYGKT 591 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~-r~g~~~eA~~~~~~m~~~p~--~~~~~~Ll~a~~~~g~~ 591 (778)
-.|++...++-|-.++.+-..-.---.+...|+ |++.+. -.-..++|++-+....-.-. ......-+.-- ++.+-
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~-r~~~d 395 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEA-RHNRD 395 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhccc
Confidence 999999999988887754211000001223333 233333 23456666655544310000 00000000111 12222
Q ss_pred HHH----HHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 592 ELA----EKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 592 ~~a----~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
+++ .+-++..+|+- -.....-+++|-...++.-+.++|..-.
T Consensus 396 d~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 396 DEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 222 22223333321 1234455777888888888888876543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.9e-06 Score=56.02 Aligned_cols=35 Identities=40% Similarity=0.692 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD 507 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~ 507 (778)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.8e-05 Score=82.70 Aligned_cols=215 Identities=15% Similarity=0.086 Sum_probs=112.4
Q ss_pred cHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccc
Q 004024 341 ASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLA 420 (778)
Q Consensus 341 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 420 (778)
..-..+...+.++|-...|..+|+++. .|.-.|-.|...|+..+|..+.++-.+ -
T Consensus 399 q~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k------------------ 453 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--K------------------ 453 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--C------------------
Confidence 344566778888888888888888763 477778888888888888777776655 2
Q ss_pred cHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 421 SLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 421 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
+|+...|..|.|....-.-++.|.++++....+--.+|+-.+ .+.++++++.+.|+.-.+
T Consensus 454 -----------------~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~---~~~~~fs~~~~hle~sl~ 513 (777)
T KOG1128|consen 454 -----------------DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLI---LSNKDFSEADKHLERSLE 513 (777)
T ss_pred -----------------CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhcccc---ccchhHHHHHHHHHHHhh
Confidence 334444444444444444455555555544332111222111 124566666666665444
Q ss_pred CCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHH
Q 004024 501 VGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFE-PDAA 576 (778)
Q Consensus 501 ~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~ 576 (778)
+.|= ..||-....+..+.++++.+.+.|.... ...| +.+.||.+-.+|.+.|+..+|...+++. ... -+.-
T Consensus 514 --~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~ 588 (777)
T KOG1128|consen 514 --INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ 588 (777)
T ss_pred --cCccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe
Confidence 3332 2244444444445555555555554433 2233 2344444444555555555554444443 111 1223
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 577 TWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 577 ~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
+|....-....-|+.+.|.+++.++.++.
T Consensus 589 iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 589 IWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred eeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 45444444445555555555555555543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00015 Score=79.49 Aligned_cols=188 Identities=19% Similarity=0.134 Sum_probs=124.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 004024 436 GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILS 515 (778)
Q Consensus 436 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~ 515 (778)
+++|-...--.+.+.+.++|-..+|..+|++. ..|--.|..|...|+..+|..+..+-.+ -+||+.-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45677777778889999999999999999874 4677788999999999999998888777 5788888988888
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTEL 593 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~ 593 (778)
..-....+++|+++++..... .-..+.....+.++++++.+.++.. .+.|- ..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888888888888765432 0001111222345555555555432 33342 3455555555555555555
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 594 AEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 594 a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
|.++|...+.++|++...++.|+-.|...|+-.+|...+++..+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 666666556666666555666665565555555555555554443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00023 Score=69.78 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=102.9
Q ss_pred HHhcCCHHHHHHHHHhccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHH
Q 004024 451 YCKCGSVEEAYHAFEEIVD----KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 451 y~k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a 526 (778)
.-|.|+.+.|.+-|+...+ ...+.||.-+ +.-+.|++..|+++..+.++.|++-.+.. ..|.+-++
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPEl---------gIGm~teg 223 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPEL---------GIGMTTEG 223 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCcc---------Cccceecc
Confidence 4467777777777777655 3445666544 34456888888888888888886532210 01221121
Q ss_pred HHHHHHchhhcCCCCChHHHHHH-------HHHHhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCChHHHH
Q 004024 527 TEYFYSMNRDYGVIPNSKHYTCM-------VDLLGRAGRLDEAQNLMKNMP----FEPDAATWGALLGACRLYGKTELAE 595 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p~~~~y~~l-------v~~l~r~g~~~eA~~~~~~m~----~~p~~~~~~~Ll~a~~~~g~~~~a~ 595 (778)
..+ +.. -.|-.-|-+.+ ...+.+.|+.+.|.+-+..|| -+.|++|...+.-. -..+++..+.
T Consensus 224 iDv-rsv-----gNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~ 296 (459)
T KOG4340|consen 224 IDV-RSV-----GNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGF 296 (459)
T ss_pred Cch-hcc-----cchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccH
Confidence 110 000 01112222333 334567888999999888886 23467776554322 2345666777
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHH
Q 004024 596 KAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 596 ~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
+-+.-+++++|-.+.++-.|.-+|++..-++-|..+..
T Consensus 297 ~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 297 EKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 77778888888777888888888988888888887764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00023 Score=83.14 Aligned_cols=200 Identities=17% Similarity=0.182 Sum_probs=138.3
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHhhc--------cccccHHHHHHHHHHhcCChhHHHHHhhhCCCC-C-eeehhhH
Q 004024 308 NTVSWNAMIAGYVQTKRMDMARELFEAMT--------CKNVASWNTMITGYAQSGEITHARNLFDRMPQH-D-CISWAAI 377 (778)
Q Consensus 308 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~--------~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-d-~~~~~~l 377 (778)
....|...+.-....++++.|+.+.+++. +.-..+|.+++++-.--|.-+...++|++..+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34556666666666666666666666665 112345666666666666666667777766542 2 2456666
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCC
Q 004024 378 IAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGF-EAGCFVGNALLVMYCKCGS 456 (778)
Q Consensus 378 i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~Li~~y~k~g~ 456 (778)
...|.+.+..++|-++|+.|.+. +.-....|...+..+.+...-+.|+.++.++++.-- ...+.+..-.+.+-.|+|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 67777777777777777777653 233444555666666666666667777666665421 1245556667788889999
Q ss_pred HHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 004024 457 VEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI 508 (778)
Q Consensus 457 ~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~ 508 (778)
.+.++.+|+.... +-...|+..|..-.+||+.+.+..+|++....++.|-..
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 9999999998865 356789999999999999999999999999998888643
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.1e-06 Score=55.42 Aligned_cols=35 Identities=29% Similarity=0.537 Sum_probs=33.0
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCc
Q 004024 372 ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNR 406 (778)
Q Consensus 372 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~ 406 (778)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00082 Score=70.97 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHH-HHHhccCcHHHHHHHHHHchhhcCCCCC-hHHHHHH
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGIL-SACSHTGLVEKGTEYFYSMNRDYGVIPN-SKHYTCM 549 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 549 (778)
...|.-..-.+...|+.++|+..++.++. -.||..-|..+. ..+...|++++|.+.++.+.. ..|+ ....-.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 33444444555667888888888888877 567666555443 466778888888888887764 3554 3444556
Q ss_pred HHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcch
Q 004024 550 VDLLGRAGRLDEAQNLMKNM--PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGD 627 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~ 627 (778)
.++|.+.|++++|...++.. ..+-|+..|..|..+|...||..++..+. +..|+-.|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHH
Confidence 77888888888888888776 23346788999999999988877766544 456778899999
Q ss_pred HHHHHHHHHhCC
Q 004024 628 VSKVRLKMRDRG 639 (778)
Q Consensus 628 a~~~~~~m~~~g 639 (778)
|.......+++.
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 998888877754
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00033 Score=68.15 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=106.1
Q ss_pred CCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 004024 503 IKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM--PFEPDAATWGA 580 (778)
Q Consensus 503 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ 580 (778)
..|+.......-.++.-.|+-+.+..+.......++ -+.+.....+....+.|++.+|...+++. +-.||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 456443335555677777777777777665433211 23444555888899999999999999988 44567889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 581 LLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 581 Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
+.-+|-+.|+.+.|...+.+++++.|+++.++..|+-.|.-.|+.++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999988776543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00046 Score=67.10 Aligned_cols=155 Identities=8% Similarity=0.103 Sum_probs=112.2
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHH
Q 004024 448 LVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 448 i~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 526 (778)
+-+|.+.|+++......+.+..+. ..|...++.++++..+++..+ ..|+ ...|..+...+...|+.++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456788888777655544332221 011225666778877877777 4554 45677777788888999999
Q ss_pred HHHHHHchhhcCCCC-ChHHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 527 TEYFYSMNRDYGVIP-NSKHYTCMVDLL-GRAGR--LDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEV 600 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p-~~~~y~~lv~~l-~r~g~--~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~ 600 (778)
...|+...+ +.| +...+..+..++ .+.|+ .++|.+++++. ...|+ ..++..|..++...|+++.|+..+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 988887764 445 577777888764 67777 58999999887 45664 67888888999999999999999999
Q ss_pred HHhcCCCCCchHHHH
Q 004024 601 IFEMEPENAGMYVLL 615 (778)
Q Consensus 601 ~~~l~p~~~~~y~~L 615 (778)
+++++|.+..-+-.+
T Consensus 170 aL~l~~~~~~r~~~i 184 (198)
T PRK10370 170 VLDLNSPRVNRTQLV 184 (198)
T ss_pred HHhhCCCCccHHHHH
Confidence 999998876555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0028 Score=63.67 Aligned_cols=342 Identities=12% Similarity=0.062 Sum_probs=168.0
Q ss_pred HHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHH---HHHHhcCChHHHHHHHHhCCCCCcchHHHH---HHHHhccCChH
Q 004024 253 MITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMV---SGYVQNGKVDEARMIFDAMPEKNTVSWNAM---IAGYVQTKRMD 326 (778)
Q Consensus 253 li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~~~~t~~~l---l~~~~~~~~~~ 326 (778)
|...+...|++.+|+.-|....+-|+..|-++. ..|...|+..-|+.=|.+.++.-+..+.+- ...+.+.|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 444455556666666666666655555555543 345556666666655555544322112111 22455667777
Q ss_pred HHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCc
Q 004024 327 MARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNR 406 (778)
Q Consensus 327 ~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~ 406 (778)
.|..-|+.++..++.- +....++.+.--+++-+.+. .++..+.-+|+...|++....+.+ +.|-.
T Consensus 124 ~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l~------------~ql~s~~~~GD~~~ai~~i~~llE--i~~Wd 188 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVLV------------QQLKSASGSGDCQNAIEMITHLLE--IQPWD 188 (504)
T ss_pred HHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHHH------------HHHHHHhcCCchhhHHHHHHHHHh--cCcch
Confidence 7777776666222210 11112222222222221111 122333445555555555555544 22322
Q ss_pred cc-ccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHH
Q 004024 407 SP-FTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDVISWNTMIAGYA 483 (778)
Q Consensus 407 ~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~ 483 (778)
.. +..=..++...|.+..|..-...+.+..-+ ++...--+-..|-+.|+.+.++...++..+ ||--.. |.
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C------f~ 261 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC------FP 261 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH------HH
Confidence 22 222223344455555554444444443322 333333455667778888888888887765 332211 11
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC-----hHHHHHHHHHHhhcCC
Q 004024 484 RHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN-----SKHYTCMVDLLGRAGR 558 (778)
Q Consensus 484 ~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lv~~l~r~g~ 558 (778)
.-....+..+.++.|.+. ...+.+.++.+-.+...+ ..|. ...+..+-..+...|+
T Consensus 262 ~YKklkKv~K~les~e~~----------------ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQA----------------IEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred HHHHHHHHHHHHHHHHHH----------------HhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCC
Confidence 112223333333333321 112222222222222221 1222 1122334445566778
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 559 LDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 559 ~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
+-+|++.-.+. .+.|| +.++.--..|+..-..++.|+.-++++.+++|+|..+-.-+ +.|.++.+...
T Consensus 323 ~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl----------e~Akrlkkqs~ 392 (504)
T KOG0624|consen 323 FGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL----------ERAKRLKKQSG 392 (504)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH----------HHHHHHHHHhc
Confidence 88887776655 56666 55777677777778889999999999999999885443322 44555555444
Q ss_pred hCCCccCCc
Q 004024 637 DRGVKKVTG 645 (778)
Q Consensus 637 ~~g~~k~~g 645 (778)
++..-|+-|
T Consensus 393 kRDYYKILG 401 (504)
T KOG0624|consen 393 KRDYYKILG 401 (504)
T ss_pred cchHHHHhh
Confidence 444444444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00039 Score=80.04 Aligned_cols=186 Identities=12% Similarity=0.120 Sum_probs=139.1
Q ss_pred cccchHH-HhcccccHH-HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc---C---CChhHHHHHH
Q 004024 408 PFTSVLS-TCANLASLE-LGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV---D---KDVISWNTMI 479 (778)
Q Consensus 408 t~~~ll~-a~~~~~~~~-~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~---~d~~~~~~li 479 (778)
|...++. +.+..|.-+ .|+++|.++.+ ++. +.|.+..+..-+-+.. . .++..+-.|.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La 93 (694)
T PRK15179 29 TILDLLEAALAEPGESEEAGRELLQQARQ------------VLE---RHAAVHKPAAALPELLDYVRRYPHTELFQVLVA 93 (694)
T ss_pred HHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHH---HhhhhcchHhhHHHHHHHHHhccccHHHHHHHH
Confidence 4444444 355666544 45677777643 233 3333333332222221 1 3577788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcC
Q 004024 480 AGYARHGFGKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAG 557 (778)
Q Consensus 480 ~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g 557 (778)
....+.|..++|+.+++...+ +.||.. .+..+..++.+.+.+++|+...++... ..| +..+...+..++.+.|
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhc
Confidence 889999999999999999999 899876 677888899999999999999998864 456 5677788889999999
Q ss_pred CHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 004024 558 RLDEAQNLMKNMP-FEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYV 613 (778)
Q Consensus 558 ~~~eA~~~~~~m~-~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~ 613 (778)
+.++|.++|++.- -.|+ +.+|.++..++...|+.+.|..+|+++++...+.+..|.
T Consensus 169 ~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 169 QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 9999999999882 3455 779999999999999999999999999998766555543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00088 Score=77.95 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=49.3
Q ss_pred chHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHH
Q 004024 411 SVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKD 490 (778)
Q Consensus 411 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~ 490 (778)
.+..+|.++|..+++..+++.+++.. +.|+.+.|-+...|+.. ++++|.+++.+.. .-|...+++.+
T Consensus 121 ~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~kq~~~ 187 (906)
T PRK14720 121 TLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKKQYVG 187 (906)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhhcchH
Confidence 34444455555555555555555554 55666666667677766 7777766665532 22555566777
Q ss_pred HHHHHHHHHHCCCCCChh
Q 004024 491 ALMLFESMKTVGIKPDDI 508 (778)
Q Consensus 491 Al~l~~~m~~~g~~pd~~ 508 (778)
+.+++.++.. ..|+.+
T Consensus 188 ~~e~W~k~~~--~~~~d~ 203 (906)
T PRK14720 188 IEEIWSKLVH--YNSDDF 203 (906)
T ss_pred HHHHHHHHHh--cCcccc
Confidence 7777777766 455544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00012 Score=66.55 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=81.3
Q ss_pred CCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 539 VIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 539 ~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
..| +......+...+...|+.++|.+.++.. ...| +...|..+...+...|+.+.|...++++++++|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 344 3445666777788888888888888776 4445 467888888888889999999999999999999999999999
Q ss_pred HHHhhhcCCcchHHHHHHHHHhC
Q 004024 616 SNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 616 ~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
+.+|...|++++|.+.++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998876653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00094 Score=76.97 Aligned_cols=144 Identities=13% Similarity=0.060 Sum_probs=118.0
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHH-
Q 004024 436 GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMV- 511 (778)
Q Consensus 436 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~- 511 (778)
.++.++..+--|.......|.+++|..+++...+ | +...+..++..+.+.+++++|+..+++... ..||..+..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 4566788888899999999999999999999866 5 456788899999999999999999999998 789877655
Q ss_pred HHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 004024 512 GILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM--PFEPDAATWGALLG 583 (778)
Q Consensus 512 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~Ll~ 583 (778)
.+..++.+.|..++|..+|+.+... ..-+...+..+..++...|+.++|...|++. -..|..-.|+.+++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 4555778999999999999999862 2224778888999999999999999999887 23455555555543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.9e-05 Score=52.28 Aligned_cols=34 Identities=38% Similarity=0.656 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKP 505 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p 505 (778)
+.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888999999998888887
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00069 Score=65.98 Aligned_cols=152 Identities=15% Similarity=0.055 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhcc
Q 004024 445 NALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHT 520 (778)
Q Consensus 445 ~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~ 520 (778)
.-+-..|--.|+-+++..+...... .|....+..+....+.|++.+|+..|++... ..| |..+++.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 3344445555555555555555322 3444455566666666666666666666655 333 344555555566666
Q ss_pred CcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHH
Q 004024 521 GLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFE--PDAATWGALLGACRLYGKTELAEKAA 598 (778)
Q Consensus 521 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~--p~~~~~~~Ll~a~~~~g~~~~a~~~~ 598 (778)
|+.++|..-|.+..+-.+-+ ...++.|.-.|.-.|++++|..++...-.. .|..+-..|.-+-...|+++.|+.+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNE--PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCC--chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666665555432222 233455555555556666666655554211 23445555555555556655555554
Q ss_pred HH
Q 004024 599 EV 600 (778)
Q Consensus 599 ~~ 600 (778)
.+
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 43
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.061 Score=57.75 Aligned_cols=160 Identities=13% Similarity=0.117 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
.+|-..+..-.+..-.+.|..+|.+..+.+..+-++ ...+++. +--+++.+-|.++|+.=.+.||-.| .--.+.+|
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p--~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSP--EYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCCh--HHHHHHHH
Confidence 357777777777777889999999999999888444 4444444 4457888999999998777666544 33457888
Q ss_pred HHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC----chHHHHHHHhhhc
Q 004024 552 LLGRAGRLDEAQNLMKNM---PFEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPENA----GMYVLLSNLYAAS 622 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m---~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~----~~y~~L~~~y~~~ 622 (778)
-|.+.|+-.-|..+|++. .+.|| ..+|..+|.-=..-||+....++-++....-|.+. ..-.++...|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 899999999999999887 23455 46999999999999999999999998887655221 2234556677777
Q ss_pred CCcchHHHHHHHH
Q 004024 623 GRWGDVSKVRLKM 635 (778)
Q Consensus 623 g~~~~a~~~~~~m 635 (778)
+....-..-++.|
T Consensus 524 d~~~c~~~elk~l 536 (656)
T KOG1914|consen 524 DLYPCSLDELKFL 536 (656)
T ss_pred ccccccHHHHHhh
Confidence 7776655555555
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0014 Score=69.33 Aligned_cols=119 Identities=19% Similarity=0.178 Sum_probs=104.9
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTE 592 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~ 592 (778)
.....|..++|+..+..+.+. .| |+.-.....+++.++|+.++|.+.++++ ...|+ ...|-.+..++.+.|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 455779999999999998753 45 5666667889999999999999999988 56777 778889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 593 LAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 593 ~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+|++.++....-+|+++..|..|+..|...|+..++..-+.++-.
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00019 Score=76.54 Aligned_cols=121 Identities=17% Similarity=0.101 Sum_probs=95.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 004024 511 VGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLY 588 (778)
Q Consensus 511 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~ 588 (778)
.+++..+...+++++|.++|+++.+. .|+ ....|+.++...++-.+|.+++++. ...| |...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 45566666777788888888877654 244 3445777777778888888888776 2233 556666666778889
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 589 GKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 589 g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
++.+.|..+++++.++.|++..++..|+.+|...|+|++|.-....+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999998888764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0028 Score=66.32 Aligned_cols=181 Identities=13% Similarity=0.108 Sum_probs=130.7
Q ss_pred HHHHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc-
Q 004024 449 VMYCKCGSVEEAYHAFEEIVDK---DVISWNTMIAGYARHG-FGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGL- 522 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g-~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~- 522 (778)
..+.+.++.++|..+.+++.+. +..+|+.--..+...| +.++++..++++.+ ..|+. .+|......+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHcCch
Confidence 3455567888999999888653 4556776666677777 67999999999998 45644 345544444555665
Q ss_pred -HHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCh----
Q 004024 523 -VEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLY---GKT---- 591 (778)
Q Consensus 523 -~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~---g~~---- 591 (778)
.++...+++.+.+ +.| +...|+....++.+.|++++|++.++++ ...| |..+|+.....+... |..
T Consensus 123 ~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 3677888877764 345 5677888888888999999999999988 3344 577888877666554 222
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHhhhcC----CcchHHHHHHH
Q 004024 592 ELAEKAAEVIFEMEPENAGMYVLLSNLYAASG----RWGDVSKVRLK 634 (778)
Q Consensus 592 ~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g----~~~~a~~~~~~ 634 (778)
+......+++++++|+|.+++.-+..+|...+ +..+|.+....
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 46777778999999999999999999998743 33445555443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.9e-05 Score=51.36 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=30.9
Q ss_pred eeehhhHHHHHHhcCChhHHHHHHHHHhhcCccc
Q 004024 371 CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERL 404 (778)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p 404 (778)
+.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999999887
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0019 Score=75.30 Aligned_cols=147 Identities=11% Similarity=0.153 Sum_probs=108.7
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhc
Q 004024 308 NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQS 384 (778)
Q Consensus 308 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~ 384 (778)
+...+..+..+|.+.|+.+++..++++++ +.|+.+.|.+...|+.. ++++|++++.+... .|...
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~-----------~~i~~ 182 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY-----------RFIKK 182 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH-----------HHHhh
Confidence 44567778888888888888888888888 67788888888888888 88888888776533 37777
Q ss_pred CChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004024 385 GYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKV-GFEAGCFVGNALLVMYCKCGSVEEAYHA 463 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 463 (778)
+++.++++++.++... .|+.+. .-.++.+.+... |+..-+.++-.|...|-+..+++++..+
T Consensus 183 kq~~~~~e~W~k~~~~--~~~d~d---------------~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 183 KQYVGIEEIWSKLVHY--NSDDFD---------------FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred hcchHHHHHHHHHHhc--Ccccch---------------HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 8888999999888764 244332 223344444433 5555666777788889999999999999
Q ss_pred HHhccC---CChhHHHHHHHHHH
Q 004024 464 FEEIVD---KDVISWNTMIAGYA 483 (778)
Q Consensus 464 f~~m~~---~d~~~~~~li~~~~ 483 (778)
|+.+.+ .|.....-++..|.
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHH
Confidence 998866 45566677777776
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00099 Score=71.11 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=103.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhc
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSH 519 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~ 519 (778)
-.+-.+|+..+...++++.|..+|+++.+.++..+..|+..+...++..+|++++++... ..|+. .....-...|..
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLS 246 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 344456777778889999999999999887777777788889899999999999999987 45544 334444456788
Q ss_pred cCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 004024 520 TGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLMKNMPFEP 573 (778)
Q Consensus 520 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p 573 (778)
.++.+.|+++.+.+. ...|+ -.+|..|+..|.+.|++++|+-.++.+|+.|
T Consensus 247 k~~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999887 45674 5689999999999999999999999998654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.5e-05 Score=49.21 Aligned_cols=31 Identities=35% Similarity=0.779 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGI 503 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~ 503 (778)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0013 Score=59.72 Aligned_cols=114 Identities=14% Similarity=0.155 Sum_probs=81.4
Q ss_pred HHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 004024 494 LFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PF 571 (778)
Q Consensus 494 l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~ 571 (778)
++++... ..|+.. ....+...+...|+.++|.+.|+.+... -..+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444 455443 3445555667777788887777776543 1225666777888888888888888888766 33
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 004024 572 EP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGM 611 (778)
Q Consensus 572 ~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 611 (778)
.| +...|..+...+...|+.+.|...++++++++|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 44 46677788888889999999999999999999988553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.60 E-value=6e-05 Score=48.59 Aligned_cols=31 Identities=32% Similarity=0.693 Sum_probs=25.9
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHHHhhcCc
Q 004024 372 ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGE 402 (778)
Q Consensus 372 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~ 402 (778)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887763
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.16 Score=57.99 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCcc
Q 004024 577 TWGALLGACRLYGKT---ELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKK 642 (778)
Q Consensus 577 ~~~~Ll~a~~~~g~~---~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k 642 (778)
+-+.|+..|++.+|. -+|+-++|..+...|.|..+-..|..+|.-.|-...|.++++.|.-+.|..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 456677888888765 356666677777888888888888899999999999998888887666543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.045 Score=57.22 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=80.9
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHH
Q 004024 448 LVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGT 527 (778)
Q Consensus 448 i~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 527 (778)
|.-+...|+...|.++-.+..-||-.-|-..|.+|+..|++++-.++... +-.++-|.-++.+|...|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 44456678889999998888888988999999999999999877665432 224588888899999999999998
Q ss_pred HHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 004024 528 EYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKN 568 (778)
Q Consensus 528 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~ 568 (778)
.+...+. +.--+.+|.++|.+.+|.+.--+
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 8887632 24567888899999988776544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00063 Score=72.81 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=50.6
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHH
Q 004024 553 LGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSK 630 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~ 630 (778)
+.+.|++++|+++++++ ...|+ ...|..+..++...|+++.|...++++++++|+++..|..++.+|...|++++|.+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34455666666655554 33343 44555555666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 004024 631 VRLKMRD 637 (778)
Q Consensus 631 ~~~~m~~ 637 (778)
.++...+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 6655443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00072 Score=67.13 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=46.1
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~ 622 (778)
-+|.+.|..+.|.+--+.. .+.|. .-+|..|..++...|++++|+++|+++++++|+|......|..+--+.
T Consensus 123 AAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 123 AAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 3444444444444433333 34555 347888888888888888888888888888888865555554443333
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.034 Score=57.18 Aligned_cols=206 Identities=21% Similarity=0.226 Sum_probs=143.8
Q ss_pred hcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc-----CCChh--HHHHHHHHHHH---c
Q 004024 416 CANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV-----DKDVI--SWNTMIAGYAR---H 485 (778)
Q Consensus 416 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d~~--~~~~li~~~~~---~ 485 (778)
.-+.|+.+.++++-+..-..- +.-.....++++..+..|+++.|+++.+.-. ++|+. .--.|+.+-++ .
T Consensus 164 Aqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 345677777777776664432 3345677889999999999999999998654 35543 23334443332 3
Q ss_pred CChHHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCC-----H
Q 004024 486 GFGKDALMLFESMKTVGIKPDDIT-MVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGR-----L 559 (778)
Q Consensus 486 g~~~~Al~l~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~-----~ 559 (778)
-+...|...-.+..+ +.||-+. -+.-..++.+.|++.+|-.+++.+.+ .+|.+......+ +.|.|+ +
T Consensus 243 adp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdta~dRl 315 (531)
T COG3898 243 ADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDTALDRL 315 (531)
T ss_pred CChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCcHHHHH
Confidence 456667776666665 8888764 34455688999999999999999864 467776654433 445664 2
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc-CCcchHHHHHH
Q 004024 560 DEAQNLMKNMPFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS-GRWGDVSKVRL 633 (778)
Q Consensus 560 ~eA~~~~~~m~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~-g~~~~a~~~~~ 633 (778)
+.|..+ ++ ++|| ...--++..+-...|++..|...++.+..++|.. +.|.+|+++-... |+-.++.....
T Consensus 316 kRa~~L-~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 316 KRAKKL-ES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred HHHHHH-Hh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHH
Confidence 233222 23 4565 4566677788888999999999999999999988 8899999997655 77776665544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00073 Score=56.05 Aligned_cols=92 Identities=26% Similarity=0.334 Sum_probs=73.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcC
Q 004024 546 YTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASG 623 (778)
Q Consensus 546 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g 623 (778)
+..+...+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+.+.|...++++.++.|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777888888888888776 33443 4677777788888899999999999999999988888889999999999
Q ss_pred CcchHHHHHHHHHh
Q 004024 624 RWGDVSKVRLKMRD 637 (778)
Q Consensus 624 ~~~~a~~~~~~m~~ 637 (778)
++++|.+.++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888776654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.016 Score=56.68 Aligned_cols=134 Identities=14% Similarity=0.089 Sum_probs=71.2
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 004024 429 HGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI 508 (778)
Q Consensus 429 ~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~ 508 (778)
.+.+.......+......-...|.+.|++++|.+.......-+....|. ..+.+..+.+-|.+.+++|++ + -+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~--i-ded~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQ--I-DEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc--c-chHH
Confidence 3444443334443333333446778888888888877743333333332 334455667788888888876 2 2445
Q ss_pred HHHHHHHHHhc----cCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004024 509 TMVGILSACSH----TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 509 t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 569 (778)
|.+.+..++.. .+.+.+|.-+|++|..+ ..|+..+.+-+.-+....|+++||+.++++.
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 66555555432 23455555566555542 3344444444444444455555555555444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.018 Score=55.97 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=119.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC
Q 004024 445 NALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMI---AGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTG 521 (778)
Q Consensus 445 ~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 521 (778)
.-+.-+..-+|+.+.|..+++.+..+=+-+...+. .-+-..|++++|+++++...+.. +.|.+++.--+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 33444556789999999999887552222222211 12445799999999999999865 346677877777777778
Q ss_pred cHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC---ChHHHHH
Q 004024 522 LVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYG---KTELAEK 596 (778)
Q Consensus 522 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g---~~~~a~~ 596 (778)
.--+|++-+....+ .+..|.+.|.-+.++|...|.+++|.--++++ -+.|- +..+..|.......| |++.+.+
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 87788888887776 45568889999999999999999999888888 34553 445555655555444 8899999
Q ss_pred HHHHHHhcCCCCCc
Q 004024 597 AAEVIFEMEPENAG 610 (778)
Q Consensus 597 ~~~~~~~l~p~~~~ 610 (778)
.+++.+++.|.+..
T Consensus 213 yy~~alkl~~~~~r 226 (289)
T KOG3060|consen 213 YYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHhChHhHH
Confidence 99999999996543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00013 Score=60.02 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=54.8
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHH
Q 004024 556 AGRLDEAQNLMKNM----PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKV 631 (778)
Q Consensus 556 ~g~~~eA~~~~~~m----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~ 631 (778)
.|++++|+.+++++ |..|+...|-.+..++...|+++.|..++++ .+.+|.++....+++.+|...|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666665 2222455666677778888888888888887 777777767777778888888888888887
Q ss_pred HHH
Q 004024 632 RLK 634 (778)
Q Consensus 632 ~~~ 634 (778)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.003 Score=58.18 Aligned_cols=83 Identities=20% Similarity=0.166 Sum_probs=39.2
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCC
Q 004024 550 VDLLGRAGRLDEAQNLMKNMP-FEPDA----ATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m~-~~p~~----~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~ 624 (778)
...+...|++++|...++... ..||. ..+-.|...+...|+++.|...++.. .-.|-.+..+.+++++|...|+
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC
Confidence 344445555555555554441 11221 22333444445555555555555431 1222233445566666666666
Q ss_pred cchHHHHHH
Q 004024 625 WGDVSKVRL 633 (778)
Q Consensus 625 ~~~a~~~~~ 633 (778)
+++|...++
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 666665554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00035 Score=54.98 Aligned_cols=64 Identities=25% Similarity=0.236 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcC-CcchHHHHHHHHHh
Q 004024 574 DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASG-RWGDVSKVRLKMRD 637 (778)
Q Consensus 574 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g-~~~~a~~~~~~m~~ 637 (778)
++.+|..+...+...|+++.|+..++++++++|+++.++..++.+|...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 79999988776543
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0027 Score=55.93 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=39.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 004024 546 YTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMY 612 (778)
Q Consensus 546 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y 612 (778)
+..+..++.+.|++++|.+.++.. ...|+ ..+|..+..++...|+.+.|...++++++..|+++...
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 344555566666666666665554 11222 34566666666677777777777777777777765433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0018 Score=57.09 Aligned_cols=96 Identities=18% Similarity=0.080 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHH
Q 004024 544 KHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN---AGMYVLL 615 (778)
Q Consensus 544 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~---~~~y~~L 615 (778)
..+-..+..+.+.|++++|.+.++++ ...|+ ...+..+..++...|+++.|...++.+++..|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34556777788899999999988877 22343 3466678888999999999999999999999886 4568899
Q ss_pred HHHhhhcCCcchHHHHHHHHHhCC
Q 004024 616 SNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 616 ~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
+.+|...|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999887753
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.01 Score=66.42 Aligned_cols=139 Identities=17% Similarity=0.110 Sum_probs=72.5
Q ss_pred cCCChhHHHHHHHHHHHc--C---ChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC
Q 004024 468 VDKDVISWNTMIAGYARH--G---FGKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP 541 (778)
Q Consensus 468 ~~~d~~~~~~li~~~~~~--g---~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 541 (778)
...|...|...+.|.... + ...+|+.+|++..+ ..||.. .+..+..++... ++..|
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~ 394 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQP 394 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCC
Confidence 335778888888775432 2 36789999999998 788853 222221111100 01111
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM---P-FEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~-~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
.. .+.++.+.+..++. + ...++.+|.++.-.....|+.+.|...++++++++| +...|..++.
T Consensus 395 ~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~ 461 (517)
T PRK10153 395 LD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGK 461 (517)
T ss_pred cc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 00 01122222222221 1 122344555554444455666666666666666666 3456666666
Q ss_pred HhhhcCCcchHHHHHHHHHh
Q 004024 618 LYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 618 ~y~~~g~~~~a~~~~~~m~~ 637 (778)
+|...|+.++|.+.++....
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 66666666666666555443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.48 Score=52.50 Aligned_cols=369 Identities=12% Similarity=0.088 Sum_probs=188.4
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhcccC-CccHhhHH----------HHHHHhcCChhHHHHHHhhCCCCChhHHH
Q 004024 183 KNEISWNGLLAAYVQNGRIEEACMLFESKANW-EVVSWNSL----------MGGFVKQKRLGDAKWIFDRMPVRDEVSWN 251 (778)
Q Consensus 183 ~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l----------i~~~~~~g~~~~A~~~~~~m~~~d~~~~~ 251 (778)
|.+..|..+.......-.++-|...|-+.... |+....-| ...-+--|++++|++++-.|..+|.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL---- 765 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL---- 765 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh----
Confidence 44556666665555555555555555433221 21110000 0111224788888888887776664
Q ss_pred HHHHHHhcCCCHHHHHHHHhhCCCCC-----eehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhccCChH
Q 004024 252 TMITGYAQNNYLAEAQRLFEEAPVKD-----VFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMD 326 (778)
Q Consensus 252 ~li~~y~~~g~~~~A~~~f~~m~~~d-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~~~~~ 326 (778)
-|.++.+.|++-...++++.....+ ...|+.+...++....+++|.+.|..-... ...+.++.....++
T Consensus 766 -Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly~le~f~ 839 (1189)
T KOG2041|consen 766 -AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLYRLELFG 839 (1189)
T ss_pred -hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHHHHHhhh
Confidence 3566777788777777776544221 246788888888888888888777664321 12344454444444
Q ss_pred HHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCc
Q 004024 327 MARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNR 406 (778)
Q Consensus 327 ~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~ 406 (778)
+-+.+. .-.+.|....-.+.+|+.+.|.-++|.+.|-+-..|. +-+..|...+++.+|.++-++.+. |..
T Consensus 840 ~LE~la-~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv 909 (1189)
T KOG2041|consen 840 ELEVLA-RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQL----PQV 909 (1189)
T ss_pred hHHHHH-HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccc----hhH
Confidence 433222 2225566677778888888888888888776665542 344556667777777776654432 111
Q ss_pred ccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh---hHHHH-----H
Q 004024 407 SPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDV---ISWNT-----M 478 (778)
Q Consensus 407 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~---~~~~~-----l 478 (778)
.| ++.- .+-++. .+.. + .--|.++.|.|+.-+|-+++.+|.++.. +.+-- .
T Consensus 910 ~t---liak--------~aaqll---~~~~------~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYV 968 (1189)
T KOG2041|consen 910 QT---LIAK--------QAAQLL---ADAN------H-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYV 968 (1189)
T ss_pred HH---HHHH--------HHHHHH---hhcc------h-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHH
Confidence 11 1110 111111 1111 0 1136778888888788788777754211 11111 1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCC
Q 004024 479 IAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGR 558 (778)
Q Consensus 479 i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~ 558 (778)
+.++. ..+..++++-.++....|...|... +..+|..+++-++.+.... | ....|+-.|..--.+-|+
T Consensus 969 L~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g--AEAyHFmilAQrql~eg~ 1036 (1189)
T KOG2041|consen 969 LGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G--AEAYHFMILAQRQLFEGR 1036 (1189)
T ss_pred HHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h--HHHHHHHHHHHHHHHhch
Confidence 11111 1223344444444444443333211 2233444444444443222 1 134555555555667888
Q ss_pred HHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 559 LDEAQNLMKNM----PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 559 ~~eA~~~~~~m----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
++.|+.---.. .+-|-..+|.-|.-+-+....+..--+++-++...
T Consensus 1037 v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1037 VKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred HHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 88887653332 23344555554432222223333333444444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0077 Score=57.28 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=89.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHH
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD--DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYT 547 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~ 547 (778)
....+..+...|...|++++|+..|++.......|+ ...+..+...+.+.|++++|..++...... .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 445677777788888999999999998887433332 246667777788888888888888877643 34 345555
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCc
Q 004024 548 CMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRW 625 (778)
Q Consensus 548 ~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~ 625 (778)
.+..+|...|+...|..-.+.. ...++.|...++++++++|++ |..+.+.+...|+.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 6666777766665554332221 123577888999999999887 66666666666653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.014 Score=53.61 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=41.5
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCh
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYGVIPNS--KHYTCMVDLLGRAGRLDEAQNLMKNMPFEP-DAATWGALLGACRLYGKT 591 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~Ll~a~~~~g~~ 591 (778)
..+...|++++|...|+..... .-.|.. ...-.|..++...|++++|+..++..+-.+ .+..+..+...+...|+.
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCH
Confidence 3444445555555555554432 111111 122234455555666666666665543111 233445555566666666
Q ss_pred HHHHHHHHHH
Q 004024 592 ELAEKAAEVI 601 (778)
Q Consensus 592 ~~a~~~~~~~ 601 (778)
+.|...|+++
T Consensus 135 ~~A~~~y~~A 144 (145)
T PF09976_consen 135 DEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHh
Confidence 6666666554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0018 Score=64.35 Aligned_cols=88 Identities=20% Similarity=0.248 Sum_probs=78.0
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcch
Q 004024 550 VDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGD 627 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~ 627 (778)
.+-+.+.+++++|++.+.+. .+.| |++.|..=..+|.+.|.++.|.+..+.++.++|..+.+|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 44566789999999999877 6666 577778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 004024 628 VSKVRLKMRD 637 (778)
Q Consensus 628 a~~~~~~m~~ 637 (778)
|.+.+++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999886554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.015 Score=56.41 Aligned_cols=180 Identities=16% Similarity=0.178 Sum_probs=133.8
Q ss_pred cCCHHHHHHHHHhccC--------CChh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHH-HHhccCcH
Q 004024 454 CGSVEEAYHAFEEIVD--------KDVI-SWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILS-ACSHTGLV 523 (778)
Q Consensus 454 ~g~~~~A~~~f~~m~~--------~d~~-~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~-a~~~~g~~ 523 (778)
..+.++..+++.++.. ++.. .|..++-+....|+.+.|...++++... + |.+.-...+=. -+-..|+.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 3578888888888743 2222 2344455666789999999999998875 2 66543322222 23457899
Q ss_pred HHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004024 524 EKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM--PFEPDAATWGALLGACRLYGKTELAEKAAEVI 601 (778)
Q Consensus 524 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~ 601 (778)
++|.++++++..+- +-|..+|--=+-++-..|+--+|++-+.+. .+-.|...|.-|-..|...|+++.|...+|.+
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999998752 335666766666777778877888877766 46678999999999999999999999999999
Q ss_pred HhcCCCCCchHHHHHHHhhhcCCcch---HHHHHHHHHh
Q 004024 602 FEMEPENAGMYVLLSNLYAASGRWGD---VSKVRLKMRD 637 (778)
Q Consensus 602 ~~l~p~~~~~y~~L~~~y~~~g~~~~---a~~~~~~m~~ 637 (778)
+=+.|.++..+-.|+.++...|-.+. +.+++....+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999888876443 4445544443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00073 Score=52.39 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=38.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 582 LGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 582 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
...+...|+++.|+..++++++..|+++..+..++.++...|++++|...++.+.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556667777777777777777777777777777777777777777777766654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0036 Score=59.52 Aligned_cols=82 Identities=15% Similarity=0.085 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
...|..+...+.+.|++++|...+++. ...|+ ...|..+...+...|+++.|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345666667777778888888877765 22222 4578888888899999999999999999999999999999999
Q ss_pred HhhhcCC
Q 004024 618 LYAASGR 624 (778)
Q Consensus 618 ~y~~~g~ 624 (778)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 9988777
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0034 Score=59.52 Aligned_cols=93 Identities=12% Similarity=-0.101 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
....|..++..+...|++++|+..+++. .+.|+ +.+|..+...+...|+.+.|...++++++++|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3455666777788889999999988876 23333 358889999999999999999999999999999999999999
Q ss_pred HHhh-------hcCCcchHHHHHHH
Q 004024 617 NLYA-------ASGRWGDVSKVRLK 634 (778)
Q Consensus 617 ~~y~-------~~g~~~~a~~~~~~ 634 (778)
.+|. ..|++++|...++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9998 77888766655543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0034 Score=64.76 Aligned_cols=87 Identities=13% Similarity=0.120 Sum_probs=70.9
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCC
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEP-----DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p-----~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~ 624 (778)
+-..+.|++.+|.+.+.+. .+.| ++-.|.....+....|+.+.|..-.+.+++++|.-..+|..-+++|...++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999888776 4444 455566666677788999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHh
Q 004024 625 WGDVSKVRLKMRD 637 (778)
Q Consensus 625 ~~~a~~~~~~m~~ 637 (778)
|++|.+-++..-+
T Consensus 337 ~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988776554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0024 Score=63.95 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=89.8
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYG---KTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g---~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
|.+.|-.|...|.+.|+.++|..-+.+. .+.| ++..+..+..++.... +..++..++++++.++|.|..+..+|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 7899999999999999999999999877 4444 4667777776665443 568999999999999999999999999
Q ss_pred HHhhhcCCcchHHHHHHHHHhCCCccCCcee
Q 004024 617 NLYAASGRWGDVSKVRLKMRDRGVKKVTGYS 647 (778)
Q Consensus 617 ~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s 647 (778)
-.+...|++.+|...++.|.+......|..+
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 9999999999999999999987665555433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00091 Score=52.37 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=40.5
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 587 LYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 587 ~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..|+++.|...++++++.+|+++.....|+.+|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467888888888888888888888888888888888888888888775544
|
... |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.048 Score=53.48 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=99.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH----Hhh
Q 004024 480 AGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL----LGR 555 (778)
Q Consensus 480 ~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~----l~r 555 (778)
..|...|++++|++..+.... + +... .=.....+...++-|.+.++.|..- .+..+.+-|..+ ..-
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~--l--E~~A--l~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGEN--L--EAAA--LNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccch--H--HHHH--HHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhcc
Confidence 456777888888888776211 1 1111 1122344566778888888888642 233444444444 444
Q ss_pred cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHH-HH
Q 004024 556 AGRLDEAQNLMKNMP--FEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSK-VR 632 (778)
Q Consensus 556 ~g~~~eA~~~~~~m~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~-~~ 632 (778)
.+...+|.-+|++|. ..|++.+.+-...+|...|++++|+.+++.++..+|+++.+...+.-.-...|+-.++.+ ..
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 567889999999883 667888888888888888999999999999999888888877777766677787766643 34
Q ss_pred HHHH
Q 004024 633 LKMR 636 (778)
Q Consensus 633 ~~m~ 636 (778)
..++
T Consensus 266 ~QLk 269 (299)
T KOG3081|consen 266 SQLK 269 (299)
T ss_pred HHHH
Confidence 4443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00034 Score=46.05 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCCchHHHHHHHhhhcCCcchHH
Q 004024 598 AEVIFEMEPENAGMYVLLSNLYAASGRWGDVS 629 (778)
Q Consensus 598 ~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~ 629 (778)
++++++++|+++.+|..|+++|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0071 Score=55.33 Aligned_cols=87 Identities=14% Similarity=0.124 Sum_probs=75.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
.-+-..|++++|+.+|+-. -..| +..-|..|...|...++++.|...+..+..++++||.++...+..|...|+.+.|
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3345789999999999876 2233 4557889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 004024 629 SKVRLKMRD 637 (778)
Q Consensus 629 ~~~~~~m~~ 637 (778)
.+.+....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999987765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0074 Score=64.65 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
...|..+..+|.+.|++++|+..++++ .+.|+ ...|..+..+|...|+++.|...++++++++|+++.....+..+..
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555555666666666666666655 34453 5567777777788888888888888888888888777766665543
Q ss_pred hc
Q 004024 621 AS 622 (778)
Q Consensus 621 ~~ 622 (778)
..
T Consensus 116 kl 117 (356)
T PLN03088 116 KI 117 (356)
T ss_pred HH
Confidence 33
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.03 Score=53.01 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHH
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD--DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTC 548 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~ 548 (778)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|..+++..... .| ....+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 34566666666777777777777777766322221 135556666666777777777776665532 22 2334444
Q ss_pred HHHHHh-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 549 MVDLLG-------RAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 549 lv~~l~-------r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
+..++. +.|++++|... .+.|...++++++.+|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 444444 33444443322 345677778888888865
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.75 Score=51.07 Aligned_cols=58 Identities=19% Similarity=0.119 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHhccCCChhHHHHHHHH--HHHcCChHHHHHHHHHHHH-CCCCCChhHHHHH
Q 004024 455 GSVEEAYHAFEEIVDKDVISWNTMIAG--YARHGFGKDALMLFESMKT-VGIKPDDITMVGI 513 (778)
Q Consensus 455 g~~~~A~~~f~~m~~~d~~~~~~li~~--~~~~g~~~~Al~l~~~m~~-~g~~pd~~t~~~l 513 (778)
|-+.++-++.+.. -+....|.-||-+ ....|..+.|++.--.+.. +.+-|....|..+
T Consensus 1003 ~~l~~~~ri~~n~-WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySll 1063 (1189)
T KOG2041|consen 1003 GLLAEQSRILENT-WRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLL 1063 (1189)
T ss_pred hhhhhHHHHHHhh-hhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHH
Confidence 3344444444322 1334445544444 3456777777775444332 1144444444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0022 Score=49.62 Aligned_cols=61 Identities=25% Similarity=0.332 Sum_probs=50.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 004024 549 MVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 549 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
+...+.+.|++++|.+.+++. ...|+ ...|..+..++...|+++.|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 355677889999999999887 45575 66899999999999999999999999999999874
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.008 Score=62.04 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=88.9
Q ss_pred cHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHH----HHhcCChhHHHHHHHHHhhcCcccCcccccchHHHh
Q 004024 341 ASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAG----YAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTC 416 (778)
Q Consensus 341 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~----~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~ 416 (778)
.+|..++...-+.+.++.|+.+|.+..+....+|...+.. |...++.+.|..+|+...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~gl------------------ 63 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGL------------------ 63 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH------------------
Confidence 3566667777777777777777777665444444433321 112333444555555443
Q ss_pred cccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C----ChhHHHHHHHHHHHcCChHH
Q 004024 417 ANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K----DVISWNTMIAGYARHGFGKD 490 (778)
Q Consensus 417 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~----d~~~~~~li~~~~~~g~~~~ 490 (778)
+. ++.+...+...++++.+.|+.+.|+.+|++... + -...|...|.-=.+.|+.+.
T Consensus 64 -----------------k~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~ 125 (280)
T PF05843_consen 64 -----------------KK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLES 125 (280)
T ss_dssp -----------------HH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHH
T ss_pred -----------------HH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHH
Confidence 33 366778888899999999999999999999866 2 33589999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhHHHHH
Q 004024 491 ALMLFESMKTVGIKPDDITMVGI 513 (778)
Q Consensus 491 Al~l~~~m~~~g~~pd~~t~~~l 513 (778)
+.++.+++.+ .-|+.-++..+
T Consensus 126 v~~v~~R~~~--~~~~~~~~~~f 146 (280)
T PF05843_consen 126 VRKVEKRAEE--LFPEDNSLELF 146 (280)
T ss_dssp HHHHHHHHHH--HTTTS-HHHHH
T ss_pred HHHHHHHHHH--HhhhhhHHHHH
Confidence 9999999988 56664444333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.68 Score=49.05 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHH--HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHH
Q 004024 561 EAQNLMKNMPFEPD----AATWGALLGA--CRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLK 634 (778)
Q Consensus 561 eA~~~~~~m~~~p~----~~~~~~Ll~a--~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~ 634 (778)
+-++++++.++.|- ...-|.|..| ...+|++.++.-...-+.+..| ++.+|.+++-......+++||..++..
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 34556677766553 3455555544 4679999999999999999999 889999999999999999999999874
Q ss_pred H
Q 004024 635 M 635 (778)
Q Consensus 635 m 635 (778)
+
T Consensus 521 L 521 (549)
T PF07079_consen 521 L 521 (549)
T ss_pred C
Confidence 3
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.011 Score=48.80 Aligned_cols=96 Identities=24% Similarity=0.252 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
+|..+...+...|++++|+..|++..+ ..|+. ..+..+...+...|++++|.++|+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------------- 62 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE----------------- 62 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------
Confidence 355566667777777777777777766 33432 3344444444444555555555544432
Q ss_pred HhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 004024 553 LGRAGRLDEAQNLMKNMPFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEP 606 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p 606 (778)
..| +..+|..+...+...|+.+.|...++++++..|
T Consensus 63 ------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 63 ------------------LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred ------------------CCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 122 223455555555556666666666666655554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0028 Score=50.37 Aligned_cols=56 Identities=13% Similarity=0.142 Sum_probs=47.1
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 583 GACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 583 ~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
..+...++++.|..+++++++++|+++..+..++.+|...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888888888888888888888877653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.05 Score=53.02 Aligned_cols=182 Identities=12% Similarity=0.042 Sum_probs=116.5
Q ss_pred HHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCC--CCeee--------hhhHHHHHHhcCChhHHHHHHHHHhhc
Q 004024 331 LFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQ--HDCIS--------WAAIIAGYAQSGYSEDSLRLFIEMKRY 400 (778)
Q Consensus 331 i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~--------~~~li~~~~~~g~~~~Al~l~~~m~~~ 400 (778)
+|.++......-+++|+..|.-..-+++-...|+.-.. ..+.. -+.++..+.-.|.+.-.+.++.+..+.
T Consensus 127 lhAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~ 206 (366)
T KOG2796|consen 127 LHAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY 206 (366)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 44444444455567777766665555555555554322 22222 345556666667777777888888776
Q ss_pred CcccCcccccchHHHhcccccHHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCh
Q 004024 401 GERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVG-----FEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDV 472 (778)
Q Consensus 401 g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-----~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~ 472 (778)
..+.+..-.+.+.+.-.+.|+.+.+...++.+.+.. +.....+.......|.-..++.+|...|++++. .|+
T Consensus 207 ~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~ 286 (366)
T KOG2796|consen 207 YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA 286 (366)
T ss_pred CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence 555555556666666677788888888888776643 233333444444456677888889999988866 355
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGIL 514 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll 514 (778)
+.-|.=.-+..-.|+..+|++..+.|.+ ..|...+-.+++
T Consensus 287 ~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~ 326 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVL 326 (366)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHH
Confidence 5566555555667899999999999988 667665554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.76 Score=47.55 Aligned_cols=96 Identities=10% Similarity=0.074 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----h-hHHHHHHHHHhccCcHHHHHHHHHHchhh-cCCCCC--hHH
Q 004024 475 WNTMIAGYARHGFGKDALMLFESMKTVGIKPD-----D-ITMVGILSACSHTGLVEKGTEYFYSMNRD-YGVIPN--SKH 545 (778)
Q Consensus 475 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-----~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~~ 545 (778)
+..+...+.+.|++++|+++|++....-...+ . ..|...+-.+...|+...|.+.|+..... .++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 34456677888888888888888776433222 1 12333333555667777888777776532 122222 222
Q ss_pred HHHHHHHHh--hcCCHHHHHHHHHhCC
Q 004024 546 YTCMVDLLG--RAGRLDEAQNLMKNMP 570 (778)
Q Consensus 546 y~~lv~~l~--r~g~~~eA~~~~~~m~ 570 (778)
...|++++- ....+++|..-++.+.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 334444442 2345666776676663
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.04 Score=56.90 Aligned_cols=143 Identities=15% Similarity=0.191 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHH-HhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSA-CSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
+|..++...-+.+..+.|..+|.+..+.+ .-+...|...... +...++.+.|..+|+...+.++- +...+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~--~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS--DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHH
Confidence 45666666666666666666666665422 1122233333332 23345566677777777765443 55667888888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 553 LGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
+.+.|+.+.|..+|++. ..-|. ..+|...+.-=..+|+.+....+.+++.+.-|++ .....+++-|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~-~~~~~f~~ry~ 151 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED-NSLELFSDRYS 151 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHhh
Confidence 88899999999998876 22232 3599999999999999999999999999998885 33444555443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.03 Score=51.71 Aligned_cols=99 Identities=21% Similarity=0.234 Sum_probs=48.6
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCchH
Q 004024 538 GVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM---PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPE--NAGMY 612 (778)
Q Consensus 538 ~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~--~~~~y 612 (778)
.+.|++.+--.|...+.+.|+..||...+++. ++.-|+...-.+..+...-++...+...++++.+-.|. .+...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 44455554445555555555555555555444 23344444444445544555555555555555554443 33444
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHH
Q 004024 613 VLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 613 ~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
.+++..|+..|+..+|..-++...
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHH
Confidence 455555555555555554444433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.66 E-value=1.7 Score=49.08 Aligned_cols=319 Identities=13% Similarity=0.123 Sum_probs=185.2
Q ss_pred hhHHHHHHHhcCChhHHHHHHhhCCCCC---hhHHHHHHHHHhcCCC---HHHHHHHHhhCCC--CCeehHHHHHHHHHh
Q 004024 219 WNSLMGGFVKQKRLGDAKWIFDRMPVRD---EVSWNTMITGYAQNNY---LAEAQRLFEEAPV--KDVFTWTAMVSGYVQ 290 (778)
Q Consensus 219 ~~~li~~~~~~g~~~~A~~~~~~m~~~d---~~~~~~li~~y~~~g~---~~~A~~~f~~m~~--~d~~~~~~li~~~~~ 290 (778)
-..+++-+...+.+..|.++-..+..|- ..++.....-+.+..+ -+-+..+=+++.. .+.++|..+..---+
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 3567788888899999999988887554 4566666666666532 2334444445554 467889888888889
Q ss_pred cCChHHHHHHHHhCCCC--------CcchHHHHHHHHhccCChHHHHHHHHhhc-cccccHHHHHHHHHHhcCChhHHHH
Q 004024 291 NGKVDEARMIFDAMPEK--------NTVSWNAMIAGYVQTKRMDMARELFEAMT-CKNVASWNTMITGYAQSGEITHARN 361 (778)
Q Consensus 291 ~g~~~~A~~l~~~m~~~--------~~~t~~~ll~~~~~~~~~~~a~~i~~~~~-~~~~~~~~~Li~~y~k~g~~~~A~~ 361 (778)
.|+.+-|..+++.=... +..-+...+.-+...|+.+...+++-++. ..+...+...+ .+...|..
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l------~~~p~a~~ 593 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL------RNQPLALS 593 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH------HhchhhhH
Confidence 99999999888654332 44456666777777888877777766655 11111111111 11222333
Q ss_pred HhhhCCC-CCeeehhhHHHHHHhcCChhHHHHHHH--HHh----hcCcccCcccccchHHHhcccccHHHHHH-------
Q 004024 362 LFDRMPQ-HDCISWAAIIAGYAQSGYSEDSLRLFI--EMK----RYGERLNRSPFTSVLSTCANLASLELGKQ------- 427 (778)
Q Consensus 362 ~f~~m~~-~d~~~~~~li~~~~~~g~~~~Al~l~~--~m~----~~g~~pd~~t~~~ll~a~~~~~~~~~a~~------- 427 (778)
++.+.-. .|.. .+-+.| +.++-.+++.-|. ... ..|..|+ ....-++|++......+.+
T Consensus 594 lY~~~~r~~~~~---~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~k 666 (829)
T KOG2280|consen 594 LYRQFMRHQDRA---TLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMK 666 (829)
T ss_pred HHHHHHHhhchh---hhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 3332211 1110 011111 1122222222211 100 0122222 2223344444333221111
Q ss_pred ---HHHHHH-HcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004024 428 ---LHGQLV-KVGFE-AGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVG 502 (778)
Q Consensus 428 ---i~~~~~-~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g 502 (778)
+...+. +.|.. .|..+.. -+.-+..-|+..+|.++-.+..-||-..|--=+.+++..+++++-.++-+.+.
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~d-Tv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk--- 742 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHD-TVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK--- 742 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHH-HHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC---
Confidence 111111 12221 2222222 23345567899999999998888888888888899999999988777766543
Q ss_pred CCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 004024 503 IKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMK 567 (778)
Q Consensus 503 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~ 567 (778)
+ ++-|.-...+|.+.|+.+||.+|+..... +.-.+++|.+.|.+.+|.++--
T Consensus 743 --s-PIGy~PFVe~c~~~~n~~EA~KYiprv~~----------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 743 --S-PIGYLPFVEACLKQGNKDEAKKYIPRVGG----------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred --C-CCCchhHHHHHHhcccHHHHhhhhhccCC----------hHHHHHHHHHhccHHHHHHHHH
Confidence 2 56677788899999999999999866531 1257888999999999887653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0048 Score=48.38 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYG-KTELAEKAAEVIFEMEP 606 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g-~~~~a~~~~~~~~~l~p 606 (778)
+...|..+...+.+.|++++|+..+++. .+.|+ +.+|..+..++...| +.+.|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566777888888888999998888776 45665 668899999999999 79999999999999998
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0024 Score=49.89 Aligned_cols=62 Identities=24% Similarity=0.340 Sum_probs=31.2
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 555 RAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 555 r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
..|++++|+++++++ ...| +..++..+..++...|+++.|+..++++...+|+++..+.+++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 345555555555544 2233 3445555555555555555555555555555555544444443
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.55 E-value=1.4 Score=46.83 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=70.6
Q ss_pred HhcCC-HHHHHHHHHhccC---CChhHHHHHH----HHHHHc---CChHHHHHHHHHHHHCCCCCChhHH----HHHHH-
Q 004024 452 CKCGS-VEEAYHAFEEIVD---KDVISWNTMI----AGYARH---GFGKDALMLFESMKTVGIKPDDITM----VGILS- 515 (778)
Q Consensus 452 ~k~g~-~~~A~~~f~~m~~---~d~~~~~~li----~~~~~~---g~~~~Al~l~~~m~~~g~~pd~~t~----~~ll~- 515 (778)
-+.|. -+.|.++++.+.+ -|...-|... .+|.+. ....+-+.+-+-..+.|+.|-.+.= +.+-.
T Consensus 390 W~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 34444 6677777776644 3444444332 223221 1233444444445566777644332 22222
Q ss_pred -HHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 004024 516 -ACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGA 580 (778)
Q Consensus 516 -a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ 580 (778)
-+-..|++.++.-+-.-+. .+.|++.+|..+.-.+....+++||.+.+.+.| |+..+|++
T Consensus 470 EyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 2345577776655443333 577888888888877788888888888888876 46666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.021 Score=54.51 Aligned_cols=98 Identities=16% Similarity=0.271 Sum_probs=74.2
Q ss_pred HHHHHhc--cCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc-------------
Q 004024 461 YHAFEEI--VDKDVISWNTMIAGYARH-----GFGKDALMLFESMKTVGIKPDDITMVGILSACSHT------------- 520 (778)
Q Consensus 461 ~~~f~~m--~~~d~~~~~~li~~~~~~-----g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~------------- 520 (778)
...|+.. ..+|-.+|..+|..|.++ |+.+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 446777777777777643 66677777788888888888888888888766432
Q ss_pred ---CcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCH
Q 004024 521 ---GLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRL 559 (778)
Q Consensus 521 ---g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 559 (778)
.+.+-|+++++.|.. +|+.||.+++..+++.+|+.+..
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 345678999999975 59999999999999999988764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.027 Score=60.59 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=86.4
Q ss_pred CcccCcccccchHHHhcccccHHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC----CChhH
Q 004024 401 GERLNRSPFTSVLSTCANLASLELGKQLHGQLVKV--GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD----KDVIS 474 (778)
Q Consensus 401 g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----~d~~~ 474 (778)
+.+...+.+..+++.|....+++.+..+.-..... ....-..+..++|..|.+.|..+.|..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34455566666777777777777777776666554 2223344445788888888888888888776443 78888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc
Q 004024 475 WNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHT 520 (778)
Q Consensus 475 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 520 (778)
+|.|+..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777777778877777777655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.051 Score=60.93 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHhc--CCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 591 TELAEKAAEVIFEM--EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 591 ~~~a~~~~~~~~~l--~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
.+.+.+.+++..++ +|.++..|..++-++...|++++|...+++..+..
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 34566666666664 77788889999999999999999999999887765
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.25 Score=52.15 Aligned_cols=159 Identities=22% Similarity=0.194 Sum_probs=101.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC---Chh----HHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 004024 447 LLVMYCKCGSVEEAYHAFEEIVDK---DVI----SWNTMIAGYAR---HGFGKDALMLFESMKTVGIKPDDITMVGILSA 516 (778)
Q Consensus 447 Li~~y~k~g~~~~A~~~f~~m~~~---d~~----~~~~li~~~~~---~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a 516 (778)
|+-.|-...+++.-.++.+.+... ++. .--...-++.+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 444588888888888888888652 211 11122334445 78889999999886666667777777666665
Q ss_pred Hh---------ccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHH----HHHHH---Hh----C-CCCC--
Q 004024 517 CS---------HTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDE----AQNLM---KN----M-PFEP-- 573 (778)
Q Consensus 517 ~~---------~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~e----A~~~~---~~----m-~~~p-- 573 (778)
|- .....++|...|.+. |.+.|+..+--.++-++..+|...+ ..++- .. - ...+
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 42 123466777776643 4666665444444555555554222 22221 11 1 1223
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 574 DAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 574 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
|-..+.+++.++...||.+.|.+++++++.+.|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 44455799999999999999999999999998765
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0079 Score=49.36 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=49.0
Q ss_pred cCChHHHHHHHHHHHHCCC-CCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHH
Q 004024 485 HGFGKDALMLFESMKTVGI-KPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEA 562 (778)
Q Consensus 485 ~g~~~~Al~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA 562 (778)
.|++++|+.+|+++.+..- .|+...+..+..++.+.|++++|.++++. . ...|+ ....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5778888888888887322 11334444567777788888888888776 2 22232 23333446677777777777
Q ss_pred HHHHHh
Q 004024 563 QNLMKN 568 (778)
Q Consensus 563 ~~~~~~ 568 (778)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.58 Score=48.55 Aligned_cols=247 Identities=15% Similarity=0.148 Sum_probs=150.9
Q ss_pred hhhHHHHHHhc--CChhHHHHHHHHHhhcCcccCcccccchHHHhc--ccccHHHHHHHHHHHHHcCCCCchhHH--HHH
Q 004024 374 WAAIIAGYAQS--GYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCA--NLASLELGKQLHGQLVKVGFEAGCFVG--NAL 447 (778)
Q Consensus 374 ~~~li~~~~~~--g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~--~~~~~~~a~~i~~~~~~~g~~~~~~~~--~~L 447 (778)
|.+|-.|+... |+...|-++-.+-.+ -+..|...+.-+|.+-+ -.|+.+.+++-|+.|... |..... ..|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 44444444433 444444444333321 13345555555555543 246777777777776642 222211 223
Q ss_pred HHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhH--HHHHHHHHhcc-
Q 004024 448 LVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDALMLFESMKTVG-IKPDDIT--MVGILSACSHT- 520 (778)
Q Consensus 448 i~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~pd~~t--~~~ll~a~~~~- 520 (778)
.----+.|..+.|+..-+..-. | =.-.|.+.+...+..|+++.|+++.+.-.+.. +.||..- -..||.+-..+
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 3333567888888888777644 3 24578889999999999999999998776543 4565432 22344332211
Q ss_pred --CcHHHHHHHHHHchhhcCCCCChHHHHHH-HHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHH-H
Q 004024 521 --GLVEKGTEYFYSMNRDYGVIPNSKHYTCM-VDLLGRAGRLDEAQNLMKNM-PFEPDAATWGALLGACRLYGKTELA-E 595 (778)
Q Consensus 521 --g~~~~a~~~~~~m~~~~~~~p~~~~y~~l-v~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll~a~~~~g~~~~a-~ 595 (778)
.+...|...-.+ ...+.|+..--..+ ..+|.+.|++.++-.+++.+ ..+|.+.+|.....+ +.||..+. .
T Consensus 241 ldadp~~Ar~~A~~---a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~a--r~gdta~dRl 315 (531)
T COG3898 241 LDADPASARDDALE---ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRA--RSGDTALDRL 315 (531)
T ss_pred hcCChHHHHHHHHH---HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHh--cCCCcHHHHH
Confidence 223344433322 23566765443333 47889999999999999998 668888888655543 56665333 3
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHH
Q 004024 596 KAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVS 629 (778)
Q Consensus 596 ~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~ 629 (778)
+-++++.++.|+|......++..-...|++..|.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~AR 349 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence 4456778899999988888888777777776554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.39 Score=49.68 Aligned_cols=116 Identities=22% Similarity=0.214 Sum_probs=63.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc-CcHHHHHHHHHHchhhcCCCCC----hHHHHHHHHH
Q 004024 478 MIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHT-GLVEKGTEYFYSMNRDYGVIPN----SKHYTCMVDL 552 (778)
Q Consensus 478 li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~ 552 (778)
.+..|...|++..|-+++.++-+ .|-.. |++++|.++|.....-|..... ...+.-+.++
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 34555555655555555544332 33344 5666666666655443322221 3445567788
Q ss_pred HhhcCCHHHHHHHHHhCC---CC-----CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 553 LGRAGRLDEAQNLMKNMP---FE-----PDAA-TWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m~---~~-----p~~~-~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
+.+.|++++|.+++++.. .+ .+.. .+-..+-.+...||...|.+.+++..+.+|.-
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 888889999988887751 11 1111 12122223445688999999999998888864
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.7 Score=49.34 Aligned_cols=72 Identities=13% Similarity=0.058 Sum_probs=38.5
Q ss_pred HHHhcCChhHHHHHHhhCCCC-----ChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHH
Q 004024 225 GFVKQKRLGDAKWIFDRMPVR-----DEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDE 296 (778)
Q Consensus 225 ~~~~~g~~~~A~~~~~~m~~~-----d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~ 296 (778)
.+.+.+.+++|..+-+..... -..++-..|+.+.-.|++++|-.+.-.|...+..-|.--+.-++..++...
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 344444455555444433311 123455566666666666666666666666566666666666655555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.075 Score=46.66 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=66.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHh
Q 004024 478 MIAGYARHGFGKDALMLFESMKTVGIKPD--DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLG 554 (778)
Q Consensus 478 li~~~~~~g~~~~Al~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~ 554 (778)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+|+.....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45677788999999999999999887665 34677888889999999999999998876543211 1222223445677
Q ss_pred hcCCHHHHHHHHHh
Q 004024 555 RAGRLDEAQNLMKN 568 (778)
Q Consensus 555 r~g~~~eA~~~~~~ 568 (778)
..|+.+||.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88899888887643
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0063 Score=42.80 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
.+|..|..++...|+++.|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999988887764
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.047 Score=49.81 Aligned_cols=91 Identities=11% Similarity=0.014 Sum_probs=68.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccC
Q 004024 446 ALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTG 521 (778)
Q Consensus 446 ~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g 521 (778)
++..-+...|++++|.++|+-+.. .+..-|-.|...+-..|++++|++.|..... +.|| ..++-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcC
Confidence 344455677888888888887644 3566788888888888888999998888888 5564 456777777788888
Q ss_pred cHHHHHHHHHHchhhcC
Q 004024 522 LVEKGTEYFYSMNRDYG 538 (778)
Q Consensus 522 ~~~~a~~~~~~m~~~~~ 538 (778)
+.+.|.+.|+......+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 88888888887765433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.052 Score=46.03 Aligned_cols=79 Identities=15% Similarity=0.134 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCChhHHHHHHHHHhccC--------cHHHHHHHHHHchhhcCCCCChHHH
Q 004024 476 NTMIAGYARHGFGKDALMLFESMKTVGI-KPDDITMVGILSACSHTG--------LVEKGTEYFYSMNRDYGVIPNSKHY 546 (778)
Q Consensus 476 ~~li~~~~~~g~~~~Al~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~y 546 (778)
...|..+...|++...-.+|+.+++.|+ .|...+|+.+|.+-.+.. .+-+.+.+++.|... +++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 4456666667999999999999999999 899999999998776543 244566777788765 788888888
Q ss_pred HHHHHHHhh
Q 004024 547 TCMVDLLGR 555 (778)
Q Consensus 547 ~~lv~~l~r 555 (778)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888876643
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.57 Score=43.58 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=94.4
Q ss_pred CCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC-CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHH
Q 004024 503 IKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVI-PNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD---AAT 577 (778)
Q Consensus 503 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---~~~ 577 (778)
+.|+...-..+..+....|+..||...|.+... |+- -|....-.+..+....|++.+|...+++. ...|+ +..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 567666667777888888888888888887765 443 35555556666677778888888888776 22222 223
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 578 WGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 578 ~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
--.+...+...|..+.|+..++.++.--|.- ..-...+.+++++|+.+++..-....-
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3445577888999999999999999988764 556677888999999998876554443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.064 Score=57.78 Aligned_cols=120 Identities=9% Similarity=0.034 Sum_probs=94.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-C-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhH
Q 004024 436 GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-K-----DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDIT 509 (778)
Q Consensus 436 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-~-----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t 509 (778)
+.+.+......+++......+++++..++-+... | -..|..++|..|..+|..++++++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3344555556677777777778888888877643 2 123556999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhc
Q 004024 510 MVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRA 556 (778)
Q Consensus 510 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~ 556 (778)
|+.++..+.+.|++..|.++...|... +.-.+..++...+..+.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 999999999999999999999888654 5555666666555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.048 Score=47.86 Aligned_cols=84 Identities=23% Similarity=0.154 Sum_probs=62.1
Q ss_pred HHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CCchHHHHHHHhhh
Q 004024 550 VDLLGRAGRLDEAQNLMKNM---PFEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPE---NAGMYVLLSNLYAA 621 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m---~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~---~~~~y~~L~~~y~~ 621 (778)
..++-..|+.++|+.++++. +.... ...+-.+.++++..|++++|..++++.++-.|+ +....+.++-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455667777887777765 22221 335667778888889999999999988887777 66677788888888
Q ss_pred cCCcchHHHHHH
Q 004024 622 SGRWGDVSKVRL 633 (778)
Q Consensus 622 ~g~~~~a~~~~~ 633 (778)
.|++++|.+..-
T Consensus 88 ~gr~~eAl~~~l 99 (120)
T PF12688_consen 88 LGRPKEALEWLL 99 (120)
T ss_pred CCCHHHHHHHHH
Confidence 999999888754
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.052 Score=51.91 Aligned_cols=102 Identities=22% Similarity=0.191 Sum_probs=70.9
Q ss_pred ccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 418 NLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFES 497 (778)
Q Consensus 418 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~ 497 (778)
+.|.++-.......|.+.|+..|..+|+.|++.+=| |.+- -..+|+.+ ..- ...+-+-|++++++
T Consensus 64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-----------F~h--yp~Qq~c~i~lL~q 128 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-----------FMH--YPRQQECAIDLLEQ 128 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------hcc--CcHHHHHHHHHHHH
Confidence 346677777778888899999999999999988765 3322 11222211 111 12345779999999
Q ss_pred HHHCCCCCChhHHHHHHHHHhccCcH-HHHHHHHHHch
Q 004024 498 MKTVGIKPDDITMVGILSACSHTGLV-EKGTEYFYSMN 534 (778)
Q Consensus 498 m~~~g~~pd~~t~~~ll~a~~~~g~~-~~a~~~~~~m~ 534 (778)
|...|+.||..|+..++..+.+.+.. .+.++...-|-
T Consensus 129 ME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 129 MENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 99999999999999999999877653 33334433343
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.38 Score=48.38 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=45.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 583 GACRLYGKTELAEKAAEVIFEMEPENA---GMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 583 ~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.-|.+.|++.-|..-++.+++--|+.+ .+...+.+.|...|..++|.++.+.+..
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 446778899999999999999877754 4667888999999999999998876653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.36 Score=52.96 Aligned_cols=262 Identities=16% Similarity=0.182 Sum_probs=134.7
Q ss_pred ehHHHHHHHHHhcCChHHHHHHHHhCCCC-----------CcchHHHHHHHHhccCChHHHHHHHHhhc-cccccHH--H
Q 004024 279 FTWTAMVSGYVQNGKVDEARMIFDAMPEK-----------NTVSWNAMIAGYVQTKRMDMARELFEAMT-CKNVASW--N 344 (778)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----------~~~t~~~ll~~~~~~~~~~~a~~i~~~~~-~~~~~~~--~ 344 (778)
+.+.+=+--|...|.+++|.++-.--... +.-.++..=++|.+..++..-+-+.+.-. ..+..+- -
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i 636 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL 636 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence 34555556677788888876542211110 22334444445555544433222211111 1111111 1
Q ss_pred HHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHH
Q 004024 345 TMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLEL 424 (778)
Q Consensus 345 ~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 424 (778)
.+.+.++-.|.+.+|-++|.+ +|....|+++|..|+.-+ ...-+...|..++
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMFD----------~aQE~~~~g~~~e 688 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMFD----------YAQEFLGSGDPKE 688 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHHH----------HHHHHhhcCChHH
Confidence 234556667778888777754 456667777777665321 1111222333333
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 004024 425 GKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIK 504 (778)
Q Consensus 425 a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~ 504 (778)
-+.+.+.-... ..++.--.+-..|+...|+.++|..+ ++.+|-.+-++++-+++-.
T Consensus 689 KKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~---- 744 (1081)
T KOG1538|consen 689 KKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDK---- 744 (1081)
T ss_pred HHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcch----
Confidence 33222211110 00111112234455566666666444 3445555556665555433
Q ss_pred CChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHH-HHHHH-
Q 004024 505 PDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMP-FEPDAA-TWGAL- 581 (778)
Q Consensus 505 pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~-~~~~L- 581 (778)
.+..+...+..-+-+...+.-|-++|.+|-. ...++++....|+|+||..+-++.| +.||+. -|...
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWL 814 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHh
Confidence 2333444444455556666778888887743 3468899999999999999999986 556643 22222
Q ss_pred ---------HHHHHHcCChHHHHHHHHHHH
Q 004024 582 ---------LGACRLYGKTELAEKAAEVIF 602 (778)
Q Consensus 582 ---------l~a~~~~g~~~~a~~~~~~~~ 602 (778)
-.|+.+.|...+|.++++++.
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 245556666666666666554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.02 Score=61.00 Aligned_cols=64 Identities=14% Similarity=-0.050 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch---HHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 575 AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGM---YVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 575 ~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~---y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
...|..+..++...|++++|...++++++++|++..+ |..++.+|+..|+.++|.+.+++..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5677888888888888888888888888888887643 778888888888888888777666553
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.022 Score=45.13 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=53.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
.+|.+.+++++|.+.++.+ ...|+ +..|......+...|+++.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4678889999999999887 45565 66788888889999999999999999999999886655443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.039 Score=56.01 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHH
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENA---GMYVL 614 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~y~~ 614 (778)
...|..-++++.+.|++++|...|+.. ...|+ +.++--|..++...|+++.|...|+++++..|+++ .++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 345666667766778888888877766 22333 23556677778888899999999999888877754 45556
Q ss_pred HHHHhhhcCCcchHHHHHHHHHh
Q 004024 615 LSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 615 L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++.+|...|++++|.++++...+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 68888888999999888887665
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.88 E-value=2.8 Score=43.91 Aligned_cols=104 Identities=14% Similarity=0.189 Sum_probs=61.0
Q ss_pred HHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhccCChHHHHHHHH
Q 004024 254 ITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFE 333 (778)
Q Consensus 254 i~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~ 333 (778)
|.-+...|....|.++-.+...||..-|-..|.+|++.++|++-..+... +..+.-|-..+.+|.+.|+..+|..+..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~ 261 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIP 261 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHH
Confidence 44444556666666666666656666666666666666666655554332 3355666666666666666666665554
Q ss_pred hhccccccHHHHHHHHHHhcCChhHHHHHhhh
Q 004024 334 AMTCKNVASWNTMITGYAQSGEITHARNLFDR 365 (778)
Q Consensus 334 ~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 365 (778)
.+ .+..-+.+|.++|++.+|.+.--+
T Consensus 262 k~------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 262 KI------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred hC------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 42 224556677777777777665433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.073 Score=55.56 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=85.2
Q ss_pred HHHhhcCCHHHHHHHHHhC--------CCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 004024 551 DLLGRAGRLDEAQNLMKNM--------PFEP---------DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYV 613 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m--------~~~p---------~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~ 613 (778)
+.|.+.|++..|...+++. +..+ -..++..|...+.+.+++..|.+..++.++++|+|..++.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 3455666666666655442 1111 1335666777778889999999999999999999999999
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 004024 614 LLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQ 684 (778)
Q Consensus 614 ~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~ 684 (778)
.-+.+|...|.++.|...++++.+ ..|..++|...|..+.+++++
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k--------------------------~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALK--------------------------LEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999998886 356778888888888888775
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=2.1 Score=41.53 Aligned_cols=194 Identities=23% Similarity=0.192 Sum_probs=141.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHH
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGIL 514 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll 514 (778)
...........+...+.+..+...+..... .....+..+...+...+...++++.+.........+. .......
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 136 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLA 136 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHH
Confidence 356667777888888888888888877642 3455666777777888888999999998887433331 2222222
Q ss_pred H-HHhccCcHHHHHHHHHHchhhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHH
Q 004024 515 S-ACSHTGLVEKGTEYFYSMNRDYGVIP----NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD--AATWGALLGACR 586 (778)
Q Consensus 515 ~-a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~--~~~~~~Ll~a~~ 586 (778)
. ++...|..+++...|..... ..| ....+......+...|+.++|...+.+. ...|+ ...+..+...+.
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 137 LGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH
Confidence 3 78889999999999988743 333 3344444445567788999999888776 33344 567888888888
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 587 LYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 587 ~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..++.+.+...+....+..|.....+..++..+...|.++++.........
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 889999999999999999998666777888888777778888877766554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.11 Score=47.67 Aligned_cols=61 Identities=25% Similarity=0.263 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 577 TWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 577 ~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+...++..+...|+++.+...+++++..+|.+-..|..|..+|...|+..+|.++++.++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566777788899999999999999999999999999999999999999999999888753
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.56 E-value=4 Score=43.37 Aligned_cols=87 Identities=17% Similarity=0.267 Sum_probs=65.2
Q ss_pred HHHhhCC--CCCcchHHHHHHHHHcCCChhHHHHHHhhCCCCCc---chHHHHHHHHHcCCChHHHHHHHHhcc--cCCc
Q 004024 113 QVFDQMP--QRDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDV---VSWNTMLSGYAQNGYADAARRIFDRML--EKNE 185 (778)
Q Consensus 113 ~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~---~~~~~li~~~~~~g~~~~A~~~~~~m~--~~d~ 185 (778)
++=+++. +.|..+|-.||.-|...|..++.++++++|..|-+ .+|.--+++-....+++....+|.+.+ .-+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 4455555 34778999999999999999999999999987765 367777877777788888888888876 3356
Q ss_pred chHHHHHHHHHhcC
Q 004024 186 ISWNGLLAAYVQNG 199 (778)
Q Consensus 186 ~t~~~ll~~~~~~g 199 (778)
..|...+.--.+..
T Consensus 110 dLW~lYl~YIRr~n 123 (660)
T COG5107 110 DLWMLYLEYIRRVN 123 (660)
T ss_pred hHHHHHHHHHHhhC
Confidence 66666665444433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.89 Score=45.73 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=27.9
Q ss_pred HHHHhcCChhHHHHHhhhCCCCCeee------hhhHHHHHHhcCChhHHHHHHHHHhhc
Q 004024 348 TGYAQSGEITHARNLFDRMPQHDCIS------WAAIIAGYAQSGYSEDSLRLFIEMKRY 400 (778)
Q Consensus 348 ~~y~k~g~~~~A~~~f~~m~~~d~~~------~~~li~~~~~~g~~~~Al~l~~~m~~~ 400 (778)
..+.+.|++++|.+.|+.+....+.+ .-.++.+|.+.+++++|...|++..+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33445566666666666654322211 112344556666666666666666553
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.063 Score=45.54 Aligned_cols=80 Identities=15% Similarity=0.022 Sum_probs=64.5
Q ss_pred hhhHHHHHHhcCChhHHHHHHHHHhhcCc-ccCcccccchHHHhcccc--------cHHHHHHHHHHHHHcCCCCchhHH
Q 004024 374 WAAIIAGYAQSGYSEDSLRLFIEMKRYGE-RLNRSPFTSVLSTCANLA--------SLELGKQLHGQLVKVGFEAGCFVG 444 (778)
Q Consensus 374 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~--------~~~~a~~i~~~~~~~g~~~~~~~~ 444 (778)
-...|..+...+++.....+|+.+.+.|+ .|+..+|+.+|.+.++.. .+-....+++.++..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34567777777999999999999999999 899999999998876532 355667788888888888888888
Q ss_pred HHHHHHHHh
Q 004024 445 NALLVMYCK 453 (778)
Q Consensus 445 ~~Li~~y~k 453 (778)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888876654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.099 Score=45.36 Aligned_cols=89 Identities=24% Similarity=0.238 Sum_probs=74.6
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC----chHHHHHHHhhhcCCc
Q 004024 552 LLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENA----GMYVLLSNLYAASGRW 625 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~----~~y~~L~~~y~~~g~~ 625 (778)
+++.+|++++|++.|.+. .+-| .+..||.-..+++.+|+.+.|..-+++++++.-+.. ..|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567889999999998776 3344 578899999999999999999999999999864332 3688999999999999
Q ss_pred chHHHHHHHHHhCCC
Q 004024 626 GDVSKVRLKMRDRGV 640 (778)
Q Consensus 626 ~~a~~~~~~m~~~g~ 640 (778)
++|..-|+...+-|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999998887664
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.44 E-value=6.2 Score=44.78 Aligned_cols=320 Identities=13% Similarity=0.159 Sum_probs=175.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCC---cchHHHHHHHHhccC---ChHHHHHHHHhhcc--ccccHHHHHHHHHHh
Q 004024 281 WTAMVSGYVQNGKVDEARMIFDAMPEKN---TVSWNAMIAGYVQTK---RMDMARELFEAMTC--KNVASWNTMITGYAQ 352 (778)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~l~~~m~~~~---~~t~~~ll~~~~~~~---~~~~a~~i~~~~~~--~~~~~~~~Li~~y~k 352 (778)
-..+|+-++..+.+..|+++-..+..|. ...|.....-+.+.. +.+.+..+-+++.. .....|.....---.
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 4456777777788888888887777663 445555554444442 22333333333332 334456666666667
Q ss_pred cCChhHHHHHhhhCCCC--------CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHH
Q 004024 353 SGEITHARNLFDRMPQH--------DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLEL 424 (778)
Q Consensus 353 ~g~~~~A~~~f~~m~~~--------d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 424 (778)
+|+.+-|..+.+.=+.. +.--+..-+.-..+.|+.+-...++..|...- +...|.- -+.....
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~------~l~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFM------TLRNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHH------HHHhchh
Confidence 77777777776643321 11123334444555566665555555554321 0000000 0111222
Q ss_pred HHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHH--Hhc-----cCCChhHHHHHHHHHHHcCC---hHH---
Q 004024 425 GKQLHGQLVKV-GFEAGCFVGNALLVMYCKCGSVEEAYHAF--EEI-----VDKDVISWNTMIAGYARHGF---GKD--- 490 (778)
Q Consensus 425 a~~i~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f--~~m-----~~~d~~~~~~li~~~~~~g~---~~~--- 490 (778)
|..++.+..+. +- ..|-+.|-...+. .+...| +.. .+.-.........++++... ..+
T Consensus 591 a~~lY~~~~r~~~~-------~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDR-------ATLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred hhHHHHHHHHhhch-------hhhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 33333333221 10 0112222222222 121111 110 01111112223334443322 122
Q ss_pred ----HHHHHHHHHH-CCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 004024 491 ----ALMLFESMKT-VGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNL 565 (778)
Q Consensus 491 ----Al~l~~~m~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~ 565 (778)
-+++++.+.. .|..-...|..-.+.-+.+.|+..+|.++-... . .||-..|-.=+.+|+..++|++-+++
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 2223333322 234455667777788899999999998876554 3 37888888888999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHH
Q 004024 566 MKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 566 ~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
-+++. .+.-|.-...+|.+.||.++|.+.+-+.-.+ .-...+|...|+..+|.+.--
T Consensus 738 Akskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 738 AKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence 88873 2455677789999999999999887665332 256788999999999987643
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.43 E-value=3.3 Score=43.59 Aligned_cols=163 Identities=15% Similarity=0.154 Sum_probs=89.7
Q ss_pred HHHHhcCCHHHHHHHHHhccC--C-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhcc
Q 004024 449 VMYCKCGSVEEAYHAFEEIVD--K-----DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI-TMVGILSACSHT 520 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~--~-----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~ 520 (778)
+...|.|++..|.+.+.+... | +...|-.......+.|+.++|+.--++... +.|..+ .+..-..++.-.
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHH
Confidence 556788999999999988754 2 334455556667788999999988887765 444322 222222344556
Q ss_pred CcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 521 GLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEV 600 (778)
Q Consensus 521 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 600 (778)
+.+++|.+.|+...+. .-+.++-.. +.+|..-+++.. -.-|-.+++.-+...+.+......+.
T Consensus 335 e~~e~AV~d~~~a~q~---~~s~e~r~~----------l~~A~~aLkkSk----Rkd~ykilGi~~~as~~eikkayrk~ 397 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL---EKDCEIRRT----------LREAQLALKKSK----RKDWYKILGISRNASDDEIKKAYRKL 397 (486)
T ss_pred HHHHHHHHHHHHHHhh---ccccchHHH----------HHHHHHHHHHhh----hhhHHHHhhhhhhcccchhhhHHHHH
Confidence 7888888888876543 112222211 223333333221 11244444444555555555555555
Q ss_pred HHhcCCCCC-ch-------HHHHHHHhhhcCCcchHHH
Q 004024 601 IFEMEPENA-GM-------YVLLSNLYAASGRWGDVSK 630 (778)
Q Consensus 601 ~~~l~p~~~-~~-------y~~L~~~y~~~g~~~~a~~ 630 (778)
.+...|+-. +. +-..++.|.-.++.++..+
T Consensus 398 AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 398 ALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred HHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 555555521 11 3344555555555554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.2 Score=47.93 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=42.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDV----ISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~----~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
+.+...++.+...|.+.|++++|...|++..+ |+. .+|..+..+|+..|+.++|++.+++..+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666677777777777777777776543 432 2477777777777777777777777766
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.33 Score=49.34 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=55.4
Q ss_pred cCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChHH
Q 004024 520 TGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD-AATWGALLGACRLYGKTEL 593 (778)
Q Consensus 520 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~-~~~~~~Ll~a~~~~g~~~~ 593 (778)
.|++++|...|+.+.+.|.-.+ ....+-.+..+|...|++++|...|+.+ |..|. +..|-.+...+...|+.+.
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 3455555555555544432221 1223445666666777777777766665 32222 3355555666778899999
Q ss_pred HHHHHHHHHhcCCCCCc
Q 004024 594 AEKAAEVIFEMEPENAG 610 (778)
Q Consensus 594 a~~~~~~~~~l~p~~~~ 610 (778)
|...++++++..|++..
T Consensus 236 A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 236 AKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHCcCCHH
Confidence 99999999999988743
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.21 E-value=6.4 Score=43.63 Aligned_cols=184 Identities=13% Similarity=0.079 Sum_probs=126.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEIVDK---DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILS 515 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~ 515 (778)
.+..+|..-++.-.+.|+.+.+.-.|+....| =..-|--.+.-....|+.+-|-.+...-.+--++-.+.+-..--.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35667888888888999999999999988664 223455544444445888888777776655433334443333334
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCCh-HHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH-----HHH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIPNS-KHYTCMVDLLGRAGRLDEAQ---NLMKNM-PFEPDAATWGALL-----GAC 585 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~---~~~~~m-~~~p~~~~~~~Ll-----~a~ 585 (778)
-+-+.|+.+.|..+++....++ |+. +.-.--+...-|.|..+.+. +++... +.+-+..+...+. --+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 4677899999999999998764 543 22223456677889999888 555544 3333333333332 123
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCc
Q 004024 586 RLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRW 625 (778)
Q Consensus 586 ~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~ 625 (778)
...++.+.|..++.++.+..|.+...|..+.++....+-.
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 4568999999999999999999999999999987777633
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.18 Score=44.73 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=34.2
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHc
Q 004024 538 GVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPDAATWGALLGACRLY 588 (778)
Q Consensus 538 ~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~Ll~a~~~~ 588 (778)
.+.|+.....+++.+|+..|++..|+++++.. |++-+..+|..|+.=+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 45567777777777777777777777776544 5555577777777554443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.3 Score=43.51 Aligned_cols=187 Identities=14% Similarity=0.073 Sum_probs=115.2
Q ss_pred HHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChh--------HHHHHHHHHHHcCChHHHHHH
Q 004024 426 KQLHGQLVK-VGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDVI--------SWNTMIAGYARHGFGKDALML 494 (778)
Q Consensus 426 ~~i~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~--------~~~~li~~~~~~g~~~~Al~l 494 (778)
+.+|..+.+ .|.+ +++|+..|.-..-+++-...|+.-.. ..+. .-+.++..+.-+|.+.-.+.+
T Consensus 125 R~lhAe~~~~lgnp-----qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~ 199 (366)
T KOG2796|consen 125 RILHAELQQYLGNP-----QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDA 199 (366)
T ss_pred HHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHH
Confidence 455555543 2332 34566666555555555555554332 2222 335666666777888888999
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcC----CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 004024 495 FESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYG----VIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMP 570 (778)
Q Consensus 495 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~ 570 (778)
+++.++..-+-+.+-...+.+.-.+.|+++.+..+|+...+..+ +.-+.-..-.+..+|.-++++.+|...+.+.+
T Consensus 200 ~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 200 YHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEIL 279 (366)
T ss_pred HHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcc
Confidence 99999865455677778888888999999999999997665422 22222222333345556778888888888775
Q ss_pred C-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 571 F-EPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 571 ~-~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
. .|. +..-|+-.-..--.|+...|.+..+.+.+..|.....-..+.|
T Consensus 280 ~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 280 RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFN 328 (366)
T ss_pred ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence 3 232 3333333223334578888888888888888875444333333
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.04 E-value=1 Score=40.85 Aligned_cols=120 Identities=15% Similarity=0.237 Sum_probs=68.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcH
Q 004024 447 LLVMYCKCGSVEEAYHAFEEIVDK---DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLV 523 (778)
Q Consensus 447 Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 523 (778)
+|..+.+.|........++.+... +....|.+|..|++.+ .++.++.++. .++......++..|...+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 444455555555555555554332 3445556666666543 3344444442 23445555677777777777
Q ss_pred HHHHHHHHHchhhcCCCCChHHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004024 524 EKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRA-GRLDEAQNLMKNMPFEPDAATWGALLGACR 586 (778)
Q Consensus 524 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~-g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~ 586 (778)
+++..++..+.. |...++.+... ++.+.|.+++.+- .++..|..++..|.
T Consensus 86 ~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 777777766532 33344444444 7778888877763 25567777776654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.79 Score=40.13 Aligned_cols=139 Identities=14% Similarity=0.113 Sum_probs=77.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 004024 484 RHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQ 563 (778)
Q Consensus 484 ~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 563 (778)
..|..++..++..+.... .+..-++.++.--..+-+-+-..+.++++-+.|.+.| +|++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~--------------C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK--------------CGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG---------------S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh--------------hcchHHHH
Confidence 346666777777666542 1233344444433333333444455555544443333 34444433
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCc
Q 004024 564 NLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVK 641 (778)
Q Consensus 564 ~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~ 641 (778)
.-+-.+. .+....+--|.+....|.-+.-.+++..+..-+..+|...+-++++|.+.|...++.++++..-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3333332 122233445677778888898899999888766677889999999999999999999999999999985
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.042 Score=44.20 Aligned_cols=59 Identities=24% Similarity=0.249 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNM-------P-FEPD-AATWGALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m-------~-~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
.|+.+...|.+.|++++|++.+++. + -.|+ ..++..+...+...|+.+.|+..+++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555555544433 1 1122 33445555555555555555555555544
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.44 Score=52.33 Aligned_cols=225 Identities=12% Similarity=0.121 Sum_probs=114.4
Q ss_pred HHHHHHHHHhCCCchHHHHH--HhhCCC----CCcchHHHHHHHHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCC
Q 004024 95 YNAMISGYLLNGQLDPARQV--FDQMPQ----RDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNG 168 (778)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~--f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 168 (778)
++.-=.+|.+-+++.--+-+ ++++.+ |+.. .+...++-.|.+.+|-++|.+--..+ -.+.+|....
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~en-----RAlEmyTDlR 672 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRSGHEN-----RALEMYTDLR 672 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHcCchh-----hHHHHHHHHH
Confidence 44445666666555433222 233332 3332 22334566678888888887654332 2344455444
Q ss_pred ChHHHHHHHHhcc--------------cCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhH
Q 004024 169 YADAARRIFDRML--------------EKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGD 234 (778)
Q Consensus 169 ~~~~A~~~~~~m~--------------~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 234 (778)
.++.|.++...-. ..|+.---+....+...|+.++|..+. ...|-.+-
T Consensus 673 MFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~ 734 (1081)
T KOG1538|consen 673 MFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDM 734 (1081)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHH
Confidence 5555554443221 011111112223334445555554432 23333444
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHH
Q 004024 235 AKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNA 314 (778)
Q Consensus 235 A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ 314 (778)
+.++-.++...+..+.-.+..-+-+...+.-|-++|.+|.. ..++++.....+++.+|..+-++..+--...|.-
T Consensus 735 lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-----~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~p 809 (1081)
T KOG1538|consen 735 LIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-----LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMP 809 (1081)
T ss_pred HHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc-----HHHHhhheeecccchHhHhhhhhCccccccccch
Confidence 44444444433444444444444455556666666666653 2344556666677777777766666543334444
Q ss_pred HHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCC
Q 004024 315 MIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQ 368 (778)
Q Consensus 315 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 368 (778)
-.+-++...++++|.+. |.|.|+-.+|.++++++..
T Consensus 810 yaqwLAE~DrFeEAqkA------------------fhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 810 YAQWLAENDRFEEAQKA------------------FHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHhhhhhhHHHHHHH------------------HHHhcchHHHHHHHHHhhh
Confidence 55566666666666653 3466777777777777654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.76 Score=49.45 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHH-CCCCCChhHHHHHHHHHhc----------cCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhh
Q 004024 488 GKDALMLFESMKT-VGIKPDDITMVGILSACSH----------TGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGR 555 (778)
Q Consensus 488 ~~~Al~l~~~m~~-~g~~pd~~t~~~ll~a~~~----------~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r 555 (778)
.+.|+.+|.+... +.+.|+...-...+.-|-. .....+|.+.-.... .+.| |......+..+++-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHh
Confidence 4677888888771 2267765433333332211 223445555555444 3344 45556666666777
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH--HHHHHhhhcCCcchHHHH
Q 004024 556 AGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYV--LLSNLYAASGRWGDVSKV 631 (778)
Q Consensus 556 ~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~--~L~~~y~~~g~~~~a~~~ 631 (778)
.|+++.|..+|++. .+.|| +.+|......+...|+.+.|.+.+++.++++|.-.++-+ +..++|...+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 77788888888877 56776 557777777778889999999999999999987655443 4444566655 5566655
Q ss_pred H
Q 004024 632 R 632 (778)
Q Consensus 632 ~ 632 (778)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 4
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.17 Score=52.48 Aligned_cols=127 Identities=12% Similarity=0.017 Sum_probs=89.1
Q ss_pred cccchHHHhcccccHHHHHHHHHHHHH----cCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcc-------CC--Chh
Q 004024 408 PFTSVLSTCANLASLELGKQLHGQLVK----VGFE-AGCFVGNALLVMYCKCGSVEEAYHAFEEIV-------DK--DVI 473 (778)
Q Consensus 408 t~~~ll~a~~~~~~~~~a~~i~~~~~~----~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-------~~--d~~ 473 (778)
.|..+-+.+.-+|+++++...|..-.. .|-. .....++.|.+.|.-.|+++.|.+.++... .+ ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 456666666778899999988876432 2321 234456678888889999999999887642 23 234
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC----C-CCCChhHHHHHHHHHhccCcHHHHHHHHHHch
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTV----G-IKPDDITMVGILSACSHTGLVEKGTEYFYSMN 534 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~----g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 534 (778)
+..+|...|.-...+++|+..+.+-..- + ..-....+.++..++...|.-++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6777888888888899999988765431 1 11223467888889999999999987766543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.25 Score=45.30 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004024 445 NALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDALMLFESM 498 (778)
Q Consensus 445 ~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m 498 (778)
..++..+...|+.++|.+..+.+.. | |...|..+|.+|...|+..+|++.|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444445555555555444432 1 3334444555555555555555544444
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.036 Score=57.30 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=27.3
Q ss_pred HHcCCChHHHHHHHHhcccC---Cc----chHHHHHHHHHhcCCHHHHHHHHH
Q 004024 164 YAQNGYADAARRIFDRMLEK---NE----ISWNGLLAAYVQNGRIEEACMLFE 209 (778)
Q Consensus 164 ~~~~g~~~~A~~~~~~m~~~---d~----~t~~~ll~~~~~~g~~~~a~~~~~ 209 (778)
+|+.|+.+....+|+..++. |. ..|..|.++|.-.+++++|++.|.
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 45666666666666666532 21 234555556666667777777664
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.14 E-value=15 Score=42.85 Aligned_cols=97 Identities=16% Similarity=0.267 Sum_probs=58.4
Q ss_pred cCCChhHHHHHHhhCCC--CCcchHHHHHHHH--HcCCChHHHHHHHHhcc---cCCcchHHHHHHHHHhcCCHHHHHHH
Q 004024 135 RNKSLSAARNLFEMMPK--RDVVSWNTMLSGY--AQNGYADAARRIFDRML---EKNEISWNGLLAAYVQNGRIEEACML 207 (778)
Q Consensus 135 ~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~--~~~g~~~~A~~~~~~m~---~~d~~t~~~ll~~~~~~g~~~~a~~~ 207 (778)
..+++..|++..++..+ ||. .|...+.++ .+.|+.++|..+++..- ..|..|...+-..|...++.++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 34566677766665542 433 344444544 46777777777776654 23666777777777777777777777
Q ss_pred HHhcccCCc--cHhhHHHHHHHhcCCh
Q 004024 208 FESKANWEV--VSWNSLMGGFVKQKRL 232 (778)
Q Consensus 208 ~~~~~~~~~--~~~~~li~~~~~~g~~ 232 (778)
++++...++ .....+..+|.+.+++
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHH
Confidence 777766543 2333444455554444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.057 Score=43.39 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CC---CCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 575 AATWGALLGACRLYGKTELAEKAAEVIFEME----PE---NAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 575 ~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~----p~---~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
..+++.+...+...|++++|+..+++++++. ++ -..++..++.+|...|++++|.+.++...
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3478889999999999999999999999752 22 24568899999999999999999987654
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.64 Score=41.75 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG 610 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 610 (778)
...|..-.. ..+.|++++|.+.|+.+ |..|- .-+---|+.++...|+++.|...+++.+++.|.++.
T Consensus 11 ~~ly~~a~~-~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 11 QELYQEAQE-ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 344443333 34678999999888877 54443 345566889999999999999999999999999865
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.89 E-value=6.5 Score=37.94 Aligned_cols=191 Identities=18% Similarity=0.151 Sum_probs=129.9
Q ss_pred HHHhcccccHHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCh-hHHHHHHH-HHHHcCC
Q 004024 413 LSTCANLASLELGKQLHGQLVKV-GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDV-ISWNTMIA-GYARHGF 487 (778)
Q Consensus 413 l~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~-~~~~~li~-~~~~~g~ 487 (778)
.......+.+..+.......... ........+..+...+...+..+.+.+.+..... ++. ..+..... .+...|+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (291)
T COG0457 66 ALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGD 145 (291)
T ss_pred HHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCC
Confidence 33344444444444444444332 2344455566667777777888888888887765 222 23333334 6888999
Q ss_pred hHHHHHHHHHHHHCCCCC----ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHH
Q 004024 488 GKDALMLFESMKTVGIKP----DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEA 562 (778)
Q Consensus 488 ~~~Al~l~~~m~~~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA 562 (778)
.++|...|.+... ..| ....+......+...+..+++...+...... ... ....+..+...+...|.+++|
T Consensus 146 ~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a 221 (291)
T COG0457 146 YEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEA 221 (291)
T ss_pred HHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHH
Confidence 9999999999865 444 2334444444567788999999999888753 222 367788888889999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 004024 563 QNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 563 ~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~ 607 (778)
...+... ...|+ ...+..+...+...++.+.+...+++..+..|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 222 LEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9988877 34454 456666666666667899999999999999887
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.84 E-value=2.9 Score=40.81 Aligned_cols=138 Identities=14% Similarity=0.124 Sum_probs=68.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHH
Q 004024 478 MIAGYARHGFGKDALMLFESMKTVGIKPD----DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLL 553 (778)
Q Consensus 478 li~~~~~~g~~~~Al~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 553 (778)
....+.+.|++.+|++.|+++... -|+ ......+..++-..|+.++|...|+...+.|.-.|... +.....++
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~ 87 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGL 87 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHH
Confidence 344556677777777777777763 232 12344556667777777777777777766655555432 11111111
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC-----------------chHHHHH
Q 004024 554 GRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENA-----------------GMYVLLS 616 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~-----------------~~y~~L~ 616 (778)
+.-....... ... +..+....|...++.+++.-|+++ ..-..++
T Consensus 88 ~~~~~~~~~~------~~~-------------~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 88 SYYKQIPGIL------RSD-------------RDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHH-------TT----------------HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCccch------hcc-------------cChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100000000 001 111223344444444444444433 2234567
Q ss_pred HHhhhcCCcchHHHHHHHHHh
Q 004024 617 NLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 617 ~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..|.+.|.|.-|..-++.+.+
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH
Confidence 889999999999888887765
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.66 Score=41.18 Aligned_cols=96 Identities=10% Similarity=0.156 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHT 520 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 520 (778)
..++.++|-++++.|+++....+.+..=.-|+ .+-...+. --......|+..+..+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 45667777788888888877777765422111 11111111 112234789999999999999999
Q ss_pred CcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 521 GLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 521 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
|++..|.++.+...+.|+++-+...|..|+.-
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999988888888877753
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.73 E-value=11 Score=40.17 Aligned_cols=131 Identities=15% Similarity=0.154 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHH-HHHHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVG-IKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHY-TCMVD 551 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-~~lv~ 551 (778)
.|...+..-.+..-.+.|..+|-+..+.| +.|+...+.+.+.-++ .|+..-|..+|+.=...+ ||...| .-.++
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYLL 474 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHHH
Confidence 45556665555555667777777777776 4455555666655443 455666666666544332 333332 23445
Q ss_pred HHhhcCCHHHHHHHHHhC-C-CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 552 LLGRAGRLDEAQNLMKNM-P-FEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m-~-~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
-+.+-++-+.|..+|++. | ++.+ ..+|..++.-=...|++..+..+-+++.++-|+.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 556667777777777644 1 2223 4467777776677777777777777777777765
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.61 E-value=5 Score=47.91 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=25.5
Q ss_pred CCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHh
Q 004024 261 NYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDA 303 (778)
Q Consensus 261 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 303 (778)
+++++|..-+.++. ...|.-.+..--++|.+.+|+.++..
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~~ 933 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYKP 933 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheecc
Confidence 45667766666654 33455566666677888888776643
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=10 Score=39.05 Aligned_cols=75 Identities=5% Similarity=-0.026 Sum_probs=45.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhc-cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEI-VDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSA 516 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m-~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a 516 (778)
.++..+-..-+.++++.|+. .|...+-+. ..++ ..-..+.++...|.. +|+..+.++.+ -.||...-...+.+
T Consensus 203 D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a 276 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDK 276 (280)
T ss_pred CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHH
Confidence 44666666677777888874 344444433 3333 234567778888875 68888888776 34566555555555
Q ss_pred Hh
Q 004024 517 CS 518 (778)
Q Consensus 517 ~~ 518 (778)
|.
T Consensus 277 ~~ 278 (280)
T PRK09687 277 LK 278 (280)
T ss_pred Hh
Confidence 43
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.78 Score=49.36 Aligned_cols=116 Identities=9% Similarity=0.043 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 004024 522 LVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGR---------AGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYG 589 (778)
Q Consensus 522 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r---------~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g 589 (778)
..+.|..+|.+....-.+.|+ ...|..+...+.. .....+|.++.++. .+.| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356778888887754466775 4445544433221 22345666666555 4455 5666667777777788
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 590 KTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 590 ~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+.+.|...++++.+++|+.+..+...+.+..-+|+.++|.+..+...+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999998876443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.38 E-value=1.2 Score=48.18 Aligned_cols=220 Identities=19% Similarity=0.139 Sum_probs=111.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHH---
Q 004024 484 RHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLD--- 560 (778)
Q Consensus 484 ~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~--- 560 (778)
+..+.+.-+++-++..+ +.||..+...+| |--.+..+.++.++|++..+. | .. .|++....+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~-------~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EA-------SLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HH-------hhchhhhhhccc
Confidence 34455556666666666 667765443333 233445567777777765442 0 00 111111010
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 561 EAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPE--NAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 561 eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~--~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
...+.+.+-+..|-..+=..|...+++.|..++|.+.++.+++..|. +-.....|.+.+...+++.|+..++.+-.+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 01111111122233334455667777788888888888888776664 3456677778888888888888877776554
Q ss_pred CCccCCceeEEEeCCEEEEEEeCCCCCcch-------HHHHHHHHHHHHHHHhCCcccCCCccccccchhhHhhh-hhhh
Q 004024 639 GVKKVTGYSWLEVQNKVHTFSVGDTLHPEK-------DRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHM-LRYH 710 (778)
Q Consensus 639 g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~-------~~i~~~l~~l~~~~~~~gy~p~~~~~~~~~~~~~k~~~-l~~h 710 (778)
...|....+|...-=+ .=.+||+..|+. ......++-+.+.++--++||+--.-.-.+--. -|.+ -..-
T Consensus 325 ~lpkSAti~YTaALLk--aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilP-PehilkrGD 401 (539)
T PF04184_consen 325 SLPKSATICYTAALLK--ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILP-PEHILKRGD 401 (539)
T ss_pred cCCchHHHHHHHHHHH--HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCC-hHHhcCCCc
Confidence 4444333333210000 001233333321 123345667777888888888632211111111 1222 2345
Q ss_pred hHHHHHHHhhh
Q 004024 711 SEKLAVAYGIL 721 (778)
Q Consensus 711 se~la~~~gl~ 721 (778)
||-+|-||--+
T Consensus 402 SEAiaYAf~hL 412 (539)
T PF04184_consen 402 SEAIAYAFFHL 412 (539)
T ss_pred HHHHHHHHHHH
Confidence 77777766433
|
The molecular function of this protein is uncertain. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.2 Score=32.47 Aligned_cols=33 Identities=30% Similarity=0.334 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
..|..+...+...|+++.|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467788888999999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.15 Score=33.22 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
.+|..+..++...|+++.|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 478888999999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.19 E-value=1 Score=44.75 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=84.9
Q ss_pred HHHHHHhcc--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC-----------
Q 004024 460 AYHAFEEIV--DKDVISWNTMIAGYARH-----GFGKDALMLFESMKTVGIKPDDITMVGILSACSHTG----------- 521 (778)
Q Consensus 460 A~~~f~~m~--~~d~~~~~~li~~~~~~-----g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g----------- 521 (778)
.++.|.... ++|-.+|-+++..+..+ ++.+=....++.|.+-|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666665 67888999999888765 566667777889999999999999999998765432
Q ss_pred -----cHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCH-HHHHHHHHhC
Q 004024 522 -----LVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRL-DEAQNLMKNM 569 (778)
Q Consensus 522 -----~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~-~eA~~~~~~m 569 (778)
+-+-|+.++++|.. +|+.||-++-..|++++||.|.. .+...+.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 33457889999964 69999999999999999999874 4455555445
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.01 E-value=8.5 Score=39.65 Aligned_cols=20 Identities=10% Similarity=-0.155 Sum_probs=14.6
Q ss_pred HHHHHcCChHHHHHHHHHHH
Q 004024 583 GACRLYGKTELAEKAAEVIF 602 (778)
Q Consensus 583 ~a~~~~g~~~~a~~~~~~~~ 602 (778)
..+...+|++.|...++-.+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 44567788888888887544
|
It is also involved in sporulation []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=92.90 E-value=4.3 Score=39.57 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=93.9
Q ss_pred HHHHhcCCHHHHHHHHHhccC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhcc
Q 004024 449 VMYCKCGSVEEAYHAFEEIVD--KD----VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD--ITMVGILSACSHT 520 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~--~d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~--~t~~~ll~a~~~~ 520 (778)
..+...|++++|.+.|+.+.. |+ ..+.-.++.++-+.|++++|+..|++.++ .-|+. +.+...+.+.+..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhhHHHHHHHHHH
Confidence 345677899999999998865 32 23455677888899999999999999887 44543 2333333333322
Q ss_pred C-------------cHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004024 521 G-------------LVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRL 587 (778)
Q Consensus 521 g-------------~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~ 587 (778)
. ...+|...|+. ++.-|=.+...++|...+..+.-.- ..-=-.+..-+.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~----------------li~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEE----------------LIKRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHH----------------HHHH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHHHHHH----------------HHHHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 1 12333444443 4444444455555555444331000 0000123355677
Q ss_pred cCChHHHHHHHHHHHhcCCCCCc---hHHHHHHHhhhcCCcchH
Q 004024 588 YGKTELAEKAAEVIFEMEPENAG---MYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 588 ~g~~~~a~~~~~~~~~l~p~~~~---~y~~L~~~y~~~g~~~~a 628 (778)
.|.+.-|..-++.+++.-|+.+. +...|...|.+.|..+.+
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 88899999999999998888643 456778888888887743
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.97 Score=49.62 Aligned_cols=106 Identities=24% Similarity=0.287 Sum_probs=70.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004024 510 MVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYG 589 (778)
Q Consensus 510 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g 589 (778)
...++.-+-+.|..+.|+++-..-. .=.++..+.|+++.|.++.++.+ +...|..|......+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcC
Confidence 4444445555555665555432211 12455667899999988877654 7779999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 590 KTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 590 ~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
|++.|++++++. .-+..|+-+|...|+.+.-.++-+....+|
T Consensus 362 ~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 362 NIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp BHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999999988874 456778888888888877766666665554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.7 Score=44.06 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=21.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
|...|-.|...|..+|++..|...|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 566777777777777777777777777666
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.13 E-value=9.5 Score=37.92 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=39.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-CC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChH
Q 004024 478 MIAGYARHGFGKDALMLFESMKTVGI-KP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSK 544 (778)
Q Consensus 478 li~~~~~~g~~~~Al~l~~~m~~~g~-~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 544 (778)
=+..-.+.|++++|.+.|+.+..+-. .| ...+-..++-|.-+.++.++|...+++..+.|+-.||+.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 34444566777777777777765321 11 233455555666667777777777777666666666654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=91.95 E-value=5.7 Score=35.90 Aligned_cols=122 Identities=15% Similarity=0.179 Sum_probs=74.8
Q ss_pred hHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHH
Q 004024 412 VLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDA 491 (778)
Q Consensus 412 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A 491 (778)
++..+...+.......+++.+.+.+ ..+..+.|.|+.+|++.. .++....++. ..+......++..|.+++.++++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHH
Confidence 3444444445555555555555554 356778888999998764 3445555552 33445556678888888888888
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHh-ccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHH
Q 004024 492 LMLFESMKTVGIKPDDITMVGILSACS-HTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLL 553 (778)
Q Consensus 492 l~l~~~m~~~g~~pd~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 553 (778)
..++.++.. +...+.... +.++++.|.+++.+- .+.+.|..++..+
T Consensus 89 ~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~-------~~~~lw~~~~~~~ 135 (140)
T smart00299 89 VELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ-------NNPELWAEVLKAL 135 (140)
T ss_pred HHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC-------CCHHHHHHHHHHH
Confidence 888887633 112222222 337888888888752 1455666666544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.93 E-value=2.6 Score=46.96 Aligned_cols=126 Identities=16% Similarity=0.075 Sum_probs=59.0
Q ss_pred cchHHHhcccccHHHHHHHHHHHHHcCCCCchh------HHHHHHHHHH----hcCCHHHHHHHHHhccC--CChhHHHH
Q 004024 410 TSVLSTCANLASLELGKQLHGQLVKVGFEAGCF------VGNALLVMYC----KCGSVEEAYHAFEEIVD--KDVISWNT 477 (778)
Q Consensus 410 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~------~~~~Li~~y~----k~g~~~~A~~~f~~m~~--~d~~~~~~ 477 (778)
..+++...-.|+-+.|.+.+....+.+--..+. .|...+..+. ....++.|.++++.+.+ |+...|.-
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 344555555566666666666554432111111 1122222111 23455666666666655 56555544
Q ss_pred HH-HHHHHcCChHHHHHHHHHHHHCCC---CCChhHHHHHHHHHhccCcHHHHHHHHHHchh
Q 004024 478 MI-AGYARHGFGKDALMLFESMKTVGI---KPDDITMVGILSACSHTGLVEKGTEYFYSMNR 535 (778)
Q Consensus 478 li-~~~~~~g~~~~Al~l~~~m~~~g~---~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 535 (778)
.- ..+...|+.++|++.|++...... +.....+--+...+.-.+++++|.++|..+.+
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 33 234456666666666665442110 01122223333344445555555555555554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.20 E-value=5.5 Score=38.25 Aligned_cols=180 Identities=17% Similarity=0.155 Sum_probs=106.0
Q ss_pred HHhcCCHHHHHHHHHhccC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHH
Q 004024 451 YCKCGSVEEAYHAFEEIVD--KD-VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 451 y~k~g~~~~A~~~f~~m~~--~d-~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 526 (778)
|-..|-.+-|+--|.+... |+ +..||-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++-..|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 3334555555555555432 33 45678777777888899999999888877 5553 33444444456677888888
Q ss_pred HHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 004024 527 TEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEP 606 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p 606 (778)
.+-|...-..-.-.|-...|- .+--+.-++.+|..-+.+--...|..-|+.-+-.+.. |.+. -+.+++++.+-..
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWL---Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~ 227 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWL---YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADAT 227 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHH---HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhcc
Confidence 776655433222233222222 2223444666776544332225566677766654432 2221 1223333333222
Q ss_pred CC-------CchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 607 EN-------AGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 607 ~~-------~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++ ..+|.-|+.-|...|..++|..+++....
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 22 35788999999999999999999998765
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.12 E-value=29 Score=38.70 Aligned_cols=178 Identities=8% Similarity=0.017 Sum_probs=91.1
Q ss_pred cccHHHHHHHHHHhcCChhHHHHHhhhCCCCC---eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHH
Q 004024 339 NVASWNTMITGYAQSGEITHARNLFDRMPQHD---CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLST 415 (778)
Q Consensus 339 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a 415 (778)
+..+|..-++.-.+.|+.+...-+|++..-+= ...|--.+.-....|+.+-|-.++..-.+--.+-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34566666777777777777777777654331 123433333333446666665555444332222111111111122
Q ss_pred hcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH---HHHHhccC--CChhHHHHHHHHH-----HHc
Q 004024 416 CANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAY---HAFEEIVD--KDVISWNTMIAGY-----ARH 485 (778)
Q Consensus 416 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~---~~f~~m~~--~d~~~~~~li~~~-----~~~ 485 (778)
+-..|+...|+.+++.+...- +.-+.+-.--+.+--+.|..+.+. .+...... .+....+.+.--+ .-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 445667777777777766554 333334444466666777777776 33333322 2222333333222 235
Q ss_pred CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHh
Q 004024 486 GFGKDALMLFESMKTVGIKPDDITMVGILSACS 518 (778)
Q Consensus 486 g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~ 518 (778)
++.+.|..++.+|.+. +.++..-|..++.-+.
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 6777788888777763 3334444555555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.95 E-value=1.9 Score=43.08 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=67.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----C---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHH
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNM----P---FEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN---AGMYVL 614 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m----~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~---~~~y~~ 614 (778)
.|+.-+++| ..|++.+|...|..- | ..|++.-| |..++...|+++.|...|..+..--|++ |..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 566666655 566788887766554 3 45666666 6777888888888888888888866654 566888
Q ss_pred HHHHhhhcCCcchHHHHHHHHHhC
Q 004024 615 LSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 615 L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
|+.+..+.|+.++|..+++...++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888888888888888888776653
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.54 E-value=7.2 Score=42.40 Aligned_cols=100 Identities=15% Similarity=0.204 Sum_probs=70.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCC--HHHHHHHHHHHHH
Q 004024 512 GILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMP-F-EPD--AATWGALLGACRL 587 (778)
Q Consensus 512 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~--~~~~~~Ll~a~~~ 587 (778)
.+...+-+.|..+||.+.|.+|.+++...-.......|+..|...+...|+..++.+.+ + -|. ...|++.|--.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 34455667899999999999998765543345566678999999999999999998874 1 244 3456655544454
Q ss_pred cCCh---------------HHHHHHHHHHHhcCCCCCch
Q 004024 588 YGKT---------------ELAEKAAEVIFEMEPENAGM 611 (778)
Q Consensus 588 ~g~~---------------~~a~~~~~~~~~l~p~~~~~ 611 (778)
-+|. ..|.++..++.+.+|.-+..
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 4441 23567888999999887644
|
The molecular function of this protein is uncertain. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.015 Score=53.31 Aligned_cols=56 Identities=21% Similarity=0.142 Sum_probs=32.5
Q ss_pred cchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 004024 410 TSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFE 465 (778)
Q Consensus 410 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 465 (778)
..++..+.+.+.++...++++.+.+.+-..+..+.+.|+.+|++.+..+...+.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34555555556666666666666655545566677777777777655555555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.19 E-value=51 Score=39.94 Aligned_cols=151 Identities=16% Similarity=0.118 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHH----HHhccCcHHHHHHHH
Q 004024 455 GSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILS----ACSHTGLVEKGTEYF 530 (778)
Q Consensus 455 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~----a~~~~g~~~~a~~~~ 530 (778)
|++++|..-+.++. ...|.-.+.---+||.+.+|+.++ +|+..++..+.. -|...+.+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45566665555543 223444444445667777776654 455544444433 334455555555555
Q ss_pred HHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 531 YSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAAT--WGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 531 ~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~--~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
+..-+ ..--+.+|-.+|+|.+|+.+..++....|... -..|.+-|...+..-+|-++.+....
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----- 1027 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS----- 1027 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-----
Confidence 44321 11234455666777777777766643334332 24555666666655444444433221
Q ss_pred CchHHHHHHHhhhcCCcchHHHHHH
Q 004024 609 AGMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 609 ~~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
.+.--...|.++..|++|.++-.
T Consensus 1028 --d~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1028 --DPEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred --CHHHHHHHHhhHhHHHHHHHHHH
Confidence 11222334556666777766543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=89.99 E-value=8.2 Score=43.05 Aligned_cols=114 Identities=17% Similarity=0.099 Sum_probs=71.7
Q ss_pred cCcHHHHHHHHHHchhhcCCCCChHHHHHHH-HHHhhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHHcCChH
Q 004024 520 TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV-DLLGRAGRLDEAQNLMKNMPF------EPDAATWGALLGACRLYGKTE 592 (778)
Q Consensus 520 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv-~~l~r~g~~~eA~~~~~~m~~------~p~~~~~~~Ll~a~~~~g~~~ 592 (778)
...++.+.+++..+.+. -|+...|...- .++...|++++|.+.+++.-. +-....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34566677777766654 34544443332 445556777777777775410 112333445566677788899
Q ss_pred HHHHHHHHHHhcCCCCCchHH-HHHHHhhhcCCc-------chHHHHHHHHH
Q 004024 593 LAEKAAEVIFEMEPENAGMYV-LLSNLYAASGRW-------GDVSKVRLKMR 636 (778)
Q Consensus 593 ~a~~~~~~~~~l~p~~~~~y~-~L~~~y~~~g~~-------~~a~~~~~~m~ 636 (778)
+|...+.++.+...-+.+.|. ..+-+|...|+. ++|.++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999999888887776656554 556667778888 66666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.81 E-value=1.4 Score=41.60 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=68.5
Q ss_pred HHHhhcCCHHHHHHHHHhC----CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcC
Q 004024 551 DLLGRAGRLDEAQNLMKNM----PFEP---DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASG 623 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m----~~~p---~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g 623 (778)
+-+...|.+++|..-+... |--| ..+.|..-..+..+.+..+.|+....+++++.|.+..+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3345677777777766554 2111 13445555566778889999999999999999999899999999999999
Q ss_pred CcchHHHHHHHHHhCC
Q 004024 624 RWGDVSKVRLKMRDRG 639 (778)
Q Consensus 624 ~~~~a~~~~~~m~~~g 639 (778)
++++|.+-++.+.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999888743
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.77 E-value=3.5 Score=43.48 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~ 622 (778)
.+..+.-.+.+.+++.+|++.-++. ..+| |+-..--=..||...|+++.|+..++++++++|+|-.+-..|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3455566667777777777766554 3344 3444444567888899999999999999999999988888888887777
Q ss_pred CCcchH-HHHHHHHHh
Q 004024 623 GRWGDV-SKVRLKMRD 637 (778)
Q Consensus 623 g~~~~a-~~~~~~m~~ 637 (778)
.+.++. .+++..|-.
T Consensus 339 ~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 666655 667777754
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.69 E-value=3.1 Score=42.45 Aligned_cols=159 Identities=9% Similarity=-0.011 Sum_probs=112.1
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHH----HHHHhhcCCH
Q 004024 484 RHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCM----VDLLGRAGRL 559 (778)
Q Consensus 484 ~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l----v~~l~r~g~~ 559 (778)
-.|+..+|-..++++.+. .+.|-..+.-.-.+|...|+.+.-...++.+.. .-.|+...|..+ .-.+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 357788888888888874 445667777778899999999988888888764 335565555544 3445689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CCchHHHHHHHhhhcCCcchHHHHHH
Q 004024 560 DEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPE----NAGMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 560 ~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~----~~~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
++|++.-++. .+.| |.-.-.++.......|..++|.+..++--..=.+ -+-.|-..+-.|.+.+.++.|.+++.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998877 5555 3445566777777888888887766554332111 13456677778888999999999987
Q ss_pred HHHhCCCccCCc
Q 004024 634 KMRDRGVKKVTG 645 (778)
Q Consensus 634 ~m~~~g~~k~~g 645 (778)
.=.-+.+.|..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 654445555554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.65 E-value=45 Score=38.48 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=42.0
Q ss_pred HHHcCCChhHHHHHHhhCCC--C---CcchHHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHH
Q 004024 132 GYVRNKSLSAARNLFEMMPK--R---DVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIE 202 (778)
Q Consensus 132 ~~~~~g~~~~A~~~f~~m~~--~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~ 202 (778)
-+.+.+.+++|+..-..-.. + --..+-..|..+.-.|++++|-.+.-.|...+..-|.--+.-++..++..
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 34455666677666655442 1 12346666677777777777777766666666666655555555555443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.58 E-value=31 Score=36.61 Aligned_cols=145 Identities=8% Similarity=-0.047 Sum_probs=76.0
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---ChhHHHHHHHHHhccCcHHHHHHHHHHchhh-cCCCCChHH
Q 004024 470 KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP---DDITMVGILSACSHTGLVEKGTEYFYSMNRD-YGVIPNSKH 545 (778)
Q Consensus 470 ~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~ 545 (778)
....+|..++..+.++|+++.|...+.++...+..+ +...+..-....-..|+-++|...++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345577788888888888888888888877643222 2223333344555667777777777666551 111101111
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--C-CCC--CHHHHHHHHHHHHH------cCChHHHHHHHHHHHhcCCCCCchHHH
Q 004024 546 YTCMVDLLGRAGRLDEAQNLMKNM--P-FEP--DAATWGALLGACRL------YGKTELAEKAAEVIFEMEPENAGMYVL 614 (778)
Q Consensus 546 y~~lv~~l~r~g~~~eA~~~~~~m--~-~~p--~~~~~~~Ll~a~~~------~g~~~~a~~~~~~~~~l~p~~~~~y~~ 614 (778)
...+...+.. ..+....- . ..+ -..++..+..-+.. .++.+.+...++.+.++.|+....+..
T Consensus 224 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 224 NAELKSGLLE------SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred HHHHhhcccc------ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 1111100000 00000000 0 000 01122222222223 377888999999999999988888888
Q ss_pred HHHHhh
Q 004024 615 LSNLYA 620 (778)
Q Consensus 615 L~~~y~ 620 (778)
++..+.
T Consensus 298 ~a~~~~ 303 (352)
T PF02259_consen 298 WALFND 303 (352)
T ss_pred HHHHHH
Confidence 777664
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.51 E-value=4 Score=36.76 Aligned_cols=112 Identities=14% Similarity=0.070 Sum_probs=51.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCH
Q 004024 482 YARHGFGKDALMLFESMKTVGIKP--DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRL 559 (778)
Q Consensus 482 ~~~~g~~~~Al~l~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 559 (778)
..+.|++++|.+.|+.+...---+ ....-..++.++...|++++|...++..++.+.-.|++ .|.....+++.-...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHHHh
Confidence 345566666666666665531100 12234445555555555555555555555444444432 233333332221111
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 004024 560 DEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 560 ~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
+ ..+..+. +.=+-.+....|...++++++.-|++.
T Consensus 99 ~---~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 99 E---GSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred h---hHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 1 1111111 000111235677788888888888763
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.51 E-value=6.5 Score=39.80 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=74.8
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH---HHHHHHcCChHH
Q 004024 517 CSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGAL---LGACRLYGKTEL 593 (778)
Q Consensus 517 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~L---l~a~~~~g~~~~ 593 (778)
....|+..++...|...... ..-+.+.-..|...|...|+.++|..++..+|.+-...-|..| +.......+...
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 34556666666666655432 1113445566778888889999999999888765544444331 222223333322
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 594 AEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 594 a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
. ..++.-+.-+|+|...-..|+..|...|+.++|.+.+-.+.
T Consensus 222 ~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 I-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred H-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 23344556789999999999999999999999988755443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.43 E-value=1.5 Score=44.80 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=61.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCC
Q 004024 480 AGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGR 558 (778)
Q Consensus 480 ~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~ 558 (778)
.-|.++|.+++|++.|.+-+. +.| |.+++..-..||.+...+..|..-.+....- -...+.+|.|.|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHHH
Confidence 457778888888888887766 677 8888888777887776666554433332210 1123445555443
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 004024 559 LDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG 610 (778)
Q Consensus 559 ~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 610 (778)
-.+ ..|+.++|.+-++.+++++|++..
T Consensus 174 AR~-------------------------~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 174 ARE-------------------------SLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHH-------------------------HHhhHHHHHHhHHHHHhhCcccHH
Confidence 333 345667788888888888888643
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.25 E-value=7 Score=40.47 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=57.4
Q ss_pred HHHhccCcHHHHHHHHHHchhhcC--CCC--ChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHH-----HH
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYG--VIP--NSKHYTCMVDLLGRAGRLDEAQNLMKNM-------PFEPDAA-----TW 578 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~--~~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~~~-----~~ 578 (778)
.|..-.+.++++++.|+...+.-. -.| ....|..|..+|++..+.++|.-+..+. .++.=.. +.
T Consensus 130 ~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 130 NAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 344444456666666665543111 111 2345666666666666666655443332 2111111 12
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc--CCCCC----chHHHHHHHhhhcCCcchHHH
Q 004024 579 GALLGACRLYGKTELAEKAAEVIFEM--EPENA----GMYVLLSNLYAASGRWGDVSK 630 (778)
Q Consensus 579 ~~Ll~a~~~~g~~~~a~~~~~~~~~l--~p~~~----~~y~~L~~~y~~~g~~~~a~~ 630 (778)
-.+.-+++..|.+..|.+..+.+.++ ...|. .....+++||-..|+.|.|..
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~ 267 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFR 267 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHH
Confidence 22335566666666666666665543 22222 223456667776666665544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.09 E-value=51 Score=38.37 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=37.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHH----chhhcCCCCChHHHHHHHHHHh
Q 004024 479 IAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYS----MNRDYGVIPNSKHYTCMVDLLG 554 (778)
Q Consensus 479 i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~----m~~~~~~~p~~~~y~~lv~~l~ 554 (778)
+..+.++.+.+.++.+.+..-.. |+.-|..+|+-+.+.+.++.-.++..+ +.....++| ..+++.|+
T Consensus 712 ~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ipp-----l~VL~~La 782 (933)
T KOG2114|consen 712 MLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPP-----LHVLQILA 782 (933)
T ss_pred HHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCH-----HHHHHHHh
Confidence 33445555566666555554332 455566666666666655554443333 333323443 23667777
Q ss_pred hcCCH
Q 004024 555 RAGRL 559 (778)
Q Consensus 555 r~g~~ 559 (778)
+.+.+
T Consensus 783 kn~~l 787 (933)
T KOG2114|consen 783 KNGTL 787 (933)
T ss_pred cCCce
Confidence 77653
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.90 E-value=29 Score=35.37 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=80.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHH-HHHHHHHHhhcCC
Q 004024 481 GYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKH-YTCMVDLLGRAGR 558 (778)
Q Consensus 481 ~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-y~~lv~~l~r~g~ 558 (778)
.....|+..+|..+|..... ..|+ ...-..+..++...|+++.|..++..+-.+. .-+..+ ...=+..+.++..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~--~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA--QDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc--hhhHHHHHHHHHHHHHHHhc
Confidence 34556677777777766665 2332 2344455566677777777777776653220 001111 1223455666665
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCCchHHHHHHHhhhcCCcchH-HHHHHH
Q 004024 559 LDEAQNLMKNMPFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEME--PENAGMYVLLSNLYAASGRWGDV-SKVRLK 634 (778)
Q Consensus 559 ~~eA~~~~~~m~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~--p~~~~~y~~L~~~y~~~g~~~~a-~~~~~~ 634 (778)
..+..++..+..-.| |...--.|...+...|+.+.|...+-.++..+ -++..+--.|..++...|.-+.+ .+.|+.
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 555555555554455 34444555566666677666655554444432 33455566666666666644433 334444
Q ss_pred H
Q 004024 635 M 635 (778)
Q Consensus 635 m 635 (778)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 4
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=31 Score=35.53 Aligned_cols=216 Identities=11% Similarity=0.003 Sum_probs=97.6
Q ss_pred hCCCCChhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCCCh----hHHHHHHhhC--CCCCcchHHH
Q 004024 86 SMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSL----SAARNLFEMM--PKRDVVSWNT 159 (778)
Q Consensus 86 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~f~~m--~~~d~~~~~~ 159 (778)
....+|..+.-..+.++...|..+-...+...+..+|...-...+.++++.|.. .++..++..+ ..+|..+-.+
T Consensus 31 ~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~ 110 (280)
T PRK09687 31 LLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRAS 110 (280)
T ss_pred HHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHH
Confidence 334456656666666666666543333333333455666666666677776653 3566666654 3456555555
Q ss_pred HHHHHHcCCCh-----HHHHHHHHhcc-cCCcchHHHHHHHHHhcCCHHHHHHHHHhccc-CCccHhhHHHHHHHhcC-C
Q 004024 160 MLSGYAQNGYA-----DAARRIFDRML-EKNEISWNGLLAAYVQNGRIEEACMLFESKAN-WEVVSWNSLMGGFVKQK-R 231 (778)
Q Consensus 160 li~~~~~~g~~-----~~A~~~~~~m~-~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g-~ 231 (778)
.+.++...+.. ..+...+.... .+|..+--..+.++.+.++ .++...+-.+++ .+..+-...+.++.+.+ .
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~ 189 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD 189 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC
Confidence 56665554321 22333333322 3344444455555555554 334444433333 22222223333333321 1
Q ss_pred hhHHHHHH-hhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCC
Q 004024 232 LGDAKWIF-DRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMP 305 (778)
Q Consensus 232 ~~~A~~~~-~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 305 (778)
...+...+ ..+..+|..+-..-+.++++.|+..-.-.+.+.+..++ ..-..+.++.+.|.. +|+..+..+.
T Consensus 190 ~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 190 NPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred CHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 12222222 22224455555555555555555322222222222222 223444455555553 3444444444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.74 Score=29.77 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
.+|..+...+...|+.+.|...+++.++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 357777788888899999999999999988853
|
... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.40 E-value=3 Score=42.34 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCChhHH
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKT-----VGIKPDDITM 510 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~-----~g~~pd~~t~ 510 (778)
..++..++..|..+|+.+.+...+++... -|...|..++.+|.+.|+...|+..|+++.. .|+.|-..+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34667788999999999999999998865 3667899999999999999999999998866 4555554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.38 E-value=29 Score=34.63 Aligned_cols=168 Identities=18% Similarity=0.125 Sum_probs=99.1
Q ss_pred HhcCCHHHHHHHHHhccCCC---h---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc-----
Q 004024 452 CKCGSVEEAYHAFEEIVDKD---V---ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHT----- 520 (778)
Q Consensus 452 ~k~g~~~~A~~~f~~m~~~d---~---~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~----- 520 (778)
.+.|++++|.+.|+.+.... . .+--.++-++-+.+++++|+..+++....--.-..+-|..-|.+.++-
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 46799999999999997632 2 233345567778999999999999988732211224455555554421
Q ss_pred --CcHHHH---HHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHH
Q 004024 521 --GLVEKG---TEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAAT--WGALLGACRLYGKTEL 593 (778)
Q Consensus 521 --g~~~~a---~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~--~~~Ll~a~~~~g~~~~ 593 (778)
.+...+ ..-|+....+| |+ +.--.+|..-+.... |... =.+...-|.++|...-
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ry---Pn-------------S~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRY---PN-------------SRYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHC---CC-------------CcchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHH
Confidence 112222 22222222222 21 111122222111110 0000 0133456778888888
Q ss_pred HHHHHHHHHhcCCCCCc---hHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 594 AEKAAEVIFEMEPENAG---MYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 594 a~~~~~~~~~l~p~~~~---~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
|..-++.+++--|+.+. .+-.|.++|...|..++|.+..+.+...
T Consensus 186 A~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 186 AINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 88888888887666544 4556677899999999999988887754
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.28 E-value=26 Score=34.54 Aligned_cols=88 Identities=17% Similarity=0.106 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC-----C--CCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCCCch
Q 004024 544 KHYTCMVDLLGRAGRLDEAQNLMKNMP-----F--EPDA-ATWGALLGACRLYGKTELAEKAAEVIFEM----EPENAGM 611 (778)
Q Consensus 544 ~~y~~lv~~l~r~g~~~eA~~~~~~m~-----~--~p~~-~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l----~p~~~~~ 611 (778)
+.|.....+|.|..+++||-..+.+-. + -|+. -.+-+++-.+....|+..|++.++.--+. .|++..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 345556666777777777766655431 1 1222 12333333444455777777777775553 4555556
Q ss_pred HHHHHHHhhhcCCcchHHHHH
Q 004024 612 YVLLSNLYAASGRWGDVSKVR 632 (778)
Q Consensus 612 y~~L~~~y~~~g~~~~a~~~~ 632 (778)
...|...| ..|+.+++.++.
T Consensus 231 lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHH
Confidence 65565555 566777666654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=88.06 E-value=1.6 Score=40.16 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=38.2
Q ss_pred HHhcCChHHHHHHHHhCC--CC-CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHH
Q 004024 288 YVQNGKVDEARMIFDAMP--EK-NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARN 361 (778)
Q Consensus 288 ~~~~g~~~~A~~l~~~m~--~~-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~ 361 (778)
+-+.|++++|..+|+-+. .+ |..-+..|..++-..+++++|...+.... ..|+...--....|...|+.+.|+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 334455555555554432 22 33444444444445555555555555443 3344444444455555555555555
Q ss_pred HhhhC
Q 004024 362 LFDRM 366 (778)
Q Consensus 362 ~f~~m 366 (778)
.|...
T Consensus 127 ~f~~a 131 (165)
T PRK15331 127 CFELV 131 (165)
T ss_pred HHHHH
Confidence 55444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=87.84 E-value=23 Score=37.71 Aligned_cols=62 Identities=11% Similarity=0.188 Sum_probs=29.4
Q ss_pred HHHhcCChhHHHHHhhhCCCC---Ceeehh----hHHHHHHh---cCChhHHHHHHHHHhhcCcccCccccc
Q 004024 349 GYAQSGEITHARNLFDRMPQH---DCISWA----AIIAGYAQ---SGYSEDSLRLFIEMKRYGERLNRSPFT 410 (778)
Q Consensus 349 ~y~k~g~~~~A~~~f~~m~~~---d~~~~~----~li~~~~~---~g~~~~Al~l~~~m~~~g~~pd~~t~~ 410 (778)
.|-...+++...++++.+... ++..-. ...-++.+ .|+.++|++++..+....-.++..||.
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 355555555555555555432 111111 12223334 566666666666654444444444443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.77 E-value=26 Score=35.45 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHhh-cCCHHHHHHHHHhC----------CCCCC-----HHHHHHHH----HHHHHcCChHHHHHHHHHH
Q 004024 542 NSKHYTCMVDLLGR-AGRLDEAQNLMKNM----------PFEPD-----AATWGALL----GACRLYGKTELAEKAAEVI 601 (778)
Q Consensus 542 ~~~~y~~lv~~l~r-~g~~~eA~~~~~~m----------~~~p~-----~~~~~~Ll----~a~~~~g~~~~a~~~~~~~ 601 (778)
|+.-|-..+.-..+ .-.++++.+++... +..-| ..+|..++ .+|...|++..|..+.+++
T Consensus 226 Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ 305 (361)
T COG3947 226 DVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRA 305 (361)
T ss_pred cHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44445444443322 23466777666555 11112 22444444 6788999999999999999
Q ss_pred HhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 602 FEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 602 ~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+.++|-+...+-.|.++|+..|+--.|.+-++.|.+
T Consensus 306 ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 306 LTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred hhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 999999999999999999999999999988888864
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.44 E-value=64 Score=37.60 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=46.2
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCCCchHHHHHHHhhhcCC
Q 004024 550 VDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFE-MEPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~-l~p~~~~~y~~L~~~y~~~g~ 624 (778)
+..+....+.+++..+.+..+ +-++..|--+|..+...++.+.-.+..+++++ ++.++.-+-..+.+++++.+-
T Consensus 712 ~~~~~q~~d~E~~it~~~~~g-~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 712 MLYFQQISDPETVITLCERLG-KEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHhhChHHHHHHHHHhC-ccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 334455667777777777775 33788888888888888876666555555554 333333333445556655554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.32 E-value=1.7 Score=30.26 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI 508 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~ 508 (778)
+|..+...|...|++++|+++|++..+ ..||..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 466677777777777777777777777 566654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.01 E-value=5.7 Score=43.70 Aligned_cols=69 Identities=23% Similarity=0.243 Sum_probs=35.1
Q ss_pred HHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHH
Q 004024 450 MYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEY 529 (778)
Q Consensus 450 ~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 529 (778)
...++|+++.|.++-++.. +...|..|......+|+.+-|.+.|.+... |..++--+.-.|+.+.-.++
T Consensus 327 LAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred HHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHH
Confidence 3445666666665544433 444666666666666666666666655332 33444444445554443333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.89 E-value=27 Score=32.63 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAE 599 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 599 (778)
++..+++.+...|++-+|.++.++.+. -+...-.-++.|-...+|...-..+++
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~-~~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHK-VDSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCC-cccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 366788888889999999999987531 111222334555555555444444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.66 E-value=11 Score=38.99 Aligned_cols=92 Identities=15% Similarity=0.272 Sum_probs=54.6
Q ss_pred HHHHHHHHHhccC-------CChhHHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhcc-Cc-
Q 004024 457 VEEAYHAFEEIVD-------KDVISWNTMIAGYARHGF----GKDALMLFESMKTVGIKPD-DITMVGILSACSHT-GL- 522 (778)
Q Consensus 457 ~~~A~~~f~~m~~-------~d~~~~~~li~~~~~~g~----~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~-g~- 522 (778)
...|..+|+.|.+ ++-.++.+|+.. ..++ .+.+...|+.+...|+..+ ..-+.+-+-++... ..
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3456666666654 233445555443 2222 3566778888888887664 43444444444322 22
Q ss_pred -HHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 523 -VEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 523 -~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
+.++.++++.+.+. |+++...||..+.-
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 45778888888776 88888888876643
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.39 E-value=6.5 Score=39.40 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCCh-HHHHHH
Q 004024 475 WNTMIAGYARHGFGKDALMLFESMKTVGIKPDD----ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNS-KHYTCM 549 (778)
Q Consensus 475 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~l 549 (778)
|+.-+. +.+.|++.+|...|...++.. |+. -.+-.|..++...|+.++|..+|..+.++|+-.|.. +.+--|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 554444 344566777777777777643 321 123345566666666666666666666665555543 555555
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 004024 550 VDLLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m 569 (778)
...+++.|+-++|-..+++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 55555555555555554444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.19 E-value=1.5 Score=28.32 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD 506 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd 506 (778)
.+|..+...|...|++++|++.|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4677788888888888888888888887 5665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.18 E-value=57 Score=35.72 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=32.0
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHhhCCC--C-CcchHHHHH-HHHHcCCChHHHHHHHHhcc
Q 004024 122 DLVSWNVMISGYVRNKSLSAARNLFEMMPK--R-DVVSWNTML-SGYAQNGYADAARRIFDRML 181 (778)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-d~~~~~~li-~~~~~~g~~~~A~~~~~~m~ 181 (778)
|+..|..-+.-+-+.+.+.+.-.+|.+|.. | ++..|-.-. .-|-.+-+++.|+.+|..-+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 666676666655555556666677776652 2 223332221 12233334666666666554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.74 E-value=22 Score=32.85 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=52.0
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHH
Q 004024 518 SHTGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLMKNMP-FEPDAATWGALLGACRLYGKTELAE 595 (778)
Q Consensus 518 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~Ll~a~~~~g~~~~a~ 595 (778)
...+..+++..++..+. -+.|. .++-.+-+.++.+.|+|.+|..+++++. -.|....-.+|+..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 44455666666665554 33443 2233334456678899999999998884 2345555567777776654444445
Q ss_pred HHHHHHHhcCCC
Q 004024 596 KAAEVIFEMEPE 607 (778)
Q Consensus 596 ~~~~~~~~l~p~ 607 (778)
..++.+++-.|+
T Consensus 98 ~~A~evle~~~d 109 (160)
T PF09613_consen 98 RYADEVLESGAD 109 (160)
T ss_pred HHHHHHHhcCCC
Confidence 556666666653
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.63 E-value=5.1 Score=35.17 Aligned_cols=53 Identities=19% Similarity=0.096 Sum_probs=30.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchh
Q 004024 481 GYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNR 535 (778)
Q Consensus 481 ~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 535 (778)
+.+..|+.+.|++.|.+.+. +-| +...|+.-..++.-.|+.++|++-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 44556666666666666665 444 344566666666666666666555555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.55 E-value=2.4 Score=42.18 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=69.6
Q ss_pred HHHHhhhCC--CCCeeehhhHHHHHHhc-----CChhHHHHHHHHHhhcCcccCcccccchHHHhccc------------
Q 004024 359 ARNLFDRMP--QHDCISWAAIIAGYAQS-----GYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANL------------ 419 (778)
Q Consensus 359 A~~~f~~m~--~~d~~~~~~li~~~~~~-----g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~------------ 419 (778)
.++.|...+ ++|-.+|-+++..+... +..+=....++.|.+-|+.-|..+|..+|+.+-+-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455566665 56667777777776543 44555556677788888888888888888776542
Q ss_pred ----ccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 004024 420 ----ASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGS 456 (778)
Q Consensus 420 ----~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 456 (778)
..-+-+..++++|...|+-||-.+-..|++.+++.|-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 2334567788888888888888888888888877765
|
|
| >KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.43 E-value=34 Score=36.10 Aligned_cols=110 Identities=21% Similarity=0.305 Sum_probs=83.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHhcC---CCC----
Q 004024 548 CMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGAL------------LGACRLYGKTELAEKAAEVIFEME---PEN---- 608 (778)
Q Consensus 548 ~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~L------------l~a~~~~g~~~~a~~~~~~~~~l~---p~~---- 608 (778)
.|...+-..|++++|.+++.+.|++ ||+++ +.-|...+|+-.|....+++...- |+-
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lK 211 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELK 211 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHH
Confidence 4556777899999999999988743 33332 467888999999988888877532 221
Q ss_pred CchHHHHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeC
Q 004024 609 AGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVG 661 (778)
Q Consensus 609 ~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~ 661 (778)
-.+|.++..++.+.+.+=++.+.++..-+-|-.+...--|+++-..+-.|+.-
T Consensus 212 lkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~L 264 (439)
T KOG1498|consen 212 LKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVL 264 (439)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEee
Confidence 24688999999999999999999999988776666555688876666667653
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.42 E-value=7.6 Score=36.85 Aligned_cols=59 Identities=22% Similarity=0.187 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 442 FVGNALLVMYCKCGSVEEAYHAFEEIVDKD------VISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 442 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d------~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
..+..+.+.|.+.|+++.|.+.|.++.+.. +..+-.+|......|++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456678888999999999999998886642 23566677777788888888887776655
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=85.18 E-value=1.5 Score=29.01 Aligned_cols=26 Identities=23% Similarity=0.061 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 578 WGALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 578 ~~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
|..|...|...|++++|+.+++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555666666666666666666443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.14 E-value=25 Score=37.41 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 573 PDAATWGALLGACRLYGKTELAEKAAEVIFEMEPE----NAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 573 p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~----~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
....+|..+...|+++|+++.|..++.++....+. .+.....-+.+.-..|+.++|.+..+...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999986632 4566777799999999999999987776653
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=84.71 E-value=2.7 Score=38.64 Aligned_cols=52 Identities=19% Similarity=0.328 Sum_probs=32.2
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 587 LYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 587 ~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
.+++.+.++.++.-+.-+.|+.+..-..-++++...|+|++|.++++.+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4456666666666666666666666666666666666666666666665543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=84.10 E-value=1.1e+02 Score=37.38 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=28.5
Q ss_pred HHHHhCCCCCcchHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhc
Q 004024 299 MIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQS 353 (778)
Q Consensus 299 ~l~~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~ 353 (778)
.+...+..+|..+-...+..+...+..+....+...+..+|..+-...+.+..+.
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLREL 679 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3334444556666666666666666544333333333355555555555555444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=83.74 E-value=2.4 Score=28.02 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMK 499 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~ 499 (778)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777777777777777777744
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.16 E-value=28 Score=34.32 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHh
Q 004024 342 SWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMK 398 (778)
Q Consensus 342 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 398 (778)
.++--..+|..+|..+.|-..+++... ...+-++++|+++|++-.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRAL 137 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHH
Confidence 455567788888888887777665422 234566788888887654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.98 E-value=3.4 Score=37.31 Aligned_cols=52 Identities=10% Similarity=0.150 Sum_probs=41.4
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 588 YGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 588 ~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
.++.+.++.++..+.-+.|+.+..-..-++++...|+|+||.++++...+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 6777788888888888888888888888888888888888888887776654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.59 E-value=1e+02 Score=35.78 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=36.7
Q ss_pred HHHHHhcCChHHHHHHHHh--CCCCCcchHHHHHHHHhccCChHHHHHHHHhhc-----cccccHHHHHHHHHHhc---C
Q 004024 285 VSGYVQNGKVDEARMIFDA--MPEKNTVSWNAMIAGYVQTKRMDMARELFEAMT-----CKNVASWNTMITGYAQS---G 354 (778)
Q Consensus 285 i~~~~~~g~~~~A~~l~~~--m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~-----~~~~~~~~~Li~~y~k~---g 354 (778)
...+.-.|+++.|++.+-+ ....|.+.+...+.-+.-.+-.+... ..+. .+...-+..||..|.+. .
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 3455667999999998887 22225666665555444333222211 2222 11123466777777764 3
Q ss_pred ChhHHHHHhhhCC
Q 004024 355 EITHARNLFDRMP 367 (778)
Q Consensus 355 ~~~~A~~~f~~m~ 367 (778)
+..+|.+.|--+.
T Consensus 342 d~~~Al~Y~~li~ 354 (613)
T PF04097_consen 342 DPREALQYLYLIC 354 (613)
T ss_dssp -HHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHH
Confidence 5566666655443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.45 E-value=18 Score=41.12 Aligned_cols=183 Identities=21% Similarity=0.348 Sum_probs=109.4
Q ss_pred hhHHHHHHhcCChhHHHHHHHHHhhcCc------ccC-cccccchHHHhcccccHHHHHHHHHHHHHc-C-CCCchhHHH
Q 004024 375 AAIIAGYAQSGYSEDSLRLFIEMKRYGE------RLN-RSPFTSVLSTCANLASLELGKQLHGQLVKV-G-FEAGCFVGN 445 (778)
Q Consensus 375 ~~li~~~~~~g~~~~Al~l~~~m~~~g~------~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~ 445 (778)
..|+-.|....+++..+++.+.+++--- .++ .+.|.-.|+-=.+-|+-++|..+.--+.+. | +.|
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap------ 278 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP------ 278 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC------
Confidence 3445556666667777777776654210 011 124555555555667777777766555443 3 233
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhH---HHHHHHHHhccCc
Q 004024 446 ALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDIT---MVGILSACSHTGL 522 (778)
Q Consensus 446 ~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t---~~~ll~a~~~~g~ 522 (778)
||||-||++ ++.|- +-+.|-..+..+.|++.|++.-+ +.|+..+ +..+|.|-.+.
T Consensus 279 ---Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~-- 336 (1226)
T KOG4279|consen 279 ---DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH-- 336 (1226)
T ss_pred ---ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh--
Confidence 478888875 33321 12334455667788889988877 7887654 44444433221
Q ss_pred HHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 523 VEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIF 602 (778)
Q Consensus 523 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~ 602 (778)
++...+ |+. .-..|-.+++|.|.++.-.++++- .+.+.+-...+|+.++..+++.++
T Consensus 337 Fens~E----lq~---------IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mf 393 (1226)
T KOG4279|consen 337 FENSLE----LQQ---------IGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMF 393 (1226)
T ss_pred ccchHH----HHH---------HHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHh
Confidence 111111 111 122355678999999887776643 244566677889999999999999
Q ss_pred hcCCCC
Q 004024 603 EMEPEN 608 (778)
Q Consensus 603 ~l~p~~ 608 (778)
++.|..
T Consensus 394 KLk~P~ 399 (1226)
T KOG4279|consen 394 KLKPPV 399 (1226)
T ss_pred ccCCce
Confidence 999864
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=82.19 E-value=77 Score=34.08 Aligned_cols=166 Identities=19% Similarity=0.215 Sum_probs=115.1
Q ss_pred cCCHHHHHHHHHhccC----CChhHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCChh----HHHHHHHHHhccCcHH
Q 004024 454 CGSVEEAYHAFEEIVD----KDVISWNTMIAGYA-RHGFGKDALMLFESMKTVGIKPDDI----TMVGILSACSHTGLVE 524 (778)
Q Consensus 454 ~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~-~~g~~~~Al~l~~~m~~~g~~pd~~----t~~~ll~a~~~~g~~~ 524 (778)
.|+-++|.+.+..+.. +.+..+-+|+.+-. ...+..+|+++|++..- .-|-.. ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5999999999998854 45566777776654 45689999999999876 566543 3333444668899999
Q ss_pred HHHHHHHHchhhcCCCCChHHHHH-HHHHHhh---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 525 KGTEYFYSMNRDYGVIPNSKHYTC-MVDLLGR---AGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEV 600 (778)
Q Consensus 525 ~a~~~~~~m~~~~~~~p~~~~y~~-lv~~l~r---~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 600 (778)
++..+-......|.-.|=...|.. ++.++.+ .-..+.-.+++..|+-.-...+|-.+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988777777776776675444432 3333333 334555566667764223356888888888899999999999999
Q ss_pred HHhcCCCCCchHHHHHHHhhhc
Q 004024 601 IFEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 601 ~~~l~p~~~~~y~~L~~~y~~~ 622 (778)
+..+.+. ...-...+++|..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aa 303 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGA 303 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHH
Confidence 9998744 34445556666544
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.00 E-value=2.6 Score=48.34 Aligned_cols=123 Identities=20% Similarity=0.262 Sum_probs=83.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 004024 485 HGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQN 564 (778)
Q Consensus 485 ~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~ 564 (778)
+.++++.+.+.+.-.--| .++|.-+.+.|-.+-|+.+.+.=...+ ++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 455666666554433222 234455566777777766654433332 33457899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCcc
Q 004024 565 LMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKK 642 (778)
Q Consensus 565 ~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k 642 (778)
.-++.. |..+|..|...-..+||.+.++..+++.. .+..|+-+|.-.|+.++ +.++|+-..+++
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~k--------nfekLsfLYliTgn~eK---L~Km~~iae~r~ 728 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTK--------NFEKLSFLYLITGNLEK---LSKMMKIAEIRN 728 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhh--------hhhheeEEEEEeCCHHH---HHHHHHHHHhhh
Confidence 988765 67899999999999999999999998765 45567788888888765 445555443433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.36 E-value=4.2 Score=41.65 Aligned_cols=87 Identities=13% Similarity=0.029 Sum_probs=70.5
Q ss_pred HHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 551 DLLGRAGRLDEAQNLMKN-MPFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~-m~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
+-|.+.|.++||++-+.+ |...| +++++..-..||.+.+.+..|+.-.+.++.++.....+|..-+.+-...|+..||
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 457788999999998865 46777 7888888889999999999999999999999877777777777777777888888
Q ss_pred HHHHHHHHh
Q 004024 629 SKVRLKMRD 637 (778)
Q Consensus 629 ~~~~~~m~~ 637 (778)
.+-.+...+
T Consensus 185 KkD~E~vL~ 193 (536)
T KOG4648|consen 185 KKDCETVLA 193 (536)
T ss_pred HHhHHHHHh
Confidence 776655443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.18 E-value=7.8 Score=39.42 Aligned_cols=61 Identities=18% Similarity=0.056 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 577 TWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 577 ~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..+.|-.++...++++.|.++.+.++.+.|+++.-.---+-+|++.|.+..|..-++.-.+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4567778899999999999999999999999998888899999999999999987776554
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=80.95 E-value=3 Score=30.49 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=26.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 004024 581 LLGACRLYGKTELAEKAAEVIFEMEPENAGMYVL 614 (778)
Q Consensus 581 Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~ 614 (778)
|.-++.+.|+++.|.+..+.+++++|+|..+-.+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4457789999999999999999999999554433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.15 E-value=3.7 Score=26.27 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVGIKPD 506 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd 506 (778)
.|..+...|...|++++|++.|++..+ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 466677777788888888888887776 5554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.06 E-value=6 Score=40.21 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 579 GALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 579 ~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..++.++...|+.+.+...++++++++|-+-..|..|...|...|+...|...++.+++
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 33444555556666666666666666666666666666666666666666666666554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.8 bits (156), Expect = 9e-11
Identities = 26/186 (13%), Positives = 53/186 (28%), Gaps = 7/186 (3%)
Query: 397 MKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGS 456
++ E +L SL++ + GQ + A
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 457 VEEAYHAFEEIVDK-------DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDIT 509
+ A+H + + +N ++ G+AR G K+ + + +K G+ PD ++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 510 MVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM 569
L E G+ + ++ RA L +
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
Query: 570 PFEPDA 575
P
Sbjct: 263 SLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.1 bits (123), Expect = 6e-07
Identities = 27/255 (10%), Positives = 61/255 (23%), Gaps = 14/255 (5%)
Query: 491 ALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDY--GVIPNSKHYTC 548
+ ++ C T + + + Y
Sbjct: 111 EQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNA 170
Query: 549 MVDLLGRAGRLDEAQNLMKNMP---FEPDAATWGALLGACRLYGKTELAEKAAEVIF-EM 604
++ R G E ++ + PD ++ A L G+ + E +M
Sbjct: 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC---MGRQDQDAGTIERCLEQM 227
Query: 605 EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD-----RGVKKVTGYSWLEVQNKVHTFS 659
E + L + + + V K K++ + S L
Sbjct: 228 SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGR 287
Query: 660 VGDTLHPEKDRIYAYLEELEFKLKQDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAYG 719
V + L E + ++ V + + +E +H +
Sbjct: 288 VSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEK 347
Query: 720 ILSIPAGRPIRVMKN 734
L ++
Sbjct: 348 ALCRALRETKNRLER 362
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.3 bits (113), Expect = 9e-06
Identities = 23/207 (11%), Positives = 55/207 (26%), Gaps = 31/207 (14%)
Query: 4 NNRLRQLHSSCILHQHTQSINRLQSPANTNPYPSKKTLKRHLNSKSRNKPKPAGDWDIRQ 63
R+++L + + + L P K + L +R P+ + + +
Sbjct: 38 QMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLAR 97
Query: 64 WNVAITTHMRNGCCDSALHVFNSMPRRSS--VSYNAMISGYLLNGQLDPARQVFDQMPQR 121
+ + A +S + S A LL QL A +
Sbjct: 98 LLQEAPGKLSLDV-EQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH--- 153
Query: 122 DLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRML 181
+ + +N ++ G+A+ G + +
Sbjct: 154 ---------------------HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 182 EK----NEISWNGLLAAYVQNGRIEEA 204
+ + +S+ L + +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGT 219
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.1 bits (110), Expect = 2e-05
Identities = 12/141 (8%), Positives = 37/141 (26%), Gaps = 12/141 (8%)
Query: 245 RDEVSWNTMITGYAQNNYLAEAQRLFE-------EAPVKDVFTWTAMVSGYVQNGKVDEA 297
+ + L A L + + + + A++ G+ + G E
Sbjct: 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKEL 184
Query: 298 RMIFDAMPEK----NTVSWNAMIAGYV-QTKRMDMARELFEAMTCKNVASWNTMITGYAQ 352
+ + + + +S+ A + Q + E M+ + +
Sbjct: 185 VYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244
Query: 353 SGEITHARNLFDRMPQHDCIS 373
+ ++ +
Sbjct: 245 EEDRATVLKAVHKVKPTFSLP 265
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.9 bits (99), Expect = 5e-04
Identities = 11/103 (10%), Positives = 31/103 (30%), Gaps = 12/103 (11%)
Query: 184 NEISWNGLLAAYVQNGRIEEACMLFESKANWE-------VVSWNSLMGGFVKQKRLGDAK 236
+ + ++ A L + +N++M G+ +Q +
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 237 WIFDRMPVR----DEVSWNTMITGYA-QNNYLAEAQRLFEEAP 274
++ + D +S+ + Q+ +R E+
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS 228
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 4e-06
Identities = 93/664 (14%), Positives = 179/664 (26%), Gaps = 220/664 (33%)
Query: 172 AARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKR 231
R+F +L K E E+V FV++
Sbjct: 63 GTLRLFWTLLSKQE-----------------------------EMVQ------KFVEEVL 87
Query: 232 LGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQN 291
+ K++ ++ E +M+T Y+ + RL+ + V V
Sbjct: 88 RINYKFLMSP--IKTEQRQPSMMT----RMYIEQRDRLYNDNQV--------FAKYNVSR 133
Query: 292 GK-VDEAR-MIFDAMPEKNTV---------SWNAMIAGYVQTKRMD--MARELFEAMTCK 338
+ + R + + P KN + +W + + ++ M ++F
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCKMDFKIF------ 185
Query: 339 NVASWNTMITGYAQSGE--ITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIE 396
W + S E + + L ++ + + + LR ++
Sbjct: 186 ----WLNL--KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 397 MKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGC---------FVGNAL 447
K Y L VL N+ + + F C V + L
Sbjct: 240 SKPYENCL------LVLL---NVQNAK--------AWNA-FNLSCKILLTTRFKQVTDFL 281
Query: 448 LVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD 507
S++ + L K + +P D
Sbjct: 282 SAATTTHISLDHHSMTLTP----------------------DEVKSLLL--KYLDCRPQD 317
Query: 508 ITMVGILSACSHTGLVEKGTEYFYSMNRDY-GVIPNSKHYTCMVDLLGRAGRLDEAQNLM 566
+ + RD N KH C +L
Sbjct: 318 LP----REVLTTNPRRLSI---IAESIRDGLATWDNWKHVNCD--------KLTTIIESS 362
Query: 567 KNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG-MYVLLSNLYAASGRW 625
N+ EP +++ L+ +F P +A +LLS + W
Sbjct: 363 LNV-LEPAEYR--------KMF--DRLS------VF---PPSAHIPTILLSLI------W 396
Query: 626 GDVSK--VRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGD-------------TLHPEKDR 670
DV K V + + K+ YS +E Q K T S+ LH
Sbjct: 397 FDVIKSDVMVVV-----NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---RS 448
Query: 671 I---YAYLEELE----FKLKQDGFVYSTKLVLH--DVGEEEKEHM-------LRYHSEKL 714
I Y + + D + YS + H ++ E+ + R+ +K+
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYS-HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 715 AVAYGILSIPAGRPIRVMKNLRVCEDCHNAIKHISKIVGRL-IILRDNNRFHHFSGGSCS 773
+G + ++ L+ + +I + ++ F +
Sbjct: 508 -RHDSTAWNASGSILNTLQQLKFYK------PYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 774 CGDY 777
C Y
Sbjct: 561 CSKY 564
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 1e-05
Identities = 75/518 (14%), Positives = 156/518 (30%), Gaps = 158/518 (30%)
Query: 6 RLRQLHSSCILHQHTQSINRLQSPANTNPYPSKKTLKRHLNSKSRNKPKPAGDWDIRQW- 64
+ Q S + + + +RL N N +K + R +P +RQ
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLY---NDNQVFAKYNVSR---------LQPY--LKLRQAL 144
Query: 65 -----NVAITTH-MRNGCCDS--ALHVFNSMPRRSSVSYNAMISGYLLN-GQLDPARQVF 115
+ + G + AL V S + + + + LN + V
Sbjct: 145 LELRPAKNVLIDGVL-GSGKTWVALDVCLSYKVQCKMDFKI----FWLNLKNCNSPETVL 199
Query: 116 D-------QMPQRDLVSWNVMISGYVRNKSLSAA-RNLFEMMPK-------RDVVSWNTM 160
+ Q+ + + +R S+ A R L + P +V N
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAK 257
Query: 161 LSGYAQNGYADAARRIFD---RML----EKNEISWNGLLAAYVQNGRIEEACMLF---ES 210
+A F+ ++L K + L AA + ++ M E
Sbjct: 258 A--------WNA----FNLSCKILLTTRFKQVT--DFLSAATTTHISLDHHSMTLTPDEV 303
Query: 211 K---ANW----------EVVSWNSL-MGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITG 256
K + EV++ N + + R G A W + D++ T+I
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL--TTIIES 361
Query: 257 YAQNNYLAEAQRLFEEAPV--KDV--------FTWTAMVSGYVQNGKVDEARMIFDAM-- 304
AE +++F+ V W ++ + ++ + +
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK--------SDVMVVVNKLHK 413
Query: 305 -------PEKNTVSWNAMIAGYVQTK-----RMDMARELFEAMTCKNVASWNTMIT---- 348
P+++T+S ++ Y++ K + R + + + +I
Sbjct: 414 YSLVEKQPKESTISIPSI---YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 349 -------GY-----AQSGEITHARNLF------DRMPQHDCISWAAI---------IAGY 381
G+ +T R +F ++ +HD +W A + Y
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 382 AQ-----SGYSEDSLRLFIE-MKRYGERLNRSPFTSVL 413
E + ++ + + E L S +T +L
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 7e-05
Identities = 84/575 (14%), Positives = 162/575 (28%), Gaps = 173/575 (30%)
Query: 171 DAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSW-NSLMGGFVKQ 229
D + I + E + I + + LF W ++S ++ FV++
Sbjct: 40 DMPKSILSKE-EIDHI--------IMSKDAVSGTLRLF-----WTLLSKQEEMVQKFVEE 85
Query: 230 KRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYV 289
+ K++ ++ E +M+T Y+ + RL+ + V V
Sbjct: 86 VLRINYKFLMSP--IKTEQRQPSMMT----RMYIEQRDRLYNDNQV--------FAKYNV 131
Query: 290 QNGK-VDEAR-MIFDAMPEKNTV---------SWNAMIAGYVQTKRMD--MARELFEAMT 336
+ + R + + P KN + +W + + ++ M ++F
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCKMDFKIF---- 185
Query: 337 CKNVASWNTMITGYAQSGE--ITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLF 394
W + S E + + L ++ + + + LR
Sbjct: 186 ------WLNL--KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 395 IEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGC---------FVGN 445
++ K Y L VL N+ + + F C V +
Sbjct: 238 LKSKPYENCL------LVLL---NVQNAKA--------WNA-FNLSCKILLTTRFKQVTD 279
Query: 446 ALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP 505
L S++ + L K + +P
Sbjct: 280 FLSAATTTHISLDHHSMTLTP----------------------DEVKSLLL--KYLDCRP 315
Query: 506 DDITMVGILSACSHTGLVEKGTEYFYSMNRDY-GVIPNSKHYTCMVDLLGRAGRLDEAQN 564
D+ + RD N KH C +L
Sbjct: 316 QDLP----REVLTTNPRRLSI---IAESIRDGLATWDNWKHVNCD--------KLTTIIE 360
Query: 565 LMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG-MYVLLSNLYAASG 623
N+ EP +++ L+ +F P +A +LLS +
Sbjct: 361 SSLNV-LEPAEYR--------KMF--DRLS------VF---PPSAHIPTILLSLI----- 395
Query: 624 RWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLK 683
W DV K + V NK+H +S+ + P++ I LE K+K
Sbjct: 396 -WFDVIK---------------SDVMVVVNKLHKYSLVE-KQPKESTISIPSIYLELKVK 438
Query: 684 QDGFVYSTKLVLHDVGEEEKEHMLRYHSEKLAVAY 718
+ + LH + + S+ L Y
Sbjct: 439 LEN-----EYALHRSIVDHYNIPKTFDSDDLIPPY 468
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 15/165 (9%), Positives = 48/165 (29%), Gaps = 19/165 (11%)
Query: 62 RQWNVAITTHMRNGCCDSALHVF-----NSMPRRSSVSYNAMISGYLLNGQLDPARQVFD 116
+ + D A +++ + + + Y A + + +++
Sbjct: 65 KLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL-YFAYADYEESRMKYEKVHSIYN 123
Query: 117 QM----PQRDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQ-----N 167
++ + + + R + + + R +F+ + + ++ A +
Sbjct: 124 RLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT-AALMEYYCS 182
Query: 168 GYADAARRIFDRMLE---KNEISWNGLLAAYVQNGRIEEACMLFE 209
A +IF+ L+ + +LFE
Sbjct: 183 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 227
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 27/192 (14%), Positives = 50/192 (26%), Gaps = 13/192 (6%)
Query: 446 ALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAG-----YARHGFGKDALMLFESMKT 500
+ + + + V NT Y AL +
Sbjct: 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS 129
Query: 501 VGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLD 560
+ V IL L K + + D ++ T V L +L
Sbjct: 130 LECMA---MTVQILLKLDRLDLARKELKKMQDQDEDA---TLTQLATAWVSLAAGGEKLQ 183
Query: 561 EAQNLMKNM--PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNL 618
+A + + M P G+ E AE + + + + + L L
Sbjct: 184 DAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVL 243
Query: 619 YAASGRWGDVSK 630
G+ +V+
Sbjct: 244 SQHLGKPPEVTN 255
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 778 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.86 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.71 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.71 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.67 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.66 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.65 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.64 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.6 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.59 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.58 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.56 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.52 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.47 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.46 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.45 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.44 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.42 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.42 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.4 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.4 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.39 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.38 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.37 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.37 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.36 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.35 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.32 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.31 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.3 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.3 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.3 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.29 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.29 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.29 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.28 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.22 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.22 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.21 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.2 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.19 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.16 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.15 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.15 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.14 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.13 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.13 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.12 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.11 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.09 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.08 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.07 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.06 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.03 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.96 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.95 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.91 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.9 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.89 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.89 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.89 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.86 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.85 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.82 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.78 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.73 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.72 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.72 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.72 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.7 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.68 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.67 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.62 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.61 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.6 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.58 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.57 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.57 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.55 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.55 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.54 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.52 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.49 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.48 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.48 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.47 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.43 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.43 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.42 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.42 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.41 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.4 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.4 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.39 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.37 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.37 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.34 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.33 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.31 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.28 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.28 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.27 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.26 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.26 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.25 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.25 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.23 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.23 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.22 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.2 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.18 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.18 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.16 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.16 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.16 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.13 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.13 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.12 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.11 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.11 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.1 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.1 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.1 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.1 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.08 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.06 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.05 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.04 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.02 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.02 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.01 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.01 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.99 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.99 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.96 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.93 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.93 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.9 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.89 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.89 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.85 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.85 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.84 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.78 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.78 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.77 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.75 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.74 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.74 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.73 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.72 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.71 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.69 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.68 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.67 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.64 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.64 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.61 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.6 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.6 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.59 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.58 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.58 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.56 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.5 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.5 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.48 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.43 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.37 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.34 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.31 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.3 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.2 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.16 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.98 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.92 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.86 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.85 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.76 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.6 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.53 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.41 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.41 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.38 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.33 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.29 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.24 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.06 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.92 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.89 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.88 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.8 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.7 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.73 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.69 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.63 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.56 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.3 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.52 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.45 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 90.9 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 90.87 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.8 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.53 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 90.16 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 89.99 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.98 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 89.93 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.78 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 89.17 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 86.84 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.44 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.39 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.9 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 80.9 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.6 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=392.23 Aligned_cols=485 Identities=12% Similarity=0.017 Sum_probs=344.1
Q ss_pred CChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcc--cCCcchHHHHHHHHHhcCCHHHHHHHHHhcc--
Q 004024 137 KSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRML--EKNEISWNGLLAAYVQNGRIEEACMLFESKA-- 212 (778)
Q Consensus 137 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~-- 212 (778)
|.+..+...|..++.+++..|+.++..|.+.|++++|+.+|++|. .||..++..++.+|.+.|++++|+++|+++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 146 (597)
T 2xpi_A 67 GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY 146 (597)
T ss_dssp ---------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG
T ss_pred CccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc
Confidence 333444444444444444555555555555555555555555543 3455555555555555555555555555552
Q ss_pred cCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcC
Q 004024 213 NWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNG 292 (778)
Q Consensus 213 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 292 (778)
..++.+++.++.+|.++|++++|.++|+++.+.+... ..+.+.+. ++.-...++.+|+.++.+|.+.|
T Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLM-------QDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-------CCSSCCHHHHHHHHHHHHHHHTT
T ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccccc-------cccccchhHHHHHHHHHHHHHcC
Confidence 2344445555555555555555555555332222000 00000000 00111224667777777777777
Q ss_pred ChHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHH--H-HHhhc----cccccHHHHHHHHHHhcCChhHHHHH
Q 004024 293 KVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARE--L-FEAMT----CKNVASWNTMITGYAQSGEITHARNL 362 (778)
Q Consensus 293 ~~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~--i-~~~~~----~~~~~~~~~Li~~y~k~g~~~~A~~~ 362 (778)
++++|+++|++|.+. +...+..+...+...+..+.+.. + +..+. .....+++.++.+|.++|++++|.++
T Consensus 215 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 215 NFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 777777777777642 33334444433333222211111 0 22222 22344567778899999999999999
Q ss_pred hhhCCC--CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCc
Q 004024 363 FDRMPQ--HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAG 440 (778)
Q Consensus 363 f~~m~~--~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 440 (778)
|+++.+ ++..+|+.++.+|.+.|++++|+++|++|...+ +.+..++..++.++...|++++|.+++..+.+.. +.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 999987 788999999999999999999999999998765 3367788889999999999999999999998654 667
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSAC 517 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~ 517 (778)
..+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ .++..++..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 88999999999999999999999998854 468899999999999999999999999999842 33678999999999
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHc
Q 004024 518 SHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-------PFEPD--AATWGALLGACRLY 588 (778)
Q Consensus 518 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~--~~~~~~Ll~a~~~~ 588 (778)
.+.|++++|.++|+.+.+.. ..+...|..++++|.+.|++++|.++++++ +..|+ ..+|..++.+|...
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 99999999999999998642 336888999999999999999999999887 55787 77999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 589 GKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 589 g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
|++++|+..++++++++|+++.+|..|+++|...|+|++|.+.++.+.+.
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999988763
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-41 Score=387.15 Aligned_cols=504 Identities=8% Similarity=-0.025 Sum_probs=301.2
Q ss_pred HhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCCChhHHHHHHhhCC--CCCcchHHHHHHHHHcCCChHHHHHHHHhc
Q 004024 103 LLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMP--KRDVVSWNTMLSGYAQNGYADAARRIFDRM 180 (778)
Q Consensus 103 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m 180 (778)
.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|. .||..+|+.++.+|.+.|++++|+.+|+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 143 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKE 143 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 344555555555555555556666666666666666666666666553 355555666666666666666666666665
Q ss_pred c--cCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHh
Q 004024 181 L--EKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYA 258 (778)
Q Consensus 181 ~--~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~ 258 (778)
. ++|..+++.++.+|.+.|++++|+++|+++...+.. ...+.+.+.. +.-.+.++.+|+.++.+|.
T Consensus 144 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~ 211 (597)
T 2xpi_A 144 DLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKLLMQ-------DGGIKLEASMCYLRGQVYT 211 (597)
T ss_dssp CGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------CC-------CSSCCHHHHHHHHHHHHHH
T ss_pred hccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----cccccccccc-------ccccchhHHHHHHHHHHHH
Confidence 2 455566666666666666666666666543322200 0000000000 0001223445555555555
Q ss_pred cCCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChHHHHHH---HHhCCCC----CcchHHHHHHHHhccCChHHH
Q 004024 259 QNNYLAEAQRLFEEAPVK---DVFTWTAMVSGYVQNGKVDEARMI---FDAMPEK----NTVSWNAMIAGYVQTKRMDMA 328 (778)
Q Consensus 259 ~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l---~~~m~~~----~~~t~~~ll~~~~~~~~~~~a 328 (778)
+.|++++|.++|++|... +...|..+...+...+..+.+... +..+... +..+|+.++..|.+.|++++|
T Consensus 212 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 291 (597)
T 2xpi_A 212 NLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHH
Confidence 555555555555544322 122233333322222211111100 1111111 223344445555555555555
Q ss_pred HHHHHhhc--cccccHHHHHHHHHHhcCChhHHHHHhhhCCC---CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcc
Q 004024 329 RELFEAMT--CKNVASWNTMITGYAQSGEITHARNLFDRMPQ---HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGER 403 (778)
Q Consensus 329 ~~i~~~~~--~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~ 403 (778)
.++++.+. ++++.+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|+.++|+.+|++|.... +
T Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 370 (597)
T 2xpi_A 292 EDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-P 370 (597)
T ss_dssp HHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-c
Confidence 55555555 25555555555556666666666655555532 244555666666666666666666666655321 2
Q ss_pred cCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHH
Q 004024 404 LNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIA 480 (778)
Q Consensus 404 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~ 480 (778)
.+..++..+...+.+.|++++|.+++..+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 449 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGM 449 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 234455555555666666666666666555532 34566788888888888888888888887743 46778888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhc---CCCCC--hHHHHHHHHHHhh
Q 004024 481 GYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDY---GVIPN--SKHYTCMVDLLGR 555 (778)
Q Consensus 481 ~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~y~~lv~~l~r 555 (778)
+|.+.|++++|+++|++|.+.. ..+..+|..+...+.+.|++++|.++|+.+.+.. +..|+ ..+|..++.+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 8888888888888888888742 2356788888888888888888888888886543 66787 7899999999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhh
Q 004024 556 AGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAA 621 (778)
Q Consensus 556 ~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~ 621 (778)
.|++++|.+.++++ ...| +..+|..|..+|...|+.++|...++++++++|+++..+..|+++|..
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999887 3345 688999999999999999999999999999999999999999999864
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=264.27 Aligned_cols=198 Identities=14% Similarity=0.164 Sum_probs=175.3
Q ss_pred HHHHHhhhCCCCC-----eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccc---------cHH
Q 004024 358 HARNLFDRMPQHD-----CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLA---------SLE 423 (778)
Q Consensus 358 ~A~~~f~~m~~~d-----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~---------~~~ 423 (778)
.+..+++++.++. ...++.+|.+|++.|+.++|+++|++|.+.|++||.+||+++|.+|+..+ .++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3444555555432 24588899999999999999999999999999999999999999998654 488
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 424 LGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD----KDVISWNTMIAGYARHGFGKDALMLFESMK 499 (778)
Q Consensus 424 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 499 (778)
.|.++++.|.+.|+.||..+||+||++|+++|++++|.++|++|.+ ||.++||+||.+|++.|+.++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999954 899999999999999999999999999999
Q ss_pred HCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhc
Q 004024 500 TVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRA 556 (778)
Q Consensus 500 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~ 556 (778)
+.|+.||..||+++|.+|++.|++++|.++|++|... ++.|+..+|+.+++.+...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999876 9999999999999998763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-25 Score=240.99 Aligned_cols=359 Identities=12% Similarity=0.087 Sum_probs=274.1
Q ss_pred HHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCC---CCCeehHHHHHHHHHhcCChHHHHH
Q 004024 226 FVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAP---VKDVFTWTAMVSGYVQNGKVDEARM 299 (778)
Q Consensus 226 ~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~ 299 (778)
+.+.|++++|.+.+..+. +.+...+..+...+.+.|++++|...++... ..+..+|..+...|.+.|++++|+.
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 344445555554444432 3345556666666777777777777766543 2345567777777777777777777
Q ss_pred HHHhCCC--C-CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCC--C-C
Q 004024 300 IFDAMPE--K-NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQ--H-D 370 (778)
Q Consensus 300 l~~~m~~--~-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d 370 (778)
.|+++.. | +..++..+..++...|++++|...+..+. +.+..++..+...|.+.|++++|.+.|+++.+ | +
T Consensus 89 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (388)
T 1w3b_A 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 7777653 3 44567777777777777777777777766 34455666777777777888888777777643 2 3
Q ss_pred eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 004024 371 CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVM 450 (778)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 450 (778)
..+|+.+...|.+.|++++|+..|+++...+ +.+...+..+...
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------------------p~~~~~~~~lg~~ 212 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD------------------------------------PNFLDAYINLGNV 212 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------------------------CCcHHHHHHHHHH
Confidence 4677777777888888888888887776532 2344556677888
Q ss_pred HHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHH
Q 004024 451 YCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 451 y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 526 (778)
|.+.|++++|...|++... .+..+|+.+...|...|++++|++.|+++.+ ..|+ ..++..+..++...|++++|
T Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999987743 3578899999999999999999999999998 5665 56788889999999999999
Q ss_pred HHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 527 TEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
.+.|+.+.+. .+++...+..+..++.+.|++++|.+.++++ ...|+ ..+|..+..++...|+++.|...+++++++
T Consensus 291 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 291 EDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999998864 3447788999999999999999999999987 45565 779999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHhhhcCC
Q 004024 605 EPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 605 ~p~~~~~y~~L~~~y~~~g~ 624 (778)
+|+++..|..++.+|...|+
T Consensus 369 ~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 369 SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHhHHHHHHHccC
Confidence 99999999999999987764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=255.10 Aligned_cols=200 Identities=13% Similarity=0.144 Sum_probs=173.1
Q ss_pred hHHHHHHHHHhhcCcccC-cccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC---------H
Q 004024 388 EDSLRLFIEMKRYGERLN-RSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGS---------V 457 (778)
Q Consensus 388 ~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~---------~ 457 (778)
..+..+.+++.+.++.+. ...++.+|++|++.|++++|.++++.|.+.|+.||..+||+||.+|+++|. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 445667778887776644 346788999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHHhccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHc
Q 004024 458 EEAYHAFEEIVD----KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSM 533 (778)
Q Consensus 458 ~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 533 (778)
++|.++|++|.. ||.++||+||.+|++.|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999954 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHc
Q 004024 534 NRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM---PFEPDAATWGALLGACRLY 588 (778)
Q Consensus 534 ~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~~~~~~~Ll~a~~~~ 588 (778)
.+. |+.||..+|++|+++|++.|++++|.+++++| ...|+..||+.++..++..
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 876 99999999999999999999999999999999 6899999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-24 Score=229.54 Aligned_cols=344 Identities=14% Similarity=0.125 Sum_probs=269.6
Q ss_pred HHHHhcCChHHHHHHHHhCCC--C-CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHH
Q 004024 286 SGYVQNGKVDEARMIFDAMPE--K-NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHA 359 (778)
Q Consensus 286 ~~~~~~g~~~~A~~l~~~m~~--~-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A 359 (778)
..+.+.|++++|+..+.++.+ | +...+..+...+...|++++|...+..+. +.+..++..+...|.+.|++++|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 345556666666666655542 2 34445555556666666666666666655 44556677777777777777777
Q ss_pred HHHhhhCCC--C-CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccc-cchHHHhcccccHHHHHHHHHHHHHc
Q 004024 360 RNLFDRMPQ--H-DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPF-TSVLSTCANLASLELGKQLHGQLVKV 435 (778)
Q Consensus 360 ~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~~a~~i~~~~~~~ 435 (778)
...|+++.+ | +..+|..+...|.+.|++++|+..|+++... .|+..+. ..+...+...|++++|...+..+.+.
T Consensus 87 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 777776642 3 2345777777777777777777777777653 3555433 33445566677777787777777765
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHH
Q 004024 436 GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMV 511 (778)
Q Consensus 436 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~ 511 (778)
. +.+..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++... +.|+ ..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHHH
Confidence 3 45677889999999999999999999999864 3567899999999999999999999999988 5675 56888
Q ss_pred HHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHc
Q 004024 512 GILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PF-EPDAATWGALLGACRLY 588 (778)
Q Consensus 512 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-~p~~~~~~~Ll~a~~~~ 588 (778)
.+..++...|++++|.+.|+.+.+. .| +...|..+..+|.+.|++++|.+.++++ .. +++..+|..+...+...
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999998763 44 4678999999999999999999999987 22 34678999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 589 GKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 589 g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
|+++.|...+++++++.|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998876
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-23 Score=230.18 Aligned_cols=334 Identities=12% Similarity=0.068 Sum_probs=233.9
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHhhCCC---CCeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhcc
Q 004024 246 DEVSWNTMITGYAQNNYLAEAQRLFEEAPV---KDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQT 322 (778)
Q Consensus 246 d~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~ 322 (778)
++..|..++..|.+.|++++|..+|+++.. .+..+|..+...|.+.|++++|+..|+++.+.+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------------- 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 444555555555555555555555554431 234445555555555555555555555443210
Q ss_pred CChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCe------eehhhHH------------HHHHhc
Q 004024 323 KRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDC------ISWAAII------------AGYAQS 384 (778)
Q Consensus 323 ~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~------~~~~~li------------~~~~~~ 384 (778)
+.+..++..+...|.+.|++++|.+.|+++.+.++ ..|..++ ..|.+.
T Consensus 91 --------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 91 --------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156 (450)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22334445555555555555555555555433221 3333333 335556
Q ss_pred CChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 004024 385 GYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAF 464 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f 464 (778)
|++++|+..|+++.... +.+..++..+..+|.++|++++|.+.|
T Consensus 157 ~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVC------------------------------------VWDAELRELRAECFIKEGEPRKAISDL 200 (450)
T ss_dssp TCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHHHHHTTCGGGGHHHH
T ss_pred CCHHHHHHHHHHHHHhC------------------------------------CCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666666665422 346677888999999999999999999
Q ss_pred HhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHH-HH------------HHHHhccCcHHHHHH
Q 004024 465 EEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMV-GI------------LSACSHTGLVEKGTE 528 (778)
Q Consensus 465 ~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~-~l------------l~a~~~~g~~~~a~~ 528 (778)
+++.+ .+..+|+.++..|...|++++|++.|+++.. ..|+..+.. .+ ..+|.+.|++++|.+
T Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 278 (450)
T 2y4t_A 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 278 (450)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98854 5788999999999999999999999999997 677765433 33 678999999999999
Q ss_pred HHHHchhhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 529 YFYSMNRDYGVIPN--SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 529 ~~~~m~~~~~~~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
+|+.+.+...-.|. ..+|.+++.++.+.|++++|++.++++ ...| +..+|..+..+|...|+++.|...+++++++
T Consensus 279 ~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 279 KYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999864222222 568999999999999999999999987 4455 5889999999999999999999999999999
Q ss_pred CCCCCchHHHHH------------HHhhhcC--CcchHHHHHHHHHhCCCccCCc
Q 004024 605 EPENAGMYVLLS------------NLYAASG--RWGDVSKVRLKMRDRGVKKVTG 645 (778)
Q Consensus 605 ~p~~~~~y~~L~------------~~y~~~g--~~~~a~~~~~~m~~~g~~k~~g 645 (778)
+|+++..+..|+ +.|...| ++.+..++++.+++..++..|.
T Consensus 359 ~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 359 NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999 6687778 4444455555555544444443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-21 Score=214.51 Aligned_cols=415 Identities=10% Similarity=0.014 Sum_probs=298.3
Q ss_pred HhhHHHHHHHhcCChhHHHHHHhhCC--CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC---CCeehHHHHHHHHHhcC
Q 004024 218 SWNSLMGGFVKQKRLGDAKWIFDRMP--VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV---KDVFTWTAMVSGYVQNG 292 (778)
Q Consensus 218 ~~~~li~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g 292 (778)
.+..+...+.+.|++++|...|+++. .||..+|..+...|.+.|++++|...|+++.+ .+..+|..+...|.+.|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 45566777888888888888888776 56777888888888888888888888876642 24557777888888888
Q ss_pred ChHHHHHHHHhCCCC---CcchHHHHHHHHhccCChHHHHHHHHhhc----cccccHHHH---HHHHHHhcCChhHHHHH
Q 004024 293 KVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFEAMT----CKNVASWNT---MITGYAQSGEITHARNL 362 (778)
Q Consensus 293 ~~~~A~~l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~----~~~~~~~~~---Li~~y~k~g~~~~A~~~ 362 (778)
++++|+..|+++... +......++..+........+.+.+..+. .++....+. .............+...
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 888888888776542 33344444444333333333322221111 000000000 00001111111111222
Q ss_pred hhhCCC---------C-CeeehhhHHHHHHh---cCChhHHHHHHHHHhh-----cCccc--------CcccccchHHHh
Q 004024 363 FDRMPQ---------H-DCISWAAIIAGYAQ---SGYSEDSLRLFIEMKR-----YGERL--------NRSPFTSVLSTC 416 (778)
Q Consensus 363 f~~m~~---------~-d~~~~~~li~~~~~---~g~~~~Al~l~~~m~~-----~g~~p--------d~~t~~~ll~a~ 416 (778)
+..... + +...|......+.. .|++++|+.+|+++.. ....| +..++..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 222111 1 12233334444443 8999999999999887 31122 234566677778
Q ss_pred cccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHH
Q 004024 417 ANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALM 493 (778)
Q Consensus 417 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~ 493 (778)
...|+++.|...+..+.+..-. ..++..+...|.+.|++++|...|+++.. .+...|..+...|...|++++|+.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 8899999999999999887643 88889999999999999999999998865 367789999999999999999999
Q ss_pred HHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 004024 494 LFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM--- 569 (778)
Q Consensus 494 l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--- 569 (778)
.|++..+ ..| +..++..+...+...|++++|..+|+.+.+.. +.+...+..+...|.+.|++++|.+.++++
T Consensus 326 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 326 DFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998 455 45678888899999999999999999988642 225678889999999999999999999877
Q ss_pred -CCCCC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 570 -PFEPD----AATWGALLGACRL---YGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 570 -~~~p~----~~~~~~Ll~a~~~---~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
|-.|+ ..+|..+...+.. .|+++.|...+++++++.|+++..+..++.+|...|++++|.+.++...+.
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 32333 4489999999999 999999999999999999999999999999999999999999999988763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=213.17 Aligned_cols=421 Identities=10% Similarity=0.049 Sum_probs=197.0
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHhcc---cCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCC---ccHhhHHHHHHHh
Q 004024 155 VSWNTMLSGYAQNGYADAARRIFDRML---EKNEISWNGLLAAYVQNGRIEEACMLFESKANWE---VVSWNSLMGGFVK 228 (778)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~ 228 (778)
..|..+...+.+.|++++|+..|+++. +.+..+|..+..+|...|++++|++.++++++.+ ...+..+...|..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 345555666666666666666666665 2345566666666666677777766666665432 2233444444444
Q ss_pred cCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCC------CeehHHHHHHHHHhcCChHHHHHHHH
Q 004024 229 QKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVK------DVFTWTAMVSGYVQNGKVDEARMIFD 302 (778)
Q Consensus 229 ~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~------d~~~~~~li~~~~~~g~~~~A~~l~~ 302 (778)
.|++++|...|+.+. .++...+..+..+...+...+|...++++... ........+..+....+.+.+...+.
T Consensus 106 ~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 444444444443221 11111222233333444445555555554321 11122333444444444444444444
Q ss_pred hCCCCCcc---hHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCe--------
Q 004024 303 AMPEKNTV---SWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDC-------- 371 (778)
Q Consensus 303 ~m~~~~~~---t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~-------- 371 (778)
.....+.. ....+...+...+ -......|++++|..+|+++.+.++
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~ 241 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATD-----------------------EGYLVANDLLTKSTDMYHSLLSANTVDDPLREN 241 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSH-----------------------HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhh-----------------------hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHH
Confidence 43332221 1111111111110 0000111345555555555443221
Q ss_pred --eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 004024 372 --ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLV 449 (778)
Q Consensus 372 --~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 449 (778)
.+|..+...+...|++++|+..|++.... .|+..++..+...+...|+++.|...+..+.+.. +.+
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~--------- 309 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEY--------- 309 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTC---------
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCC---------
Confidence 13444455666677777777777776653 2333334444444444455555555544444432 223
Q ss_pred HHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHH
Q 004024 450 MYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTE 528 (778)
Q Consensus 450 ~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~ 528 (778)
..+|..+...|...|++++|++.|++..+ ..|+ ...+..+...+...|++++|.+
T Consensus 310 ----------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 310 ----------------------PPTYYHRGQMYFILQDYKNAKEDFQKAQS--LNPENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 34444445555555555555555555544 2232 2344444445555555555555
Q ss_pred HHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHHc----------CC
Q 004024 529 YFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEP----DAATWGALLGACRLY----------GK 590 (778)
Q Consensus 529 ~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p----~~~~~~~Ll~a~~~~----------g~ 590 (778)
+|+.+.+.. +.+...+..+..++.+.|++++|.+.++++ |-.+ ....+..+...+... |+
T Consensus 366 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 366 FFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 555544321 112344555555555555555555555443 1111 111233333444444 66
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 591 TELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 591 ~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++.|...++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 444 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666665554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=211.38 Aligned_cols=240 Identities=11% Similarity=-0.031 Sum_probs=183.5
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 004024 372 ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMY 451 (778)
Q Consensus 372 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 451 (778)
..|..+...|...|++++|+..|+++.... |+..++..+...+...|+++.|...+..+.+.. +.+..++..+...|
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence 345555566666666666666666665543 334444455555566666666666666665543 44566778888999
Q ss_pred HhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHH
Q 004024 452 CKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGT 527 (778)
Q Consensus 452 ~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~ 527 (778)
.+.|++++|...|++..+ .+...|..+...|...|++++|++.|+++.+ ..| +..++..+...+...|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999998743 4677888999999999999999999999987 445 4567888888999999999999
Q ss_pred HHHHHchhhcCCCCC----hHHHHHHHHHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 004024 528 EYFYSMNRDYGVIPN----SKHYTCMVDLLGR---AGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAA 598 (778)
Q Consensus 528 ~~~~~m~~~~~~~p~----~~~y~~lv~~l~r---~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~ 598 (778)
++|+.+.+...-.|+ ...|..+...+.+ .|++++|.+.++++ ...| +..+|..+...+...|+.+.|...+
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999988764333333 4488899999999 99999999999887 3344 4778999999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHH
Q 004024 599 EVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 599 ~~~~~l~p~~~~~y~~L~ 616 (778)
+++++++|+++..+..+.
T Consensus 473 ~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 473 EESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHCSSHHHHHHHHH
T ss_pred HHHHHhccccHHHHHHHH
Confidence 999999999877776663
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-20 Score=204.50 Aligned_cols=353 Identities=14% Similarity=0.074 Sum_probs=223.5
Q ss_pred ccHhhHHHHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC---CCeehHHHHHHHHH
Q 004024 216 VVSWNSLMGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV---KDVFTWTAMVSGYV 289 (778)
Q Consensus 216 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~ 289 (778)
...+..+...|.+.|++++|..+|+++. +.+..+|..+...|.+.|++++|...|+++.. .+..+|..+...|.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 4578999999999999999999999876 56788999999999999999999999998763 35678999999999
Q ss_pred hcCChHHHHHHHHhCCCCC---c---chHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHh
Q 004024 290 QNGKVDEARMIFDAMPEKN---T---VSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLF 363 (778)
Q Consensus 290 ~~g~~~~A~~l~~~m~~~~---~---~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f 363 (778)
+.|++++|+..|+++.+.+ . .++..+...+... .+..+...|.+.|++++|...|
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999987642 2 4555554432111 1122333455556666666666
Q ss_pred hhCCC---CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCc
Q 004024 364 DRMPQ---HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAG 440 (778)
Q Consensus 364 ~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 440 (778)
+++.+ .+...|..+...|.+.|++++|+..|+++.... +.+
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------------------~~~ 210 (450)
T 2y4t_A 167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK------------------------------------NDN 210 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH------------------------------------CSC
T ss_pred HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------CCC
Confidence 55432 234455566666666666666666666655421 122
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTM------------IAGYARHGFGKDALMLFESMKTVGIKP 505 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~l------------i~~~~~~g~~~~Al~l~~~m~~~g~~p 505 (778)
..++..+...|.+.|++++|...|+++.. | +...|..+ ...|...|++++|++.|+++.+ +.|
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p 288 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEP 288 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCC
Confidence 33344444445555555555555544422 1 22223322 5666666777777777777666 445
Q ss_pred Ch-----hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHH
Q 004024 506 DD-----ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AAT 577 (778)
Q Consensus 506 d~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~ 577 (778)
+. ..+..+..++.+.|++++|..+++.+.+. .| +...|..+..+|.+.|++++|.+.++++ ...|+ ..+
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 42 24555666666777777777777666543 23 4566666777777777777777777665 44554 445
Q ss_pred HHHHHHH------------HHHcC-----ChHHHHHHHHH-HHhcCCCCCc----------hHHHHHHHhhhcCCcchH
Q 004024 578 WGALLGA------------CRLYG-----KTELAEKAAEV-IFEMEPENAG----------MYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 578 ~~~Ll~a------------~~~~g-----~~~~a~~~~~~-~~~l~p~~~~----------~y~~L~~~y~~~g~~~~a 628 (778)
|..+..+ +...| +.+.+.+.+++ .++..|++.. .+..+..+|...|+.+..
T Consensus 366 ~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 366 REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 5544422 22333 55677888876 7777787532 344555555555554443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-20 Score=209.02 Aligned_cols=428 Identities=10% Similarity=0.017 Sum_probs=205.8
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhHHHHHHhhCC---CCCcchHHHHHHHHH
Q 004024 92 SVSYNAMISGYLLNGQLDPARQVFDQMP---QRDLVSWNVMISGYVRNKSLSAARNLFEMMP---KRDVVSWNTMLSGYA 165 (778)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~ 165 (778)
...+..+...|.+.|++++|...|+++. +.+..+|..+..+|.+.|++++|++.|+++. ..++.+|..+...|.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3456666777777777777777777654 2355566666667777777777777766654 234455666666666
Q ss_pred cCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCC
Q 004024 166 QNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVR 245 (778)
Q Consensus 166 ~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (778)
+.|++++|+..|+.+. .+.......+..+...+...+|...++.++...+.. .+
T Consensus 105 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~-------------------------~~ 158 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGR-------------------------GS 158 (537)
T ss_dssp HHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred HcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccc-------------------------cc
Confidence 6666666666665332 111112222333344444455555555554431100 00
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCee---hHHHHHHHHHhc--------CChHHHHHHHHhCCCC---Ccc-
Q 004024 246 DEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVF---TWTAMVSGYVQN--------GKVDEARMIFDAMPEK---NTV- 310 (778)
Q Consensus 246 d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~---~~~~li~~~~~~--------g~~~~A~~l~~~m~~~---~~~- 310 (778)
........+..|....+.+.+...+......+.. .+..+...+... |++++|+.+|+++.+. +..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~ 238 (537)
T 3fp2_A 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238 (537)
T ss_dssp CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHH
T ss_pred cccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchh
Confidence 1111223334444555555555555555444332 222332222221 3556666666665542 111
Q ss_pred ------hHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhc
Q 004024 311 ------SWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQS 384 (778)
Q Consensus 311 ------t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~ 384 (778)
++..+...+...|++++|...+..+.. ..|+...|..+...|...
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESIN-----------------------------LHPTPNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------HCCCHHHHHHHHHHTCCS
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh-----------------------------cCCCchHHHHHHHHHHHh
Confidence 233333333444444444444444330 012233344444445555
Q ss_pred CChhHHHHHHHHHhhcCcccC-cccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004024 385 GYSEDSLRLFIEMKRYGERLN-RSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHA 463 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 463 (778)
|++++|+..|+++.... |+ ..++.. +...|.+.|++++|...
T Consensus 290 ~~~~~A~~~~~~~~~~~--~~~~~~~~~-----------------------------------l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLN--PEYPPTYYH-----------------------------------RGQMYFILQDYKNAKED 332 (537)
T ss_dssp SCCHHHHHHHHHHHHHC--TTCHHHHHH-----------------------------------HHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHhccC--CCCHHHHHH-----------------------------------HHHHHHhcCCHHHHHHH
Confidence 55555555555554422 22 111111 22223333333333333
Q ss_pred HHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcC-
Q 004024 464 FEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYG- 538 (778)
Q Consensus 464 f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 538 (778)
|++..+ .+...|..+...|...|++++|++.|+++.+ ..|+ ...+..+...+...|++++|.+.|+.+.+...
T Consensus 333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 333321 1233344444444444444444444444444 2222 22344444444444444444444444332210
Q ss_pred ---CCCChHHHHHHHHHHhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 539 ---VIPNSKHYTCMVDLLGRA----------GRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 539 ---~~p~~~~y~~lv~~l~r~----------g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
.......+..+..+|.+. |++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111122233445556666 8888888888776 2344 467888899999999999999999999999
Q ss_pred cCCCCCchHH
Q 004024 604 MEPENAGMYV 613 (778)
Q Consensus 604 l~p~~~~~y~ 613 (778)
+.|+++....
T Consensus 491 ~~~~~~~~~~ 500 (537)
T 3fp2_A 491 LARTMDEKLQ 500 (537)
T ss_dssp HC--CHHHHH
T ss_pred hCCCcHHHHH
Confidence 9998865544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=177.82 Aligned_cols=182 Identities=10% Similarity=0.047 Sum_probs=137.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhH-HH--
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDIT-MV-- 511 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t-~~-- 511 (778)
+.+..++..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+ ..|+... +.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~ 228 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHY 228 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHHHH
Confidence 34556677788888999999999999988755 4677888888999999999999999999887 4565433 22
Q ss_pred ----------HHHHHHhccCcHHHHHHHHHHchhhcCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 004024 512 ----------GILSACSHTGLVEKGTEYFYSMNRDYGVIPNS--KHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAAT 577 (778)
Q Consensus 512 ----------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~ 577 (778)
.+...+...|++++|...++.+.+...-.|.. ..|..+...+.+.|++++|.+.+++. ...| +..+
T Consensus 229 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 308 (359)
T 3ieg_A 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNA 308 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHH
Confidence 22456778888888888888877643222211 33556778888888999888888776 3345 5778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhh
Q 004024 578 WGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAA 621 (778)
Q Consensus 578 ~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~ 621 (778)
|..+...+...|+++.|...++++++++|+++.....|..++..
T Consensus 309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 309 LKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 88888888888999999999999999999888777777766543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-17 Score=173.74 Aligned_cols=298 Identities=11% Similarity=0.047 Sum_probs=213.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCC---CCeeehhhHHHHHHhcC
Q 004024 312 WNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQ---HDCISWAAIIAGYAQSG 385 (778)
Q Consensus 312 ~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g 385 (778)
+..+...+...|++++|...+..+. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|.+.|
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence 3444444555555555555555544 33445555566666666666666666665432 23355666677777777
Q ss_pred ChhHHHHHHHHHhhcCccc---CcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004024 386 YSEDSLRLFIEMKRYGERL---NRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYH 462 (778)
Q Consensus 386 ~~~~Al~l~~~m~~~g~~p---d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 462 (778)
++++|+..|++..... | +.... ....+.+.. ......+...|...|++++|.+
T Consensus 86 ~~~~A~~~~~~~~~~~--~~~~~~~~~------~~~l~~~~~----------------~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSN--PSEQEEKEA------ESQLVKADE----------------MQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp CHHHHHHHHHHHHTSC--CCHHHHHHH------HHHHHHHHH----------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred ChHHHHHHHHHHHhcC--CcccChHHH------HHHHHHHHH----------------HHHHHHHHHHHHHccCHHHHHH
Confidence 7777777777776532 3 11110 000011110 1122345678899999999999
Q ss_pred HHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcC
Q 004024 463 AFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYG 538 (778)
Q Consensus 463 ~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 538 (778)
.|+++.+ .+...|..+...|...|++++|++.++++.+ ..| +..++..+...+...|++++|.+.|+...+...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 142 FLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 9998854 4678899999999999999999999999998 455 556788888999999999999999999876422
Q ss_pred CCCChHHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 539 VIPNSKHYT------------CMVDLLGRAGRLDEAQNLMKNM-PFEPD-A----ATWGALLGACRLYGKTELAEKAAEV 600 (778)
Q Consensus 539 ~~p~~~~y~------------~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~----~~~~~Ll~a~~~~g~~~~a~~~~~~ 600 (778)
-. ...+. .+...+.+.|++++|.+.++++ ...|+ . ..|..+...+...|+++.|...+++
T Consensus 220 ~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 220 DH--KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp TC--HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cc--hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 22 22222 3367789999999999999887 33444 3 2355677889999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 601 IFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 601 ~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 298 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998876
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5.8e-15 Score=173.50 Aligned_cols=526 Identities=13% Similarity=0.112 Sum_probs=295.2
Q ss_pred HHHHHhhcCCchhhhHhhhhCCCC------ChhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCCChh
Q 004024 67 AITTHMRNGCCDSALHVFNSMPRR------SSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLS 140 (778)
Q Consensus 67 ~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 140 (778)
.+..|...|.+.+|+.+++++... +....|.|+.+-.+. +.....+...+.. .+...-+...+...|.++
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd---~~d~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD---NYDAPDIANIAISNELFE 1066 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh---hccHHHHHHHHHhCCCHH
Confidence 345566777777777666665422 224455555555544 3333333333332 222344555666667777
Q ss_pred HHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhh
Q 004024 141 AARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWN 220 (778)
Q Consensus 141 ~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 220 (778)
+|..+|++.... ....+.++ -..|++++|.++.++. .+..+|..+..++...|++++|.+.|.+. .+...|.
T Consensus 1067 EAf~IYkKa~~~-~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~ 1138 (1630)
T 1xi4_A 1067 EAFAIFRKFDVN-TSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYM 1138 (1630)
T ss_pred HHHHHHHHcCCH-HHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHH
Confidence 777777765311 11112222 1556677777666655 23556667777777777777777776554 4455666
Q ss_pred HHHHHHHhcCChhHHHHHHhhCC--CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHH
Q 004024 221 SLMGGFVKQKRLGDAKWIFDRMP--VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEAR 298 (778)
Q Consensus 221 ~li~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~ 298 (778)
-++..+.+.|++++|.+.+.... .++....+.++..|++.+++++..... ..++...|..+...|...|++++|.
T Consensus 1139 eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1139 EVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 67777777777777777775433 233333445667777777766433332 2334455666666777777777777
Q ss_pred HHHHhCCCCCcchHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHH
Q 004024 299 MIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAII 378 (778)
Q Consensus 299 ~l~~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li 378 (778)
.+|... ..|..+...+.+.|+++.|.+.++.. .+..+|..+..++...|++..|......+ ..+...+..++
T Consensus 1216 ~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~I-iv~~deLeeli 1287 (1630)
T 1xi4_A 1216 LLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHI-VVHADELEELI 1287 (1630)
T ss_pred HHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-hcCHHHHHHHH
Confidence 777664 36677777777777777777777665 34566666666666777777776665542 22333455677
Q ss_pred HHHHhcCChhHHHHHHHHHhhcC-cccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCC------chhHHHHHHHHH
Q 004024 379 AGYAQSGYSEDSLRLFIEMKRYG-ERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEA------GCFVGNALLVMY 451 (778)
Q Consensus 379 ~~~~~~g~~~~Al~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~------~~~~~~~Li~~y 451 (778)
.-|...|.+++|+.+++.-.... -..+.+|....+.+-.+.+.+.+..+.|..- ..+++ +..+|..++-.|
T Consensus 1288 ~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~lW~elv~LY 1365 (1630)
T 1xi4_A 1288 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLY 1365 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHHHHH
Confidence 77778888888888886654322 1111223333444444555555555554422 22222 566778888888
Q ss_pred HhcCCHHHHHHH-------------HHhccC--CChhHHHHHHHHHHHcC---------------ChHHHHHHHHHHHHC
Q 004024 452 CKCGSVEEAYHA-------------FEEIVD--KDVISWNTMIAGYARHG---------------FGKDALMLFESMKTV 501 (778)
Q Consensus 452 ~k~g~~~~A~~~-------------f~~m~~--~d~~~~~~li~~~~~~g---------------~~~~Al~l~~~m~~~ 501 (778)
.+-|+++.|... |..... .|+..|...+.-|..++ +.+.+.++|.+.
T Consensus 1366 ~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~--- 1442 (1630)
T 1xi4_A 1366 DKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV--- 1442 (1630)
T ss_pred HhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHc---
Confidence 888888888732 222211 36666777777776555 555555555421
Q ss_pred CCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhh------------c-CCCC----------ChHHHHHH-HHHHhhcC
Q 004024 502 GIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRD------------Y-GVIP----------NSKHYTCM-VDLLGRAG 557 (778)
Q Consensus 502 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~------------~-~~~p----------~~~~y~~l-v~~l~r~g 557 (778)
|--|-...|..-+. -.+...+.+|+ .+.|..+ | ++.. +..-+.-+ ..+|.+.|
T Consensus 1443 ~~l~lik~yl~~vq-~~n~~~Vneal--~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~ 1519 (1630)
T 1xi4_A 1443 KQLPLVKPYLRSVQ-NHNNKSVNESL--NNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNN 1519 (1630)
T ss_pred CChHHhHHHHHHHH-HhcchhhhHHH--HHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcC
Confidence 11222222211111 00111111111 0111100 0 0000 00001122 23455668
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHH
Q 004024 558 RLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKV 631 (778)
Q Consensus 558 ~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~ 631 (778)
+|+.|.++.++.+. |.--+.+....||.+.++.++.-..+. .+...|+...-.+...=+.|-+.++
T Consensus 1520 ~~~~ai~l~k~d~l------~~dAm~~a~~S~d~e~~e~ll~~F~~~--~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1520 RWKQSVELCKKDSL------YKDAMQYASESKDTELAEELLQWFLQE--EKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred cHHHHHHHHHhccC------HHHHHHHHHHcCCHHHHHHHHHHHHhc--CChhHHHHHHHHHhccCCchHHHHH
Confidence 89999888887753 334456677889999998888888777 5567788777777788888877765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-17 Score=175.45 Aligned_cols=319 Identities=14% Similarity=0.150 Sum_probs=137.2
Q ss_pred cCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhccCChHHHHHHHHhhc--
Q 004024 259 QNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMT-- 336 (778)
Q Consensus 259 ~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~-- 336 (778)
+.|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..+..+.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4556666666666664443 6666666666666666666666543 355566666666666666666666555554
Q ss_pred cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHh
Q 004024 337 CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTC 416 (778)
Q Consensus 337 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~ 416 (778)
.+++.+.+.|+.+|.|+|+++++.++|+. |+..+|+.+...|...|.+++|...|..+ ..|..+..++
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L 158 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTL 158 (449)
T ss_dssp ------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHH
Confidence 34456667777777777777776666643 55567777777777777777777777755 3566666777
Q ss_pred cccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 004024 417 ANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFE 496 (778)
Q Consensus 417 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~ 496 (778)
.++|+++.|.+.+..+ .++.+|..++.++...|+++.|......+. .++.-...++..|.+.|++++|+.+++
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777766665 266777777777777777777766666544 344444467777888888888888888
Q ss_pred HHHHCCCCCCh---hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC------ChHHHHHHHHHHhhcCCHHHHHHHHH
Q 004024 497 SMKTVGIKPDD---ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP------NSKHYTCMVDLLGRAGRLDEAQNLMK 567 (778)
Q Consensus 497 ~m~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~y~~lv~~l~r~g~~~eA~~~~~ 567 (778)
+... ..|.. .|..+++-+-.+.+.+.+.++.|.+- -+++| +..+|.-++.+|..-|.++.|...+-
T Consensus 232 ~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 232 AALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 7764 44432 24444444555566677777666532 35555 46778899999999999999888765
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 004024 568 NMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 568 ~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~ 607 (778)
+-| |++.--..+.....+-.|.|.-.++..-.++-.|.
T Consensus 307 ~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~ 344 (449)
T 1b89_A 307 NHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL 344 (449)
T ss_dssp HST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG
T ss_pred hCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH
Confidence 543 33333334445555667777666666666655553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-14 Score=170.22 Aligned_cols=465 Identities=12% Similarity=0.101 Sum_probs=336.1
Q ss_pred CCCcchHHHHHHHHHcCCChhHHH-H---HHhh------CCCCCcch----------HHHHHHHHHcCCChHH-HHHHHH
Q 004024 120 QRDLVSWNVMISGYVRNKSLSAAR-N---LFEM------MPKRDVVS----------WNTMLSGYAQNGYADA-ARRIFD 178 (778)
Q Consensus 120 ~~~~~~~~~li~~~~~~g~~~~A~-~---~f~~------m~~~d~~~----------~~~li~~~~~~g~~~~-A~~~~~ 178 (778)
..|+.++|+|...|...++-.+.. + .|+. ..++|+.. ---||...-++|.+.. |+-+.+
T Consensus 870 ~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~ 949 (1630)
T 1xi4_A 870 CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVR 949 (1630)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHH
Confidence 368889999999998765543321 1 0110 01233321 2334444444444432 222322
Q ss_pred hcccCCcchHHHHHHHHHhcCCHHHHHHHHHhcc------cCCccHhhHHHHHHHhcCChhHHHHHHhhCC-C-----CC
Q 004024 179 RMLEKNEISWNGLLAAYVQNGRIEEACMLFESKA------NWEVVSWNSLMGGFVKQKRLGDAKWIFDRMP-V-----RD 246 (778)
Q Consensus 179 ~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-----~d 246 (778)
+.|...|..++.- +-+.-+++.++.. ..++.--...+..|...|.+.+|.++++++. . .+
T Consensus 950 ---r~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n 1021 (1630)
T 1xi4_A 950 ---RKDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEH 1021 (1630)
T ss_pred ---hcCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccc
Confidence 2466666666622 1111222332211 2244445677888999999999999999987 2 23
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhccCChH
Q 004024 247 EVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMD 326 (778)
Q Consensus 247 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~~~~~ 326 (778)
....|.|+.+..+. +..+..++.++...-+ ...+...+.+.|.+++|..+|++.... ....+.++. ..++++
T Consensus 1022 ~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~~~-~~A~~VLie---~i~nld 1093 (1630)
T 1xi4_A 1022 RNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFDVN-TSAVQVLIE---HIGNLD 1093 (1630)
T ss_pred HHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcCCH-HHHHHHHHH---HHhhHH
Confidence 45667777776666 4566666665555333 556788899999999999999997532 222223322 778899
Q ss_pred HHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCc
Q 004024 327 MARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNR 406 (778)
Q Consensus 327 ~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~ 406 (778)
+|.++..++ .++.+|..+..++.+.|++++|.+.|.+. .|...|..++..+.+.|++++|++.|...++.. ++.
T Consensus 1094 rAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~ 1167 (1630)
T 1xi4_A 1094 RAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RES 1167 (1630)
T ss_pred HHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccc
Confidence 999998876 45778999999999999999999999775 666788889999999999999999999877644 444
Q ss_pred ccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcC
Q 004024 407 SPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHG 486 (778)
Q Consensus 407 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 486 (778)
...+.+..++++.+.++....+. + .++...+..+.+.|...|++++|...|... ..|..+...|.+.|
T Consensus 1168 ~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1168 YVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLG 1235 (1630)
T ss_pred cccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhC
Confidence 44445888999999888644432 2 345556667999999999999999999985 48999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 004024 487 FGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLM 566 (778)
Q Consensus 487 ~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~ 566 (778)
++++|++.+++. -+..+|..+-.+|...|.+..|...... +.-+++.+..++..|.+.|.+++|+.++
T Consensus 1236 e~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~Ll 1303 (1630)
T 1xi4_A 1236 EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITML 1303 (1630)
T ss_pred CHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999976 3568899999999999999999887643 3446778889999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHHc--CChHHHHHHHHHHHhcCC-----CCCchHHHHHHHhhhcCCcchHHH
Q 004024 567 KNM-PFEPD-AATWGALLGACRLY--GKTELAEKAAEVIFEMEP-----ENAGMYVLLSNLYAASGRWGDVSK 630 (778)
Q Consensus 567 ~~m-~~~p~-~~~~~~Ll~a~~~~--g~~~~a~~~~~~~~~l~p-----~~~~~y~~L~~~y~~~g~~~~a~~ 630 (778)
+.. +.+|. ...|.-|.-.+.+. +++.++.+.|..-..+.| ++...+.-+.-+|.+.|+|+.|..
T Consensus 1304 E~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1304 EAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 766 55554 44676666666555 466777777777777766 677789999999999999999984
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=176.17 Aligned_cols=278 Identities=12% Similarity=0.118 Sum_probs=113.7
Q ss_pred hcCCchhhhHhhhhCCCCChhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCCChhHHHHHHhhCCC-
Q 004024 73 RNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPK- 151 (778)
Q Consensus 73 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~- 151 (778)
+.|++++|...++....| .+|..|..++.+.|++++|.+.|.+. +|...|..++..+...|++++|++.++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 446677777777777444 47778888888888888888887654 4555777777777778888888886655542
Q ss_pred -CCcchHHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcC
Q 004024 152 -RDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQK 230 (778)
Q Consensus 152 -~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 230 (778)
+++.+.+.|+.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|+..|..+ ..|..|++++.+.|
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg 162 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLG 162 (449)
T ss_dssp ------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTT
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhc
Confidence 455677778888888888877777664 366677888888888888888888888766 46777788888888
Q ss_pred ChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCC---
Q 004024 231 RLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK--- 307 (778)
Q Consensus 231 ~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 307 (778)
++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|+.+++.....
T Consensus 163 ~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 163 EYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp CHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred cHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence 888888877777 367778888888888888888766665544 33333445777777778888887777776543
Q ss_pred --CcchHHHHHHHHhccCChHHHHHHHHhhc--------cccccHHHHHHHHHHhcCChhHHHHHhhh
Q 004024 308 --NTVSWNAMIAGYVQTKRMDMARELFEAMT--------CKNVASWNTMITGYAQSGEITHARNLFDR 365 (778)
Q Consensus 308 --~~~t~~~ll~~~~~~~~~~~a~~i~~~~~--------~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 365 (778)
..+|...++.+--+.+++.+..+.|..-+ ..+...|..++-.|.+-++++.|....-+
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 22233333333334456666666665544 14566777777777777777777665433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-16 Score=163.26 Aligned_cols=185 Identities=14% Similarity=0.059 Sum_probs=131.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHH
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILS 515 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~ 515 (778)
+...+..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~ 201 (330)
T 3hym_B 124 YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGV 201 (330)
T ss_dssp CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 344455666666666677777666666543 2345566666677777777777777777766 3343 445666666
Q ss_pred HHhccCcHHHHHHHHHHchhhcC-------CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYG-------VIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACR 586 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~ 586 (778)
.+...|++++|..+|+.+.+... .......+..+..+|.+.|++++|.+.+++. ...| +..+|..+...+.
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 281 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHS 281 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHH
Confidence 77777777777777776654321 1334678888899999999999999988876 2334 4678899999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh-hhcCCcc
Q 004024 587 LYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY-AASGRWG 626 (778)
Q Consensus 587 ~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y-~~~g~~~ 626 (778)
..|+.+.|...++++++++|+++..+..|+.+| ...|+.+
T Consensus 282 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 282 LMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999999999999999999988 4555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=170.40 Aligned_cols=189 Identities=12% Similarity=0.088 Sum_probs=147.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHH---------------HHHHHHHcCChHHHHHHHHHHHHC
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNT---------------MIAGYARHGFGKDALMLFESMKTV 501 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~---------------li~~~~~~g~~~~Al~l~~~m~~~ 501 (778)
+..++..+...|.+.|++++|.+.|+++.. | +...+.. .+..+...|++++|++.|+++.+
T Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~- 209 (368)
T 1fch_A 131 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR- 209 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHH-
Confidence 344555566666666666666666665533 1 1112211 13333488899999999999988
Q ss_pred CCCCC---hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 004024 502 GIKPD---DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DA 575 (778)
Q Consensus 502 g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~ 575 (778)
..|+ ..++..+...+...|++++|..+|+.+.+. .| +...|..+..++.+.|++++|.+.++++ ...| +.
T Consensus 210 -~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 285 (368)
T 1fch_A 210 -LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 285 (368)
T ss_dssp -HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred -hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 4555 567888888999999999999999988764 34 4678899999999999999999999887 3345 47
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----------CchHHHHHHHhhhcCCcchHHHHHH
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPEN-----------AGMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~-----------~~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
.+|..+..++...|+++.|...+++++++.|++ +..|..|+.+|...|++++|..+++
T Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 789999999999999999999999999999988 7889999999999999999998865
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-15 Score=158.70 Aligned_cols=259 Identities=12% Similarity=0.029 Sum_probs=199.2
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 004024 373 SWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYC 452 (778)
Q Consensus 373 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 452 (778)
.+..+...+...|++++|+.+|+++.... +.+...+..+...+...|+.++|...+..+.+.. +.+..++..+...|.
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 34444444555555555555555554432 1112222233444455555555555555555443 445677788899999
Q ss_pred hcC-CHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHH
Q 004024 453 KCG-SVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGT 527 (778)
Q Consensus 453 k~g-~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~ 527 (778)
..| ++++|.+.|++..+ .+...|..+...|...|++++|++.|+++.+ ..|+ ...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ--LMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHhhHHHHH
Confidence 999 99999999998865 3577899999999999999999999999998 4454 567777888999999999999
Q ss_pred HHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CC-------CCCHHHHHHHHHHHHHcCChHHHHH
Q 004024 528 EYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM----PF-------EPDAATWGALLGACRLYGKTELAEK 596 (778)
Q Consensus 528 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~-------~p~~~~~~~Ll~a~~~~g~~~~a~~ 596 (778)
++|+.+.+. .+.+...+..+..++.+.|++++|.+.++++ +- ..+..+|..+...+...|+++.|..
T Consensus 180 ~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 180 RFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999998753 2235788899999999999999999998776 10 2336799999999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 597 AAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 597 ~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.+++++++.|+++..+..++.+|...|++++|.+.++...+
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999886543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-14 Score=163.54 Aligned_cols=399 Identities=10% Similarity=0.088 Sum_probs=244.0
Q ss_pred CccHhhHHHHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC--CCeehHHHHHHH-H
Q 004024 215 EVVSWNSLMGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV--KDVFTWTAMVSG-Y 288 (778)
Q Consensus 215 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~-~ 288 (778)
++..|..++. +.+.|++++|+.+|+++. +.+...|..++..+.+.|++++|..+|++... |++..|...+.. .
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3456666666 356677777777777664 34555677777777777777777777776553 444455555542 2
Q ss_pred HhcCChHHHHH----HHHhCCC-----C-CcchHHHHHHHHhc---------cCChHHHHHHHHhhcc-ccc---cHHHH
Q 004024 289 VQNGKVDEARM----IFDAMPE-----K-NTVSWNAMIAGYVQ---------TKRMDMARELFEAMTC-KNV---ASWNT 345 (778)
Q Consensus 289 ~~~g~~~~A~~----l~~~m~~-----~-~~~t~~~ll~~~~~---------~~~~~~a~~i~~~~~~-~~~---~~~~~ 345 (778)
...|+.++|.+ +|++... + +...|...+..... .|+++.|+.+|+.++. |+. ..|..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~ 170 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 170 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 33455555543 4443321 1 33344444443322 3455555555555551 111 11211
Q ss_pred HHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHh------hcC---cccCc--------cc
Q 004024 346 MITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMK------RYG---ERLNR--------SP 408 (778)
Q Consensus 346 Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~------~~g---~~pd~--------~t 408 (778)
........|. ..+..++. ...+++.+|..++.++. +.. +.|+. ..
T Consensus 171 ~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 171 YNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 1111000000 00000000 12344555666555422 111 12221 11
Q ss_pred ccchHHHhcc----cccH----HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHHh
Q 004024 409 FTSVLSTCAN----LASL----ELGKQLHGQLVKVGFEAGCFVGNALLVMYCK-------CGSVE-------EAYHAFEE 466 (778)
Q Consensus 409 ~~~ll~a~~~----~~~~----~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k-------~g~~~-------~A~~~f~~ 466 (778)
|...+.-... .++. +.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+|++
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 1111111110 1121 35566777776652 5567788888888775 68877 89999998
Q ss_pred ccC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC
Q 004024 467 IVD---K-DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD--ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVI 540 (778)
Q Consensus 467 m~~---~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 540 (778)
..+ | +...|..++..+.+.|+.++|.++|+++.+ +.|+. ..|......+.+.|++++|.++|+...+. .
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~ 386 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---A 386 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---T
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---c
Confidence 764 3 577899999999999999999999999998 67764 36788888888899999999999988753 3
Q ss_pred CC-hHHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc----hH
Q 004024 541 PN-SKHYTCMVDL-LGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG----MY 612 (778)
Q Consensus 541 p~-~~~y~~lv~~-l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~----~y 612 (778)
|. ...|.....+ +...|+.++|.+++++. ...| ++.+|..++......|+.+.|..+++++++..|.++. .+
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 32 3333332222 33689999999998866 3334 4788999999988999999999999999998777655 66
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 613 VLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 613 ~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
...+......|+.+++.++.+++.+.
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66677788889999999998887653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-14 Score=160.79 Aligned_cols=333 Identities=13% Similarity=0.047 Sum_probs=202.8
Q ss_pred hHHHHHHHHHhc----CCCHHHHHHHHhhCCCC-CeehHHHHHHHHHh----cCChHHHHHHHHhCCCC-CcchHHHHHH
Q 004024 248 VSWNTMITGYAQ----NNYLAEAQRLFEEAPVK-DVFTWTAMVSGYVQ----NGKVDEARMIFDAMPEK-NTVSWNAMIA 317 (778)
Q Consensus 248 ~~~~~li~~y~~----~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~-~~~t~~~ll~ 317 (778)
..+..|...|.. .++.++|.+.|++..+. +...+..|...|.. .+++++|+..|++..+. +...+..+..
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 155 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGD 155 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444444444 44455555555443322 33344444444444 44555555555544333 3344444444
Q ss_pred HHhc----cCChHHHHHHHHhhc-cccccHHHHHHHHHHh----cCChhHHHHHhhhCCC-CCeeehhhHHHHHHhcCCh
Q 004024 318 GYVQ----TKRMDMARELFEAMT-CKNVASWNTMITGYAQ----SGEITHARNLFDRMPQ-HDCISWAAIIAGYAQSGYS 387 (778)
Q Consensus 318 ~~~~----~~~~~~a~~i~~~~~-~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~ 387 (778)
.|.. .++.++|.+.+.... ..+...+..|..+|.. .++.++|.+.|++..+ .+..++..+...|...
T Consensus 156 ~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g--- 232 (490)
T 2xm6_A 156 AYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFG--- 232 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC---
Confidence 4443 445555555555444 3334444455555554 4555555555544322 1222333333333320
Q ss_pred hHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHH
Q 004024 388 EDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCK----CGSVEEAYHA 463 (778)
Q Consensus 388 ~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~ 463 (778)
....++.++|...+....+.| +...+..|..+|.. .++.++|...
T Consensus 233 ----------------------------~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 233 ----------------------------IGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp ----------------------------SSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred ----------------------------CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 001334444444444444332 23344556666766 7888999999
Q ss_pred HHhccC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC---cHHHHHHHHHHch
Q 004024 464 FEEIVD-KDVISWNTMIAGYARH-----GFGKDALMLFESMKTVGIKPDDITMVGILSACSHTG---LVEKGTEYFYSMN 534 (778)
Q Consensus 464 f~~m~~-~d~~~~~~li~~~~~~-----g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~ 534 (778)
|++..+ .+...+..+...|... ++.++|++.|++..+.| +...+..+...+...| +.++|.++|+...
T Consensus 282 ~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 282 YRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 888765 4667777888888877 88999999999988865 3445566666666656 7889999998887
Q ss_pred hhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC
Q 004024 535 RDYGVIPNSKHYTCMVDLLGR----AGRLDEAQNLMKNMPFEPDAATWGALLGACRL----YGKTELAEKAAEVIFEMEP 606 (778)
Q Consensus 535 ~~~~~~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~----~g~~~~a~~~~~~~~~l~p 606 (778)
+. .+...+..|..+|.. .+++++|.+.+++.--..++..+..|...+.. .+|.++|...++++.+.+|
T Consensus 359 ~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 359 AK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 64 356778888888888 88999999999887323467788888888887 8999999999999999985
Q ss_pred C---CCchHHHHHHHhhh
Q 004024 607 E---NAGMYVLLSNLYAA 621 (778)
Q Consensus 607 ~---~~~~y~~L~~~y~~ 621 (778)
+ ++.....|+.++..
T Consensus 435 ~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 435 NLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHTTSCHH
T ss_pred CCcCCHHHHHHHHhcCHh
Confidence 4 77777777777664
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-14 Score=149.75 Aligned_cols=245 Identities=8% Similarity=-0.008 Sum_probs=147.4
Q ss_pred ccCChHHHHHHHHhhcc--cc--ccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHH
Q 004024 321 QTKRMDMARELFEAMTC--KN--VASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIE 396 (778)
Q Consensus 321 ~~~~~~~a~~i~~~~~~--~~--~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~ 396 (778)
..|++..|....+.+.. |+ ......+...|...|+++.|...++....++..++..+...+...|+.++|++.|++
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ 90 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDR 90 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 34555555555444331 11 122334556677777777777766665444555666666667777777777777777
Q ss_pred HhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHH
Q 004024 397 MKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWN 476 (778)
Q Consensus 397 m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~ 476 (778)
+...+..|+ +..++..+...|.+.|++++|.+.|++ ..+...|.
T Consensus 91 ll~~~~~P~----------------------------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~ 134 (291)
T 3mkr_A 91 EMSRSVDVT----------------------------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMA 134 (291)
T ss_dssp HHHSCCCCS----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHH
T ss_pred HHhcccCCC----------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHH
Confidence 665443343 344455667788888999999999888 45777888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHH---HHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHH
Q 004024 477 TMIAGYARHGFGKDALMLFESMKTVGIKPDDITMV---GILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLL 553 (778)
Q Consensus 477 ~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 553 (778)
.++..|.+.|+.++|++.|+++.+ ..|+..... +.+..+...|++++|..+|+.+.+.
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----------------- 195 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQD--QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK----------------- 195 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----------------
Confidence 888888899999999999998887 356643111 1112223345556666655555543
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcch-HHHHH
Q 004024 554 GRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGD-VSKVR 632 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~-a~~~~ 632 (778)
.++++.+|+.+..++...|+++.|+..++++++++|+++.++..++.++...|++++ +.+++
T Consensus 196 -----------------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~ 258 (291)
T 3mkr_A 196 -----------------CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL 258 (291)
T ss_dssp -----------------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred -----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 122344555555555555555555555555555556555555555555555555554 23454
Q ss_pred HHHHh
Q 004024 633 LKMRD 637 (778)
Q Consensus 633 ~~m~~ 637 (778)
+.+.+
T Consensus 259 ~~~~~ 263 (291)
T 3mkr_A 259 SQLKD 263 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-15 Score=162.81 Aligned_cols=276 Identities=12% Similarity=0.061 Sum_probs=147.1
Q ss_pred cCChHHHHH-HHHhCCCC-------CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHH
Q 004024 291 NGKVDEARM-IFDAMPEK-------NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHA 359 (778)
Q Consensus 291 ~g~~~~A~~-l~~~m~~~-------~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A 359 (778)
.|++++|+. .|.+.... +...+..+...+...|++++|...+..+. +.+..++..+...|.+.|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 456666666 66654421 23456666666777777777777777666 44556677777777777777777
Q ss_pred HHHhhhCCC---CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccc----------------hHHHhcccc
Q 004024 360 RNLFDRMPQ---HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTS----------------VLSTCANLA 420 (778)
Q Consensus 360 ~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~----------------ll~a~~~~~ 420 (778)
...|+++.+ .+..+|..+...|...|++++|+..|+++.... |+...... .+..+...|
T Consensus 118 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 777776542 345677777888888888888888888877643 33332221 122222444
Q ss_pred cHHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 421 SLELGKQLHGQLVKVGFEA-GCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMK 499 (778)
Q Consensus 421 ~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 499 (778)
++++|...+..+.+..-.. +.. +|..+...|...|++++|++.|+++.
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPD-------------------------------VQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHH-------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHH-------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444432111 234 44444444445555555555555444
Q ss_pred HCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----
Q 004024 500 TVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP---- 573 (778)
Q Consensus 500 ~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p---- 573 (778)
+ ..|+ ..++..+...+...|++++|..+|+.+.+.. +.+...|..+..+|.+.|++++|.+.++++ ...|
T Consensus 245 ~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 245 S--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp H--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred H--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 4 2232 2344444444555555555555555444321 113444555555555555555555555444 1111
Q ss_pred --------CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 574 --------DAATWGALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 574 --------~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
...+|..|..++...|+.+.|..++++.++
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred ccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 145677777777777777777666655443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4e-17 Score=186.25 Aligned_cols=133 Identities=14% Similarity=0.142 Sum_probs=119.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 004024 436 GFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIV-------DKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI 508 (778)
Q Consensus 436 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-------~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~ 508 (778)
....-..+||+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|+++|++|.+.|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 345567799999999999999999999998763 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCc-HHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 004024 509 TMVGILSACSHTGL-VEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 509 t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 569 (778)
||+++|.++++.|. .++|.++|++|..+ |+.||..+|+|++....|.+-++...++...+
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999999998 57899999999987 99999999999999888887666665554443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-14 Score=159.84 Aligned_cols=400 Identities=12% Similarity=0.111 Sum_probs=260.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcccCC---ccHhhHHHHHHHhcCChhHHHHHHhhCC--CCChhHHHHHHH-HH
Q 004024 184 NEISWNGLLAAYVQNGRIEEACMLFESKANWE---VVSWNSLMGGFVKQKRLGDAKWIFDRMP--VRDEVSWNTMIT-GY 257 (778)
Q Consensus 184 d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~-~y 257 (778)
|..+|..++. +.+.|++++|+.+|+++++.. ...|..++..+.+.|++++|+.+|++.. .|++..|...+. ..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3445555555 244555556665555555432 2345555666666666666666666654 357777887775 33
Q ss_pred hcCCCHHHHHH----HHhhCC-----C-CCeehHHHHHHHHHh---------cCChHHHHHHHHhCCCC-Cc---chHHH
Q 004024 258 AQNNYLAEAQR----LFEEAP-----V-KDVFTWTAMVSGYVQ---------NGKVDEARMIFDAMPEK-NT---VSWNA 314 (778)
Q Consensus 258 ~~~g~~~~A~~----~f~~m~-----~-~d~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~-~~---~t~~~ 314 (778)
...|+.++|++ +|++.. . .+...|...+....+ .|++++|..+|++.... +. ..|..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~ 170 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 170 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 45677776665 676542 1 355678888877655 78999999999998763 21 22222
Q ss_pred HHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhh-------CC------CCC--------eee
Q 004024 315 MIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDR-------MP------QHD--------CIS 373 (778)
Q Consensus 315 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~-------m~------~~d--------~~~ 373 (778)
........+. ..+..++. .+.++++.|+.++.. +. .|+ ...
T Consensus 171 ~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 171 YNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 2211111110 01111111 122334444443332 11 111 134
Q ss_pred hhhHHHHHHhc----CCh----hHHHHHHHHHhhcCcccC-cccccchHHHhcc-------cccHH-------HHHHHHH
Q 004024 374 WAAIIAGYAQS----GYS----EDSLRLFIEMKRYGERLN-RSPFTSVLSTCAN-------LASLE-------LGKQLHG 430 (778)
Q Consensus 374 ~~~li~~~~~~----g~~----~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~-------~~~~~-------~a~~i~~ 430 (778)
|...+.-...+ ++. ++|+.+|++.... .|+ ...|......+.+ .|+++ .|..++.
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 55554332222 222 3677888888764 343 3344444444443 67776 8899998
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004024 431 QLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DV-ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD 506 (778)
Q Consensus 431 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~-~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd 506 (778)
..++.-.+.+..++..++..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.++|.++|++..+. .|+
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~ 388 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ART 388 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTC
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCC
Confidence 888643466788999999999999999999999998854 3 33 58999999999999999999999999874 444
Q ss_pred -hhHHHHHHHH-HhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHH
Q 004024 507 -DITMVGILSA-CSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD--AATW 578 (778)
Q Consensus 507 -~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~--~~~~ 578 (778)
...|...... +...|+.++|..+|+...+..+ -+...|..+++.+.+.|+.++|..++++. |..|+ ..+|
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p--~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 2233332222 2358999999999999886532 25788999999999999999999999886 34443 4589
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 579 GALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 579 ~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
...+.....+|+.+.+..+.+++.+..|++
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 999999999999999999999999998853
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-15 Score=160.27 Aligned_cols=231 Identities=12% Similarity=0.072 Sum_probs=190.4
Q ss_pred CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 004024 370 DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLV 449 (778)
Q Consensus 370 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 449 (778)
+...|..+...+.+.|++++|+..|+++.... +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------------------------p~~~~~~~~lg~ 107 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD------------------------------------PGDAEAWQFLGI 107 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------cCCHHHHHHHHH
Confidence 44567778888888888888888888877642 335567788899
Q ss_pred HHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhH-----------HHHHHH
Q 004024 450 MYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDIT-----------MVGILS 515 (778)
Q Consensus 450 ~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t-----------~~~ll~ 515 (778)
.|.+.|++++|...|+++.+ .+..+|..+...|...|++++|++.|+++.+ +.|+... +..+..
T Consensus 108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHCC----------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHH
Confidence 99999999999999998854 4678899999999999999999999999988 4565332 223467
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTEL 593 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~ 593 (778)
.+...|++++|.++|+.+.+...-.++...+..+..+|.+.|++++|.+.++++ ...| +..+|..+..++...|+++.
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 889999999999999999876443336889999999999999999999999887 3344 57899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 594 AEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 594 a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
|...+++++++.|+++.++..++.+|...|++++|.+.++.+.+.
T Consensus 266 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 266 AVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999888753
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-15 Score=160.41 Aligned_cols=223 Identities=13% Similarity=0.117 Sum_probs=130.2
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCC---CCeeehhhHHHHH
Q 004024 308 NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQ---HDCISWAAIIAGY 381 (778)
Q Consensus 308 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~ 381 (778)
+...+..+...+...|++++|...+..+. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34446666666777777777777777666 45566777777778888888888888777643 3456788888888
Q ss_pred HhcCChhHHHHHHHHHhhcCcccCccc-----------ccchHHHhcccccHHHHHHHHHHHHHcCCC-CchhHHHHHHH
Q 004024 382 AQSGYSEDSLRLFIEMKRYGERLNRSP-----------FTSVLSTCANLASLELGKQLHGQLVKVGFE-AGCFVGNALLV 449 (778)
Q Consensus 382 ~~~g~~~~Al~l~~~m~~~g~~pd~~t-----------~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~Li~ 449 (778)
.+.|++++|+..|+++.... |+... +..+...+...|++++|...+..+.+..-. .+..++..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 88888888888888887643 32211 112234445555555555555555554311 14455555555
Q ss_pred HHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHH
Q 004024 450 MYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEK 525 (778)
Q Consensus 450 ~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~ 525 (778)
.|.+.|++++|.+.|++..+ .+..+|+.+...|...|++++|++.|+++.+ +.|+ ..++..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHH
Confidence 66666666666666655432 2445555555556666666666666655555 3343 3344455555555555555
Q ss_pred HHHHHHHch
Q 004024 526 GTEYFYSMN 534 (778)
Q Consensus 526 a~~~~~~m~ 534 (778)
|..+|+.+.
T Consensus 300 A~~~~~~al 308 (365)
T 4eqf_A 300 AVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-17 Score=186.92 Aligned_cols=154 Identities=12% Similarity=0.089 Sum_probs=117.9
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 004024 372 ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMY 451 (778)
Q Consensus 372 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 451 (778)
++||+||.+|++.|+.++|.++|.+|.+. .+.|+.||+.+||+||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m--------------------------------~~kG~~PdvvTYNtLI~Gl 175 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQ--------------------------------RQKRKLLTLDMYNAVMLGW 175 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHS--------------------------------HHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------------------------------hhcCCCCCHhHHHHHHHHH
Confidence 57888888888888888888888887642 2345677888888999999
Q ss_pred HhcCCHHHHHHHHHhccC----CChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHH
Q 004024 452 CKCGSVEEAYHAFEEIVD----KDVISWNTMIAGYARHGFG-KDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 452 ~k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~-~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a 526 (778)
|+.|++++|.++|++|.+ ||++|||+||.++++.|+. ++|.++|++|.+.|+.||.+||++++.++.+.+.++..
T Consensus 176 ck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 999999999999999854 8999999999999999985 78999999999999999999999999888776555544
Q ss_pred HHHHHHchhhcCCCCChHHHHHHHHHHhhcC
Q 004024 527 TEYFYSMNRDYGVIPNSKHYTCMVDLLGRAG 557 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g 557 (778)
.+++-.+.-.+.-.|.+.+...|.|+|.+.+
T Consensus 256 rkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp GGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 4432222111111122445556788888766
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-14 Score=162.49 Aligned_cols=217 Identities=10% Similarity=0.033 Sum_probs=127.2
Q ss_pred ccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHH------------
Q 004024 420 ASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYAR------------ 484 (778)
Q Consensus 420 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~------------ 484 (778)
++.++|.+.+..+.+.. +.+..++..+...|.+.|++++|...|++..+ | +..+|..+...|..
T Consensus 227 ~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~ 305 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENG 305 (472)
T ss_dssp ---CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444555554444433 34455566666677777777777777766543 2 34455555444432
Q ss_pred -------cCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCCh--HHHHHHHH-HH
Q 004024 485 -------HGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNS--KHYTCMVD-LL 553 (778)
Q Consensus 485 -------~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lv~-~l 553 (778)
.+..++|+..|++..+ ..|+ ..++..+...+...|++++|.++|+...+. ...|.. ..+..+.. .+
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHH
Confidence 2345778888888877 4554 456778888999999999999999987653 222211 12233333 23
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHH
Q 004024 554 GRAGRLDEAQNLMKNM-PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVR 632 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~ 632 (778)
...|+.++|++.+++. .+.|+...+...+ +.++.++++.++.+|+++.+|..|+.+|...|++++|.+.+
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHCCCHHHHHHHHHHHHhcCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4678999999998876 5677755444333 44577888999999999999999999999999999999999
Q ss_pred HHHHhCCCccCCceeEE
Q 004024 633 LKMRDRGVKKVTGYSWL 649 (778)
Q Consensus 633 ~~m~~~g~~k~~g~s~i 649 (778)
++..+.|-.-....+|+
T Consensus 454 ~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 454 ERGLESGSLIPSASSWN 470 (472)
T ss_dssp -----------------
T ss_pred HHHHhcCCCCCcHhhcC
Confidence 98877664433344554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-13 Score=153.82 Aligned_cols=353 Identities=11% Similarity=0.026 Sum_probs=250.6
Q ss_pred CChhHHHHHHHHHhc----CCCHHHHHHHHhhCCC-CCeehHHHHHHHHHh----cCChHHHHHHHHhCCCC-CcchHHH
Q 004024 245 RDEVSWNTMITGYAQ----NNYLAEAQRLFEEAPV-KDVFTWTAMVSGYVQ----NGKVDEARMIFDAMPEK-NTVSWNA 314 (778)
Q Consensus 245 ~d~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~-~~~t~~~ 314 (778)
.|+..+..|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|+..|++..+. +...+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 116 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN 116 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 355566666666666 6777777777766543 355566777777777 77777777777776554 5556666
Q ss_pred HHHHHhc----cCChHHHHHHHHhhc-cccccHHHHHHHHHHh----cCChhHHHHHhhhCCC-CCeeehhhHHHHHHhc
Q 004024 315 MIAGYVQ----TKRMDMARELFEAMT-CKNVASWNTMITGYAQ----SGEITHARNLFDRMPQ-HDCISWAAIIAGYAQS 384 (778)
Q Consensus 315 ll~~~~~----~~~~~~a~~i~~~~~-~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~ 384 (778)
+...|.. .+++++|...+.... ..++..+..|..+|.. .++.++|.+.|++..+ .+..++..+...|.+
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~- 195 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSR- 195 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-
Confidence 6666665 566777777766665 3444555556666655 4555666665555432 233344444444443
Q ss_pred CChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHH
Q 004024 385 GYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCK----CGSVEEA 460 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A 460 (778)
.....++.++|...+....+.| +......|..+|.. .++.++|
T Consensus 196 ------------------------------g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 196 ------------------------------GLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp ------------------------------TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred ------------------------------CCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 0000344445555554444443 34556667778876 7899999
Q ss_pred HHHHHhccC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc-----CcHHHHHHHH
Q 004024 461 YHAFEEIVD-KDVISWNTMIAGYAR----HGFGKDALMLFESMKTVGIKPDDITMVGILSACSHT-----GLVEKGTEYF 530 (778)
Q Consensus 461 ~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~-----g~~~~a~~~~ 530 (778)
.+.|++..+ .+..++..+...|.. .++.++|++.|++..+.| +...+..+...+... ++.++|.++|
T Consensus 243 ~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 243 RVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 999998865 567788888888888 899999999999998764 445666666677766 8999999999
Q ss_pred HHchhhcCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHh
Q 004024 531 YSMNRDYGVIPNSKHYTCMVDLLGRAG---RLDEAQNLMKNMPFEPDAATWGALLGACRL----YGKTELAEKAAEVIFE 603 (778)
Q Consensus 531 ~~m~~~~~~~p~~~~y~~lv~~l~r~g---~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~----~g~~~~a~~~~~~~~~ 603 (778)
....+. + +...+..+..+|.+.| +.++|.+.+++.--..++..|..|...+.. .+|.++|...++++.+
T Consensus 320 ~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 320 TKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 998764 2 4566777888887767 789999999887333578889999999988 8999999999999988
Q ss_pred cCCCCCchHHHHHHHhhh----cCCcchHHHHHHHHHhCCC
Q 004024 604 MEPENAGMYVLLSNLYAA----SGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 604 l~p~~~~~y~~L~~~y~~----~g~~~~a~~~~~~m~~~g~ 640 (778)
.. ++..+..|+.+|.. .++.++|.+.++...+.|.
T Consensus 396 ~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 396 QG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 64 57889999999998 8999999999999887653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=151.44 Aligned_cols=256 Identities=11% Similarity=-0.024 Sum_probs=186.3
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 004024 373 SWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYC 452 (778)
Q Consensus 373 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 452 (778)
.|..+...+.+.|++++|+.+|+++.... +.+..++..+..++...|+++.|...+..+.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34444444555555555555555554432 1122233334444455555555555555555442 445667777888889
Q ss_pred hcCCHHHHHHHHHhccC--C-ChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHH
Q 004024 453 KCGSVEEAYHAFEEIVD--K-DVISWNTM--------------IA-GYARHGFGKDALMLFESMKTVGIKP-DDITMVGI 513 (778)
Q Consensus 453 k~g~~~~A~~~f~~m~~--~-d~~~~~~l--------------i~-~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~l 513 (778)
+.|++++|.+.|+++.+ | +...+..+ .. .+...|++++|++.++++.+. .| +...+..+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 178 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHASL 178 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHH
Confidence 99999999999888754 2 23333333 22 367788999999999999884 45 56678888
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 004024 514 LSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKT 591 (778)
Q Consensus 514 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~ 591 (778)
...+...|++++|.++++.+.+.. +.+...+..+..++.+.|++++|.+.++++ ...| +..+|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 889999999999999999987642 235778899999999999999999999886 3344 477899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CCchHHHHHHHhhhcCCcchHHHHHHH
Q 004024 592 ELAEKAAEVIFEMEPE------------NAGMYVLLSNLYAASGRWGDVSKVRLK 634 (778)
Q Consensus 592 ~~a~~~~~~~~~l~p~------------~~~~y~~L~~~y~~~g~~~~a~~~~~~ 634 (778)
+.|...+++++++.|+ ++..+..++.+|...|++++|.++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999999 788999999999999999999988753
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=145.36 Aligned_cols=250 Identities=14% Similarity=0.076 Sum_probs=136.2
Q ss_pred HHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCC---CCeeehhhHHHHHHhcCC
Q 004024 313 NAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQ---HDCISWAAIIAGYAQSGY 386 (778)
Q Consensus 313 ~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~ 386 (778)
......+...|++++|..+++.+. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|+
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence 333344444444444444444443 23334444555555555555555555554432 233455566666666666
Q ss_pred hhHHHHHHHHHhhcCcccCcccccchH--------------H--HhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 004024 387 SEDSLRLFIEMKRYGERLNRSPFTSVL--------------S--TCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVM 450 (778)
Q Consensus 387 ~~~Al~l~~~m~~~g~~pd~~t~~~ll--------------~--a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 450 (778)
+++|+..|+++... .|+.......+ . .+...|++++|...+..+.+.. +.+..++..+...
T Consensus 105 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 181 (327)
T 3cv0_A 105 ANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVL 181 (327)
T ss_dssp HHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 66666666666653 23322222221 2 2556667777777777666554 3355666667777
Q ss_pred HHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHH
Q 004024 451 YCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 451 y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 526 (778)
|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|++.|+++.+ ..|+ ..++..+...+...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHHH
Confidence 7777777777777776543 3455666777777777777777777777666 3343 44555555666666666666
Q ss_pred HHHHHHchhhcCCCC----------ChHHHHHHHHHHhhcCCHHHHHHHHH
Q 004024 527 TEYFYSMNRDYGVIP----------NSKHYTCMVDLLGRAGRLDEAQNLMK 567 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p----------~~~~y~~lv~~l~r~g~~~eA~~~~~ 567 (778)
.++|+.+.+...-.+ +...|..+..++.+.|+.++|.++++
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666665543211100 23444455555555555555555544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-13 Score=152.68 Aligned_cols=380 Identities=12% Similarity=0.003 Sum_probs=195.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHH-hhCCCCChhHHHHHHHHHhcCCCH
Q 004024 185 EISWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIF-DRMPVRDEVSWNTMITGYAQNNYL 263 (778)
Q Consensus 185 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~d~~~~~~li~~y~~~g~~ 263 (778)
...|+.|...+...|+.++|++.|.++++... ... ........++|+.+...|...|++
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~--------------------~~~~~~~~~~~~~~~~nla~~y~~~g~~ 110 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQ--------------------QEHADQAEIRSLVTWGNYAWVYYHMGRL 110 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------------HHSGGGCTTTTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--------------------hcCccccchHHHHHHHHHHHHHHHcCCh
Confidence 45678888888888888888888876543100 000 000012234455555555555555
Q ss_pred HHHHHHHhhCC-------CC----CeehHHHHHHHHHhc--CChHHHHHHHHhCCC--C-CcchHHHHHHH---HhccCC
Q 004024 264 AEAQRLFEEAP-------VK----DVFTWTAMVSGYVQN--GKVDEARMIFDAMPE--K-NTVSWNAMIAG---YVQTKR 324 (778)
Q Consensus 264 ~~A~~~f~~m~-------~~----d~~~~~~li~~~~~~--g~~~~A~~l~~~m~~--~-~~~t~~~ll~~---~~~~~~ 324 (778)
++|...|++.. .+ ...+++.+..++... +++++|+..|++..+ | +...+..+..+ +...++
T Consensus 111 ~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~ 190 (472)
T 4g1t_A 111 SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP 190 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH
Confidence 55555554321 11 122344443344433 356677777766643 3 34444444333 334455
Q ss_pred hHHHHHHHHhhc---cccccHHHHHHHHHHh----cCChhHHHHHhhhCCC---CCeeehhhHHHHHHhcCChhHHHHHH
Q 004024 325 MDMARELFEAMT---CKNVASWNTMITGYAQ----SGEITHARNLFDRMPQ---HDCISWAAIIAGYAQSGYSEDSLRLF 394 (778)
Q Consensus 325 ~~~a~~i~~~~~---~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~ 394 (778)
.++|.+.+..++ +.+..++..+...+.+ .|+.++|.+.|++... .+...|..+...|.+.|++++|+..|
T Consensus 191 ~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 270 (472)
T 4g1t_A 191 SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELL 270 (472)
T ss_dssp CCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 566666666655 3444455555444443 3566777777776542 34456777777888888888888888
Q ss_pred HHHhhcCcccCcccc-cchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---C
Q 004024 395 IEMKRYGERLNRSPF-TSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---K 470 (778)
Q Consensus 395 ~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~ 470 (778)
.+..+. .|+.... ..+...+... +... ... ....+.......+..+.|...|++..+ .
T Consensus 271 ~~al~~--~p~~~~~~~~lg~~y~~~-----~~~~----~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 332 (472)
T 4g1t_A 271 KKALEY--IPNNAYLHCQIGCCYRAK-----VFQV----MNL-------RENGMYGKRKLLELIGHAVAHLKKADEANDN 332 (472)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHHHH-----HHHH----HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHh--CCChHHHHHHHHHHHHHH-----HHHh----hhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc
Confidence 887763 3543321 1111111100 0000 000 000111111122345677777776643 4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhH----HHHHHH-HHhccCcHHHHHHHHHHchhhcCCCCChHH
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDIT----MVGILS-ACSHTGLVEKGTEYFYSMNRDYGVIPNSKH 545 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t----~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 545 (778)
+..+|..+...|...|++++|++.|++..+. .|+... +..+.. ...+.|+.++|++.|....+ +.|+...
T Consensus 333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~ 407 (472)
T 4g1t_A 333 LFRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSRE 407 (472)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHH
T ss_pred hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHH
Confidence 5667888999999999999999999999884 444322 222222 34578999999999988764 4565433
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 546 YTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 546 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
.... .+.+.+++++. ...| ++.+|..|...+...|+.++|...+++++++.|.+|.+..-++
T Consensus 408 ~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 408 KEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2222 22333333332 2234 5779999999999999999999999999999999887766554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-13 Score=138.46 Aligned_cols=242 Identities=9% Similarity=-0.025 Sum_probs=151.5
Q ss_pred hcCCCHHHHHHHHhhCCCCCe----ehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhccCChHHHHHHHH
Q 004024 258 AQNNYLAEAQRLFEEAPVKDV----FTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFE 333 (778)
Q Consensus 258 ~~~g~~~~A~~~f~~m~~~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~ 333 (778)
...|++..|...+++....++ .....+..+|...|++++|+..++....++..++..+...+...++.++|.+.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~ 89 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELD 89 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 345677777777766554332 2334556677777777777776665433355666677777777777777777777
Q ss_pred hhc-----cccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCccc
Q 004024 334 AMT-----CKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSP 408 (778)
Q Consensus 334 ~~~-----~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t 408 (778)
.+. +.+..++..+...|.+.|++++|.+.|++ ..+...|..++..|.+.|++++|.+.|+++.... |+..
T Consensus 90 ~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~- 164 (291)
T 3mkr_A 90 REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDAT- 164 (291)
T ss_dssp HHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH-
T ss_pred HHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcH-
Confidence 765 23455667777888889999999999888 4566778888888999999999999999988753 5532
Q ss_pred ccchH----HHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHH
Q 004024 409 FTSVL----STCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAG 481 (778)
Q Consensus 409 ~~~ll----~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~ 481 (778)
...+. ..+...|++++|..++..+.+. .+.+..+++.+...|.+.|++++|...|++..+ .+..+|+.++..
T Consensus 165 ~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~ 243 (291)
T 3mkr_A 165 LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVL 243 (291)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 11111 1122235555555555555554 244555555555566666666666666655432 244455555555
Q ss_pred HHHcCChHH-HHHHHHHHHHCCCCCCh
Q 004024 482 YARHGFGKD-ALMLFESMKTVGIKPDD 507 (778)
Q Consensus 482 ~~~~g~~~~-Al~l~~~m~~~g~~pd~ 507 (778)
+...|+.++ +.++++++.+ +.|+.
T Consensus 244 ~~~~g~~~eaa~~~~~~~~~--~~P~~ 268 (291)
T 3mkr_A 244 SQHLGKPPEVTNRYLSQLKD--AHRSH 268 (291)
T ss_dssp HHHTTCCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHcCCCHHHHHHHHHHHHH--hCCCC
Confidence 555555543 3455555555 44544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-13 Score=132.60 Aligned_cols=193 Identities=15% Similarity=0.089 Sum_probs=157.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHH
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGI 513 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~l 513 (778)
+++...+..+...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+ ..|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 55667788889999999999999999998865 3677899999999999999999999999998 67764 577788
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 004024 514 LSACSHT-----------GLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDAATWGA 580 (778)
Q Consensus 514 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ 580 (778)
..++... |+.++|...|+...+. .| +...+..+..+|.+.|++++|++.+++. ....++..|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888889 9999999999998754 45 4678889999999999999999999887 22267889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHH
Q 004024 581 LLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKM 635 (778)
Q Consensus 581 Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m 635 (778)
+..++...|+++.|...++++++++|+++..+..++.+|...|++++|.+.++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887643
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.6e-13 Score=133.22 Aligned_cols=216 Identities=12% Similarity=0.025 Sum_probs=173.4
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 004024 373 SWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYC 452 (778)
Q Consensus 373 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 452 (778)
.|..+...+...|++++|+..|++.... . .+..++..+...|.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----------------------------------~--~~~~~~~~~~~~~~ 49 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWEL-----------------------------------H--KDITYLNNRAAAEY 49 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------S--CCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-----------------------------------h--ccHHHHHHHHHHHH
Confidence 4555556666666666666666666543 3 34556667778888
Q ss_pred hcCCHHHHHHHHHhccC--C-C-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCc
Q 004024 453 KCGSVEEAYHAFEEIVD--K-D-------VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGL 522 (778)
Q Consensus 453 k~g~~~~A~~~f~~m~~--~-d-------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 522 (778)
+.|++++|.+.|++..+ | + ..+|..+...|...|++++|++.|++... +.|+. ..+...|+
T Consensus 50 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~ 120 (258)
T 3uq3_A 50 EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRN 120 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhH
Confidence 88888888888887754 2 1 57888889999999999999999999988 56663 34566788
Q ss_pred HHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHH
Q 004024 523 VEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAE 599 (778)
Q Consensus 523 ~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~ 599 (778)
+++|.+.++.+... .| +...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...++
T Consensus 121 ~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 121 AEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999988752 34 4667888999999999999999999887 3334 57789999999999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 600 VIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 600 ~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+++++.|+++..+..++.+|...|++++|.+.++...+
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-13 Score=138.12 Aligned_cols=243 Identities=12% Similarity=-0.065 Sum_probs=187.4
Q ss_pred HHhcCChhHHHHHHHHHhhcCc--cc-CcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 004024 381 YAQSGYSEDSLRLFIEMKRYGE--RL-NRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSV 457 (778)
Q Consensus 381 ~~~~g~~~~Al~l~~~m~~~g~--~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 457 (778)
+...|++++|+..|+++..... .| +..++..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3445777778888877776532 11 23455566666777788888888887777664 45678888999999999999
Q ss_pred HHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHch
Q 004024 458 EEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMN 534 (778)
Q Consensus 458 ~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 534 (778)
++|.+.|++..+ .+..+|..+...|...|++++|++.|+++.+ ..|+.......+..+...|+.++|..++....
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998865 4678899999999999999999999999998 67877766666667788899999999998877
Q ss_pred hhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 535 RDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-----AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 535 ~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
... .++...+ .++..+...+..++|.+.+++. ...|+ ..+|..+...+...|+.+.|...++++++++|++
T Consensus 172 ~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 642 2333334 4777788888899999998876 33332 5788999999999999999999999999999987
Q ss_pred CchHHHHHHHhhhcCCcchHHHHH
Q 004024 609 AGMYVLLSNLYAASGRWGDVSKVR 632 (778)
Q Consensus 609 ~~~y~~L~~~y~~~g~~~~a~~~~ 632 (778)
...+ +.++...|++++|.+.+
T Consensus 249 ~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHH---HHHHHHHHHHHHC----
T ss_pred HHHH---HHHHHHHHHHHhhHHHH
Confidence 5444 66777888888887654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-12 Score=131.56 Aligned_cols=239 Identities=9% Similarity=0.012 Sum_probs=185.5
Q ss_pred ccHHHHHHHHHHhcCChhHHHHHhhhCCC--CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhc
Q 004024 340 VASWNTMITGYAQSGEITHARNLFDRMPQ--HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCA 417 (778)
Q Consensus 340 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~ 417 (778)
...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..... |+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~---------- 72 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REMR---------- 72 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccc----------
Confidence 45678899999999999999999987643 566788889999999999999999999887632 1110
Q ss_pred ccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHcCChHHHHHHH
Q 004024 418 NLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDVISWNTMIAGYARHGFGKDALMLF 495 (778)
Q Consensus 418 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~Al~l~ 495 (778)
...+....++..+...|.+.|++++|...|++... |+ ...+...|+.++|++.+
T Consensus 73 -----------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 73 -----------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKA 128 (258)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHH
T ss_pred -----------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHH
Confidence 00000145666778888888888888888887754 34 23466678888999999
Q ss_pred HHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 004024 496 ESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP 573 (778)
Q Consensus 496 ~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p 573 (778)
+++.. ..|+. ..+..+...+...|++++|...|+.+.+.. +.+...|..+...|.+.|++++|.+.+++. ...|
T Consensus 129 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 129 EAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 88887 45643 467777778888899999999998887642 235677888999999999999999998876 3344
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCCchHHHHHHH
Q 004024 574 -DAATWGALLGACRLYGKTELAEKAAEVIFEME------PENAGMYVLLSNL 618 (778)
Q Consensus 574 -~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~------p~~~~~y~~L~~~ 618 (778)
+..+|..+..++...|+.+.|...+++++++. |++...+..|..+
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 47789999999999999999999999999998 8877777666554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-12 Score=132.32 Aligned_cols=246 Identities=10% Similarity=-0.043 Sum_probs=141.8
Q ss_pred cHHHHHHHHHHhcCChhHHHHHhhhCCC---CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhc
Q 004024 341 ASWNTMITGYAQSGEITHARNLFDRMPQ---HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCA 417 (778)
Q Consensus 341 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~ 417 (778)
.+...+...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++....+ ++...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~--------- 72 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKA--------- 72 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTC---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhH---------
Confidence 3445566677777777777777776543 233467777777777777777777777776632 22111
Q ss_pred ccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHH
Q 004024 418 NLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALML 494 (778)
Q Consensus 418 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l 494 (778)
....+..+...|.+.|++++|.+.|++..+ .+..+|..+...|...|++++|++.
T Consensus 73 ----------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 73 ----------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 112234455555555666666665555432 2344555556666666666666666
Q ss_pred HHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCC---HHHHHHHHHhC
Q 004024 495 FESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGR---LDEAQNLMKNM 569 (778)
Q Consensus 495 ~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~---~~eA~~~~~~m 569 (778)
|++..+ ..|+.. .+..+...+...+++++|.+.|+.+.+. .| +...+..+..++...|+ +++|...+++.
T Consensus 131 ~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 131 MEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 665554 244333 2333331333444666666666655542 23 24445555555555555 44444444433
Q ss_pred ----CCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCC
Q 004024 570 ----PFEPD------AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 570 ----~~~p~------~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~ 624 (778)
.-.|+ ..+|..+...+...|+.+.|...++++++++|+++.+...+..+....+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 11232 24777888888999999999999999999999998888888777655543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-12 Score=141.84 Aligned_cols=311 Identities=8% Similarity=-0.011 Sum_probs=171.1
Q ss_pred HHHHHHhcCCCH---HHHHHHHhhCCCCCeehHHHHHHHHHhcC-----ChHHHHHHHHhCCCC-CcchHHHHHHHHhcc
Q 004024 252 TMITGYAQNNYL---AEAQRLFEEAPVKDVFTWTAMVSGYVQNG-----KVDEARMIFDAMPEK-NTVSWNAMIAGYVQT 322 (778)
Q Consensus 252 ~li~~y~~~g~~---~~A~~~f~~m~~~d~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~-~~~t~~~ll~~~~~~ 322 (778)
.|...|...|+. ++|...|++..+.++..+..|...+...| ++++|+..|++..++ +...+..+...|...
T Consensus 40 ~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~ 119 (452)
T 3e4b_A 40 GLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQY 119 (452)
T ss_dssp TCC----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHC
T ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 333444444444 55555555554444444555544333333 445566665555444 444555555555544
Q ss_pred CChHHH---HHHHHhhc-cccccHHHHHHHHHHhcCC----hhHHHHHhhhCCCCCeeehhhHHHHHHhcC---ChhHHH
Q 004024 323 KRMDMA---RELFEAMT-CKNVASWNTMITGYAQSGE----ITHARNLFDRMPQHDCISWAAIIAGYAQSG---YSEDSL 391 (778)
Q Consensus 323 ~~~~~a---~~i~~~~~-~~~~~~~~~Li~~y~k~g~----~~~A~~~f~~m~~~d~~~~~~li~~~~~~g---~~~~Al 391 (778)
+..+.+ .+.+.... ..++.....|...|...+. .+.+..++......++..+..|...|.+.| +.++|+
T Consensus 120 ~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 120 PHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELL 199 (452)
T ss_dssp GGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHH
Confidence 433222 22222222 3455666777777777764 344444555555555556777777777777 667777
Q ss_pred HHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc----CCHHHHHHHHHhc
Q 004024 392 RLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKC----GSVEEAYHAFEEI 467 (778)
Q Consensus 392 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~----g~~~~A~~~f~~m 467 (778)
..|++....| +++...+..|..+|... ++.++|.+.|++.
T Consensus 200 ~~~~~aa~~g------------------------------------~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 200 KQMEAGVSRG------------------------------------TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHHTT------------------------------------CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHCC------------------------------------CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 7777666554 33333334556666544 6888888888877
Q ss_pred cCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC-----cHHHHHHHHHHchhhcCC
Q 004024 468 VDKDVISWNTMIAG-Y--ARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTG-----LVEKGTEYFYSMNRDYGV 539 (778)
Q Consensus 468 ~~~d~~~~~~li~~-~--~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~ 539 (778)
...++..+..|... | ...|+.++|++.|++..+.| +......+...+. .| +.++|.++|....
T Consensus 244 a~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----- 314 (452)
T 3e4b_A 244 APGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----- 314 (452)
T ss_dssp GGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----
Confidence 73356677777766 3 45788888888888888766 4445555555554 45 7888888887765
Q ss_pred CCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCC
Q 004024 540 IPNSKHYTCMVDLLGR----AGRLDEAQNLMKNMPFEPDAATWGALLGACRL----YGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 540 ~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~----~g~~~~a~~~~~~~~~l~p~ 607 (778)
.-+...+..|..+|.. ..++++|.+.+++.--.-++.....|...|.. ..|.++|...++++.+..+.
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 2245556666666655 33788888888776322334445555555442 34788888888888776543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-11 Score=123.60 Aligned_cols=205 Identities=12% Similarity=0.034 Sum_probs=146.1
Q ss_pred eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 004024 371 CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVM 450 (778)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 450 (778)
...|..+...|...|++++|+..|+++.... +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------------------~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------------------PSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------------------CChHHHHHHHHHH
Confidence 3456777777888888888888888776532 2234556667777
Q ss_pred HHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHH
Q 004024 451 YCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 451 y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 526 (778)
|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++...+..|+ ...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888877643 3566777788888888888888888888776444554 34566666777778888888
Q ss_pred HHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 527 TEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
.++|+.+.+.. ..+...+..+..+|.+.|++++|.+.++++ ...| +...|..+...+...|+.+.|...++++.++
T Consensus 161 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88887776531 224666777777888888888888877765 3333 4556777777777788888888888888888
Q ss_pred CCCCCchHH
Q 004024 605 EPENAGMYV 613 (778)
Q Consensus 605 ~p~~~~~y~ 613 (778)
.|+++....
T Consensus 239 ~p~~~~~~~ 247 (252)
T 2ho1_A 239 YPGSLEYQE 247 (252)
T ss_dssp CTTSHHHHH
T ss_pred CCCCHHHHH
Confidence 887755443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7.9e-12 Score=126.01 Aligned_cols=196 Identities=9% Similarity=-0.020 Sum_probs=172.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHH
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSA 516 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a 516 (778)
...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 56678888999999999999999998854 46788999999999999999999999999884 45 55678888889
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 004024 517 CSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTEL 593 (778)
Q Consensus 517 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~ 593 (778)
+...|++++|.++|+.+.+ .+..| +...+..+..+|.+.|++++|.+.++++ ...| +..+|..+...+...|+.+.
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999876 24556 5677888999999999999999999887 3344 47789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 594 AEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 594 a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
|...++++++..|+++..+..++.+|...|++++|.+.++.+.+..
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999887643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-11 Score=120.85 Aligned_cols=197 Identities=14% Similarity=0.063 Sum_probs=166.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHH
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGIL 514 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll 514 (778)
.+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+ ..| +..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IKPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHH
Confidence 3566777888899999999999999998754 4577889999999999999999999999988 345 456788888
Q ss_pred HHHhcc-CcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 004024 515 SACSHT-GLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGK 590 (778)
Q Consensus 515 ~a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~ 590 (778)
..+... |++++|..+|+.+.+ .+..|+ ...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 889999 999999999999886 234443 677888899999999999999998876 3344 47788899999999999
Q ss_pred hHHHHHHHHHHHhcCC-CCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 591 TELAEKAAEVIFEMEP-ENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 591 ~~~a~~~~~~~~~l~p-~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
.+.|...++++++..| +++..+..++.++...|+.+++..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999999 88888999999999999999999998888753
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.6e-12 Score=126.08 Aligned_cols=211 Identities=11% Similarity=0.041 Sum_probs=126.8
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 004024 372 ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMY 451 (778)
Q Consensus 372 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 451 (778)
..|..+...+.+.|++++|+..|+++.... +.+..++..+...|
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------------------------------------~~~~~~~~~la~~~ 67 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN------------------------------------KEDAIPYINFANLL 67 (243)
T ss_dssp ------------------CCTTHHHHHTTC------------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC------------------------------------cccHHHHHHHHHHH
Confidence 455556666666666666666666665421 22344555666677
Q ss_pred HhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHH
Q 004024 452 CKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGT 527 (778)
Q Consensus 452 ~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~ 527 (778)
.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+++.+. .| +...+..+...+...|++++|.
T Consensus 68 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 68 SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHH
Confidence 777777777777776643 35666777777777777777777777777763 33 4455666666777777777777
Q ss_pred HHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 528 EYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 528 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
++++.+.+.. ..+...+..+..++.+.|++++|.+.++++ ...| +..+|..+..++...|+.+.|...++++++++
T Consensus 146 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 146 PYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7777766431 224556677777777777777777777665 2223 46677777777777888888888888888888
Q ss_pred CCCCchHHHHHHHhhhc
Q 004024 606 PENAGMYVLLSNLYAAS 622 (778)
Q Consensus 606 p~~~~~y~~L~~~y~~~ 622 (778)
|+++..+..++.+....
T Consensus 224 p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHHH 240 (243)
T ss_dssp TTCHHHHHHHTC-----
T ss_pred cchHHHHHHHHHHHhhc
Confidence 87777776666554433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-11 Score=119.74 Aligned_cols=207 Identities=10% Similarity=0.019 Sum_probs=161.3
Q ss_pred eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 004024 371 CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVM 450 (778)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 450 (778)
...|..+...|...|++++|+..|+++.... +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------------------------PKNELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------------------ccchHHHHHHHHH
Confidence 3456667777777788888888777776532 2234466677788
Q ss_pred HHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHH
Q 004024 451 YCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARH-GFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEK 525 (778)
Q Consensus 451 y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~-g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~ 525 (778)
|...|++++|.+.|++..+ .+..+|..+...|... |++++|++.|+++.+.+..|+ ...+..+..++...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888887743 4667888888888999 999999999999887444454 4567778888889999999
Q ss_pred HHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004024 526 GTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFE--PDAATWGALLGACRLYGKTELAEKAAEVI 601 (778)
Q Consensus 526 a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~--p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~ 601 (778)
|..+|..+.+. .| +...+..+..++.+.|++++|.+.++++ ... .+...|..+...+...|+.+.+...++.+
T Consensus 132 A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 132 AEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999888764 33 4777888999999999999999999876 233 35667777778888999999999999999
Q ss_pred HhcCCCCCchHHHHH
Q 004024 602 FEMEPENAGMYVLLS 616 (778)
Q Consensus 602 ~~l~p~~~~~y~~L~ 616 (778)
.+..|+++.....+.
T Consensus 209 ~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 209 QANFPYSEELQTVLT 223 (225)
T ss_dssp HHHCTTCHHHHHHHC
T ss_pred HHhCCCCHHHHHHhc
Confidence 999999987766654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.3e-11 Score=122.86 Aligned_cols=236 Identities=10% Similarity=0.014 Sum_probs=176.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCC--CCee----ehhhHHHHH
Q 004024 311 SWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQ--HDCI----SWAAIIAGY 381 (778)
Q Consensus 311 t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~----~~~~li~~~ 381 (778)
.+......+...|++++|...+..+. +.+..++..+...|.+.|++++|...|++..+ ++.. +|..+...|
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 44455666777777777777777776 44556778888888888888888888887654 2222 377888889
Q ss_pred HhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004024 382 AQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAY 461 (778)
Q Consensus 382 ~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 461 (778)
...|++++|+..|++..... +.+..++..+...|.+.|++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD------------------------------------TTRLDMYGQIGSYFYNKGNFPLAI 128 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS------------------------------------TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC------------------------------------cccHHHHHHHHHHHHHccCHHHHH
Confidence 99999999999998887632 234456778889999999999999
Q ss_pred HHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCc---HHHHHHHHHHch
Q 004024 462 HAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGL---VEKGTEYFYSMN 534 (778)
Q Consensus 462 ~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~ 534 (778)
..|++..+ .+...|..+...+...+++++|++.|++..+ ..|+ ...+..+...+...|. .++|...|+.+.
T Consensus 129 ~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 129 QYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 99999865 3566777777344455699999999999998 5676 4566677777877887 888888888877
Q ss_pred hhcCCCCC------hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 004024 535 RDYGVIPN------SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGA 584 (778)
Q Consensus 535 ~~~~~~p~------~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a 584 (778)
+...-.|+ ...|..+...|.+.|++++|.+.+++. ...|+ +..+..+...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 65444454 267888999999999999999999887 44554 5555554433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=5.2e-12 Score=135.56 Aligned_cols=241 Identities=10% Similarity=0.082 Sum_probs=165.1
Q ss_pred cHHHHHHHHHHhcCChhHHHHHhhhCCC---CCeeehhhHHHHHHhcCC-hhHHHHHHHHHhhcCcccCcccccchHHHh
Q 004024 341 ASWNTMITGYAQSGEITHARNLFDRMPQ---HDCISWAAIIAGYAQSGY-SEDSLRLFIEMKRYGERLNRSPFTSVLSTC 416 (778)
Q Consensus 341 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~-~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~ 416 (778)
.+++.+...|.+.|++++|+..|++..+ .+...|+.+...|...|+ +++|+..|++.....
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--------------- 162 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--------------- 162 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---------------
Confidence 3455555555555666666666555432 233455555556666664 666666666655432
Q ss_pred cccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHH
Q 004024 417 ANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALM 493 (778)
Q Consensus 417 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~ 493 (778)
+.+..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|++
T Consensus 163 ---------------------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~ 221 (382)
T 2h6f_A 163 ---------------------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQ 221 (382)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred ---------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHH
Confidence 33455666666777777777777777777654 466778888888888888888888
Q ss_pred HHHHHHHCCCCCC-hhHHHHHHHHHhc-cCcHHHH-----HHHHHHchhhcCCCC-ChHHHHHHHHHHhhcC--CHHHHH
Q 004024 494 LFESMKTVGIKPD-DITMVGILSACSH-TGLVEKG-----TEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAG--RLDEAQ 563 (778)
Q Consensus 494 l~~~m~~~g~~pd-~~t~~~ll~a~~~-~g~~~~a-----~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g--~~~eA~ 563 (778)
.|+++++ +.|+ ...|..+..++.. .|..++| ++.|..... +.| +...|..+..+|.+.| ++++|+
T Consensus 222 ~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 222 YVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHH
Confidence 8888887 5664 4567777777777 5554666 466776654 345 4667888888888888 588888
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHHcC--------C-hHHHHHHHHHH-HhcCCCCCchHHHHHHHhhhc
Q 004024 564 NLMKNMPFEPD-AATWGALLGACRLYG--------K-TELAEKAAEVI-FEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 564 ~~~~~m~~~p~-~~~~~~Ll~a~~~~g--------~-~~~a~~~~~~~-~~l~p~~~~~y~~L~~~y~~~ 622 (778)
++++++...|+ ..++..|...+...| + .+.|..+++++ .+++|.....|..++..+...
T Consensus 297 ~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 297 NQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 88887755565 567888888887764 3 58899999999 999999988888887766443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-11 Score=123.59 Aligned_cols=196 Identities=13% Similarity=0.109 Sum_probs=154.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHH
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGIL 514 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll 514 (778)
.....+..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|++..+. .| +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 3455677788889999999999999999865 36788999999999999999999999999884 45 456788888
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTE 592 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~ 592 (778)
..+...|++++|.++|+.+.+.. ..+...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 89999999999999999988642 235778889999999999999999999887 3334 5778999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 593 LAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 593 ~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
.|...++++++..|+++..+..++.+|...|++++|.+.++.+.+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999988763
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.8e-12 Score=137.71 Aligned_cols=341 Identities=11% Similarity=-0.000 Sum_probs=204.4
Q ss_pred HHHHHhcCCCHHHHHHHHhhCCCC-CeehHHHHHHHHHhcCCh---HHHHHHHHhCCCCCcchHHHHHHHHhccC-----
Q 004024 253 MITGYAQNNYLAEAQRLFEEAPVK-DVFTWTAMVSGYVQNGKV---DEARMIFDAMPEKNTVSWNAMIAGYVQTK----- 323 (778)
Q Consensus 253 li~~y~~~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~~~~t~~~ll~~~~~~~----- 323 (778)
+...+.+.|++++|.++|++..++ +..++..|...|...|+. ++|+..|++..+.+...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 455666777777777777765432 444555555666666666 67777777766555555556655444433
Q ss_pred ChHHHHHHHHhhc-cccccHHHHHHHHHHhcCChhHHHHH---hhhCCC-CCeeehhhHHHHHHhcCChhHHHHHHHHHh
Q 004024 324 RMDMARELFEAMT-CKNVASWNTMITGYAQSGEITHARNL---FDRMPQ-HDCISWAAIIAGYAQSGYSEDSLRLFIEMK 398 (778)
Q Consensus 324 ~~~~a~~i~~~~~-~~~~~~~~~Li~~y~k~g~~~~A~~~---f~~m~~-~d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 398 (778)
+.++|...+.... ..+...+..|..+|...+..+.+.+. +..... .+...+..+...|...+.++++
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~-------- 160 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH-------- 160 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG--------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC--------
Confidence 5566666666665 33444566666666655443322221 111111 1222333333333333332222
Q ss_pred hcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhccC---CCh
Q 004024 399 RYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCG---SVEEAYHAFEEIVD---KDV 472 (778)
Q Consensus 399 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~m~~---~d~ 472 (778)
.+.+..++.... ..++..+..|..+|.+.| +.++|.+.|++..+ ++.
T Consensus 161 -----------------------~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a 213 (452)
T 3e4b_A 161 -----------------------LDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA 213 (452)
T ss_dssp -----------------------HHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH
T ss_pred -----------------------HHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH
Confidence 222223222222 233347778899999999 99999999998755 344
Q ss_pred hHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCCCChhHHHHHHHH-H--hccCcHHHHHHHHHHchhhcCCCCChHH
Q 004024 473 ISWNTMIAGYARH----GFGKDALMLFESMKTVGIKPDDITMVGILSA-C--SHTGLVEKGTEYFYSMNRDYGVIPNSKH 545 (778)
Q Consensus 473 ~~~~~li~~~~~~----g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 545 (778)
..+..|...|... ++.++|++.|++.. .| +...+..+... + ...|+.++|.++|+...+. | +...
T Consensus 214 ~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A 285 (452)
T 3e4b_A 214 QRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRA 285 (452)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHH
Confidence 4446677777544 68999999999987 33 33344444444 3 5689999999999998754 4 5667
Q ss_pred HHHHHHHHhhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 546 YTCMVDLLGRAG-----RLDEAQNLMKNMPFEPDAATWGALLGACRL----YGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 546 y~~lv~~l~r~g-----~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~----~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
+..|..+|. .| ++++|.+.+++.- .-++..+..|...+.. ..|.++|...++++.+ +.++..+..|+
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg 361 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIA 361 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHH
Confidence 777887776 55 9999999999987 5567777777766655 3399999999999876 45678899999
Q ss_pred HHhhh----cCCcchHHHHHHHHHhCCC
Q 004024 617 NLYAA----SGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 617 ~~y~~----~g~~~~a~~~~~~m~~~g~ 640 (778)
.+|.. ..+.++|..+++...+.|.
T Consensus 362 ~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 362 QLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99985 4688899999998888775
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-11 Score=130.24 Aligned_cols=222 Identities=12% Similarity=0.074 Sum_probs=185.2
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 004024 372 ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMY 451 (778)
Q Consensus 372 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 451 (778)
..|+.+...+.+.|++++|+..|++..... +.+..+++.+...|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~------------------------------------P~~~~a~~~~g~~l 141 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN------------------------------------AANYTVWHFRRVLL 141 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC------------------------------------ccCHHHHHHHHHHH
Confidence 356677777778888888888888776532 34566778888899
Q ss_pred HhcCC-HHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHH
Q 004024 452 CKCGS-VEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 452 ~k~g~-~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 526 (778)
.+.|+ +++|+..|++... .+...|+.+...|...|++++|+..|+++++ +.|+ ...|..+..++...|++++|
T Consensus 142 ~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 142 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHH
Confidence 99997 9999999999865 4778999999999999999999999999999 6775 56788899999999999999
Q ss_pred HHHHHHchhhcCCCC-ChHHHHHHHHHHhh-cCCHHHH-----HHHHHhC-CCCCC-HHHHHHHHHHHHHcC--ChHHHH
Q 004024 527 TEYFYSMNRDYGVIP-NSKHYTCMVDLLGR-AGRLDEA-----QNLMKNM-PFEPD-AATWGALLGACRLYG--KTELAE 595 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r-~g~~~eA-----~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g--~~~~a~ 595 (778)
+..|+.+.+. .| +...|+.+..+|.+ .|..++| ++.+++. .+.|+ ...|..+...+...| +.+.|.
T Consensus 220 l~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 220 LQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHH
Confidence 9999999864 45 57788899999999 6775777 4666655 45664 779999999998888 689999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHhhhcC---------CcchHHHHHHHH
Q 004024 596 KAAEVIFEMEPENAGMYVLLSNLYAASG---------RWGDVSKVRLKM 635 (778)
Q Consensus 596 ~~~~~~~~l~p~~~~~y~~L~~~y~~~g---------~~~~a~~~~~~m 635 (778)
..++++ +.+|+++..+..|+.+|...| ..++|.++++.+
T Consensus 297 ~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 297 NQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 999998 999999999999999999985 258899998887
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.4e-10 Score=116.84 Aligned_cols=223 Identities=13% Similarity=-0.025 Sum_probs=158.1
Q ss_pred CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 004024 370 DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLV 449 (778)
Q Consensus 370 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 449 (778)
+..++..+...|.+.|++++|+..|++..+.+ +...+..|..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------------------------------------~~~a~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--------------------------------------ENSGCFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------------------------------CHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------------------------------------CHHHHHHHHH
Confidence 33455666666777777777777777665521 2334445666
Q ss_pred HHHh----cCCHHHHHHHHHhccC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc-
Q 004024 450 MYCK----CGSVEEAYHAFEEIVD-KDVISWNTMIAGYAR----HGFGKDALMLFESMKTVGIKPDDITMVGILSACSH- 519 (778)
Q Consensus 450 ~y~k----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~- 519 (778)
+|.. .|++++|.+.|++..+ .+..+|..+...|.. .|+.++|++.|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 6666 7777777777776644 356677777777777 778888888887777754 55666666677777
Q ss_pred ---cCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c
Q 004024 520 ---TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGR----AGRLDEAQNLMKNMPFEPDAATWGALLGACRL----Y 588 (778)
Q Consensus 520 ---~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~----~ 588 (778)
.|+.++|.++|+...+. + +...+..+..+|.+ .|++++|.+.+++.--..++..+..|...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 77888888888777653 2 45566667777776 78888888888766212346677777777777 8
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHhhh----cCCcchHHHHHHHHHhCC
Q 004024 589 GKTELAEKAAEVIFEMEPENAGMYVLLSNLYAA----SGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 589 g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~----~g~~~~a~~~~~~m~~~g 639 (778)
++.++|...++++++.+| +..+..|+.+|.. .|++++|.+.++...+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888888888888766 5677888888888 888888888888777655
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=134.42 Aligned_cols=255 Identities=13% Similarity=0.046 Sum_probs=160.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhhCCC-------C--CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcc-cCcccccc
Q 004024 342 SWNTMITGYAQSGEITHARNLFDRMPQ-------H--DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGER-LNRSPFTS 411 (778)
Q Consensus 342 ~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~--d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-pd~~t~~~ 411 (778)
++..+...|...|++++|...|++..+ + ....|..+...|...|++++|+..|.+....... ++.
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 123 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK----- 123 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-----
Confidence 344444555555555555555444321 0 1234566666777777777777777766542110 000
Q ss_pred hHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC--------------------HHHHHHHHHhccC--
Q 004024 412 VLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGS--------------------VEEAYHAFEEIVD-- 469 (778)
Q Consensus 412 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~--------------------~~~A~~~f~~m~~-- 469 (778)
.....++..+...|...|+ +++|.+.|++...
T Consensus 124 --------------------------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 124 --------------------------VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 0012244455555666666 6666666655422
Q ss_pred ---C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----hhHHHHHHHHHhccCcHHHHHHHHHHchhhc
Q 004024 470 ---K----DVISWNTMIAGYARHGFGKDALMLFESMKTVGI-KPD----DITMVGILSACSHTGLVEKGTEYFYSMNRDY 537 (778)
Q Consensus 470 ---~----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 537 (778)
. ...+|..+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|..+++......
T Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1 134577777778888888888888877765210 112 1256677777888888888888887765432
Q ss_pred CCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 538 GVIPN----SKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 538 ~~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
.-.++ ...+..+..+|.+.|++++|.+.+++. +-.++ ..+|..+...+...|+++.|...+++++++.
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11111 556778888899999999999888765 11122 5578888899999999999999999999874
Q ss_pred CC------CCchHHHHHHHhhhcCCcch
Q 004024 606 PE------NAGMYVLLSNLYAASGRWGD 627 (778)
Q Consensus 606 p~------~~~~y~~L~~~y~~~g~~~~ 627 (778)
+. ...++..|+.+|...|+...
T Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 338 REVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 33 34578889999998887754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-11 Score=138.04 Aligned_cols=206 Identities=9% Similarity=-0.050 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 422 LELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSV-EEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFES 497 (778)
Q Consensus 422 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~-~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~ 497 (778)
++.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555544332 245778888899999999999 999999998854 3578999999999999999999999999
Q ss_pred HHHCCCCCChhHHHHHHHHHhcc---------CcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhc--------CCH
Q 004024 498 MKTVGIKPDDITMVGILSACSHT---------GLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRA--------GRL 559 (778)
Q Consensus 498 m~~~g~~pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~--------g~~ 559 (778)
..+ +.|+...+..+...+... |++++|.+.|+...+. .| +...|..+..+|.+. |++
T Consensus 163 al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 998 678888888888999999 9999999999998764 34 577888999999998 999
Q ss_pred HHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHH
Q 004024 560 DEAQNLMKNM-PFEP----DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRL 633 (778)
Q Consensus 560 ~eA~~~~~~m-~~~p----~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~ 633 (778)
++|++.+++. ...| ++..|..+..++...|+++.|...++++++++|+++.++..++.++...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999887 3456 678999999999999999999999999999999999999999999999999999987543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.4e-11 Score=117.94 Aligned_cols=191 Identities=12% Similarity=-0.021 Sum_probs=113.3
Q ss_pred ccccHHHHHHHHHHhcCChhHHHHHhhhCCCC---CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHH
Q 004024 338 KNVASWNTMITGYAQSGEITHARNLFDRMPQH---DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLS 414 (778)
Q Consensus 338 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~ 414 (778)
++...+..+...|.+.|++++|...|++..+. +...|..+...+.+.|++++|+..|++..+.. |+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~--------- 71 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART--PR--------- 71 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC---------
Confidence 44556666677777777777777777765432 34556666677777777777777777766532 32
Q ss_pred HhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-----------CCHHHHHHHHHhccC--C-ChhHHHHHHH
Q 004024 415 TCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKC-----------GSVEEAYHAFEEIVD--K-DVISWNTMIA 480 (778)
Q Consensus 415 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~-----------g~~~~A~~~f~~m~~--~-d~~~~~~li~ 480 (778)
+...+..+...|.+. |++++|...|++..+ | +...|..+..
T Consensus 72 -------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 72 -------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 333444444455555 777777777776643 2 4556777777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCH
Q 004024 481 GYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRL 559 (778)
Q Consensus 481 ~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~ 559 (778)
.|...|++++|++.|++..+.. .+...+..+..++...|++++|...|+...+. .| +...+..+..++.+.|++
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC----
T ss_pred HHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCH
Confidence 7777777777777777777654 55566666666777777777777777766543 33 355566666677777777
Q ss_pred HHHHHHHHhC
Q 004024 560 DEAQNLMKNM 569 (778)
Q Consensus 560 ~eA~~~~~~m 569 (778)
++|.+.+++.
T Consensus 202 ~~A~~~~~~~ 211 (217)
T 2pl2_A 202 EEAARAAALE 211 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 7776666543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-10 Score=117.40 Aligned_cols=227 Identities=10% Similarity=-0.019 Sum_probs=178.8
Q ss_pred ccccHHHHHHHHHHhcCChhHHHHHhhhCCCC-CeeehhhHHHHHHh----cCChhHHHHHHHHHhhcCcccCcccccch
Q 004024 338 KNVASWNTMITGYAQSGEITHARNLFDRMPQH-DCISWAAIIAGYAQ----SGYSEDSLRLFIEMKRYGERLNRSPFTSV 412 (778)
Q Consensus 338 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~----~g~~~~Al~l~~~m~~~g~~pd~~t~~~l 412 (778)
.++.++..+...|.+.|++++|...|++..++ +..+|..+...|.. .+++++|+..|++..+.+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------- 72 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----------- 72 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----------
Confidence 35667888999999999999999999987654 44567777778888 888888888888776532
Q ss_pred HHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhccC-CChhHHHHHHHHHHH---
Q 004024 413 LSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCK----CGSVEEAYHAFEEIVD-KDVISWNTMIAGYAR--- 484 (778)
Q Consensus 413 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~--- 484 (778)
+...+..|..+|.. .|++++|.+.|++..+ .+..++..+...|..
T Consensus 73 ---------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 73 ---------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKV 125 (273)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSS
T ss_pred ---------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCC
Confidence 34455566777777 8888888888887754 467778888888888
Q ss_pred -cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc----cCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhh----
Q 004024 485 -HGFGKDALMLFESMKTVGIKPDDITMVGILSACSH----TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGR---- 555 (778)
Q Consensus 485 -~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r---- 555 (778)
.|+.++|++.|++..+.+ +...+..+...+.. .++.++|..+|+...+. .+...+..+..+|.+
T Consensus 126 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSS
T ss_pred cccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCC
Confidence 889999999999888865 45566666677776 88999999999887754 245677788888888
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCC
Q 004024 556 AGRLDEAQNLMKNMPFEPDAATWGALLGACRL----YGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 556 ~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~----~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
.|++++|.+.+++.--..+...+..|...+.. .++.++|...++++.++.|+++
T Consensus 199 ~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 199 TKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999876212236778888888888 8999999999999999998763
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.7e-11 Score=123.60 Aligned_cols=218 Identities=11% Similarity=0.030 Sum_probs=180.1
Q ss_pred HhcccccHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCCh
Q 004024 415 TCANLASLELGKQLHGQLVKVGF---EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFG 488 (778)
Q Consensus 415 a~~~~~~~~~a~~i~~~~~~~g~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~ 488 (778)
.....+++++|...+..+++... +.+..++..+...|...|++++|...|++..+ .+..+|..+...|...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 34566899999999999988642 23577888899999999999999999998854 4688999999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 004024 489 KDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMK 567 (778)
Q Consensus 489 ~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~ 567 (778)
++|++.|++..+ ..| +...+..+...+...|++++|.++|+.+.+. .|+...+......+.+.|++++|...++
T Consensus 94 ~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 94 DAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999998 456 4668888899999999999999999998764 4655555556666678899999999996
Q ss_pred hC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 568 NM-P-FEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPE----NAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 568 ~m-~-~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~----~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
+. . .+++...|. ++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|.+.++...+.
T Consensus 169 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 169 QHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 65 2 234444554 677777788889999999999987764 3678999999999999999999999988764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=134.00 Aligned_cols=264 Identities=12% Similarity=0.008 Sum_probs=182.6
Q ss_pred HHHHHHHHHhcCChhHHHHHhhhCCC--CC-e----eehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHH
Q 004024 343 WNTMITGYAQSGEITHARNLFDRMPQ--HD-C----ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLST 415 (778)
Q Consensus 343 ~~~Li~~y~k~g~~~~A~~~f~~m~~--~d-~----~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a 415 (778)
+..+...|...|++++|...|++..+ ++ . ..|..+...|...|++++|+..|++.....
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 116 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA-------------- 116 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence 34455666677777777777766543 21 1 245566666666677777777666654321
Q ss_pred hcccccHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----C----ChhHHHHHHHHHHHc
Q 004024 416 CANLASLELGKQLHGQLVKVG-FEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-----K----DVISWNTMIAGYARH 485 (778)
Q Consensus 416 ~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~----d~~~~~~li~~~~~~ 485 (778)
.+.+ .+....++..+...|...|++++|...|++..+ . ...+|..+...|...
T Consensus 117 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 117 -----------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp -----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 0001 012344566777788888888888888877643 1 234677788888888
Q ss_pred CC-----------------hHHHHHHHHHHHHC----CCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC-
Q 004024 486 GF-----------------GKDALMLFESMKTV----GIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN- 542 (778)
Q Consensus 486 g~-----------------~~~Al~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 542 (778)
|+ +++|++.+++..+. +-.|. ..++..+...+...|++++|.++|+...+...-.++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 88 88888888776542 11121 236667777888899999999988887653221122
Q ss_pred ---hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---
Q 004024 543 ---SKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN--- 608 (778)
Q Consensus 543 ---~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~--- 608 (778)
...+..+..+|...|++++|.+.+++. +-..+ ..+|..+...+...|+++.|...+++++++.+..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 236778888999999999999988765 11111 4578888899999999999999999999875543
Q ss_pred ---CchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 609 ---AGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 609 ---~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
...+..++.+|...|++++|.+.++...+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34788999999999999999999887765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-11 Score=130.42 Aligned_cols=264 Identities=14% Similarity=0.066 Sum_probs=187.8
Q ss_pred HHHHHHHHHhcCChhHHHHHhhhCCC--C-C----eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHH
Q 004024 343 WNTMITGYAQSGEITHARNLFDRMPQ--H-D----CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLST 415 (778)
Q Consensus 343 ~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a 415 (778)
+..+...+.+.|++++|...|++..+ + + ...|..+...|...|++++|+..|++.....
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 77 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-------------- 77 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--------------
Confidence 34445556666666666666655432 1 1 1244555555556666666666655543310
Q ss_pred hcccccHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHc
Q 004024 416 CANLASLELGKQLHGQLVKVGFE-AGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KD----VISWNTMIAGYARH 485 (778)
Q Consensus 416 ~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~ 485 (778)
.+.+.. ....++..+...|...|++++|...|++..+ ++ ..+|..+...|...
T Consensus 78 -----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 78 -----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 140 (406)
T ss_dssp -----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence 011111 1245667788899999999999999987754 23 44788899999999
Q ss_pred CC--------------------hHHHHHHHHHHHHC----CCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC
Q 004024 486 GF--------------------GKDALMLFESMKTV----GIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVI 540 (778)
Q Consensus 486 g~--------------------~~~Al~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 540 (778)
|+ +++|++.+++.... +-.|. ..++..+...+...|++++|.++|+...+...-.
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 99 99999999887542 11222 2367778888999999999999999876542222
Q ss_pred CC----hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 541 PN----SKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 541 p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
++ ...|..+..+|.+.|++++|.+.+++. +-.++ ..+|..+...+...|+++.|...+++++++.|..
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 22 347888999999999999999998776 11122 4578888999999999999999999999876544
Q ss_pred ------CchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 609 ------AGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 609 ------~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+..+..++.+|...|++++|.+.++...+
T Consensus 301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788999999999999999999887654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.3e-11 Score=125.50 Aligned_cols=263 Identities=14% Similarity=0.064 Sum_probs=182.0
Q ss_pred HHHHHHHHhcCChhHHHHHhhhCCC--C-C----eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHh
Q 004024 344 NTMITGYAQSGEITHARNLFDRMPQ--H-D----CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTC 416 (778)
Q Consensus 344 ~~Li~~y~k~g~~~~A~~~f~~m~~--~-d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~ 416 (778)
......+.+.|++++|...|+++.+ + + ...|..+...|...|++++|+..|++.....
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------- 73 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------------- 73 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---------------
Confidence 3445566666777777766666532 1 1 1345556666666666666666666554321
Q ss_pred cccccHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcC
Q 004024 417 ANLASLELGKQLHGQLVKVGF-EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KD----VISWNTMIAGYARHG 486 (778)
Q Consensus 417 ~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g 486 (778)
.+.+. +....++..+...|...|++++|...|++..+ ++ ..+|..+...|...|
T Consensus 74 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 74 ----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp ----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 01111 11244566778888888999888888887643 22 336777888888888
Q ss_pred C--------------------hHHHHHHHHHHHHC----CCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC
Q 004024 487 F--------------------GKDALMLFESMKTV----GIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP 541 (778)
Q Consensus 487 ~--------------------~~~Al~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 541 (778)
+ +++|++.+++.... +-.|. ..++..+...+...|++++|.++++...+...-.+
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 8 88888888876542 11121 23566777788889999999999888764322112
Q ss_pred C----hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-
Q 004024 542 N----SKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN- 608 (778)
Q Consensus 542 ~----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~- 608 (778)
+ ...+..+...+.+.|++++|.+.+++. +-.++ ..++..+...+...|+++.|...+++++++.|..
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 2 346788889999999999999988765 11122 4577888889999999999999999999876543
Q ss_pred -----CchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 609 -----AGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 609 -----~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
...+..++.+|...|++++|.+.++...+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 33788999999999999999999888765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-10 Score=111.03 Aligned_cols=162 Identities=13% Similarity=0.087 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV 550 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 550 (778)
...|..+...|...|++++|++.|++..+ +.|+. .++..+..++...|++++|...+...... ...+...+..+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 34555555555566666666666665555 34432 34555555556666666666666555432 111344455556
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
..+...+++++|.+.+++. ...| +..+|..+...+...|+++.|+..++++++++|+++.++..++.+|...|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 6666777777777766655 2334 3567777777788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHh
Q 004024 629 SKVRLKMRD 637 (778)
Q Consensus 629 ~~~~~~m~~ 637 (778)
.+.++...+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888776654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=121.56 Aligned_cols=236 Identities=13% Similarity=0.055 Sum_probs=140.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhhCCC---------CCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccch
Q 004024 342 SWNTMITGYAQSGEITHARNLFDRMPQ---------HDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSV 412 (778)
Q Consensus 342 ~~~~Li~~y~k~g~~~~A~~~f~~m~~---------~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~l 412 (778)
++..+...|...|++++|.+.|++..+ .....|..+...|...|++++|+..|.+........+..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 119 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK----- 119 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-----
Confidence 344455555555555555555554321 112456666777777788888887777765421110000
Q ss_pred HHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC--------------------HHHHHHHHHhccC---
Q 004024 413 LSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGS--------------------VEEAYHAFEEIVD--- 469 (778)
Q Consensus 413 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~--------------------~~~A~~~f~~m~~--- 469 (778)
.....++..+...|...|+ +++|.+.|++...
T Consensus 120 -------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~ 174 (338)
T 3ro2_A 120 -------------------------VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174 (338)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0012233444555555555 5555555554422
Q ss_pred --C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----hhHHHHHHHHHhccCcHHHHHHHHHHchhhcC
Q 004024 470 --K----DVISWNTMIAGYARHGFGKDALMLFESMKTVGI-KPD----DITMVGILSACSHTGLVEKGTEYFYSMNRDYG 538 (778)
Q Consensus 470 --~----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 538 (778)
+ ...+|..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|.++++.......
T Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 254 (338)
T 3ro2_A 175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 254 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 123566667777777777777777777654210 011 12566666677777888888777776654211
Q ss_pred CCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 004024 539 VIPN----SKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEP 606 (778)
Q Consensus 539 ~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p 606 (778)
-.++ ...+..+..+|.+.|++++|.+.+++. +-.++ ..+|..+...+...|+++.|...+++++++.+
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 255 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 1111 456777888888899999998888765 11112 44778888999999999999999999998876
Q ss_pred C
Q 004024 607 E 607 (778)
Q Consensus 607 ~ 607 (778)
.
T Consensus 335 ~ 335 (338)
T 3ro2_A 335 E 335 (338)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.8e-11 Score=129.17 Aligned_cols=268 Identities=12% Similarity=0.023 Sum_probs=191.5
Q ss_pred chHHHHHHHHhccCChHHHHHHHHhhc---cccc----cHHHHHHHHHHhcCChhHHHHHhhhCCCC---------Ceee
Q 004024 310 VSWNAMIAGYVQTKRMDMARELFEAMT---CKNV----ASWNTMITGYAQSGEITHARNLFDRMPQH---------DCIS 373 (778)
Q Consensus 310 ~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~----~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---------d~~~ 373 (778)
..+..+...+...|++++|...++.+. +.+. .++..+...|...|++++|...|++..+. ....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 455667778899999999999999998 3333 47888999999999999999999876431 2356
Q ss_pred hhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 004024 374 WAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCK 453 (778)
Q Consensus 374 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 453 (778)
|..+...|...|++++|+..|++........+ + .+....++..+...|..
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~---------------~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLG---------------D---------------RLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---------------C---------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh---------------c---------------hHHHHHHHHHHHHHHHH
Confidence 78888889999999999999988765310000 0 01123345556666777
Q ss_pred cCC-----------------HHHHHHHHHhccC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC
Q 004024 454 CGS-----------------VEEAYHAFEEIVD-----K----DVISWNTMIAGYARHGFGKDALMLFESMKTVGIK-PD 506 (778)
Q Consensus 454 ~g~-----------------~~~A~~~f~~m~~-----~----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-pd 506 (778)
.|+ +++|.+.|++..+ . ...+|..+...|...|++++|++.|++..+..-. ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 777 7777776665432 1 2346777778888888888888888877652100 11
Q ss_pred ----hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC
Q 004024 507 ----DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP----NSKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD 574 (778)
Q Consensus 507 ----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~ 574 (778)
..++..+...+...|++++|.++|+.......-.. ....+..+..+|.+.|++++|.+.+++. +-.++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 12567777788888888888888887654321111 2466778889999999999999988776 11112
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 004024 575 ----AATWGALLGACRLYGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 575 ----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~ 607 (778)
..+|..+...+...|+.+.|...+++++++.+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 347788889999999999999999999988654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-10 Score=134.74 Aligned_cols=160 Identities=16% Similarity=0.187 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMV 550 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv 550 (778)
.+|+.|...|.+.|++++|++.|++..+ +.|+ ..++..+..++...|++++|.+.|++..+. .| +...|..+.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg 84 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 4555556666666666666666666655 4554 335555556666666666666666655532 34 356677777
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
.+|.+.|++++|++.+++. .+.|+ ..+|..|..++...|++++|+..++++++++|+++.+|..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 7778888888888777765 44564 678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 004024 629 SKVRLKMRD 637 (778)
Q Consensus 629 ~~~~~~m~~ 637 (778)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.20 E-value=3e-10 Score=108.44 Aligned_cols=167 Identities=13% Similarity=0.058 Sum_probs=143.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHH
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGIL 514 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll 514 (778)
.++.+|..|...|.+.|++++|.+.|++..+ .++.+|..+...|...|++++|+..+++... ..|+ ...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 3567889999999999999999999998854 4678899999999999999999999999988 4554 45666777
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTE 592 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~ 592 (778)
..+...++.+++.+.+....+.. +-+...+..+..+|.+.|++++|++.+++. ...| ++.+|..+..++...|+.+
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 78899999999999999887542 225677888999999999999999999887 4455 4779999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 004024 593 LAEKAAEVIFEMEPENA 609 (778)
Q Consensus 593 ~a~~~~~~~~~l~p~~~ 609 (778)
+|...++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999863
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.5e-09 Score=110.38 Aligned_cols=184 Identities=11% Similarity=0.066 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHH
Q 004024 423 ELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVI-SWNTMIAGYARHGFGKDALMLFESM 498 (778)
Q Consensus 423 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~-~~~~li~~~~~~g~~~~Al~l~~~m 498 (778)
++|..+++..++.-.+.+..++..++..+.+.|++++|.++|++..+ | +.. .|..++..+.+.|+.++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66666666666632244666888889999999999999999998865 3 343 7999999999999999999999999
Q ss_pred HHCCCCCC-hhHHHHHHHHHh-ccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCC
Q 004024 499 KTVGIKPD-DITMVGILSACS-HTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM----PFE 572 (778)
Q Consensus 499 ~~~g~~pd-~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~ 572 (778)
.+. .|+ ...|........ ..|+.++|..+|+...+..+ -+...|..+++.+.+.|++++|..++++. ++.
T Consensus 161 ~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 161 RED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred Hhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 874 343 334443333322 36999999999998876532 25677888899999999999999998876 235
Q ss_pred C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 004024 573 P--DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG 610 (778)
Q Consensus 573 p--~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 610 (778)
| ....|..++.....+|+.+.|..+++++++..|+++.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 5 3568999998889999999999999999999998653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.16 E-value=8.1e-09 Score=118.18 Aligned_cols=225 Identities=8% Similarity=-0.009 Sum_probs=162.7
Q ss_pred HHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHH-HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 004024 389 DSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGK-QLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEI 467 (778)
Q Consensus 389 ~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~-~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 467 (778)
.+..+|++....- .-+...|.....-+...|+.+.|. .+++..++. .+.+..++-.++..+-+.|+++.|+++|+++
T Consensus 327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455666665532 223334444444455667777886 899888764 4667778888999999999999999999987
Q ss_pred cC-------------CC------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhHHHHHHHHHhc-c
Q 004024 468 VD-------------KD------------VISWNTMIAGYARHGFGKDALMLFESMKTV-GIKPDDITMVGILSACSH-T 520 (778)
Q Consensus 468 ~~-------------~d------------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~-g~~pd~~t~~~ll~a~~~-~ 520 (778)
.. |+ ...|...+....+.|..+.|..+|.+..+. +. +....|......-.+ .
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhC
Confidence 54 21 236888888888899999999999999885 21 122334322222223 3
Q ss_pred CcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChHHHH
Q 004024 521 GLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP----DAATWGALLGACRLYGKTELAE 595 (778)
Q Consensus 521 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p----~~~~~~~Ll~a~~~~g~~~~a~ 595 (778)
++.+.|..+|+...+.++- +...+...++.+...|+.+.|..+|++. ...| ...+|...+.--..+|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~--~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFAT--DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5599999999999886543 4455678889888999999999999986 2233 2468999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHh
Q 004024 596 KAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 596 ~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
.+.+++.+..|+++ ....+++=|
T Consensus 562 ~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 562 TLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHhCCCCc-HHHHHHHHh
Confidence 99999999999884 334444444
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-09 Score=107.36 Aligned_cols=200 Identities=11% Similarity=0.056 Sum_probs=104.6
Q ss_pred ccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHc
Q 004024 409 FTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARH 485 (778)
Q Consensus 409 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~ 485 (778)
+......+...|++++|...+..+++..-+++...+..+...|.+.|++++|.+.|++..+ | +...|..+...|...
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 89 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDM 89 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHc
Confidence 3334444555555666666665555544324444444455555555666666555555533 2 234455555555555
Q ss_pred CChHHHHHHHHHHHHCCCCCChh--------HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC---hHHHHHHHHHHh
Q 004024 486 GFGKDALMLFESMKTVGIKPDDI--------TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN---SKHYTCMVDLLG 554 (778)
Q Consensus 486 g~~~~Al~l~~~m~~~g~~pd~~--------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~ 554 (778)
|++++|++.|++..+ ..|+.. .|..+...+...|++++|.+.|+...+ +.|+ ...|..+..+|.
T Consensus 90 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 90 KNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHHHHH
Confidence 666666666655555 334322 234444445555555555555555542 2343 334444444444
Q ss_pred hcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 555 RAGRL--DEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 555 r~g~~--~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
..|+. ++|..+. ..+...+..+. ....++++.|...++++++++|+++.....|+.+..
T Consensus 165 ~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 165 NNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 43332 2221111 11122222221 223344599999999999999999888888877654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.9e-09 Score=119.96 Aligned_cols=137 Identities=12% Similarity=0.165 Sum_probs=91.4
Q ss_pred hhhhHhhhhCCC---CChhhHHHHHHHHHhCCCchHHHHHHhhCC---CCCcchHHHHHHHHHcCCC---hhHHHHHHhh
Q 004024 78 DSALHVFNSMPR---RSSVSYNAMISGYLLNGQLDPARQVFDQMP---QRDLVSWNVMISGYVRNKS---LSAARNLFEM 148 (778)
Q Consensus 78 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~f~~ 148 (778)
.+.+..|+..+. .|..+|..+|..+.+.+.++.++.+|+++. ......|..-+..-.+.|. .+.+..+|++
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 333444444332 467789999999999999999999999886 3455678888888888888 9999999998
Q ss_pred CC--C---CCcchHHHHHHHHHcCCCh--------HHHHHHHHhcc------cCC-cchHHHHHHHHH---------hcC
Q 004024 149 MP--K---RDVVSWNTMLSGYAQNGYA--------DAARRIFDRML------EKN-EISWNGLLAAYV---------QNG 199 (778)
Q Consensus 149 m~--~---~d~~~~~~li~~~~~~g~~--------~~A~~~~~~m~------~~d-~~t~~~ll~~~~---------~~g 199 (778)
.. . |++..|..-+.-..+.++. +...++|+..+ .++ ...|...+.-.. ..+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 65 2 7777888777655554443 23446777644 222 345666665433 234
Q ss_pred CHHHHHHHHHhcccC
Q 004024 200 RIEEACMLFESKANW 214 (778)
Q Consensus 200 ~~~~a~~~~~~~~~~ 214 (778)
+++.++.+|.+++..
T Consensus 209 ~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 467778888887753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-09 Score=112.06 Aligned_cols=212 Identities=10% Similarity=-0.005 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHHhccC---C-ChhHHHHHHHHHHH
Q 004024 423 ELGKQLHGQLVKVGFEAGCFVGNALLVMYC-------KCGSV-------EEAYHAFEEIVD---K-DVISWNTMIAGYAR 484 (778)
Q Consensus 423 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~-------k~g~~-------~~A~~~f~~m~~---~-d~~~~~~li~~~~~ 484 (778)
+.+..+++.+++.. +.++.+|..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 34445555554432 445666666666664 45885 999999998755 3 55689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChh--HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHh-hcCCHHH
Q 004024 485 HGFGKDALMLFESMKTVGIKPDDI--TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLG-RAGRLDE 561 (778)
Q Consensus 485 ~g~~~~Al~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~-r~g~~~e 561 (778)
.|+.++|.++|++..+ +.|+.. .|..+...+.+.|++++|..+|+...+.. .++...|........ ..|+.++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 677643 78888899999999999999999987531 234455544444422 3699999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCC-CCchHHHHHHHhhhcCCcchHHHHHHHH
Q 004024 562 AQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEM---EPE-NAGMYVLLSNLYAASGRWGDVSKVRLKM 635 (778)
Q Consensus 562 A~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l---~p~-~~~~y~~L~~~y~~~g~~~~a~~~~~~m 635 (778)
|.+++++. ...| ++..|..++..+...|+.+.|..+++++++. .|+ ....+..+++.+...|++++|..+++.+
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999887 2234 5789999999999999999999999999995 554 5667888999999999999999998888
Q ss_pred HhCC
Q 004024 636 RDRG 639 (778)
Q Consensus 636 ~~~g 639 (778)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7644
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.7e-11 Score=122.01 Aligned_cols=49 Identities=10% Similarity=-0.049 Sum_probs=21.2
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHH
Q 004024 587 LYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKM 635 (778)
Q Consensus 587 ~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m 635 (778)
..+.+..+...++++.+..|..+..+..|+.+|...|++++|.+.++..
T Consensus 256 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 256 DGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp --CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444555555555555555555555666666666666665555544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.7e-10 Score=119.30 Aligned_cols=163 Identities=12% Similarity=0.034 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-h
Q 004024 442 FVGNALLVMYCKCGSVEEAYHAFEEIVD-----KD----VISWNTMIAGYARHGFGKDALMLFESMKTV----GIKPD-D 507 (778)
Q Consensus 442 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~----g~~pd-~ 507 (778)
.+++.+...|...|++++|...|++..+ ++ ..+|+.+...|...|++++|++.|++..+. +..|+ .
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 3455566666677777777766665532 11 135666666677777777777777666551 22132 2
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHchhhc---CCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHH
Q 004024 508 ITMVGILSACSHTGLVEKGTEYFYSMNRDY---GVIPNSKHYTCMVDLLGRAGR---LDEAQNLMKNMPFEPD-AATWGA 580 (778)
Q Consensus 508 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~y~~lv~~l~r~g~---~~eA~~~~~~m~~~p~-~~~~~~ 580 (778)
.++..+...+...|+.++|.++++...+.. +-......+..+..++...|+ +++|..++++.+..|+ ..++..
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 344 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 345556666666666666666666554321 111112224455556666666 6666666666543333 224445
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc
Q 004024 581 LLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 581 Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
|...+...|+.+.|...+++++++
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 555555566666666666655554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.12 E-value=8.3e-10 Score=122.63 Aligned_cols=178 Identities=12% Similarity=0.055 Sum_probs=156.6
Q ss_pred CHHHHHHHHHhccC---CChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHH
Q 004024 456 SVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFG-KDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYF 530 (778)
Q Consensus 456 ~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~-~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~ 530 (778)
.+++|.+.+++... .+...|..+...|...|++ ++|++.|++..+ ..|+ ...+..+..++...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35667777776543 4678899999999999999 999999999998 5676 568889999999999999999999
Q ss_pred HHchhhcCCCCChHHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc--------CCh
Q 004024 531 YSMNRDYGVIPNSKHYTCMVDLLGRA---------GRLDEAQNLMKNM-PFEP-DAATWGALLGACRLY--------GKT 591 (778)
Q Consensus 531 ~~m~~~~~~~p~~~~y~~lv~~l~r~---------g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~--------g~~ 591 (778)
+... .+.|+...+..+..+|.+. |++++|++.+++. ...| +...|..+..++... |++
T Consensus 161 ~~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9987 4568888899999999999 9999999999887 4455 477999999999988 999
Q ss_pred HHHHHHHHHHHhcCC---CCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 592 ELAEKAAEVIFEMEP---ENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 592 ~~a~~~~~~~~~l~p---~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
+.|...++++++++| +++..|..++.+|...|++++|.+.++...+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999999887663
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.6e-11 Score=121.68 Aligned_cols=237 Identities=14% Similarity=0.089 Sum_probs=168.2
Q ss_pred eeehhhHHHHHHhcCChhHHHHHHHHHhhc-------CcccCcccccchHHHhcccccHHHHHHHHHHHHHc------C-
Q 004024 371 CISWAAIIAGYAQSGYSEDSLRLFIEMKRY-------GERLNRSPFTSVLSTCANLASLELGKQLHGQLVKV------G- 436 (778)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~-------g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------g- 436 (778)
..+|..+...|...|++++|+.+|+++... ........+..+...+...|++++|...+..+++. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 357888999999999999999999998873 22223345666777788899999999999888764 2
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----
Q 004024 437 FEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-----------KDVISWNTMIAGYARHGFGKDALMLFESMKTV---- 501 (778)
Q Consensus 437 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----------~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~---- 501 (778)
.+....++..+...|...|++++|...|++..+ ....+|..+...|...|++++|++.|+++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 233466788899999999999999999987743 13456888888999999999999999998774
Q ss_pred --CCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhc------CCCCC-------hHHHHHHHHHHhhcCCHHHHHHH
Q 004024 502 --GIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDY------GVIPN-------SKHYTCMVDLLGRAGRLDEAQNL 565 (778)
Q Consensus 502 --g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-------~~~y~~lv~~l~r~g~~~eA~~~ 565 (778)
+..|+. .++..+...+...|++++|.++|+.+.+.. ...|. ...+..+...+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 224433 367778888999999999999999887531 11111 22233333444455566666666
Q ss_pred HHhCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 004024 566 MKNMP-FEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 566 ~~~m~-~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~ 607 (778)
++... ..|+ ..+|..+..++...|+++.|...+++++++.|+
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 66653 3343 568999999999999999999999999999875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-09 Score=102.46 Aligned_cols=159 Identities=18% Similarity=0.101 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHh
Q 004024 442 FVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACS 518 (778)
Q Consensus 442 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~ 518 (778)
..+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.++++.+. .|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~------------ 74 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APD------------ 74 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC------------
Confidence 4455566667777777777777776654 24556666666677777777777777766652 332
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHH
Q 004024 519 HTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PF-EPDAATWGALLGACRLYGKTELAEK 596 (778)
Q Consensus 519 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-~p~~~~~~~Ll~a~~~~g~~~~a~~ 596 (778)
+...+..+...+...|++++|.+.++++ .. +.+..+|..+...+...|+.+.|..
T Consensus 75 -----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 75 -----------------------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 2233344444444455555555544443 11 2234556666666666666666666
Q ss_pred HHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 597 AAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 597 ~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.++++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 132 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 132 SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666677777777777777666665543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-09 Score=107.73 Aligned_cols=189 Identities=9% Similarity=-0.071 Sum_probs=112.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHH
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD----KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGIL 514 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll 514 (778)
|+..+..+...|.+.|++++|...|++..+ ++...|..+...|...|++++|++.|++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 445566666677777777777777776533 4555666666777777777777777777776 45553 3556666
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCCh-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYGVIPNS-----KHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD---AATWGALLGAC 585 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---~~~~~~Ll~a~ 585 (778)
..+...|++++|.+.|+...+...-.|.. ..|..+...+.+.|++++|++.+++. ...|+ ...|..+...+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 66677777777777777665432211111 34555666666666666666666655 34554 23455555544
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 586 RLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 586 ~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.. .+...++++..+.+.++..|.. ......|.+++|...++...+
T Consensus 164 ~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 164 YN-----NGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HH-----HHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhh
Confidence 32 3444455556665555333322 233344556888888777665
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.07 E-value=4.6e-09 Score=99.43 Aligned_cols=167 Identities=14% Similarity=0.046 Sum_probs=122.9
Q ss_pred cccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHH
Q 004024 408 PFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYAR 484 (778)
Q Consensus 408 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~ 484 (778)
.+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34455667788999999999998887653 45678889999999999999999999998754 467788889999999
Q ss_pred cCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 004024 485 HGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQ 563 (778)
Q Consensus 485 ~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 563 (778)
.|++++|++.|+++.+. .| +...+..+...+...|++++|.++++.+.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------------------- 139 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--------------------------- 139 (186)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------
T ss_pred hcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---------------------------
Confidence 99999999999998873 33 3334444444444445555554444443321
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 004024 564 NLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGM 611 (778)
Q Consensus 564 ~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 611 (778)
.+.+..+|..+...+...|+.+.|...+++++++.|+++..
T Consensus 140 -------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 140 -------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred -------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 12245677777788888888888888888888888877544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=9.9e-10 Score=118.43 Aligned_cols=196 Identities=10% Similarity=0.053 Sum_probs=147.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCh--
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KD-----VISWNTMIAGYARHGFGKDALMLFESMKTVGI-KPDD-- 507 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d-----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~-~pd~-- 507 (778)
..++..+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|++.|++..+..- .+|.
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 45677788889999999999988887643 22 34788889999999999999999998876311 1221
Q ss_pred --hHHHHHHHHHhccCcHHHHHHHHHHchhhc---CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CC--CCC-
Q 004024 508 --ITMVGILSACSHTGLVEKGTEYFYSMNRDY---GVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM----PF--EPD- 574 (778)
Q Consensus 508 --~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~--~p~- 574 (778)
.++..+...+...|++++|.++|+...+.. +..| ....+..+..+|.+.|++++|.+.+++. +. .|.
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 367888889999999999999999876521 2313 4667888999999999999999998876 11 222
Q ss_pred HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 575 AATWGALLGACRLYGK---TELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 575 ~~~~~~Ll~a~~~~g~---~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
...+..|...+...|+ .+.|...+++. ...|.....+..|+.+|...|++++|.+.++...+
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2235666677777788 66666666655 33344556788999999999999999999887754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.3e-08 Score=105.87 Aligned_cols=194 Identities=16% Similarity=0.091 Sum_probs=133.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--Chh
Q 004024 444 GNALLVMYCKCGSVEEAYHAFEEIVD-------K----DVISWNTMIAGYARHGFGKDALMLFESMKTVGIK--P--DDI 508 (778)
Q Consensus 444 ~~~Li~~y~k~g~~~~A~~~f~~m~~-------~----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~--p--d~~ 508 (778)
...+...|...|++++|...+++... + ....+..+...|...|++++|...+++.....-. | ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 45566778888888888888876633 1 1234566777788888888888888887763221 1 123
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHH-----HHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHH
Q 004024 509 TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYT-----CMVDLLGRAGRLDEAQNLMKNMP-FEPD-----AAT 577 (778)
Q Consensus 509 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~-----~lv~~l~r~g~~~eA~~~~~~m~-~~p~-----~~~ 577 (778)
++..+...+...|++++|..+++.......-......+. ..+..+.+.|++++|...+++.- ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 566666778888999999888887764322111111121 23345778899999999998872 2221 225
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC------chHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 578 WGALLGACRLYGKTELAEKAAEVIFEMEPENA------GMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 578 ~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~------~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+..+...+...|+.+.|...++++++..+... ..+..++.+|...|+.++|.+.++...+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66777888888999999999999887644321 3677889999999999999988777654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.3e-09 Score=122.84 Aligned_cols=165 Identities=12% Similarity=0.148 Sum_probs=145.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHH
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGI 513 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~l 513 (778)
+.+...++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++..+ +.|+ ...+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 34567888999999999999999999998855 4678999999999999999999999999998 6786 4588899
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCC
Q 004024 514 LSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGK 590 (778)
Q Consensus 514 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~ 590 (778)
..++...|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.+++. .+.|+ ...|..|..++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999998753 55 4788999999999999999999999887 56675 6799999999999999
Q ss_pred hHHHHHHHHHHHhcCCC
Q 004024 591 TELAEKAAEVIFEMEPE 607 (778)
Q Consensus 591 ~~~a~~~~~~~~~l~p~ 607 (778)
.+.|++.+++++++.|+
T Consensus 161 ~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh
Confidence 99999999999987654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.9e-08 Score=105.64 Aligned_cols=161 Identities=11% Similarity=0.058 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCChhH
Q 004024 443 VGNALLVMYCKCGSVEEAYHAFEEIVD-----KD----VISWNTMIAGYARHGFGKDALMLFESMKTV----GIKPDDIT 509 (778)
Q Consensus 443 ~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~----g~~pd~~t 509 (778)
+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|++..+. +......+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 344455555666666666655554432 11 224455555555566666666665555441 11111234
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCC---CCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHH
Q 004024 510 MVGILSACSHTGLVEKGTEYFYSMNRDYGV---IPNSKHYTCMVDLLGRAGR---LDEAQNLMKNMPFEPD-AATWGALL 582 (778)
Q Consensus 510 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~y~~lv~~l~r~g~---~~eA~~~~~~m~~~p~-~~~~~~Ll 582 (778)
+..+...+...|+.++|..+++...+...- ......+..+..++...|+ +++|+..+++.+..|+ ...+..|.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la 343 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 444455555555555555555554432211 1112233444444444555 5555555555432222 12333444
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 004024 583 GACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 583 ~a~~~~g~~~~a~~~~~~~~~ 603 (778)
..+...|+.+.|...++++++
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 444444555555555444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.4e-09 Score=107.12 Aligned_cols=198 Identities=17% Similarity=0.172 Sum_probs=129.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC-----------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------C
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD-----------KDVISWNTMIAGYARHGFGKDALMLFESMKTV------G 502 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----------~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~------g 502 (778)
...++..+...|...|++++|...|++..+ ....+|+.+...|...|++++|++.|++.... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 455667777788888888888888876642 12446777888888888888888888887763 1
Q ss_pred CCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhc-----CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC------
Q 004024 503 IKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDY-----GVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM------ 569 (778)
Q Consensus 503 ~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m------ 569 (778)
-.|+ ..++..+...+...|++++|.++|+.+.+.. +-.| ....+..+..+|.+.|++++|.+.+++.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1232 3466777778888888888888888776531 1122 3566778888888889988888887765
Q ss_pred ----CCCCC-HHHHHHHHHHHHHcCChHH------HHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 570 ----PFEPD-AATWGALLGACRLYGKTEL------AEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 570 ----~~~p~-~~~~~~Ll~a~~~~g~~~~------a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
...|. ...|..+.......+.... +...++.+....|..+..+..|+.+|...|++++|.+.++...+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12233 3344444444433333222 22222222223355566788999999999999999999887654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-08 Score=104.31 Aligned_cols=183 Identities=12% Similarity=0.010 Sum_probs=122.2
Q ss_pred HHHHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-------hhHHHH
Q 004024 449 VMYCKCGSVEEAYHAFEEIVD-----KD----VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-------DITMVG 512 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-------~~t~~~ 512 (778)
..|...|++++|...|++..+ .+ ..+|+.+...|...|++++|+..|++..+ +.|+ ..++..
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 346666777777777665532 11 34677777788888888888888877765 2221 235677
Q ss_pred HHHHHhcc-CcHHHHHHHHHHchhhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---H-----HHH
Q 004024 513 ILSACSHT-GLVEKGTEYFYSMNRDYGVIPN----SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD---A-----ATW 578 (778)
Q Consensus 513 ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---~-----~~~ 578 (778)
+...+... |++++|..+|+...+.+.-..+ ...|..+..+|.+.|++++|.+.+++. ...|+ . ..|
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 77788885 8899888888887653211111 356788899999999999999999876 22232 1 156
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch-----HHHHHHHhh--hcCCcchHHHHHH
Q 004024 579 GALLGACRLYGKTELAEKAAEVIFEMEPENAGM-----YVLLSNLYA--ASGRWGDVSKVRL 633 (778)
Q Consensus 579 ~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~-----y~~L~~~y~--~~g~~~~a~~~~~ 633 (778)
..+..++...|+++.|...+++.++++|+.... +..|...|. ..+++++|.+.++
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 777778888999999999999999999986553 334555554 4566777776664
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.1e-09 Score=96.96 Aligned_cols=140 Identities=14% Similarity=0.014 Sum_probs=95.1
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHH
Q 004024 448 LVMYCKCGSVEEAYHAFEEIVDK---DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVE 524 (778)
Q Consensus 448 i~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 524 (778)
..+|...|++++|...|+..... +...|..+...|.+.|++++|++.|++..+ +.|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~------------------ 63 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQER------------------ 63 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT------------------
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC------------------
Confidence 34455556666666666665442 234455566666666666666666666665 4443
Q ss_pred HHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHH-HHHHH
Q 004024 525 KGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEK-AAEVI 601 (778)
Q Consensus 525 ~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~-~~~~~ 601 (778)
+...|..+..+|.+.|++++|+..+++. .+.|+ +.+|..+...+...|+.+.|.+ .++++
T Consensus 64 -----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a 126 (150)
T 4ga2_A 64 -----------------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERA 126 (150)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH
T ss_pred -----------------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3445555666666666666666666655 34564 6788889999999999876555 56999
Q ss_pred HhcCCCCCchHHHHHHHhhhcCC
Q 004024 602 FEMEPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 602 ~~l~p~~~~~y~~L~~~y~~~g~ 624 (778)
++++|+++.+|.+.+.++...|+
T Consensus 127 l~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 127 AKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999988885
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-08 Score=107.72 Aligned_cols=196 Identities=11% Similarity=0.013 Sum_probs=143.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC---
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KD-----VISWNTMIAGYARHGFGKDALMLFESMKTVGI-KPD--- 506 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d-----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~-~pd--- 506 (778)
..++..+...|...|+++.|...+++..+ ++ ..+++.+...|...|++++|++.|++..+..- .++
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44667788889999999999888887643 22 34688899999999999999999998876210 112
Q ss_pred -hhHHHHHHHHHhccCcHHHHHHHHHHchhhc---CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CC--CCC-H
Q 004024 507 -DITMVGILSACSHTGLVEKGTEYFYSMNRDY---GVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM----PF--EPD-A 575 (778)
Q Consensus 507 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~--~p~-~ 575 (778)
..++..+...+...|+.++|.++|+...... +.......+..+..+|.+.|++++|.+.+++. +. .|. .
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 300 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 2367778889999999999999999887521 22223667888999999999999999998876 21 233 2
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 576 ATWGALLGACRLYGK---TELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~---~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..+..+...+...++ .+.|...+++. ...|.....+..|+.+|...|++++|.+.++...+
T Consensus 301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 301 ELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555556666677 66666666551 22344456778999999999999999999887653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.8e-08 Score=98.25 Aligned_cols=204 Identities=12% Similarity=0.009 Sum_probs=136.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----h
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-D---VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD----I 508 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d---~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~----~ 508 (778)
.+...+-.+...|.+.|++++|...|+++.+ | + ...|..+...|.+.|++++|+..|++..+ ..|+. .
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--IYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HCCCCchhHH
Confidence 3455555666777778888888888887754 3 2 45667777777888888888888888777 33432 2
Q ss_pred HHHHHHHHHhc--------cCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 004024 509 TMVGILSACSH--------TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGA 580 (778)
Q Consensus 509 t~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ 580 (778)
.+..+..++.. .|++++|...|+...+.+.-.|.. ...+..+....+.+ ...+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV--DDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH--HHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH--HHHHHHHHHHHHHH---------------HHHHHH
Confidence 34445555555 777777777777766543222211 11111110000001 112466
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHhhhc----------CCcchHHHHHHHHHhCCCccCCcee
Q 004024 581 LLGACRLYGKTELAEKAAEVIFEMEPENA---GMYVLLSNLYAAS----------GRWGDVSKVRLKMRDRGVKKVTGYS 647 (778)
Q Consensus 581 Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~y~~L~~~y~~~----------g~~~~a~~~~~~m~~~g~~k~~g~s 647 (778)
+...+...|+++.|...++++++..|+++ ..+..++.+|... |++++|.+.++...+.. |
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p--- 226 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P--- 226 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T---
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C---
Confidence 77888999999999999999999999854 4788999999877 89999999998877632 2
Q ss_pred EEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 004024 648 WLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQ 684 (778)
Q Consensus 648 ~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~ 684 (778)
.+|...+....+.++...+++
T Consensus 227 ----------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ----------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ----------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CChHHHHHHHHHHHHHHHHHH
Confidence 366677778888888777765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-07 Score=101.01 Aligned_cols=192 Identities=8% Similarity=0.010 Sum_probs=127.7
Q ss_pred hcccccHHHHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHhccC--C------ChhHHHHHHH
Q 004024 416 CANLASLELGKQLHGQLVKV----GFE--A-GCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K------DVISWNTMIA 480 (778)
Q Consensus 416 ~~~~~~~~~a~~i~~~~~~~----g~~--~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~------d~~~~~~li~ 480 (778)
+...|++++|...+....+. +.. | ....+..+...|...|++++|...+++... + ...+|..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 44445555555554444332 221 2 234556677888899999999999887632 1 1346777888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCh-hHHH-----HHHHHHhccCcHHHHHHHHHHchhhcCCCC--ChHHHHHHHHH
Q 004024 481 GYARHGFGKDALMLFESMKTVGIKPDD-ITMV-----GILSACSHTGLVEKGTEYFYSMNRDYGVIP--NSKHYTCMVDL 552 (778)
Q Consensus 481 ~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~-----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~y~~lv~~ 552 (778)
.+...|++++|...+++.....-.++. ..+. .....+...|+.++|..++........-.+ ....+..+..+
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 889999999999999988763222221 1222 223346789999999999988764321111 12346677888
Q ss_pred HhhcCCHHHHHHHHHhC-------CCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 004024 553 LGRAGRLDEAQNLMKNM-------PFEPDAA-TWGALLGACRLYGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m-------~~~p~~~-~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~ 607 (778)
+...|++++|.+.+++. +..++.. ++..+..++...|+.+.|...+++++++.+.
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 99999999999988765 1112222 5666677888999999999999999887653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-08 Score=102.74 Aligned_cols=166 Identities=8% Similarity=-0.064 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-----
Q 004024 442 FVGNALLVMYCKCGSVEEAYHAFEEIVD-----KD----VISWNTMIAGYARH-GFGKDALMLFESMKTVGIKPD----- 506 (778)
Q Consensus 442 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~-g~~~~Al~l~~~m~~~g~~pd----- 506 (778)
.+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|++.|++..+ +.|+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChH
Confidence 4556677777777777777777776543 12 34677777788875 888888888887766 3332
Q ss_pred --hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCCh-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH--
Q 004024 507 --DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNS-----KHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDAA-- 576 (778)
Q Consensus 507 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-- 576 (778)
..++..+...+...|++++|..+|+...+...-.+.. ..|..+..++...|++++|...+++. .+.|+..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 2356677778888888888888888776532211221 24666777788888888888888776 4445421
Q ss_pred ----HHHHHHHHHH--HcCChHHHHHHHHHHHhcCCCCC
Q 004024 577 ----TWGALLGACR--LYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 577 ----~~~~Ll~a~~--~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
.+..|+.++. ..++++.|...++++.+++|.+.
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 3444555554 23557777777777777777653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.82 E-value=8.5e-08 Score=97.03 Aligned_cols=199 Identities=11% Similarity=0.032 Sum_probs=142.7
Q ss_pred cccchHHHhcccccHHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC----hhHHHHH
Q 004024 408 PFTSVLSTCANLASLELGKQLHGQLVKVGFEAG---CFVGNALLVMYCKCGSVEEAYHAFEEIVD--KD----VISWNTM 478 (778)
Q Consensus 408 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d----~~~~~~l 478 (778)
.+......+...|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++..+ |+ ...|..+
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 44455566778999999999999998864 223 66778889999999999999999999865 31 3467778
Q ss_pred HHHHHH--------cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH
Q 004024 479 IAGYAR--------HGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV 550 (778)
Q Consensus 479 i~~~~~--------~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 550 (778)
..+|.. .|++++|+..|++..+ ..|+..... .+...+...... -...+..+.
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~-------------~a~~~~~~~~~~-----~~~~~~~la 155 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVD-------------DATQKIRELRAK-----LARKQYEAA 155 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHH-------------HHHHHHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHH-------------HHHHHHHHHHHH-----HHHHHHHHH
Confidence 888888 9999999999999998 567643211 111111111111 122355678
Q ss_pred HHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCCCc---hH
Q 004024 551 DLLGRAGRLDEAQNLMKNM----PFEPD-AATWGALLGACRLY----------GKTELAEKAAEVIFEMEPENAG---MY 612 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m----~~~p~-~~~~~~Ll~a~~~~----------g~~~~a~~~~~~~~~l~p~~~~---~y 612 (778)
..|.+.|++++|...+++. |-.|. ...|..+..++... |+++.|...++++++..|+++. ++
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 235 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAE 235 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 8899999999999988876 32232 34677777777755 8889999999999999999864 34
Q ss_pred HHHHHHhhhcCCcch
Q 004024 613 VLLSNLYAASGRWGD 627 (778)
Q Consensus 613 ~~L~~~y~~~g~~~~ 627 (778)
..|..++...|+.++
T Consensus 236 ~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 236 ELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhh
Confidence 455666555554443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-07 Score=92.05 Aligned_cols=181 Identities=13% Similarity=-0.013 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----HHH
Q 004024 442 FVGNALLVMYCKCGSVEEAYHAFEEIVD--KD----VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDI----TMV 511 (778)
Q Consensus 442 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~----t~~ 511 (778)
..+..+...|.+.|++++|...|+++.+ |+ ...|..+..+|...|++++|++.|++..+ ..|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHHH
Confidence 3444566678888999999999988764 32 24677788888899999999999999887 456542 233
Q ss_pred HHHHHHhc------------------cCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 004024 512 GILSACSH------------------TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEP 573 (778)
Q Consensus 512 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p 573 (778)
.+..++.. .|+.++|...|+.+.+.+.-.|.. +.. +.+.+.+.+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a--~~a----~~~l~~~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT--TDA----TKRLVFLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTH--HHH----HHHHHHHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH--HHH----HHHHHHHHHHH----------
Confidence 33333332 345555555555554432221111 110 00000000000
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHhhhcCCcchHHHHHHHHHhCCCc
Q 004024 574 DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENA---GMYVLLSNLYAASGRWGDVSKVRLKMRDRGVK 641 (778)
Q Consensus 574 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~ 641 (778)
......+...+...|+++.|...++++++..|+++ .++..++.+|...|++++|.+.++.+...+.+
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112445667889999999999999999999986 56889999999999999999999998886553
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-07 Score=97.49 Aligned_cols=168 Identities=10% Similarity=0.005 Sum_probs=123.5
Q ss_pred HHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC
Q 004024 462 HAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVI 540 (778)
Q Consensus 462 ~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 540 (778)
+.++.....+...+..+...+.+.|++++|+..|++..+ ..|+. ..+..+...+...|+.++|...++.+... .
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~ 181 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---D 181 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---G
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---h
Confidence 333333333445566666777778888888888888777 56644 46666777778888888888888777543 4
Q ss_pred CChHHHHHHH-HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CchHHHH
Q 004024 541 PNSKHYTCMV-DLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN--AGMYVLL 615 (778)
Q Consensus 541 p~~~~y~~lv-~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~--~~~y~~L 615 (778)
|+........ -.+.+.|+.++|.+.+++. ...| +...+..|..++...|+.+.|...++++++.+|++ ...+..|
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 5443333222 2356677777787777665 3345 47789999999999999999999999999999998 8899999
Q ss_pred HHHhhhcCCcchHHHHHHH
Q 004024 616 SNLYAASGRWGDVSKVRLK 634 (778)
Q Consensus 616 ~~~y~~~g~~~~a~~~~~~ 634 (778)
+.+|...|+.++|...+++
T Consensus 262 ~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 262 QEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHH
Confidence 9999999999999877654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-07 Score=81.66 Aligned_cols=127 Identities=19% Similarity=0.278 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
.|..+...|...|++++|+++|+++.+. .| +...+..+...+...|++++|..+|+.+... .|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~----------- 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DP----------- 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT-----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CC-----------
Confidence 4555666666666667777666666653 22 2334444444455555555555555544332 11
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHH
Q 004024 553 LGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVR 632 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~ 632 (778)
.+..+|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|.+.+
T Consensus 67 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 67 --------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp --------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred --------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 123334444444444444455555555555555544444455555555555555555554
Q ss_pred HHHH
Q 004024 633 LKMR 636 (778)
Q Consensus 633 ~~m~ 636 (778)
+.+.
T Consensus 127 ~~~~ 130 (136)
T 2fo7_A 127 QKAL 130 (136)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-07 Score=109.55 Aligned_cols=167 Identities=10% Similarity=-0.050 Sum_probs=89.8
Q ss_pred HhcCCHHHHHHHHHhcc--------C---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhc
Q 004024 452 CKCGSVEEAYHAFEEIV--------D---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSH 519 (778)
Q Consensus 452 ~k~g~~~~A~~~f~~m~--------~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~ 519 (778)
...|++++|.+.|++.. + .+...|..+...|.+.|++++|++.|++..+ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 34455555555555544 1 2344555555555555666666666655555 34432 344455555555
Q ss_pred cCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHH
Q 004024 520 TGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEK 596 (778)
Q Consensus 520 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~ 596 (778)
.|++++|.+.|+...+. .| +...|..+..+|.+.|++++ ++.+++. ...|+ ...|..+..++...|+++.|..
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 56666666655555432 23 34455555556666666665 5555544 23332 4456666666666666666666
Q ss_pred HHHHHHhcCCCCCchHHHHHHHhhhcCC
Q 004024 597 AAEVIFEMEPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 597 ~~~~~~~l~p~~~~~y~~L~~~y~~~g~ 624 (778)
.++++++++|+++.++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 6666666666666666666666655554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-07 Score=96.20 Aligned_cols=165 Identities=16% Similarity=0.111 Sum_probs=104.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------C
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD-------K----DVISWNTMIAGYARHGFGKDALMLFESMKTV------G 502 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~------g 502 (778)
...++..+...|...|++++|.+.|++... + ...+|..+...|...|++++|++.|++..+. +
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345667777888888888888888876632 1 2456777888888888888888888888763 1
Q ss_pred CCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhc------CCCCC-hHHHHHHHHHHhh------cCCHHHHHHHHHh
Q 004024 503 IKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDY------GVIPN-SKHYTCMVDLLGR------AGRLDEAQNLMKN 568 (778)
Q Consensus 503 ~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~y~~lv~~l~r------~g~~~eA~~~~~~ 568 (778)
-.|+ ..++..+...+...|++++|.++|+.+.+.. ...|. ...|..+...+.. ...+.++...++.
T Consensus 164 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------C
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Confidence 1333 3467777788888888888888888776531 11222 2223233333222 3345566666666
Q ss_pred CC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 569 MP-FEPD-AATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 569 m~-~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
.. ..|+ ..+|..|...+...|+++.|...+++++++
T Consensus 244 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 54 2233 457888999999999999999999998875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-07 Score=83.25 Aligned_cols=95 Identities=19% Similarity=0.255 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNM-PFE-PDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~ 622 (778)
.|..+...+.+.|++++|.++++++ ... .+..+|..+...+...|+.+.|...++++++..|.++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4667788888889999999888876 223 35778888999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCC
Q 004024 623 GRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 623 g~~~~a~~~~~~m~~~g 639 (778)
|++++|.+.++.+.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999998887654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.4e-08 Score=89.96 Aligned_cols=119 Identities=13% Similarity=0.016 Sum_probs=96.6
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTE 592 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~ 592 (778)
.+...|++++|+..+.... ...|+ ...+-.+..+|.+.|++++|++.+++. .+.|+ +.+|..+...+...|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 3445677888888777654 33443 334556888899999999999999877 45664 779999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHH-HHHHHh
Q 004024 593 LAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKV-RLKMRD 637 (778)
Q Consensus 593 ~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~-~~~m~~ 637 (778)
.|+..++++++++|+++.++..|+.+|...|++++|.+. ++...+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876 455443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-06 Score=89.46 Aligned_cols=174 Identities=9% Similarity=-0.012 Sum_probs=111.7
Q ss_pred HHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchh
Q 004024 460 AYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNR 535 (778)
Q Consensus 460 A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 535 (778)
|...|++..+ ++..++..+..++...|+.++|++++.+.+..|-.++. ..+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5566665542 44555556667777777777777777776654432233 3455666677777777777777777754
Q ss_pred hcCCCC-----ChHHHHHHHHH--HhhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-
Q 004024 536 DYGVIP-----NSKHYTCMVDL--LGRAG--RLDEAQNLMKNM-PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEM- 604 (778)
Q Consensus 536 ~~~~~p-----~~~~y~~lv~~--l~r~g--~~~eA~~~~~~m-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l- 604 (778)
. .| +..+...|..+ ....| +.++|..+|+++ ...|+...-..|+.++...|++++|+..++.+.++
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 44 23333444433 22223 788888888877 22344223333444677778888888888877776
Q ss_pred ---------CCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 605 ---------EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 605 ---------~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
+|+++.++..++.++...|+ +|.+++..+++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 47787777777777777786 788888888764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.1e-07 Score=93.83 Aligned_cols=219 Identities=11% Similarity=0.040 Sum_probs=151.1
Q ss_pred cCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004024 384 SGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHA 463 (778)
Q Consensus 384 ~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 463 (778)
.|++++|.+++++..+.. +. .+ +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~--~~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT--SF------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC--CS------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc--cc------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 466778888887766532 11 11 11136777777766554 4567788999998888
Q ss_pred HHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hhHHHHHHHHHhccCcHHHHHHH
Q 004024 464 FEEIVD-----KD----VISWNTMIAGYARHGFGKDALMLFESMKTVGI---KPD--DITMVGILSACSHTGLVEKGTEY 529 (778)
Q Consensus 464 f~~m~~-----~d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~---~pd--~~t~~~ll~a~~~~g~~~~a~~~ 529 (778)
|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...+.. |++++|+++
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 887643 12 34788888899999999999999998765211 122 2466777778888 999999999
Q ss_pred HHHchhhcCCC---C-ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChHHHHHH
Q 004024 530 FYSMNRDYGVI---P-NSKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD----AATWGALLGACRLYGKTELAEKA 597 (778)
Q Consensus 530 ~~~m~~~~~~~---p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~ 597 (778)
|+.....+.-. + ....+..+..+|.+.|++++|++.+++. +-.++ ...|..+...+...|+++.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99876532111 1 1467888899999999999999998876 11122 22566666777778999999999
Q ss_pred HHHHHhcCCCCCch-----HHHHHHHhhhcCCcchHHH
Q 004024 598 AEVIFEMEPENAGM-----YVLLSNLYAASGRWGDVSK 630 (778)
Q Consensus 598 ~~~~~~l~p~~~~~-----y~~L~~~y~~~g~~~~a~~ 630 (778)
+++.+ ++|..... ...++..| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99976543 33445545 4566555544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.61 E-value=5e-07 Score=104.86 Aligned_cols=193 Identities=9% Similarity=0.008 Sum_probs=149.8
Q ss_pred cccccHHHHHHHHHHHHH-------cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcC
Q 004024 417 ANLASLELGKQLHGQLVK-------VGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHG 486 (778)
Q Consensus 417 ~~~~~~~~a~~i~~~~~~-------~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g 486 (778)
...|+.++|.+.+..+++ ...+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 566777777777777761 12245667788888999999999999999998865 46788999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHH
Q 004024 487 FGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQN 564 (778)
Q Consensus 487 ~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~ 564 (778)
++++|++.|++..+ +.|+. ..+..+..++...|++++ .+.|+...+. .| +...|..+..+|.+.|++++|.+
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998 67754 578888889999999999 9999988753 44 56788899999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 565 LMKNM-PFEPD-AATWGALLGACRLYGK-----TELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 565 ~~~~m-~~~p~-~~~~~~Ll~a~~~~g~-----~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
.+++. ...|+ ...|..+..++...++ .+...++.+.+.++.++++..+..-
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~ 613 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIR 613 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 99998 56787 5578777777655554 3556666666666766665554433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.7e-07 Score=87.11 Aligned_cols=154 Identities=10% Similarity=0.027 Sum_probs=97.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC
Q 004024 445 NALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTG 521 (778)
Q Consensus 445 ~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 521 (778)
..+...+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++... ..|+. .+..++..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~-~~~~~~~~----- 81 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDN-SYKSLIAK----- 81 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCH-HHHHHHHH-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCCh-HHHHHHHH-----
Confidence 3445556666777777776666644 3455666666666666666666666666544 23322 11111100
Q ss_pred cHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHH
Q 004024 522 LVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAE 599 (778)
Q Consensus 522 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~ 599 (778)
+. +.+.+...+|.+.+++. ...| +...|..+..++...|+++.|...++
T Consensus 82 ----------------------------~~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 82 ----------------------------LE-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp ----------------------------HH-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----------------------------HH-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 00 01111112234444433 2345 47788888899999999999999999
Q ss_pred HHHhcCCCC--CchHHHHHHHhhhcCCcchHHHHHHHH
Q 004024 600 VIFEMEPEN--AGMYVLLSNLYAASGRWGDVSKVRLKM 635 (778)
Q Consensus 600 ~~~~l~p~~--~~~y~~L~~~y~~~g~~~~a~~~~~~m 635 (778)
++++++|+. +..+..|+.+|...|+.++|...++..
T Consensus 133 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 133 NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 999999875 558889999999999999998887654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-07 Score=85.34 Aligned_cols=101 Identities=8% Similarity=-0.014 Sum_probs=90.3
Q ss_pred CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 004024 538 GVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVL 614 (778)
Q Consensus 538 ~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~ 614 (778)
.+.| +...+..+...+.+.|++++|.+.+++. ...| ++..|..|..++...|+++.|...++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 5566 4567778888999999999999999887 4456 47899999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHhC
Q 004024 615 LSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 615 L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
++.+|...|++++|.+.++...+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999887764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=5.1e-07 Score=102.66 Aligned_cols=158 Identities=11% Similarity=0.088 Sum_probs=119.4
Q ss_pred cCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHH
Q 004024 454 CGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEY 529 (778)
Q Consensus 454 ~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~ 529 (778)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3677888888887754 3567788888888999999999999998887 5665 45777788888899999999999
Q ss_pred HHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChHHHHHHHHHHHh
Q 004024 530 FYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLY---GKTELAEKAAEVIFE 603 (778)
Q Consensus 530 ~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~---g~~~~a~~~~~~~~~ 603 (778)
|+...+. .| +...|..+..+|.+.|++++|.+.+++. ...| +..+|..+..++... |+.+.|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9888754 34 4678888999999999999999999876 3445 467888999999999 999999999999999
Q ss_pred cCCCCCchHHHHH
Q 004024 604 MEPENAGMYVLLS 616 (778)
Q Consensus 604 l~p~~~~~y~~L~ 616 (778)
.+|++...+..|+
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988888776
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.57 E-value=2e-06 Score=83.88 Aligned_cols=171 Identities=8% Similarity=-0.066 Sum_probs=122.8
Q ss_pred HHHHHHhccC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC----cHHHHHHHHHHch
Q 004024 460 AYHAFEEIVD-KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTG----LVEKGTEYFYSMN 534 (778)
Q Consensus 460 A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 534 (778)
|.+.|++..+ .++.++..+...|...|+.++|++.|++..+.| +...+..+...+.. | +.++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444444432 456667777777777777777777777777654 34455555555555 5 6777777777765
Q ss_pred hhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 004024 535 RDYGVIPNSKHYTCMVDLLGR----AGRLDEAQNLMKNM-PFEPD---AATWGALLGACRL----YGKTELAEKAAEVIF 602 (778)
Q Consensus 535 ~~~~~~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m-~~~p~---~~~~~~Ll~a~~~----~g~~~~a~~~~~~~~ 602 (778)
+. + +...+..|..+|.. .+++++|++.+++. ...|+ +..+..|...+.. .+|.++|...++++.
T Consensus 81 ~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 42 2 45566667777766 77888898888877 33443 6788888888877 789999999999999
Q ss_pred hcCCCCCchHHHHHHHhhhc-C-----CcchHHHHHHHHHhCC
Q 004024 603 EMEPENAGMYVLLSNLYAAS-G-----RWGDVSKVRLKMRDRG 639 (778)
Q Consensus 603 ~l~p~~~~~y~~L~~~y~~~-g-----~~~~a~~~~~~m~~~g 639 (778)
++ |.++..+..|+.+|... | ++++|.+.++...+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88 77778899999999764 3 8999999998887765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.55 E-value=7.9e-07 Score=90.59 Aligned_cols=167 Identities=12% Similarity=0.085 Sum_probs=122.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----Chh
Q 004024 439 AGCFVGNALLVMYCKCGSVEEAYHAFEEIVDK-----DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-----DDI 508 (778)
Q Consensus 439 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-----d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-----d~~ 508 (778)
++......+...|...|++++|++++.+.... +...+-.++..|.+.|+.+.|.+.+++|.+ ..| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchH
Confidence 34444457778888889999999999887443 445677778889999999999999999988 677 366
Q ss_pred HHHHHHHH--HhccC--cHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-C----------CC
Q 004024 509 TMVGILSA--CSHTG--LVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMP-F----------EP 573 (778)
Q Consensus 509 t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~----------~p 573 (778)
+...+..+ ....| ...+|..+|+++... .|+...-..+..++.+.|++++|++.++.+- . .|
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p 252 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence 66666666 33334 899999999998755 3442333344447889999999999987641 1 25
Q ss_pred C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 004024 574 D-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMY 612 (778)
Q Consensus 574 ~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y 612 (778)
+ +.+...++......|+ .|.+.++++.+..|+++...
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 4 5566666666666776 78999999999999996544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.6e-07 Score=84.47 Aligned_cols=100 Identities=9% Similarity=0.097 Sum_probs=87.3
Q ss_pred CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 004024 538 GVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVL 614 (778)
Q Consensus 538 ~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~ 614 (778)
.+.| +...+..+...+.+.|++++|...+++. ...| ++..|..+..++...|+++.|...++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3445 4556777888899999999999999876 3445 57899999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHh
Q 004024 615 LSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 615 L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++.+|...|++++|.+.++...+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999887765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.7e-07 Score=80.91 Aligned_cols=94 Identities=9% Similarity=0.065 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhh
Q 004024 544 KHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAA 621 (778)
Q Consensus 544 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~ 621 (778)
+.+.-....|.+.|++++|++.+++. ...| ++.+|..+..++...|+++.|+..++++++++|+++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44555666677777777777776665 3344 356677777777777777777777777777777777777777777777
Q ss_pred cCCcchHHHHHHHHHh
Q 004024 622 SGRWGDVSKVRLKMRD 637 (778)
Q Consensus 622 ~g~~~~a~~~~~~m~~ 637 (778)
.|++++|.+.++...+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777777777766554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.54 E-value=9.6e-07 Score=85.89 Aligned_cols=155 Identities=8% Similarity=0.031 Sum_probs=116.1
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC---ChhHHHH----------------HHHHHHHcCChHHHHHHHHHHHHCCCCCC-h
Q 004024 448 LVMYCKCGSVEEAYHAFEEIVDK---DVISWNT----------------MIAGYARHGFGKDALMLFESMKTVGIKPD-D 507 (778)
Q Consensus 448 i~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~----------------li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~ 507 (778)
...+.+.|++++|...|++..+. +...|.. +...|...|++++|+..|++..+ +.|+ .
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH
Confidence 34566778888888888877542 3345555 88889999999999999999988 6675 4
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCC--HHHHHHHHHhCCCCCCHH--HHHHHH
Q 004024 508 ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGR--LDEAQNLMKNMPFEPDAA--TWGALL 582 (778)
Q Consensus 508 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~--~~eA~~~~~~m~~~p~~~--~~~~Ll 582 (778)
..+..+...+...|++++|...|+...+. .| +...|..+..+|...|. .+++...++... .|++. .|..+.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 57788888899999999999999988753 45 46778888888766654 455666666653 44443 455556
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 583 GACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 583 ~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
.++...|+++.|+..+++++++.|++
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 66777899999999999999999975
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.5e-07 Score=102.43 Aligned_cols=150 Identities=16% Similarity=0.056 Sum_probs=114.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHH
Q 004024 485 HGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEA 562 (778)
Q Consensus 485 ~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA 562 (778)
.|+.++|++.|++..+ ..|+ ...+..+...+...|++++|.+.|+...+ +.| +...|..+..+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4789999999999887 5675 56788888899999999999999999874 455 477889999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc---CCcchHHHHHHHHHh
Q 004024 563 QNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS---GRWGDVSKVRLKMRD 637 (778)
Q Consensus 563 ~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~---g~~~~a~~~~~~m~~ 637 (778)
.+.+++. ...| +...|..+..++...|+.+.|...++++++++|+++..+..++.+|... |++++|.+.++...+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999887 3445 4779999999999999999999999999999999999999999999999 888888888777654
Q ss_pred CC
Q 004024 638 RG 639 (778)
Q Consensus 638 ~g 639 (778)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 43
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3.6e-06 Score=82.83 Aligned_cols=180 Identities=13% Similarity=0.015 Sum_probs=128.2
Q ss_pred chHHHhcccccHHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCh----hHHHHHHHHH
Q 004024 411 SVLSTCANLASLELGKQLHGQLVKVGFEA--GCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDV----ISWNTMIAGY 482 (778)
Q Consensus 411 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~----~~~~~li~~~ 482 (778)
.....+...|++++|...+..+++..-.. ....+..+...|.+.|++++|...|++..+ |+. ..|..+..+|
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence 34456778899999999999998864221 235677789999999999999999999864 332 1455555555
Q ss_pred HH------------------cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChH
Q 004024 483 AR------------------HGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSK 544 (778)
Q Consensus 483 ~~------------------~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 544 (778)
.. .|+.++|+..|++..+ ..|+....... ......+... ...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a-------------~~~l~~~~~~-----~~~ 148 (225)
T 2yhc_A 89 MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDA-------------TKRLVFLKDR-----LAK 148 (225)
T ss_dssp HHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHH-------------HHHHHHHHHH-----HHH
T ss_pred HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHH-------------HHHHHHHHHH-----HHH
Confidence 54 5789999999999998 56775422111 1111111100 011
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG 610 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 610 (778)
..-.+...|.+.|++++|...++++ ...|+ ...|..+..++...|+.+.|...++++....|++..
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 2235678889999999999998876 22343 257888899999999999999999999999888754
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.9e-06 Score=83.95 Aligned_cols=190 Identities=15% Similarity=0.126 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHhccC---CChhHHHHHHHHH----HHc---CChHHHHHHHHHHHHCCCCC-ChhH
Q 004024 443 VGNALLVMYCKCG--SVEEAYHAFEEIVD---KDVISWNTMIAGY----ARH---GFGKDALMLFESMKTVGIKP-DDIT 509 (778)
Q Consensus 443 ~~~~Li~~y~k~g--~~~~A~~~f~~m~~---~d~~~~~~li~~~----~~~---g~~~~Al~l~~~m~~~g~~p-d~~t 509 (778)
+++.--..+...| +++++++.++.+.. ++..+|+.-...+ ... +++++++++++++.+ ..| |...
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~--~~pkny~a 146 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS--SDPKNHHV 146 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 3344444444445 66666666666543 3444555543333 333 566666666666666 344 3445
Q ss_pred HHHHHHHHhccCcHH--HHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCC------HHHHHHHHHhC-CCCC-CHHHH
Q 004024 510 MVGILSACSHTGLVE--KGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGR------LDEAQNLMKNM-PFEP-DAATW 578 (778)
Q Consensus 510 ~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~------~~eA~~~~~~m-~~~p-~~~~~ 578 (778)
|..-.....+.|..+ +++++++.+.+. .| |-..|+.-..++.+.|+ ++++++.++++ ...| |...|
T Consensus 147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW 223 (306)
T 3dra_A 147 WSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTW 223 (306)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHH
Confidence 555555555556655 666666666543 22 33334444444444444 67777776655 2334 46677
Q ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHhcC---CCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 579 GALLGACRLYGK-TELAEKAAEVIFEME---PENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 579 ~~Ll~a~~~~g~-~~~a~~~~~~~~~l~---p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+.+...+...|. .+.....++++++++ |.++.++..|+.+|.+.|+.++|.++++.+.+
T Consensus 224 ~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 224 NYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 777777777665 334555666666665 66777777777777777777777777777664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-06 Score=82.10 Aligned_cols=155 Identities=12% Similarity=0.007 Sum_probs=94.4
Q ss_pred cchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHH-HHHcC
Q 004024 410 TSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--KDVISWNTMIAG-YARHG 486 (778)
Q Consensus 410 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~-~~~~g 486 (778)
......+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...|++... |+...+..+... +...+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc
Confidence 344556778999999999999887653 55678888999999999999999999999865 433333222111 12222
Q ss_pred ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 004024 487 FGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLM 566 (778)
Q Consensus 487 ~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~ 566 (778)
...+|+..|++..+ ..|+. ...+..+..+|.+.|++++|.+.+
T Consensus 89 ~~~~a~~~~~~al~--~~P~~-----------------------------------~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 89 AESPELKRLEQELA--ANPDN-----------------------------------FELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp TSCHHHHHHHHHHH--HSTTC-----------------------------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHH--hCCCC-----------------------------------HHHHHHHHHHHHHcccHHHHHHHH
Confidence 33345666666665 44532 333444444444555555555544
Q ss_pred HhC-CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 567 KNM-PFEPD---AATWGALLGACRLYGKTELAEKAAEVIF 602 (778)
Q Consensus 567 ~~m-~~~p~---~~~~~~Ll~a~~~~g~~~~a~~~~~~~~ 602 (778)
+++ ...|+ ...|..|...+...|+.+.|...+++.+
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 443 22332 3355556666666666666666665554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.47 E-value=6e-07 Score=93.30 Aligned_cols=197 Identities=9% Similarity=-0.054 Sum_probs=149.3
Q ss_pred ccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 418 NLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFES 497 (778)
Q Consensus 418 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~ 497 (778)
..|++++|.+++....+..-. . .+...|++++|...|.+. ...|...|++++|++.|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 357888899888887664211 1 122158899998888763 5678899999999999998
Q ss_pred HHHCCC---CC-C-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCC--CC--ChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 004024 498 MKTVGI---KP-D-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGV--IP--NSKHYTCMVDLLGRAGRLDEAQNLMKN 568 (778)
Q Consensus 498 m~~~g~---~p-d-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~ 568 (778)
..+... .| . ..+|..+...+...|++++|..+|+.....+.- .| ....+..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 866211 11 1 236888888999999999999999987654211 12 24678888999988 999999999887
Q ss_pred C----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc------hHHHHHHHhhhcCCcchHHHHHHH
Q 004024 569 M----PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG------MYVLLSNLYAASGRWGDVSKVRLK 634 (778)
Q Consensus 569 m----~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~------~y~~L~~~y~~~g~~~~a~~~~~~ 634 (778)
. +-..+ ..+|..+...+...|+++.|...+++++++.|++.. .+..++.+|...|++++|.+.++.
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 11111 457888899999999999999999999998776542 667788889999999999999887
Q ss_pred HH
Q 004024 635 MR 636 (778)
Q Consensus 635 m~ 636 (778)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 65
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.7e-06 Score=78.26 Aligned_cols=100 Identities=15% Similarity=0.078 Sum_probs=85.9
Q ss_pred CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 004024 538 GVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVL 614 (778)
Q Consensus 538 ~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~ 614 (778)
.+.| +...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3444 3455666778888999999999998876 3445 57789999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHh
Q 004024 615 LSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 615 L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++.+|...|++++|.+.++...+
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999988765
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.1e-06 Score=88.10 Aligned_cols=161 Identities=9% Similarity=-0.035 Sum_probs=127.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHH-HH
Q 004024 438 EAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMV-GI 513 (778)
Q Consensus 438 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~-~l 513 (778)
+.+......+...+.+.|++++|...|++... | +...+..+...|.+.|++++|+..+++... ..|+..... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 55666677788888999999999999998754 3 667888899999999999999999998876 467654322 22
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHc
Q 004024 514 LSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD---AATWGALLGACRLY 588 (778)
Q Consensus 514 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---~~~~~~Ll~a~~~~ 588 (778)
...+...|..++|...++..... .| +...+..+..+|.+.|++++|++.++++ ...|+ ...|..|+..+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 23466777788888888887653 34 5778888999999999999999998877 33443 66899999999999
Q ss_pred CChHHHHHHHHHHHh
Q 004024 589 GKTELAEKAAEVIFE 603 (778)
Q Consensus 589 g~~~~a~~~~~~~~~ 603 (778)
|+.+.|...+++.+.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999988764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-06 Score=77.62 Aligned_cols=107 Identities=11% Similarity=0.041 Sum_probs=75.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 004024 510 MVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACR 586 (778)
Q Consensus 510 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~ 586 (778)
+......+.+.|++++|.+.|+...+. .| +...|..+..+|.+.|++++|++.+++. .+.|+ ...|..+..++.
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 334444455555555555555554432 22 3555666667777777777777776665 33454 678999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 587 LYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 587 ~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
..|+++.|...++++++++|+++.++..|++++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999998888887654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.3e-06 Score=81.96 Aligned_cols=121 Identities=12% Similarity=-0.005 Sum_probs=87.7
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 004024 513 ILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGK 590 (778)
Q Consensus 513 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~ 590 (778)
+...+...|++++|.+.|... +.|+...|..+...|.+.|++++|.+.+++. ...| +..+|..+..++...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 334455566666666666554 2445666666777777777777777776655 2233 46678888888888888
Q ss_pred hHHHHHHHHHHHhcCCCCC----------------chHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 591 TELAEKAAEVIFEMEPENA----------------GMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 591 ~~~a~~~~~~~~~l~p~~~----------------~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
++.|...+++++++.|++. ..+..++.+|...|++++|.+.++...+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888888888888888777 78888889999999999998888877664
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.7e-06 Score=85.74 Aligned_cols=164 Identities=7% Similarity=-0.106 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHhccCcHHHHHHHHHHchhhcC--CCCC--h
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-----ITMVGILSACSHTGLVEKGTEYFYSMNRDYG--VIPN--S 543 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~--~ 543 (778)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|.++|........ ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788889999999988887774322111 1233344556778899999998887764321 1121 4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------C
Q 004024 544 KHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD-----AATWGALLGACRLYGKTELAEKAAEVIFEMEPE------N 608 (778)
Q Consensus 544 ~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~-----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~------~ 608 (778)
..|+.+...|...|++++|.+.+++. ...|+ ..+|..+...|...|+++.|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888899999999999999888765 11222 258888999999999999999999999987543 1
Q ss_pred CchHHHHHHHhhhcCCcchH-HHHHHHHH
Q 004024 609 AGMYVLLSNLYAASGRWGDV-SKVRLKMR 636 (778)
Q Consensus 609 ~~~y~~L~~~y~~~g~~~~a-~~~~~~m~ 636 (778)
+..|..++.+|...|++++| ...++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45788999999999999999 77565543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=6.7e-06 Score=79.74 Aligned_cols=144 Identities=10% Similarity=-0.090 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCc
Q 004024 444 GNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGL 522 (778)
Q Consensus 444 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~ 522 (778)
+..+...|.+.|++++|...|++...++...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHccc
Confidence 344666788889999999999988888888888888889999999999999988887 3453 4456666667777777
Q ss_pred HHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004024 523 VEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPD-AATWGALLGACRLYGKTELAEKAAEVI 601 (778)
Q Consensus 523 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~ 601 (778)
+++|.+.|+...+...-.+... +...| +...|+ ..+|..+..++...|+.+.|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777776654311111000 00000 012333 357778888888888888899999999
Q ss_pred HhcCCCC
Q 004024 602 FEMEPEN 608 (778)
Q Consensus 602 ~~l~p~~ 608 (778)
+++.|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 8888876
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.40 E-value=4e-06 Score=81.46 Aligned_cols=181 Identities=14% Similarity=0.112 Sum_probs=118.6
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 004024 378 IAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSV 457 (778)
Q Consensus 378 i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 457 (778)
...+.+.|++++|+..|++..... |+........ ... ........+.+.+...|.+.|++
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-~~~-----------------~~~~~~~~~~~~lg~~~~~~g~~ 70 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-NVD-----------------KNSEISSKLATELALAYKKNRNY 70 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-HSC-----------------TTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-hhc-----------------chhhhhHHHHHHHHHHHHHCCCH
Confidence 345667788888888888877642 3322110000 000 00011223344588889999999
Q ss_pred HHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCc--HHHHHHHHH
Q 004024 458 EEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGL--VEKGTEYFY 531 (778)
Q Consensus 458 ~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~--~~~a~~~~~ 531 (778)
++|...|++..+ .++..|..+...|...|++++|++.|++..+ +.|+. .++..+..++...|. .+.+...+.
T Consensus 71 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 148 (208)
T 3urz_A 71 DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYK 148 (208)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999998854 4678899999999999999999999999998 67864 467777667655554 334455554
Q ss_pred HchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 004024 532 SMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDAATWGALLG 583 (778)
Q Consensus 532 ~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll~ 583 (778)
... ...|....+..+...+...|++++|...+++. ...|+......|..
T Consensus 149 ~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 149 KLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 432 22222223334555667789999999999886 67888766655543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-05 Score=80.82 Aligned_cols=159 Identities=8% Similarity=-0.094 Sum_probs=116.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-CCCChh----HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC----hHHHHH
Q 004024 478 MIAGYARHGFGKDALMLFESMKTVG-IKPDDI----TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN----SKHYTC 548 (778)
Q Consensus 478 li~~~~~~g~~~~Al~l~~~m~~~g-~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~ 548 (778)
.+..+...|++++|++++++..+.. ..|+.. .+..+...+...|++++|..+|+.......-.++ ...|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3667788889999999988887632 122211 2224555667778889999988888763222223 346888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-------CCC-CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CchHH
Q 004024 549 MVDLLGRAGRLDEAQNLMKNM-------PFE-PD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN------AGMYV 613 (778)
Q Consensus 549 lv~~l~r~g~~~eA~~~~~~m-------~~~-p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~------~~~y~ 613 (778)
+...|.+.|++++|++.++++ +.. |. ..+|..+...|...|+++.|...+++++++.+.. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 889999999999988887765 111 22 3478889999999999999999999999876443 56789
Q ss_pred HHHHHhhhcCC-cchHHHHHHHHH
Q 004024 614 LLSNLYAASGR-WGDVSKVRLKMR 636 (778)
Q Consensus 614 ~L~~~y~~~g~-~~~a~~~~~~m~ 636 (778)
.++.+|...|+ +++|.+.++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999996 599998877654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.37 E-value=3.4e-05 Score=85.40 Aligned_cols=361 Identities=9% Similarity=0.016 Sum_probs=171.5
Q ss_pred HHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCC--CCChhHHHHHHHHHhcCCC-HHHHHHHHhhCC---
Q 004024 201 IEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMP--VRDEVSWNTMITGYAQNNY-LAEAQRLFEEAP--- 274 (778)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~y~~~g~-~~~A~~~f~~m~--- 274 (778)
++.|+.+|++++.. +- .|.++.++.+|++.. .|++..|...+..-.+.+. .+....+|+...
T Consensus 11 i~~aR~vyer~l~~-----------~P-~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v 78 (493)
T 2uy1_A 11 LSSPSAIMEHARRL-----------YM-SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF 78 (493)
T ss_dssp -CCHHHHHHHHHHH-----------HH-TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHH-----------CC-CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc
Confidence 66666666665431 11 177888888887766 4677777777766655542 234455555432
Q ss_pred ---CCCeehHHHHHHHHH----hcCChHHHHHHHHhCCCCCcchHHHHHHHHhc---cCChHHHHHHHHhhccccccHHH
Q 004024 275 ---VKDVFTWTAMVSGYV----QNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQ---TKRMDMARELFEAMTCKNVASWN 344 (778)
Q Consensus 275 ---~~d~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~---~~~~~~a~~i~~~~~~~~~~~~~ 344 (778)
..+...|...+..+. .+|+.+.+..+|++...........+-..|.. ..+...+..+....
T Consensus 79 g~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~--------- 149 (493)
T 2uy1_A 79 ENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT--------- 149 (493)
T ss_dssp TTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH---------
T ss_pred CCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH---------
Confidence 124456666665543 23556667777776654211111111111111 11111111111110
Q ss_pred HHHHHHHhcCChhHHHHHhhhCCC----CCeeehhhHHHHHHhcC--C-----hhHHHHHHHHHhhcCcccCcccccchH
Q 004024 345 TMITGYAQSGEITHARNLFDRMPQ----HDCISWAAIIAGYAQSG--Y-----SEDSLRLFIEMKRYGERLNRSPFTSVL 413 (778)
Q Consensus 345 ~Li~~y~k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g--~-----~~~Al~l~~~m~~~g~~pd~~t~~~ll 413 (778)
.+.+..|+.+++.+.. .+...|...+.--..++ - .+.+..+|+++.... +-+...|...+
T Consensus 150 --------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya 220 (493)
T 2uy1_A 150 --------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYS 220 (493)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 0112222222222110 12223433333211111 0 123445565555432 11222333333
Q ss_pred HHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH-HHHHHhc------------cCCChhHHHHHHH
Q 004024 414 STCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEA-YHAFEEI------------VDKDVISWNTMIA 480 (778)
Q Consensus 414 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A-~~~f~~m------------~~~d~~~~~~li~ 480 (778)
.-+...|+++.|+.+++..++. +.+..++.. |+...+.++. ..+.+.. .......|...+.
T Consensus 221 ~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~ 294 (493)
T 2uy1_A 221 EYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLN 294 (493)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHH
Confidence 4444556666666666666665 333333322 2221111111 0111110 0011245666666
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH-hccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCH
Q 004024 481 GYARHGFGKDALMLFESMKTVGIKPDDITMVGILSAC-SHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRL 559 (778)
Q Consensus 481 ~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 559 (778)
.+.++|..+.|..+|++. .. ..++...|......- ...++.+.|..+|+...+.++-. ...+...++...+.|..
T Consensus 295 ~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~--~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 295 YVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS--TLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCH
Confidence 666677778888888777 21 111222332211111 12335778888888777654333 33455667777777888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 560 DEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 560 ~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
+.|..++++.+ .....|...+.-=..+|+.+.+..++++..+
T Consensus 371 ~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888773 2456777777666677777777776666553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-05 Score=87.90 Aligned_cols=357 Identities=11% Similarity=0.050 Sum_probs=189.8
Q ss_pred hCC-CchHHHHHHhhCCCCCcchHHHHHHHHHcCCChhHHHHHHhhCC--CCCcchHHHHHHHHHcCCC-hHHHHHHHHh
Q 004024 104 LNG-QLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMP--KRDVVSWNTMLSGYAQNGY-ADAARRIFDR 179 (778)
Q Consensus 104 ~~g-~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~-~~~A~~~~~~ 179 (778)
+.| .++.|+.+|+++.. .+-. |+++.+..+|++.. .|++..|..-+.-..+.+. .+....+|+.
T Consensus 6 ~~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp ------CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred HcCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 346 37788888877541 1111 88999999998865 3788888888877776663 3456667776
Q ss_pred cc---c---CCcchHHHHHHHHH----hcCCHHHHHHHHHhcccCCccHhhHHHHHHHhc---CChhHHHHHHhhCCCCC
Q 004024 180 ML---E---KNEISWNGLLAAYV----QNGRIEEACMLFESKANWEVVSWNSLMGGFVKQ---KRLGDAKWIFDRMPVRD 246 (778)
Q Consensus 180 m~---~---~d~~t~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~d 246 (778)
.+ . .+...|...+.-+. ..++++.++.+|++++.........+-..|... .....+.++...
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~----- 148 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD----- 148 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH-----
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHH-----
Confidence 55 2 24456666665543 345678888898888774332223333333221 111112221111
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHhhCC----CCCeehHHHHHHHHHhcCC-------hHHHHHHHHhCCC--C-CcchH
Q 004024 247 EVSWNTMITGYAQNNYLAEAQRLFEEAP----VKDVFTWTAMVSGYVQNGK-------VDEARMIFDAMPE--K-NTVSW 312 (778)
Q Consensus 247 ~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~--~-~~~t~ 312 (778)
+. +.+..|+.+++.+. ..+...|...+.--..++. .+.+..+|+++.. | +...|
T Consensus 149 ----------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW 216 (493)
T 2uy1_A 149 ----------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVY 216 (493)
T ss_dssp ----------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ----------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 10 11222232222211 0123345554443222211 2234556666554 2 55566
Q ss_pred HHHHHHHhccCChHHHHHHHHhhc--cccccHHHHHHHHHHhcCChhHH-HHHhhhCC--C----------CCeeehhhH
Q 004024 313 NAMIAGYVQTKRMDMARELFEAMT--CKNVASWNTMITGYAQSGEITHA-RNLFDRMP--Q----------HDCISWAAI 377 (778)
Q Consensus 313 ~~ll~~~~~~~~~~~a~~i~~~~~--~~~~~~~~~Li~~y~k~g~~~~A-~~~f~~m~--~----------~d~~~~~~l 377 (778)
...+.-+...|+.+.|..+++.++ +.+...+. .|+...+.++. ..+.+... + .....|...
T Consensus 217 ~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 217 FFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 666666667777777777777766 22222222 23222111111 11111110 0 011345555
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHH-H--hcccc-cHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 004024 378 IAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLS-T--CANLA-SLELGKQLHGQLVKVGFEAGCFVGNALLVMYCK 453 (778)
Q Consensus 378 i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~-a--~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 453 (778)
+.-+.+.+..+.|..+|.+. +. |. .++...+. | -...+ +.+.|+.+++..++.. +.++..+...++...+
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~---~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GN---EG-VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TT---SC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHh-hC---CC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 66565667788888888877 21 22 12221111 1 11122 5788888888877753 3345556667788888
Q ss_pred cCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 454 CGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 454 ~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
.|+.+.|+.+|+.+. +....|...+.--..+|+.+.+.++++++..
T Consensus 367 ~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 367 IGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888874 3566788777777777888888787777664
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.34 E-value=5.3e-07 Score=92.33 Aligned_cols=190 Identities=6% Similarity=-0.057 Sum_probs=132.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHH
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILS 515 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~ 515 (778)
+...+..+...|.+.|++++|...|++... .+...|..+...|...|++++|++.+++..+ +.|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 345566777888899999999999988754 3677888889999999999999999998887 5665 456777888
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIPNS-KHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELA 594 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a 594 (778)
++...|++++|...|....+. .|+. ..+...+....+.++..+... .......++..+...+ +.+. .|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 889999999999999887643 2211 011112222222211111111 2223334444444444 3333 6899999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHhhhc-CCcchHHHHHHHHHh
Q 004024 595 EKAAEVIFEMEPENAGMYVLLSNLYAAS-GRWGDVSKVRLKMRD 637 (778)
Q Consensus 595 ~~~~~~~~~l~p~~~~~y~~L~~~y~~~-g~~~~a~~~~~~m~~ 637 (778)
.+.++++++++|++......+..++... +++++|.+++....+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999887778888888877 779999999987765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=3e-06 Score=74.65 Aligned_cols=119 Identities=11% Similarity=-0.002 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445667778888899999999888776 3344 47789999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHH
Q 004024 621 ASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFK 681 (778)
Q Consensus 621 ~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~ 681 (778)
..|++++|.+.++...+.. |. ....|...++...+.++..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~----p~----------------~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD----AE----------------VNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH----HH----------------HHTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC----cc----------------cCCchhHHHHHHHHHHHHHh
Confidence 9999999999988776532 11 01236666777766666554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.31 E-value=5.9e-06 Score=71.74 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFE-PDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
...+..+...+.+.|++++|...++++ ... .+..+|..+...+...|+.+.|...+++++++.|+++..+..++.++.
T Consensus 43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 344555666666666666666666655 122 356788888888899999999999999999999999888888888876
Q ss_pred hcC
Q 004024 621 ASG 623 (778)
Q Consensus 621 ~~g 623 (778)
..|
T Consensus 123 ~~g 125 (125)
T 1na0_A 123 KQG 125 (125)
T ss_dssp HHC
T ss_pred hcc
Confidence 654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.8e-06 Score=83.71 Aligned_cols=181 Identities=13% Similarity=0.022 Sum_probs=138.5
Q ss_pred hcCCHHHHHHHHHhccC--C-ChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCChhH-------------
Q 004024 453 KCGSVEEAYHAFEEIVD--K-DVISWNTM-------IAGYARHGFGKDALMLFESMKTVGIKPDDIT------------- 509 (778)
Q Consensus 453 k~g~~~~A~~~f~~m~~--~-d~~~~~~l-------i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t------------- 509 (778)
..++.+.|.+.|.+... | ....|+.+ ...+...++..+++..+.+-.+ +.|+...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999999865 3 56689888 4666666666677666665444 5554321
Q ss_pred ---------HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 004024 510 ---------MVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDA----A 576 (778)
Q Consensus 510 ---------~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~----~ 576 (778)
......++...|++++|.+.|..+.. ..|+....-.+..++.+.|++++|+..++.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 23355678889999999999998864 3464435556667899999999999999877434433 3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC-CCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 577 TWGALLGACRLYGKTELAEKAAEVIFEME--PE-NAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 577 ~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~--p~-~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
++..|..++...|+.++|+..++++.+-. |. .+.....++.++.+.|+.++|..+++.+...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 78888999999999999999999998543 54 4457789999999999999999999998873
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.7e-05 Score=78.13 Aligned_cols=159 Identities=8% Similarity=0.071 Sum_probs=124.9
Q ss_pred CCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCc------
Q 004024 455 GSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGK--DALMLFESMKTVGIKP-DDITMVGILSACSHTGL------ 522 (778)
Q Consensus 455 g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~--~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~------ 522 (778)
++++++..+++++.+ +|..+|+--...+.+.|.++ ++++.++++.+ ..| |...|..-.....+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhh
Confidence 678899999988865 57788888888888889888 99999999998 445 55566666666667676
Q ss_pred HHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCChHHHH
Q 004024 523 VEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDE-AQNLMKNM-PF----EPDAATWGALLGACRLYGKTELAE 595 (778)
Q Consensus 523 ~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~e-A~~~~~~m-~~----~p~~~~~~~Ll~a~~~~g~~~~a~ 595 (778)
++++++++..+... .| |...|+.+..++.+.|+..+ +.++.++. .. ..++..|..|..++...|+.++|.
T Consensus 202 ~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 89999999888753 34 67778888888988888444 55677765 22 236778999999999999999999
Q ss_pred HHHHHHHh-cCCCCCchHHHHHHH
Q 004024 596 KAAEVIFE-MEPENAGMYVLLSNL 618 (778)
Q Consensus 596 ~~~~~~~~-l~p~~~~~y~~L~~~ 618 (778)
++++.+.+ .+|-....+...++.
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHhccChHHHHHHHHHHhh
Confidence 99999997 899987777665544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=7e-06 Score=71.98 Aligned_cols=84 Identities=13% Similarity=0.043 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
...+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+.+.|...+++++++.|+++..+..++.++.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 444555666666666666666666554 2234 46678888888999999999999999999999999999999999998
Q ss_pred hcCCcc
Q 004024 621 ASGRWG 626 (778)
Q Consensus 621 ~~g~~~ 626 (778)
..|+++
T Consensus 126 ~~~~~~ 131 (131)
T 2vyi_A 126 KLREAP 131 (131)
T ss_dssp HHTTCC
T ss_pred HHhcCC
Confidence 888764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.1e-06 Score=78.06 Aligned_cols=117 Identities=9% Similarity=0.070 Sum_probs=80.9
Q ss_pred cCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCh--HHH
Q 004024 520 TGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGA-CRLYGKT--ELA 594 (778)
Q Consensus 520 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a-~~~~g~~--~~a 594 (778)
.|++++|...+....+.. +.+...|..+...|...|++++|.+.+++. ...| +...|..+..+ +...|+. +.|
T Consensus 23 ~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 445555555555544321 124455666667777777777777776665 2233 45677777777 6678887 889
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 595 EKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 595 ~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
...++++++++|+++..+..++.+|...|++++|.+.++...+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999999988888888999999999999998888877664
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=7.5e-06 Score=72.22 Aligned_cols=117 Identities=9% Similarity=-0.013 Sum_probs=80.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV 550 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 550 (778)
+...|..+...+...|++++|++.|++..+ ..|+ +...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~-----------------------------------~~~~~~~la 57 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPK-----------------------------------DAKLYSNRA 57 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTT-----------------------------------CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCC-----------------------------------cHHHHHHHH
Confidence 344566666666666666666666666655 2332 233444555
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCC
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~ 624 (778)
.+|.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|++...+..++.+|...|+
T Consensus 58 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 58 ACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 5555566666666555544 2233 466788888888899999999999999999999998999999998887664
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.1e-05 Score=80.75 Aligned_cols=162 Identities=12% Similarity=0.021 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC--C-Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC---CC--hh
Q 004024 443 VGNALLVMYCKCGSVEEAYHAFEEIVD--K-DV------ISWNTMIAGYARHGFGKDALMLFESMKTVGIK---PD--DI 508 (778)
Q Consensus 443 ~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~------~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~---pd--~~ 508 (778)
.+...+..|...|++++|.+.+++..+ + +. ..+..+...|...|++++|++.|++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334567788899999999999886543 1 11 22344556677788999999999998763221 11 23
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-C------CCCC-H
Q 004024 509 TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN-----SKHYTCMVDLLGRAGRLDEAQNLMKNM-P------FEPD-A 575 (778)
Q Consensus 509 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lv~~l~r~g~~~eA~~~~~~m-~------~~p~-~ 575 (778)
++..+...+...|++++|..+|+...+.....|+ ...|..+...|.+.|++++|.+.+++. . ..+. .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888999999999999999988733222222 257888999999999999999998765 1 1111 5
Q ss_pred HHHHHHHHHHHHcCChHHH-HHHHHHHHhc
Q 004024 576 ATWGALLGACRLYGKTELA-EKAAEVIFEM 604 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a-~~~~~~~~~l 604 (778)
.+|..+...+...|+.+.| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788889999999999999 8878888764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.25 E-value=4e-05 Score=74.47 Aligned_cols=171 Identities=11% Similarity=-0.087 Sum_probs=131.4
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-CChhHHHHHHHHHHHcC----ChHHHHHHHHHHHH
Q 004024 426 KQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-KDVISWNTMIAGYARHG----FGKDALMLFESMKT 500 (778)
Q Consensus 426 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g----~~~~Al~l~~~m~~ 500 (778)
.+.+....+.| ++.....|..+|...|++++|.+.|++..+ .++.++..|...|.. | +.++|+++|++..+
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 34444444443 566777788889889999999999998765 467788888888887 6 89999999999987
Q ss_pred CCCCCChhHHHHHHHHHhc----cCcHHHHHHHHHHchhhcCCCCC---hHHHHHHHHHHhh----cCCHHHHHHHHHhC
Q 004024 501 VGIKPDDITMVGILSACSH----TGLVEKGTEYFYSMNRDYGVIPN---SKHYTCMVDLLGR----AGRLDEAQNLMKNM 569 (778)
Q Consensus 501 ~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~r----~g~~~eA~~~~~~m 569 (778)
.| +...+..+...+.. .++.++|.++|+...+. .|. +..+..|..+|.. .+++++|++.+++.
T Consensus 82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 65 55567777777776 78999999999988643 342 6778888888888 78999999999887
Q ss_pred -CCCCCHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhcCC
Q 004024 570 -PFEPDAATWGALLGACRLY-G-----KTELAEKAAEVIFEMEP 606 (778)
Q Consensus 570 -~~~p~~~~~~~Ll~a~~~~-g-----~~~~a~~~~~~~~~l~p 606 (778)
...+++..+..|...+... | |.++|...++++.+..+
T Consensus 156 ~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3334566777777776543 3 89999999999998754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.23 E-value=6e-06 Score=86.82 Aligned_cols=144 Identities=12% Similarity=0.012 Sum_probs=108.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV 550 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 550 (778)
+...|..+...|.+.|++++|+..|++..+ +.|+...+ ..+++.+.- . -....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~-~--------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQ-A--------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHH-H--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHH-H--------HHHHHHHHHH
Confidence 345677788888888999999999988887 44543210 001111100 0 0145677788
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
.+|.+.|++++|++.+++. .+.| +..+|..+..++...|+++.|...++++++++|+++.++..|+.+|...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999998888776 3445 4778999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHH
Q 004024 629 S-KVRLKMR 636 (778)
Q Consensus 629 ~-~~~~~m~ 636 (778)
. +.++.|-
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 4 4555553
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.23 E-value=8.8e-06 Score=75.04 Aligned_cols=94 Identities=11% Similarity=-0.004 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH--HH
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS--NL 618 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~--~~ 618 (778)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...+++++++.|+++..+..+. ..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 126 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555555666666666666666554 2233 4667888888888999999999999999999999887775444 44
Q ss_pred hhhcCCcchHHHHHHHHH
Q 004024 619 YAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 619 y~~~g~~~~a~~~~~~m~ 636 (778)
+...|++++|.+.+....
T Consensus 127 ~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 127 IVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccchH
Confidence 888899999998877654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.22 E-value=3e-06 Score=85.21 Aligned_cols=138 Identities=14% Similarity=-0.021 Sum_probs=102.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC--hHHHHHHHHHH
Q 004024 476 NTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN--SKHYTCMVDLL 553 (778)
Q Consensus 476 ~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l 553 (778)
-.....+...|++++|.++|+.+.. ..|+......+...+.+.|++++++..|....+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 3455667778888888888887766 3466554445555778888888888888755431 1 121 23567788889
Q ss_pred hhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 004024 554 GRAGRLDEAQNLMKNM---PFEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNL 618 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m---~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~ 618 (778)
.+.|++++|++.+++. +..|. ...+..+..+++..|+.++|...++++.+.+|+ +.+...|.+.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 9999999999999877 33254 347778888999999999999999999999998 7766666543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=2.1e-06 Score=82.62 Aligned_cols=171 Identities=6% Similarity=-0.082 Sum_probs=109.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCc
Q 004024 446 ALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGL 522 (778)
Q Consensus 446 ~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 522 (778)
..+......|.++.|.+.++.... .....|..+...+...|++++|++.|++..+ +.|+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------h
Confidence 344445556777777777765433 2455677888889999999999999999987 44432211100 0
Q ss_pred HHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 523 VEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEV 600 (778)
Q Consensus 523 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 600 (778)
.+.-. .. .....|..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|+++.|...+++
T Consensus 79 ~~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LLDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00000 00 01355677778888889999988888776 3344 467888999999999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHhhhcCCcchHH-HHHHHHHh
Q 004024 601 IFEMEPENAGMYVLLSNLYAASGRWGDVS-KVRLKMRD 637 (778)
Q Consensus 601 ~~~l~p~~~~~y~~L~~~y~~~g~~~~a~-~~~~~m~~ 637 (778)
+++++|+++..+..++.++...|+.+++. ..++.|-.
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999888888776 44554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.20 E-value=4.9e-06 Score=92.01 Aligned_cols=114 Identities=10% Similarity=0.013 Sum_probs=83.3
Q ss_pred hccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHH
Q 004024 518 SHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELA 594 (778)
Q Consensus 518 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a 594 (778)
...|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.+++. ...|+ ..+|..+..++...|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445555555555554432 23 3556677777777777888887777665 34554 67899999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHH--hhhcCCcchHHHHHHH
Q 004024 595 EKAAEVIFEMEPENAGMYVLLSNL--YAASGRWGDVSKVRLK 634 (778)
Q Consensus 595 ~~~~~~~~~l~p~~~~~y~~L~~~--y~~~g~~~~a~~~~~~ 634 (778)
+..++++++++|+++..+..++.+ +...|++++|.+.++.
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999988 8899999999998763
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-05 Score=71.42 Aligned_cols=97 Identities=9% Similarity=-0.010 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
+...|..+...+...|++++|...+++. ...| +..+|..+...+...|+++.|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 5677778888888888888888888765 3344 4778889999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 004024 620 AASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 620 ~~~g~~~~a~~~~~~m~~~ 638 (778)
...|++++|.+.++...+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999998877653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00013 Score=74.80 Aligned_cols=158 Identities=13% Similarity=0.027 Sum_probs=120.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC---Ch-----h-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCh----hHHHH
Q 004024 447 LLVMYCKCGSVEEAYHAFEEIVDK---DV-----I-SWNTMIAGYARHGFGKDALMLFESMKTVGIK-PDD----ITMVG 512 (778)
Q Consensus 447 Li~~y~k~g~~~~A~~~f~~m~~~---d~-----~-~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-pd~----~t~~~ 512 (778)
.+..+.+.|++++|...+++..+. +. . .+..+...|...|++++|++.|++....... +|. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788999999999999987552 11 1 2334666667778999999999999984333 232 25888
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhc----CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 004024 513 ILSACSHTGLVEKGTEYFYSMNRDY----GVIPN-SKHYTCMVDLLGRAGRLDEAQNLMKNM-------PFEPD-AATWG 579 (778)
Q Consensus 513 ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~ 579 (778)
+...+...|++++|..+|+.+.+.. +..|. ...|..+...|.+.|++++|.+.+++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999887422 22222 347888999999999999999988765 12223 56888
Q ss_pred HHHHHHHHcCC-hHHHHHHHHHHHhc
Q 004024 580 ALLGACRLYGK-TELAEKAAEVIFEM 604 (778)
Q Consensus 580 ~Ll~a~~~~g~-~~~a~~~~~~~~~l 604 (778)
.+..++...|+ .+.|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999995 59999999998875
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.1e-06 Score=76.55 Aligned_cols=96 Identities=14% Similarity=0.098 Sum_probs=71.6
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
+...+..+...+.+.|++++|++.+++. ...| +...|..+..++...|+++.|+..++++++++|+++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455666677777777777777777665 3344 4667777777788888888888888888888888888888888888
Q ss_pred hhcCCcchHHHHHHHHHh
Q 004024 620 AASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 620 ~~~g~~~~a~~~~~~m~~ 637 (778)
...|++++|.+.++...+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 888888888887776654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.6e-05 Score=68.15 Aligned_cols=95 Identities=11% Similarity=0.094 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
...+..+...+...|++++|.+.+++. ...| +...|..+...+...|+++.|...+++++++.|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344555666666667777776666655 2233 45566666666777777777777777777777777777777777777
Q ss_pred hcCCcchHHHHHHHHHh
Q 004024 621 ASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 621 ~~g~~~~a~~~~~~m~~ 637 (778)
..|++++|.+.++...+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 77777777777666554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.16 E-value=6e-06 Score=75.49 Aligned_cols=101 Identities=7% Similarity=-0.014 Sum_probs=65.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV 550 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 550 (778)
+...|..+...+.+.|++++|+..|++... +.|+. ...|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~-----------------------------------~~~~~~lg 77 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYN-----------------------------------VDYIMGLA 77 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC-----------------------------------HHHHHHHH
Confidence 344566667777777777777777777776 45532 33344445
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
.+|.+.|++++|.+.+++. .+.|+ +..|..+..++...|+++.|...+++++++.|++
T Consensus 78 ~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 78 AIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 5555555555555555444 23443 5577777777788888888888888888888765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=4e-06 Score=73.51 Aligned_cols=94 Identities=14% Similarity=-0.016 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~ 622 (778)
.+..+...+.+.|++++|...+++. ...| +...|..+..++...|+.+.|+..++++++++|+++..+..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3555677888899999999998877 3455 5778999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhC
Q 004024 623 GRWGDVSKVRLKMRDR 638 (778)
Q Consensus 623 g~~~~a~~~~~~m~~~ 638 (778)
|++++|.+.++...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999998877653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-05 Score=74.44 Aligned_cols=84 Identities=10% Similarity=0.069 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCE
Q 004024 575 AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNK 654 (778)
Q Consensus 575 ~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~ 654 (778)
..+|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|.+.++...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------------- 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---------------- 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc----------------
Confidence 4578888899999999999999999999999999999999999999999999999998877652
Q ss_pred EEEEEeCCCCCcchH-HHHHHHHHHHHHHHh
Q 004024 655 VHTFSVGDTLHPEKD-RIYAYLEELEFKLKQ 684 (778)
Q Consensus 655 ~~~f~~~d~~hp~~~-~i~~~l~~l~~~~~~ 684 (778)
.|... .+...|..+..++++
T Consensus 127 ----------~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 127 ----------HPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp ----------CGGGHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHH
Confidence 34444 667777777776654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.1e-05 Score=75.37 Aligned_cols=116 Identities=12% Similarity=0.011 Sum_probs=54.9
Q ss_pred hcCCHHHHHH---HHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hhHHHHHHHHHhccCcHH
Q 004024 453 KCGSVEEAYH---AFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTV----GIKPD-DITMVGILSACSHTGLVE 524 (778)
Q Consensus 453 k~g~~~~A~~---~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~ 524 (778)
..|++++|.+ .+..-+.....+|+.+...|...|++++|+..|++..+. |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666 443322234456666666677777777777777665541 11111 123444444555555555
Q ss_pred HHHHHHHHchhhcCCCC-----ChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 004024 525 KGTEYFYSMNRDYGVIP-----NSKHYTCMVDLLGRAGRLDEAQNLMKN 568 (778)
Q Consensus 525 ~a~~~~~~m~~~~~~~p-----~~~~y~~lv~~l~r~g~~~eA~~~~~~ 568 (778)
+|.+++........-.| ....+..+..++...|++++|.+.+++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 55555554433211111 122334444444455555555444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=8.9e-05 Score=77.00 Aligned_cols=192 Identities=15% Similarity=0.111 Sum_probs=125.0
Q ss_pred hhHHHHHHHHHHhcC-CHHHHHHHHHhccC---CChhHHHHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCC-ChhHHHHH
Q 004024 441 CFVGNALLVMYCKCG-SVEEAYHAFEEIVD---KDVISWNTMIAGYARH-G-FGKDALMLFESMKTVGIKP-DDITMVGI 513 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g-~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~-g-~~~~Al~l~~~m~~~g~~p-d~~t~~~l 513 (778)
..+++.--..+...| .++++++.++.+.. ++..+|+--...+... + ++++++++++++.+ ..| |...|..-
T Consensus 88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R 165 (349)
T 3q7a_A 88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYL 165 (349)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 334444444455556 48888888887754 4566777766666665 6 77888888888876 445 44555555
Q ss_pred HHHHhccCcHH--------HHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCC-------HHHHHHHHHhC-CCCC-CH
Q 004024 514 LSACSHTGLVE--------KGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGR-------LDEAQNLMKNM-PFEP-DA 575 (778)
Q Consensus 514 l~a~~~~g~~~--------~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~-------~~eA~~~~~~m-~~~p-~~ 575 (778)
.....+.|..+ +++++++.+.+. .| |...|+.-..++.+.|+ ++++++.++++ ...| |.
T Consensus 166 ~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~ 242 (349)
T 3q7a_A 166 HWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNV 242 (349)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence 55555555555 788888877754 23 55566667777777765 78888888766 3455 57
Q ss_pred HHHHHHHHHHHHcCChHH-----------------HHHHHHHHHhc---C------CCCCchHHHHHHHhhhcCCcchHH
Q 004024 576 ATWGALLGACRLYGKTEL-----------------AEKAAEVIFEM---E------PENAGMYVLLSNLYAASGRWGDVS 629 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~-----------------a~~~~~~~~~l---~------p~~~~~y~~L~~~y~~~g~~~~a~ 629 (778)
..|+-+-+.+...|.... -..+.+.+.++ . +.++-+...|+.+|...|+.++|.
T Consensus 243 SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~ 322 (349)
T 3q7a_A 243 SAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA 322 (349)
T ss_dssp HHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH
Confidence 889888877777665410 11222233332 1 345556789999999999999999
Q ss_pred HHHHHHHh
Q 004024 630 KVRLKMRD 637 (778)
Q Consensus 630 ~~~~~m~~ 637 (778)
++++.+.+
T Consensus 323 ~~~~~l~~ 330 (349)
T 3q7a_A 323 KVFEKLSS 330 (349)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999864
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.2e-05 Score=69.07 Aligned_cols=97 Identities=16% Similarity=0.069 Sum_probs=87.1
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 004024 541 PNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNL 618 (778)
Q Consensus 541 p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~ 618 (778)
.+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|...+++++++.|+++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35677888889999999999999999876 4555 577899999999999999999999999999999999999999999
Q ss_pred hhhcCCcchHHHHHHHHHh
Q 004024 619 YAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 619 y~~~g~~~~a~~~~~~m~~ 637 (778)
|...|++++|.+.++...+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999987765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=4.8e-06 Score=75.95 Aligned_cols=100 Identities=12% Similarity=0.001 Sum_probs=64.1
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 004024 513 ILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYG 589 (778)
Q Consensus 513 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g 589 (778)
+...+...|++++|...|...... .| +...|..+..+|.+.|++++|++.+++. ...| ++..|..+..++...|
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 333444444444444444444321 22 3445555666666667777776666655 2344 4667888888889999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 590 KTELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 590 ~~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
+.+.|...+++++++.|+++......
T Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 104 ELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp CHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred CHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 99999999999999999887654433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.2e-05 Score=68.42 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPE--NAGMYVLLSNL 618 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~--~~~~y~~L~~~ 618 (778)
...+..+...+.+.|++++|...+++. ...| +..+|..+...+...|+++.|...+++++++.|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 444556677777778888887777665 2233 4667888888888899999999999999999999 88889999999
Q ss_pred hhhc-CCcchHHHHHHHHHhCC
Q 004024 619 YAAS-GRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 619 y~~~-g~~~~a~~~~~~m~~~g 639 (778)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999888776543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.9e-05 Score=67.26 Aligned_cols=96 Identities=21% Similarity=0.307 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|+++.|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456777888889999999999988876 2234 57789999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhC
Q 004024 621 ASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 621 ~~g~~~~a~~~~~~m~~~ 638 (778)
..|++++|.+.++.+.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999887763
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.10 E-value=6e-05 Score=72.03 Aligned_cols=129 Identities=14% Similarity=0.039 Sum_probs=88.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCC-C--
Q 004024 440 GCFVGNALLVMYCKCGSVEEAYHAFEEIVD---------KDVISWNTMIAGYARHGFGKDALMLFESMKTVG-IKP-D-- 506 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---------~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~p-d-- 506 (778)
...++..+...|...|++++|...|++..+ ....+|+.+...|...|++++|++.+++..+.- -.| +
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 456677788888888999998888887644 134567888888999999999999998876520 022 2
Q ss_pred --hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 004024 507 --DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN----SKHYTCMVDLLGRAGRLDEAQNLMKN 568 (778)
Q Consensus 507 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~ 568 (778)
...+..+...+...|++++|..+++.......-.++ ...+..+..++.+.|++++|.+.+++
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 234667777888899999999998876542111111 22345566666677777777666654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.3e-05 Score=69.53 Aligned_cols=95 Identities=12% Similarity=-0.003 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
...+..+...+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+++.|...+++++++.|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 444555555555555555555555544 33444 3455555555556666666666666666666666556666666
Q ss_pred HhhhcCCcchHHHHHHHHHh
Q 004024 618 LYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 618 ~y~~~g~~~~a~~~~~~m~~ 637 (778)
+|...|++++|.+.++...+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.06 E-value=9.6e-06 Score=89.65 Aligned_cols=115 Identities=10% Similarity=-0.009 Sum_probs=63.3
Q ss_pred HHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHH
Q 004024 449 VMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVE 524 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~ 524 (778)
..|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.|++..+ +.|+ ..++..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 345566777777777776543 3456677777777777777777777777766 4453 335555556666666666
Q ss_pred HHHHHHHHchhhcCCCCChHHHHHHHHH--HhhcCCHHHHHHHHH
Q 004024 525 KGTEYFYSMNRDYGVIPNSKHYTCMVDL--LGRAGRLDEAQNLMK 567 (778)
Q Consensus 525 ~a~~~~~~m~~~~~~~p~~~~y~~lv~~--l~r~g~~~eA~~~~~ 567 (778)
+|.+.|+...+...-. ...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHD--KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTC--TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666655432111 2222223322 455555555555554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.05 E-value=3.3e-06 Score=76.74 Aligned_cols=92 Identities=14% Similarity=0.038 Sum_probs=69.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------
Q 004024 546 YTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-------------AATWGALLGACRLYGKTELAEKAAEVIFEM------- 604 (778)
Q Consensus 546 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-------------~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l------- 604 (778)
+......+...|++++|++.+++. .+.|+ ...|..+..++...|++++|...+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 334445556666666666666654 12222 238888888888899999999999999988
Q ss_pred CCCCCchH----HHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 605 EPENAGMY----VLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 605 ~p~~~~~y----~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+|+++..| ..++.++...|++++|.+.++...+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99998888 8999999999999999998887654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=3.2e-05 Score=67.61 Aligned_cols=97 Identities=10% Similarity=0.083 Sum_probs=85.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
+...+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++++++.|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4566777888888999999999998876 3344 5778999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 004024 620 AASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 620 ~~~g~~~~a~~~~~~m~~~ 638 (778)
...|++++|.+.++...+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999887653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.1e-05 Score=73.76 Aligned_cols=128 Identities=7% Similarity=0.060 Sum_probs=81.5
Q ss_pred HcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH-HhhcCCH--
Q 004024 484 RHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL-LGRAGRL-- 559 (778)
Q Consensus 484 ~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~-l~r~g~~-- 559 (778)
..|++++|++.|++..+ ..| +...+..+...+...|++++|..+|+...+... .+...+..+..+ +.+.|++
T Consensus 22 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCcch
Confidence 34555566666665555 233 334555555556666666666666666554311 134556666666 6677777
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 560 DEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 560 ~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
++|.+.+++. ...| +..+|..+...+...|+++.|...+++++++.|+++.....+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 7887777765 3344 367888888889999999999999999999999986655443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.02 E-value=6.9e-05 Score=68.85 Aligned_cols=124 Identities=13% Similarity=-0.048 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHh
Q 004024 476 NTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLG 554 (778)
Q Consensus 476 ~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~ 554 (778)
..+...+...|++++|+..|++..+ ..| +...+..+...+...|++++|.+.|....+.. ..+...|..+..++.
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHH
Confidence 3333344444444444444444433 222 22233333334444444444444444433321 112334444555555
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHHcCChHHHHHHHHHHHh
Q 004024 555 RAGRLDEAQNLMKNM-PFEP-DAATWG--ALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 555 r~g~~~eA~~~~~~m-~~~p-~~~~~~--~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
+.|++++|.+.+++. ...| +...|. .+...+...|+++.|...+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 555555555555443 1222 222332 222224455666666666665544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.4e-05 Score=70.58 Aligned_cols=94 Identities=7% Similarity=-0.031 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-------hHHH
Q 004024 544 KHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG-------MYVL 614 (778)
Q Consensus 544 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~-------~y~~ 614 (778)
..+.-+...+.+.|++++|++.+++. .+.|+ ..+|..+..++...|+++.|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44667888888999999999998876 44554 778999999999999999999999999999998764 5677
Q ss_pred HHHHhhhcCCcchHHHHHHHHHh
Q 004024 615 LSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 615 L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++++|...|++++|.+.++...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88999999999999999876544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=7.4e-05 Score=67.12 Aligned_cols=117 Identities=13% Similarity=0.018 Sum_probs=79.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV 550 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 550 (778)
+...|..+...+...|++++|++.|++..+ ..|+... ....|..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~--------------------------------~~~~~~~~a 72 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD--------------------------------QAVLHRNRA 72 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHH--------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchH--------------------------------HHHHHHHHH
Confidence 455666666667777777777777776665 4454200 033444555
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhh
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAA 621 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~ 621 (778)
..|.+.|++++|.+.+++. ...| +...|..+..++...|+.+.|...++++++++|++...+..+..+...
T Consensus 73 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 73 ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 5666666666666666554 2234 466788888888899999999999999999999998777777766544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.1e-05 Score=69.08 Aligned_cols=89 Identities=16% Similarity=0.120 Sum_probs=66.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHHHHHhh
Q 004024 549 MVDLLGRAGRLDEAQNLMKNM-PFEPD-A---ATWGALLGACRLYGKTELAEKAAEVIFEMEPEN---AGMYVLLSNLYA 620 (778)
Q Consensus 549 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~---~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~---~~~y~~L~~~y~ 620 (778)
+...+.+.|++++|.+.+++. ...|+ . .+|..+..++...|+++.|...++++++..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 455666777777777777665 22233 2 467777777888888888888888888888888 666888888888
Q ss_pred hcCCcchHHHHHHHHHh
Q 004024 621 ASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 621 ~~g~~~~a~~~~~~m~~ 637 (778)
..|++++|.+.++...+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888877765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=6.1e-05 Score=64.43 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++..+..++.+.
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 344555555566666666666666554 2233 4667888888888889999999999999999998877777766553
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00052 Score=70.83 Aligned_cols=190 Identities=11% Similarity=0.047 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhccC---CChhHHHHHHHHHHHcCC-hHHHHHHH
Q 004024 422 LELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCG--SVEEAYHAFEEIVD---KDVISWNTMIAGYARHGF-GKDALMLF 495 (778)
Q Consensus 422 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g--~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~-~~~Al~l~ 495 (778)
++.+..+...+++.. +.+..+|+.-.-.+.+.| .++++..+++++.+ +|..+|+--.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455555555555543 456666666666666666 37888888887754 566777777777777777 47888888
Q ss_pred HHHHHCCCCC-ChhHHHHHHHHHhcc--------------CcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhc---
Q 004024 496 ESMKTVGIKP-DDITMVGILSACSHT--------------GLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRA--- 556 (778)
Q Consensus 496 ~~m~~~g~~p-d~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~--- 556 (778)
+++++ ..| |...|........+. +.++++++++...... .| |...|+.+-.++.+.
T Consensus 169 ~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCc
Confidence 88887 445 344454444444333 4567777777776642 34 455555555555544
Q ss_pred --------CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 004024 557 --------GRLDEAQNLMKNM-PFEPDAATWGALLGAC-----RLYGKTELAEKAAEVIFEMEPENAGMYVLLSNL 618 (778)
Q Consensus 557 --------g~~~eA~~~~~~m-~~~p~~~~~~~Ll~a~-----~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~ 618 (778)
+.++++++.++++ ...||. .|.-+-.+. ...|..+.....+.++.+++|...+.|..|.+-
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 4567777777766 455654 454322222 124556677777778888888776666665443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.93 E-value=4.4e-05 Score=77.89 Aligned_cols=183 Identities=8% Similarity=-0.022 Sum_probs=102.5
Q ss_pred chHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCCC---CeeehhhHHHHHHh
Q 004024 310 VSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQH---DCISWAAIIAGYAQ 383 (778)
Q Consensus 310 ~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~ 383 (778)
..+..+...+...|++++|...+..++ +.+...+..+...|.+.|++++|...|++..+. +...|..+...|.+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 345555666666777777777777666 445667777788888888888888888876552 34567778888888
Q ss_pred cCChhHHHHHHHHHhhcCcccCc-ccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004024 384 SGYSEDSLRLFIEMKRYGERLNR-SPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYH 462 (778)
Q Consensus 384 ~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 462 (778)
.|++++|+..|++....+ |+. ..+...+....... ... -+........+.+..+...+...+ .|+.++|.+
T Consensus 85 ~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~ 156 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIA---KKK-RWNSIEERRIHQESELHSYLTRLI--AAERERELE 156 (281)
T ss_dssp TTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHH---HHH-HHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHH---HHH-HHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHH
Confidence 888999998888877643 332 23333332221111 111 112222333444555544443332 466666666
Q ss_pred HHHhccCCC---hhHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q 004024 463 AFEEIVDKD---VISWNTMIAGYARH-GFGKDALMLFESMKT 500 (778)
Q Consensus 463 ~f~~m~~~d---~~~~~~li~~~~~~-g~~~~Al~l~~~m~~ 500 (778)
.++...+.+ ......+-..+.+. +..++|.++|.+..+
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 666554422 12222222233333 445556666655443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.93 E-value=5.3e-05 Score=66.25 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------CchHH
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN-------AGMYV 613 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~-------~~~y~ 613 (778)
...|..+...+.+.|++++|...+++. ...| +..+|..+...+...|+++.|...+++++++.|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677788888889999999888776 2233 57788888899999999999999999999998876 77889
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHh
Q 004024 614 LLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 614 ~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.++.+|...|++++|.+.++...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999988776
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.90 E-value=6.1e-05 Score=69.63 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=56.9
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
+...|..+..+|.+.|++++|++.+++. .+.|+ ...|..+..++...|+++.|...++++++++|+++..+...+
T Consensus 44 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 44 NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3445556666666677777777666655 23454 778889999999999999999999999999999988665554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.89 E-value=5.5e-05 Score=66.31 Aligned_cols=109 Identities=11% Similarity=0.028 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHH
Q 004024 474 SWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLL 553 (778)
Q Consensus 474 ~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 553 (778)
.|..+...+...|++++|++.|++..+ ..|+ +...|..+..+|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~-----------------------------------~~~~~~~~a~~~ 48 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIK--RAPE-----------------------------------DARGYSNRAAAL 48 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT-----------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCC-----------------------------------ChHHHHHHHHHH
Confidence 455555556666666666666666555 3332 234455555566
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCCchHHHHHHHh
Q 004024 554 GRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEME------PENAGMYVLLSNLY 619 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~------p~~~~~y~~L~~~y 619 (778)
.+.|++++|++.+++. ...|+ ...|..+..++...|+++.|...++++++++ |++......+..+.
T Consensus 49 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 49 AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 6666666666665554 23443 6678888888888888888999999988888 77766666665554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.89 E-value=5.8e-05 Score=67.96 Aligned_cols=100 Identities=8% Similarity=-0.040 Sum_probs=63.9
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTE 592 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~ 592 (778)
.+...|++++|...|...... .| +...|..+..+|.+.|++++|.+.+++. ...| ++..|..+..++...|+++
T Consensus 27 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 334444444444444444321 22 3444555666666667777776666655 2334 3567788888888999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH
Q 004024 593 LAEKAAEVIFEMEPENAGMYVLLSNL 618 (778)
Q Consensus 593 ~a~~~~~~~~~l~p~~~~~y~~L~~~ 618 (778)
.|...+++++++.|+++........+
T Consensus 104 ~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 104 GAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999887766554433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.85 E-value=5.6e-05 Score=79.32 Aligned_cols=96 Identities=11% Similarity=-0.045 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----------------AATWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----------------~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
...|..+...|.+.|++++|.+.+++. .+.|+ ..+|..+..++...|+++.|...++++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455667777777888888888777665 22333 4789999999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 606 PENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 606 p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
|+++.+|..++.+|...|++++|.+.++...+.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887763
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00011 Score=79.76 Aligned_cols=187 Identities=7% Similarity=-0.078 Sum_probs=129.9
Q ss_pred HHHhcCCHHHHHHHHHhccCC-----C---------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChh
Q 004024 450 MYCKCGSVEEAYHAFEEIVDK-----D---------------VISWNTMIAGYARHGFGKDALMLFESMKTVG-IKPDDI 508 (778)
Q Consensus 450 ~y~k~g~~~~A~~~f~~m~~~-----d---------------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~pd~~ 508 (778)
.+.+.|++++|.+.|..+.+. + ..++..|...|...|++++|++++.++...- ..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 355678888888888776431 1 0136778888999999999999988776521 112221
Q ss_pred ----HHHHHHHHHhccCcHHHHHHHHHHchhh---cCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-----C--CCC
Q 004024 509 ----TMVGILSACSHTGLVEKGTEYFYSMNRD---YGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-----P--FEP 573 (778)
Q Consensus 509 ----t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-----~--~~p 573 (778)
....+-..+...|..+++.+++...... .+..+ ....+..+..+|...|++++|.+++++. . -+|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 1222223344568889988888776432 12222 3567788999999999999999988765 1 123
Q ss_pred C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---C----CchHHHHHHHhhhcCCcchHHHHHHHHH
Q 004024 574 D-AATWGALLGACRLYGKTELAEKAAEVIFEMEPE---N----AGMYVLLSNLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 574 ~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~---~----~~~y~~L~~~y~~~g~~~~a~~~~~~m~ 636 (778)
. ..+|..++..|...||+++|...+++++...|. + ...+..++.+|...|++++|.+.+...-
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2 447888889999999999999999998876432 2 2356778888999999999988765553
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00015 Score=69.39 Aligned_cols=95 Identities=11% Similarity=-0.033 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM----PFEPD--------------AATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~--------------~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
...+..+...+.+.|++++|.+.+++. |-.|+ ..+|..+..++...|+++.|...+++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344566677777888888888887765 22221 268888899999999999999999999999
Q ss_pred CCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 605 EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 605 ~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+|+++.++..++.+|...|++++|.+.++...+
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999987765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.79 E-value=8.4e-05 Score=81.64 Aligned_cols=144 Identities=10% Similarity=0.015 Sum_probs=105.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHH
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMV 550 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 550 (778)
....|..+...|.+.|++++|+..|++..+ +.|+...+ . -++..+ ... -....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKA-SES--------FLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHH-HHH--------HHHHHHHHHH
Confidence 345788888889999999999999998887 44443211 0 011100 000 0245677788
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
.+|.+.|++++|++.+++. .+.| +...|..+..++...|+++.|...++++++++|++..++..|+.++...|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999888876 3445 4778999999999999999999999999999999999999999999999999988
Q ss_pred HHH-HHHHH
Q 004024 629 SKV-RLKMR 636 (778)
Q Consensus 629 ~~~-~~~m~ 636 (778)
.+- ++.|-
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 753 44443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.002 Score=66.77 Aligned_cols=172 Identities=13% Similarity=0.053 Sum_probs=108.5
Q ss_pred chhHHHHHHHHHHhc-C-CHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCC-
Q 004024 440 GCFVGNALLVMYCKC-G-SVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGK--------DALMLFESMKTVGIKP- 505 (778)
Q Consensus 440 ~~~~~~~Li~~y~k~-g-~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~--------~Al~l~~~m~~~g~~p- 505 (778)
+..+++.-...+.+. + +.+++.+.++++.+ +|..+|+--...+.+.|..+ ++++.++++++ ..|
T Consensus 122 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~ 199 (349)
T 3q7a_A 122 SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGR 199 (349)
T ss_dssp CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTT
T ss_pred cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCC
Confidence 344444444444444 4 66777777777765 45566766555555555555 88888888887 345
Q ss_pred ChhHHHHHHHHHhccCc-------HHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCH------------------
Q 004024 506 DDITMVGILSACSHTGL-------VEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRL------------------ 559 (778)
Q Consensus 506 d~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~------------------ 559 (778)
|...|........+.+. ++++++++..+... .| |...|+.+-.++.+.|+-
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 276 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNP 276 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccc
Confidence 55566666666666664 67888888777643 34 555666666666666653
Q ss_pred --HHHHHHHHhCC-C-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCCCchHHHHH
Q 004024 560 --DEAQNLMKNMP-F-------EPDAATWGALLGACRLYGKTELAEKAAEVIF-EMEPENAGMYVLLS 616 (778)
Q Consensus 560 --~eA~~~~~~m~-~-------~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~-~l~p~~~~~y~~L~ 616 (778)
.+..++..++. . .+.+..+..|...|...|+.++|.++++.+. +.+|-....+.-.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 277 DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 44455554441 1 2567788889999999999999999999987 67887655544433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00078 Score=75.75 Aligned_cols=168 Identities=11% Similarity=-0.009 Sum_probs=137.5
Q ss_pred CCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhcc
Q 004024 455 GSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGF----------GKDALMLFESMKTVGIKPD-DITMVGILSACSHT 520 (778)
Q Consensus 455 g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~----------~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~ 520 (778)
..-++|.+.++++.. .+..+|+.--..+...|+ ++++++.++++.+ ..|+ ...|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 345678899988865 356678887777777777 8999999999998 5664 55788878888889
Q ss_pred C--cHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc------
Q 004024 521 G--LVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAG-RLDEAQNLMKNM-PFEP-DAATWGALLGACRLY------ 588 (778)
Q Consensus 521 g--~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g-~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~------ 588 (778)
| ++++++++++.+.+. .| +...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9 779999999999864 34 5666777778888889 899999999888 5556 578999888887763
Q ss_pred --------CChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcch
Q 004024 589 --------GKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGD 627 (778)
Q Consensus 589 --------g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~ 627 (778)
+.++++.+.++++++++|++..+|..+.+++...|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999999666
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.3e-05 Score=69.53 Aligned_cols=82 Identities=18% Similarity=0.160 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHH
Q 004024 556 AGRLDEAQNLMKNM-PF---EPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSK 630 (778)
Q Consensus 556 ~g~~~eA~~~~~~m-~~---~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~ 630 (778)
.|++++|++.+++. .. .|+ ..+|..|...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666554 23 233 44666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 004024 631 VRLKMRD 637 (778)
Q Consensus 631 ~~~~m~~ 637 (778)
.++...+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00019 Score=63.10 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 445 NALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 445 ~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
.-|.+.|.+.|++++|+..|++..+ .+...|+.+..+|...|++++|++.|++.++
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455556666666666666665532 2455566666666666666666666666554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00016 Score=61.09 Aligned_cols=97 Identities=18% Similarity=0.035 Sum_probs=61.5
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHH
Q 004024 511 VGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP---DAATWGALLGACR 586 (778)
Q Consensus 511 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p---~~~~~~~Ll~a~~ 586 (778)
..+...+...|++++|..+|+...+.. ..+...|..+..++.+.|++++|.+.+++. ...| +..+|..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 333444444445555555444443321 113445566666777777777777776655 2333 4667888888888
Q ss_pred Hc-CChHHHHHHHHHHHhcCCCCC
Q 004024 587 LY-GKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 587 ~~-g~~~~a~~~~~~~~~l~p~~~ 609 (778)
.. |+.+.|...++++++..|.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHhCCHHHHHHHHHHHhhcccCCC
Confidence 88 888888888888888888764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.74 E-value=8.8e-05 Score=65.84 Aligned_cols=96 Identities=6% Similarity=-0.133 Sum_probs=56.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 004024 510 MVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRL 587 (778)
Q Consensus 510 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~ 587 (778)
+..+...+...|++++|..+|....... +.+...|..+..++.+.|++++|...+++. ...| +...|..+..++..
T Consensus 12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 89 (137)
T 3q49_B 12 LKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 89 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 3333334444444444444444333221 112444555666666666666666666554 2234 46678888888888
Q ss_pred cCChHHHHHHHHHHHhcCCC
Q 004024 588 YGKTELAEKAAEVIFEMEPE 607 (778)
Q Consensus 588 ~g~~~~a~~~~~~~~~l~p~ 607 (778)
.|+++.|...+++++++.|+
T Consensus 90 ~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 90 MESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888877
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0015 Score=67.50 Aligned_cols=177 Identities=13% Similarity=0.026 Sum_probs=128.3
Q ss_pred HHHHHHHHHhccC---CChhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCc-HHHHHHH
Q 004024 457 VEEAYHAFEEIVD---KDVISWNTMIAGYARHGF--GKDALMLFESMKTVGIKP-DDITMVGILSACSHTGL-VEKGTEY 529 (778)
Q Consensus 457 ~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~--~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~-~~~a~~~ 529 (778)
++++...++.+.. ++..+|+--...+...|+ +++++++++++.+ ..| |...|..-...+.+.|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 5778888887754 578889988888888884 8999999999998 556 55677777777778888 6999999
Q ss_pred HHHchhhcCCCCChHHHHHHHHHHhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----
Q 004024 530 FYSMNRDYGVIPNSKHYTCMVDLLGRA--------------GRLDEAQNLMKNM-PFEP-DAATWGALLGACRLY----- 588 (778)
Q Consensus 530 ~~~m~~~~~~~p~~~~y~~lv~~l~r~--------------g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~----- 588 (778)
+..+.+.. .-|...|+....++.+. +.++++++.+++. ...| |..+|+-+-+.+...
T Consensus 168 ~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 99998642 22555666666665554 5688999988876 3455 578998777666555
Q ss_pred ------CChHHHHHHHHHHHhcCCCCCchHHHHHHHh---hhcCCcchHHHHHHHHHh
Q 004024 589 ------GKTELAEKAAEVIFEMEPENAGMYVLLSNLY---AASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 589 ------g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y---~~~g~~~~a~~~~~~m~~ 637 (778)
+-++.+...++++++++|++.-.+..++.+. ...|..+++...+..+.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4578999999999999999854443333222 234666666666666665
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.72 E-value=7.9e-05 Score=65.08 Aligned_cols=114 Identities=10% Similarity=-0.051 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
..|..+...+...|++++|+..|++.... .| +...+..+...+...|++++|..+|+...... |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~--------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE--------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc---------
Confidence 35666666677777777777777776662 33 23334444444445555555555554443221 00
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 552 LLGRAGRLDEAQNLMKNMPFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
..++ ..+|..+..++...|+++.|...+++++++.| ++.....+..++.
T Consensus 71 -------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 71 -------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp -------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred -------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 0122 45666677777777788888888888877777 4555555555443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00013 Score=66.25 Aligned_cols=132 Identities=17% Similarity=0.090 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIK-PDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
.+|..+...|...|++++|++.+++..+..-. ++... ....+..+..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------------------------------~~~~~~~l~~ 57 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--------------------------------ERIAYSNLGN 57 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH--------------------------------HHHHHHHHHH
Confidence 35666777777778888888877776652100 11000 0123444445
Q ss_pred HHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CCchHHHHHH
Q 004024 552 LLGRAGRLDEAQNLMKNM----PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPE------NAGMYVLLSN 617 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~------~~~~y~~L~~ 617 (778)
.+...|++++|.+.+++. +-.++ ..++..+...+...|+++.|...+++++++.+. .+..+..++.
T Consensus 58 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 137 (164)
T 3ro3_A 58 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGN 137 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHH
Confidence 555555555555554443 10111 335566666677777777777777777765321 1345777888
Q ss_pred HhhhcCCcchHHHHHHHHH
Q 004024 618 LYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 618 ~y~~~g~~~~a~~~~~~m~ 636 (778)
+|...|++++|.+.++...
T Consensus 138 ~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 138 AYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 8888888888888776654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00015 Score=65.81 Aligned_cols=136 Identities=15% Similarity=0.052 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KD----VISWNTMIAGYARHGFGKDALMLFESMKTVGIK-PD---- 506 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~-pd---- 506 (778)
..++..+...|...|++++|...|++..+ ++ ..++..+...|...|++++|++.+++..+..-. ++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678888999999999999999988754 22 136777888888999999999999887652100 11
Q ss_pred hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 004024 507 DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPD-AATWGALLGAC 585 (778)
Q Consensus 507 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~-~~~~~~Ll~a~ 585 (778)
...+..+...+...|++++|.++++..... .++.+..+. ..++..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----------------------------~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-----------------------------AQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----------------------------HHHccchHhHHHHHHHHHHHH
Confidence 122333334444445555555444433221 111111111 33556666777
Q ss_pred HHcCChHHHHHHHHHHHhcC
Q 004024 586 RLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 586 ~~~g~~~~a~~~~~~~~~l~ 605 (778)
...|+.+.|...+++++++.
T Consensus 140 ~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHH
Confidence 77777777777777777654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.68 E-value=6.1e-05 Score=68.40 Aligned_cols=117 Identities=14% Similarity=-0.001 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVD 551 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~ 551 (778)
..|......+...|++++|++.|++.++ +.|+...- +.....| +...|..+..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~------------------------~a~~~~~~~a~a~~n~g~ 65 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE------------------------EAFDHAGFDAFCHAGLAE 65 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT------------------------SCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch------------------------hhhhhccchHHHHHHHHH
Confidence 3466667777888888888888888887 56651100 0000000 1224455555
Q ss_pred HHhhcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 552 LLGRAGRLDEAQNLMKNM--------PFEPD-AATW----GALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m--------~~~p~-~~~~----~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
++.+.|++++|+..+++. ++.|+ ...| .....++...|++++|...++++++++|++.+.+--+
T Consensus 66 al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 66 ALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 555555555555544433 44887 5588 9999999999999999999999999999997665444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00057 Score=59.66 Aligned_cols=74 Identities=14% Similarity=0.033 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNL 618 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~ 618 (778)
.+..+...+.+.|++++|.+.+++. ...|+ +.++..+..++...|+.+.|...++++++..|+++........+
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 3444555555666666666655544 12232 44566677777788888888888888888888876554444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00015 Score=79.57 Aligned_cols=124 Identities=10% Similarity=0.007 Sum_probs=88.6
Q ss_pred hccCcHHHHHHHHHHchhhcC--CC---C-ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHH
Q 004024 518 SHTGLVEKGTEYFYSMNRDYG--VI---P-NSKHYTCMVDLLGRAGRLDEAQNLMKNM---------PFEPD-AATWGAL 581 (778)
Q Consensus 518 ~~~g~~~~a~~~~~~m~~~~~--~~---p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~-~~~~~~L 581 (778)
...|++++|..+++...+... +. | ...+++.|..+|...|++++|+.++++. +-.|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 344555555555544432211 11 2 2456777788888888888888777664 34455 4578899
Q ss_pred HHHHHHcCChHHHHHHHHHHHh-----cCCCCCch---HHHHHHHhhhcCCcchHHHHHHHHHhCCCc
Q 004024 582 LGACRLYGKTELAEKAAEVIFE-----MEPENAGM---YVLLSNLYAASGRWGDVSKVRLKMRDRGVK 641 (778)
Q Consensus 582 l~a~~~~g~~~~a~~~~~~~~~-----l~p~~~~~---y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~ 641 (778)
...|...|++++|+.+++++++ +.|++|.+ +..|...+...|++++|..+++.++++-.+
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999887 46777654 457788899999999999999999885433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00015 Score=63.25 Aligned_cols=92 Identities=10% Similarity=0.040 Sum_probs=56.8
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCh
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKT 591 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~ 591 (778)
..+...|++++|...|+...+. .| +...|..+..++.+.|++++|+..+++. .+.|+ ...|..|..++...|+.
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3444444555555544444432 22 3455666666777777777777777665 34553 66788888888888999
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 004024 592 ELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 592 ~~a~~~~~~~~~l~p~~~ 609 (778)
+.|...++++++++|+++
T Consensus 102 ~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhCcCCC
Confidence 999999999999888764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00012 Score=62.01 Aligned_cols=91 Identities=12% Similarity=-0.004 Sum_probs=76.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CchHH
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPEN------AGMYV 613 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~------~~~y~ 613 (778)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888999999999988876 3344 57789999999999999999999999999999998 77888
Q ss_pred HHHHHhhhcCCcchHHHHH
Q 004024 614 LLSNLYAASGRWGDVSKVR 632 (778)
Q Consensus 614 ~L~~~y~~~g~~~~a~~~~ 632 (778)
.++.++...|+.++|.+.+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 8999999999888876543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00012 Score=76.87 Aligned_cols=146 Identities=12% Similarity=-0.012 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
..|..+...+.+.|++++|+..|++... +.|+... +...|..+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3466677777888999999999998877 5566442 234444444443321 2357778888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh-hcCCcchHH
Q 004024 553 LGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA-ASGRWGDVS 629 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~-~~g~~~~a~ 629 (778)
|.+.|++++|++.+++. ...| +...|..+..++...|+++.|+..++++++++|+++.++..|..+.. ..+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999888776 3445 46788889999999999999999999999999999988888888844 456677777
Q ss_pred HHHHHHHhC
Q 004024 630 KVRLKMRDR 638 (778)
Q Consensus 630 ~~~~~m~~~ 638 (778)
+.++.|-+.
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 777766543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.60 E-value=5.3e-05 Score=65.58 Aligned_cols=98 Identities=12% Similarity=0.051 Sum_probs=63.7
Q ss_pred CcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHH
Q 004024 521 GLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKA 597 (778)
Q Consensus 521 g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~ 597 (778)
|++++|...|+...+...-.| +...+..+..+|.+.|++++|.+.+++. ...|+ ..+|..+..++...|+++.|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555554442100012 3455666777777788888888777766 33443 66788888888999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHH
Q 004024 598 AEVIFEMEPENAGMYVLLSNL 618 (778)
Q Consensus 598 ~~~~~~l~p~~~~~y~~L~~~ 618 (778)
++++++..|+++........+
T Consensus 84 ~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 84 LLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHH
Confidence 999999999887654433333
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00028 Score=74.98 Aligned_cols=137 Identities=9% Similarity=-0.014 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHH
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMV 550 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv 550 (778)
...|..+...|.+.|++++|++.|++..+ +.|+.. ..-..+++. ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~--~~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLR--YVEGSR----------AAAEDADGA----------KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhhcCc----------cccChHHHH----------HHHHHHHHHHHHHH
Confidence 34688888889999999999999988776 111110 000011110 1222 456788889
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 551 DLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 551 ~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
.+|.+.|++++|++.+++. ...|+ ...|..+..++...|+++.|...++++++++|++...+..|+.++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877 55664 678999999999999999999999999999999999999999999988887776
Q ss_pred HH
Q 004024 629 SK 630 (778)
Q Consensus 629 ~~ 630 (778)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0004 Score=76.15 Aligned_cols=96 Identities=7% Similarity=-0.061 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD----------------AATWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----------------~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
...|..+...|.+.|++++|...+++. .+.|+ ..+|..+..++...|+++.|...++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 334555666667777777777766655 11222 5788899999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 606 PENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 606 p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
|+++.+|..++.+|...|++++|.+.++...+.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00021 Score=75.86 Aligned_cols=63 Identities=8% Similarity=-0.035 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 575 AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 575 ~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..+|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|.+.++...+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 568889999999999999999999999999999999999999999999999999999988765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00066 Score=73.56 Aligned_cols=158 Identities=10% Similarity=-0.031 Sum_probs=119.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCh----------------hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCCh
Q 004024 480 AGYARHGFGKDALMLFESMKTVGIKPDD----------------ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNS 543 (778)
Q Consensus 480 ~~~~~~g~~~~Al~l~~~m~~~g~~pd~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 543 (778)
..+...|++++|++.|.+..+..-.... ..+..+...|...|+++++.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4467789999999999999884322111 136778899999999999999999887654444433
Q ss_pred H----HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------
Q 004024 544 K----HYTCMVDLLGRAGRLDEAQNLMKNM-------PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEME------ 605 (778)
Q Consensus 544 ~----~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~------ 605 (778)
. ..+.+...+...|..++|.+++++. ...+. ..++..|...+...|+++.|...++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2 3444555566789999999887665 22333 4578889999999999999999999988642
Q ss_pred CCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 606 PENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 606 p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
|.....|..++.+|...|++++|...++....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345788999999999999999999877653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00032 Score=56.86 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456677778888888888888888766 3334 46788889999999999999999999999999999999999998887
Q ss_pred hcC
Q 004024 621 ASG 623 (778)
Q Consensus 621 ~~g 623 (778)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00017 Score=66.47 Aligned_cols=123 Identities=16% Similarity=0.038 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHH
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVG------IKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKH 545 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g------~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 545 (778)
...|......+.+.|++++|+..|++....- -.|+...+ ..+. .-+...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~~-----~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VELD-----RKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHHH-----HTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHHH-----HHHHHH
Confidence 4467777788888888888888888877620 01111100 0000 113456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC-chHHHHHHHh
Q 004024 546 YTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENA-GMYVLLSNLY 619 (778)
Q Consensus 546 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~-~~y~~L~~~y 619 (778)
|..+..+|.+.|++++|+..+++. .+.|+ ...|..+..++...|+++.|...++++++++|+++ .....|..+.
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 778888888999999999888776 34554 67899999999999999999999999999999987 5555555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0003 Score=58.83 Aligned_cols=64 Identities=23% Similarity=0.188 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 574 DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 574 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++.+|..+...+...|+++.|+..++++++++|+++.+|..|+.+|...|++++|.+.++...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4778999999999999999999999999999999999999999999999999999999887654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00029 Score=77.41 Aligned_cols=115 Identities=13% Similarity=-0.011 Sum_probs=89.1
Q ss_pred HHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCC---chHH
Q 004024 552 LLGRAGRLDEAQNLMKNM---------PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFE-----MEPENA---GMYV 613 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~y~ 613 (778)
.+...|++++|+.++++. +-.|+ ..+++.|..+|...|++++|+..++++++ +.|+++ ..|.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455789999999888665 23344 45889999999999999999999999987 356665 4578
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 004024 614 LLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQ 684 (778)
Q Consensus 614 ~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~ 684 (778)
.|+.+|..+|++++|..++++..+.-. +.- ...||.+.++...|.+...+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~l-----------------G~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-VTH-----------------GPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT-----------------CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-HHh-----------------CCCChHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999887654211 111 13699999999988888766654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00038 Score=75.29 Aligned_cols=114 Identities=13% Similarity=0.076 Sum_probs=83.2
Q ss_pred HHhhcCCHHHHHHHHHhC------CCCC---C-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCC---chHH
Q 004024 552 LLGRAGRLDEAQNLMKNM------PFEP---D-AATWGALLGACRLYGKTELAEKAAEVIFE-----MEPENA---GMYV 613 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m------~~~p---~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~y~ 613 (778)
-+.+.|++++|++++++. -+.| + ..+++.|..+|...|++++|+..++++++ +.|++| ..|.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344566777777766544 1223 2 34788888889999999999999998886 345554 4577
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 004024 614 LLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLK 683 (778)
Q Consensus 614 ~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~ 683 (778)
.|+.+|..+|++++|..++++..+.- .+.- ...||.+.+++..|.+...+|+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~-~~~l-----------------G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIM-RVTH-----------------GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-HHHT-----------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHH-HHhc-----------------CCCChHHHHHHHHHHHHHHHHh
Confidence 89999999999999999887765421 1111 2369999999999999888876
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00033 Score=60.06 Aligned_cols=76 Identities=8% Similarity=0.004 Sum_probs=63.2
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 562 AQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 562 A~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
|.+.+++. ...| +...|..+...+...|+++.|+..++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444443 3345 4678888989999999999999999999999999999999999999999999999999887665
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0002 Score=75.10 Aligned_cols=112 Identities=8% Similarity=-0.018 Sum_probs=82.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004024 509 TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLY 588 (778)
Q Consensus 509 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~ 588 (778)
.+..+...+...|++++|...|...... .|+.. .+...|+.+++...+. ..+|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 4455555666667777777777665532 23221 1223344444443332 13788888999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 589 GKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 589 g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
|+++.|...++++++++|+++.+|..++.+|...|++++|.+.++...+
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999886654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00078 Score=55.41 Aligned_cols=69 Identities=19% Similarity=0.119 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCC
Q 004024 572 EPDAATWGALLGACRLYGK---TELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 572 ~p~~~~~~~Ll~a~~~~g~---~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~ 640 (778)
.+|+..|..+..++...++ .+.|...++++++++|+++.+...|++++...|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567888888888876665 79999999999999999999999999999999999999999999987644
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00015 Score=65.75 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=64.9
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCCchHHHHHHHhhh
Q 004024 554 GRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGK----------TELAEKAAEVIFEMEPENAGMYVLLSNLYAA 621 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~----------~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~ 621 (778)
.|.+++++|.+.+++. ...| ++..|..+..++...++ +++|+..++++++++|+++.+|..|+++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3455666666666555 3344 35566666666665554 5699999999999999999999999999998
Q ss_pred cC-----------CcchHHHHHHHHHhC
Q 004024 622 SG-----------RWGDVSKVRLKMRDR 638 (778)
Q Consensus 622 ~g-----------~~~~a~~~~~~m~~~ 638 (778)
.| ++++|.+.+++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 75 899999999988764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00041 Score=74.89 Aligned_cols=104 Identities=16% Similarity=0.037 Sum_probs=73.1
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCC---chHHHHHH
Q 004024 556 AGRLDEAQNLMKNM---------PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFE-----MEPENA---GMYVLLSN 617 (778)
Q Consensus 556 ~g~~~eA~~~~~~m---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~y~~L~~ 617 (778)
.|++++|+.++++. +-.|+ ..+++.|..+|...|++++|+.+++++++ +.|+++ ..|..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666655443 23344 34788888889999999999999998886 345554 45788999
Q ss_pred HhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHH
Q 004024 618 LYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKVHTFSVGDTLHPEKDRIYAYLEE 677 (778)
Q Consensus 618 ~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~ 677 (778)
+|..+|++++|..++++..+.-. +.- ...||.+.+++..|++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~-~~l-----------------G~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIME-VAH-----------------GKDHPYISEIKQEIES 432 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH-HHT-----------------CTTCHHHHHHHHHHHC
T ss_pred HHHhccCHHHHHHHHHHHHHHHH-HHc-----------------CCCChHHHHHHHHHhc
Confidence 99999999999999877654211 111 2369999888877653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0013 Score=55.39 Aligned_cols=66 Identities=9% Similarity=-0.034 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 573 PDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 573 p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
++...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+.++...+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356688889999999999999999999999999999999999999999999999999999887763
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00063 Score=61.54 Aligned_cols=101 Identities=11% Similarity=0.017 Sum_probs=61.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHH
Q 004024 483 ARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDE 561 (778)
Q Consensus 483 ~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~e 561 (778)
.+.+++++|++.+++..+ ..|+ ...+..+..++...|+++.|.... +.+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------~~~~e 64 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAK--------------------------QMIQE 64 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------HHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhH--------------------------hHHHH
Confidence 345556666666666666 4553 334444555555554433222111 01446
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhcCCCCCch
Q 004024 562 AQNLMKNM-PFEPD-AATWGALLGACRLY-----------GKTELAEKAAEVIFEMEPENAGM 611 (778)
Q Consensus 562 A~~~~~~m-~~~p~-~~~~~~Ll~a~~~~-----------g~~~~a~~~~~~~~~l~p~~~~~ 611 (778)
|+..+++. .+.|+ ..+|..|..+|... |++++|...++++++++|++..+
T Consensus 65 Ai~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 65 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 66666555 44554 45677777777665 58999999999999999998433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0042 Score=49.94 Aligned_cols=63 Identities=24% Similarity=0.308 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 575 AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 575 ~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 567888889999999999999999999999999999999999999999999999999887765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.017 Score=59.91 Aligned_cols=139 Identities=14% Similarity=0.058 Sum_probs=68.2
Q ss_pred CChhHHHHHHHHHH--HcCC---hHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCCh
Q 004024 470 KDVISWNTMIAGYA--RHGF---GKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNS 543 (778)
Q Consensus 470 ~d~~~~~~li~~~~--~~g~---~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 543 (778)
.|...|...+.|.. ..+. ..+|+.+|++.++ ..|+.. .+..+..++.. .. .++ |..
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~----------~~----~~~--~~~ 253 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV----------RH----SQH--PLD 253 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH----------HH----HHS--CCC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH----------Hh----ccC--CCc
Confidence 47788888876654 3333 4789999999998 788753 33333333320 00 001 100
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc
Q 004024 544 KHYTCMVDLLGRAGRLDEAQNLMKNMPFE-PDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS 622 (778)
Q Consensus 544 ~~y~~lv~~l~r~g~~~eA~~~~~~m~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~ 622 (778)
... ...+.+|.+....++.. .++.+|.++.-.....|+++.|...++++++++|+ ...|..++.++.-.
T Consensus 254 ~~~---------~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~ 323 (372)
T 3ly7_A 254 EKQ---------LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMK 323 (372)
T ss_dssp HHH---------HHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHT
T ss_pred hhh---------HHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHC
Confidence 000 00012222222222222 23445555444444455555555555555555543 34455555555555
Q ss_pred CCcchHHHHHHHHH
Q 004024 623 GRWGDVSKVRLKMR 636 (778)
Q Consensus 623 g~~~~a~~~~~~m~ 636 (778)
|++++|.+.++...
T Consensus 324 G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 324 GMNREAADAYLTAF 337 (372)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0018 Score=68.24 Aligned_cols=356 Identities=12% Similarity=0.157 Sum_probs=222.4
Q ss_pred HhHHHHHHhhcCCchhhhHhhhhCCCCChhhHHHHHHHHHhCCCchHHHHHHhhCC--CCCcchHHHHHHHHHcCCChhH
Q 004024 64 WNVAITTHMRNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMP--QRDLVSWNVMISGYVRNKSLSA 141 (778)
Q Consensus 64 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~ 141 (778)
|..+-.+.+..++..+|+..|-+. .|+..|..+|....+.|.+++-.+.+.-.. .++...=+.|+-+|++.+++.+
T Consensus 57 Ws~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~e 134 (624)
T 3lvg_A 57 WSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE 134 (624)
T ss_dssp SSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSST
T ss_pred HHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHH
Confidence 455666777888888887655433 466678889999999999999998877665 3677778999999999999776
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcc------------------------cCCcchHHHHHHHHHh
Q 004024 142 ARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRML------------------------EKNEISWNGLLAAYVQ 197 (778)
Q Consensus 142 A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~------------------------~~d~~t~~~ll~~~~~ 197 (778)
-..+. ..||+.-...+.+-|...|.++.|.-+|..+. ..+..||-.+-.+|..
T Consensus 135 lEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd 211 (624)
T 3lvg_A 135 LEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD 211 (624)
T ss_dssp TTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHH
T ss_pred HHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhC
Confidence 43332 24777777888888999999999988888763 1367899999999999
Q ss_pred cCCHHHHHHHHHhc-ccCCccHhhHHHHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHh--
Q 004024 198 NGRIEEACMLFESK-ANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFE-- 271 (778)
Q Consensus 198 ~g~~~~a~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~-- 271 (778)
.+++.-|.-.--.+ +..+ -...|+..|-+.|.+++-..+++.-. ....-.++-|.-.|+|-. .++-.+-++
T Consensus 212 ~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~-PeKlmEHlklf 288 (624)
T 3lvg_A 212 GKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF 288 (624)
T ss_dssp SCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSC-TTHHHHHHTTS
T ss_pred chHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence 99887664332111 1111 12345556777777777777776544 345667777777777752 333333332
Q ss_pred --hCCCC-------CeehHHHHHHHHHhcCChHHHHHH-------------HHhCCC--CCcchHHHHHH----------
Q 004024 272 --EAPVK-------DVFTWTAMVSGYVQNGKVDEARMI-------------FDAMPE--KNTVSWNAMIA---------- 317 (778)
Q Consensus 272 --~m~~~-------d~~~~~~li~~~~~~g~~~~A~~l-------------~~~m~~--~~~~t~~~ll~---------- 317 (778)
++--| ....|.-++-.|.+-..++.|... |.++.. .|...|...|+
T Consensus 289 ~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL 368 (624)
T 3lvg_A 289 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLL 368 (624)
T ss_dssp SSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTS
T ss_pred HHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHH
Confidence 22222 344677788778777777766432 111111 13333333333
Q ss_pred -----HHhccCChHHHHHHHHhhc-------------cc-cccHHHHHHHHHHhcCChhHHHHHhhhCCCCCe-------
Q 004024 318 -----GYVQTKRMDMARELFEAMT-------------CK-NVASWNTMITGYAQSGEITHARNLFDRMPQHDC------- 371 (778)
Q Consensus 318 -----~~~~~~~~~~a~~i~~~~~-------------~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~------- 371 (778)
++...=|.....+++.... .. +..+-.++-+.|....+++.-+.-.+.-..=|.
T Consensus 369 ~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rL 448 (624)
T 3lvg_A 369 NDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRL 448 (624)
T ss_dssp HHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHH
T ss_pred HHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHH
Confidence 3333333334444444332 22 334555777788887777665555443322221
Q ss_pred -----eehhhH-HHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcC
Q 004024 372 -----ISWAAI-IAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVG 436 (778)
Q Consensus 372 -----~~~~~l-i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 436 (778)
.-+.-+ ...|-+++++++++.+.+ ..--|.-.+...+.+++.+.+.++.++.+..|
T Consensus 449 EkHeL~eFRrIAA~LYkkn~rw~qsi~l~K---------kDklykDAietAa~S~~~elaeeLL~yFv~~g 510 (624)
T 3lvg_A 449 EKHELIEFRRIAAYLFKGNNRWKQSVELCK---------KDSLYKDAMQYASESKDTELAEELLQWFLQEE 510 (624)
T ss_dssp HTCSSHHHHHHHHHHHHTTCHHHHHSSCSS---------TTCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC
T ss_pred hhCchHHHHHHHHHHHHhcccHHHHHHHHH---------hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 111111 223566777777765432 22345556667778888888888888888776
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0085 Score=53.25 Aligned_cols=111 Identities=10% Similarity=-0.105 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 004024 486 GFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNL 565 (778)
Q Consensus 486 g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~ 565 (778)
++.++|++.|++..+.| .|+.. +-..+...+.+++|.++|+...+.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----------------------------- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----------------------------- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-----------------------------
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-----------------------------
Confidence 35666777777666655 23322 334444445555555555554432
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhh----cCCcchHHHHHHHHHh
Q 004024 566 MKNMPFEPDAATWGALLGACRL----YGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAA----SGRWGDVSKVRLKMRD 637 (778)
Q Consensus 566 ~~~m~~~p~~~~~~~Ll~a~~~----~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~----~g~~~~a~~~~~~m~~ 637 (778)
-++..+..|...+.. .+|.++|...++++.+. .++..+..|+.+|.. .++.++|.+.+++..+
T Consensus 55 -------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 55 -------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp -------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 233344444444443 45555555555555554 345556666666666 5666666666665555
Q ss_pred CC
Q 004024 638 RG 639 (778)
Q Consensus 638 ~g 639 (778)
.|
T Consensus 126 ~g 127 (138)
T 1klx_A 126 LG 127 (138)
T ss_dssp TT
T ss_pred CC
Confidence 44
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0066 Score=53.98 Aligned_cols=106 Identities=4% Similarity=-0.043 Sum_probs=68.3
Q ss_pred cCCHHHHHHHHHhccC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhc----cCcHHHHHH
Q 004024 454 CGSVEEAYHAFEEIVD-KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSH----TGLVEKGTE 528 (778)
Q Consensus 454 ~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~ 528 (778)
.+++++|.+.|++..+ .+.... |...|...+..++|++.|++..+.| +......+-..+.+ .++.++|.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3568899999998755 344555 6677777778899999999999865 45555566666655 667777777
Q ss_pred HHHHchhhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHh
Q 004024 529 YFYSMNRDYGVIPNSKHYTCMVDLLGR----AGRLDEAQNLMKN 568 (778)
Q Consensus 529 ~~~~m~~~~~~~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~ 568 (778)
+|+...+. | +...+..|..+|.. .+++++|.+.+++
T Consensus 83 ~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 83 YYSKACGL-N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp HHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHcC-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 77766543 2 33344444444444 4444444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.017 Score=64.83 Aligned_cols=146 Identities=12% Similarity=0.013 Sum_probs=115.6
Q ss_pred CChHHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccCc----------HHHHHHHHHHchhhcCCCC-ChHHHHHHHHHH
Q 004024 486 GFGKDALMLFESMKTVGIKPDDIT-MVGILSACSHTGL----------VEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLL 553 (778)
Q Consensus 486 g~~~~Al~l~~~m~~~g~~pd~~t-~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l 553 (778)
...++|++.++++.+ +.|+..| |+.--.++.+.|. +++++++++.+.+. .| +...|..-..++
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 345789999999999 7887654 5555555556666 89999999999864 34 455677677778
Q ss_pred hhcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhc------
Q 004024 554 GRAG--RLDEAQNLMKNM-PFEP-DAATWGALLGACRLYG-KTELAEKAAEVIFEMEPENAGMYVLLSNLYAAS------ 622 (778)
Q Consensus 554 ~r~g--~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g-~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~------ 622 (778)
.+.| ++++|+++++++ ...| +..+|+.-..+....| ..+.+...++++++.+|.|..+|...+.++...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8888 789999999988 3444 6789999999988999 889999999999999999999999999988774
Q ss_pred --------CCcchHHHHHHHHH
Q 004024 623 --------GRWGDVSKVRLKMR 636 (778)
Q Consensus 623 --------g~~~~a~~~~~~m~ 636 (778)
++++++.+..+..-
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHH
Confidence 44567766655443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.011 Score=63.70 Aligned_cols=72 Identities=10% Similarity=0.014 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCC
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM---------PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFE-----MEPE 607 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~-----l~p~ 607 (778)
..+++.|..+|...|++++|+.++++. +-.|+ ..+++.|...|...|++++|+.+++++++ +.|+
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~ 419 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD 419 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Confidence 355777777777778888777776655 34455 44788999999999999999999999887 4677
Q ss_pred CCchHHH
Q 004024 608 NAGMYVL 614 (778)
Q Consensus 608 ~~~~y~~ 614 (778)
+|.+-.+
T Consensus 420 Hp~~~~l 426 (433)
T 3qww_A 420 HPYISEI 426 (433)
T ss_dssp CHHHHHH
T ss_pred ChHHHHH
Confidence 7655443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.011 Score=50.36 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=30.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHch
Q 004024 471 DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMN 534 (778)
Q Consensus 471 d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 534 (778)
+...|..+...|...|++++|+..|++..+ ..|+ ...+..+..++...|+.++|...|+...
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555555555555555554 2332 2334444444555555555555555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0074 Score=49.62 Aligned_cols=64 Identities=17% Similarity=0.276 Sum_probs=40.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 004024 549 MVDLLGRAGRLDEAQNLMKNM-PFEP-DAA-TWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMY 612 (778)
Q Consensus 549 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~-~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y 612 (778)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|+++.|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344556667777777766655 2333 345 666666666667777777777777777777666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.019 Score=61.89 Aligned_cols=72 Identities=19% Similarity=0.080 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCC
Q 004024 544 KHYTCMVDLLGRAGRLDEAQNLMKNM---------PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFE-----MEPEN 608 (778)
Q Consensus 544 ~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~ 608 (778)
.+++.+..+|...|++++|+.++++. +..|+ ..+++.|...+...|++++|+..++++++ +.|++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44556666666666666666665544 34455 44788888889999999999999998886 46887
Q ss_pred CchHHHH
Q 004024 609 AGMYVLL 615 (778)
Q Consensus 609 ~~~y~~L 615 (778)
|.+-.++
T Consensus 410 p~~~~~~ 416 (429)
T 3qwp_A 410 SLIEDLI 416 (429)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 6655444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.011 Score=48.96 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHc
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSM 533 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m 533 (778)
...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.|+..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444444455555555555554444 2332 223444444444444444444444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.016 Score=47.48 Aligned_cols=86 Identities=14% Similarity=0.097 Sum_probs=58.5
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCC-ChH-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc
Q 004024 513 ILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSK-HYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLY 588 (778)
Q Consensus 513 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~-~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~ 588 (778)
....+...|++++|.+.|+...+. .| +.. .|..+..+|.+.|++++|.+.+++. ...|+ ..+|..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 445667788888888888887754 34 445 7777888888888888888888776 33443 223311
Q ss_pred CChHHHHHHHHHHHhcCCCCC
Q 004024 589 GKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 589 g~~~~a~~~~~~~~~l~p~~~ 609 (778)
+.++.+...+++..+.+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 455666777777777777654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.2 Score=58.66 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=31.8
Q ss_pred HHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004024 450 MYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMK 499 (778)
Q Consensus 450 ~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 499 (778)
.+..+|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 661 ~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 345567777777766554 345667777777777777777777777654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.11 Score=60.88 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=29.4
Q ss_pred HHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHh
Q 004024 349 GYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMK 398 (778)
Q Consensus 349 ~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~ 398 (778)
.+.++|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3455666666666665553 23456666666666666666666666654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.24 Score=42.52 Aligned_cols=139 Identities=10% Similarity=0.068 Sum_probs=91.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 004024 484 RHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQ 563 (778)
Q Consensus 484 ~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 563 (778)
..|..++..++..+.... .+..-++.++.-...+-+-+-..+.++++-+.|.+. .+|++....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHHH
Confidence 346666777777666542 233344445544444444444455555554443332 355565555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCc
Q 004024 564 NLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVK 641 (778)
Q Consensus 564 ~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~ 641 (778)
.-+-.+. .+....+--|......|..++-.++...++.-+|-+|...+-++++|.+.|...++.++++..-++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 5555543 233344555677778899898888888877777778899999999999999999999999999999985
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.021 Score=56.76 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=72.3
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCChHHHHHHHHHHHhcCCCC-CchHHHHHHHhhhc-CCcch
Q 004024 559 LDEAQNLMKNM-PFEPD---AATWGALLGACRL-----YGKTELAEKAAEVIFEMEPEN-AGMYVLLSNLYAAS-GRWGD 627 (778)
Q Consensus 559 ~~eA~~~~~~m-~~~p~---~~~~~~Ll~a~~~-----~g~~~~a~~~~~~~~~l~p~~-~~~y~~L~~~y~~~-g~~~~ 627 (778)
+.+|...+++. .+.|+ ...|.+|...|.. -|+.++|++.+++++++.|+. ..+++.++..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 55666666655 46676 5688888888888 499999999999999999975 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 004024 628 VSKVRLKMRDRGVKKVTG 645 (778)
Q Consensus 628 a~~~~~~m~~~g~~k~~g 645 (778)
+.+.++.......+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999988876665565
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.06 Score=55.71 Aligned_cols=39 Identities=8% Similarity=-0.078 Sum_probs=34.0
Q ss_pred HHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCC
Q 004024 601 IFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRG 639 (778)
Q Consensus 601 ~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g 639 (778)
.++++|.++..|..++.++...|++++|...++++...+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 346789999999999999998999999999999887765
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.039 Score=49.22 Aligned_cols=65 Identities=8% Similarity=-0.151 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 573 PDAATWGALLGACRLYG---KTELAEKAAEVIFEME-P-ENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 573 p~~~~~~~Ll~a~~~~g---~~~~a~~~~~~~~~l~-p-~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++..+.-.+.+++.+.+ +.++|..+++.+++.+ | ++...+..|+-.|.+.|++++|.+.++...+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444444444444 3345555555555554 4 2334444555555555555555555554443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.47 Score=43.35 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=85.6
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHH
Q 004024 449 VMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTE 528 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 528 (778)
+....+|+++.|.++-+.+ .+...|..+......+|+.+-|.+.|.+... |..++--|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456789999999988776 4677899999999999999999999987643 4455555666777765554
Q ss_pred HHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004024 529 YFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVI 601 (778)
Q Consensus 529 ~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~ 601 (778)
.-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.+. -..+.+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 43332221 1 14444455556788888888887775333222 1224577777777776544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.14 Score=42.54 Aligned_cols=73 Identities=12% Similarity=0.034 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 004024 543 SKHYTCMVDLLGRAGRLDEAQNLMKNM-----P----FEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYV 613 (778)
Q Consensus 543 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-----~----~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~ 613 (778)
..-+-.|...+.+.|+++.|...++.. + -.+...++..|..++.+.|+++.|...++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334445666666677776666665543 1 1234668899999999999999999999999999999976654
Q ss_pred HH
Q 004024 614 LL 615 (778)
Q Consensus 614 ~L 615 (778)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 44
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.0053 Score=64.82 Aligned_cols=232 Identities=12% Similarity=0.157 Sum_probs=130.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCC--CcchHHHHHHHHhccCChH
Q 004024 249 SWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEK--NTVSWNAMIAGYVQTKRMD 326 (778)
Q Consensus 249 ~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~t~~~ll~~~~~~~~~~ 326 (778)
+|..|..++.+.|.+.+|.+.|-+ ..|+..|..+|.+..+.|.+++-+..+...++. ++..=+.++-+|++.+++.
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~ 133 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA 133 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSS
T ss_pred HHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHH
Confidence 445555555555555544444322 223344445555555555555555544444332 3344444555555555543
Q ss_pred HHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCC------------------------CCCeeehhhHHHHHH
Q 004024 327 MARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMP------------------------QHDCISWAAIIAGYA 382 (778)
Q Consensus 327 ~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~------------------------~~d~~~~~~li~~~~ 382 (778)
+-.++. ..+|+.-.....+-+...|.++.|.-+|..+. ..++.+|-.+-.+|.
T Consensus 134 elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACv 210 (624)
T 3lvg_A 134 ELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 210 (624)
T ss_dssp TTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHH
T ss_pred HHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHh
Confidence 321111 13444444444455555555555555554442 246678999999999
Q ss_pred hcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHH
Q 004024 383 QSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGF-EAGCFVGNALLVMYCKCGSVEEAY 461 (778)
Q Consensus 383 ~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~Li~~y~k~g~~~~A~ 461 (778)
..+.+.-|--.--.+. ....-+..++.-|-..|.+++-..+++.-. |+ .....+++-|.-.|+|- +.++-.
T Consensus 211 d~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY-~PeKlm 282 (624)
T 3lvg_A 211 DGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF-KPQKMR 282 (624)
T ss_dssp HSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHH
T ss_pred CchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc-CHHHHH
Confidence 9988876644332222 233345667777888888887777776654 33 35677888999999986 344444
Q ss_pred HHHHhccC----C-------ChhHHHHHHHHHHHcCChHHHHH
Q 004024 462 HAFEEIVD----K-------DVISWNTMIAGYARHGFGKDALM 493 (778)
Q Consensus 462 ~~f~~m~~----~-------d~~~~~~li~~~~~~g~~~~Al~ 493 (778)
+.++.... | ....|.-++-.|.+...++.|..
T Consensus 283 EHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 283 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 44433221 2 44578888888888888887654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.29 Score=43.63 Aligned_cols=40 Identities=20% Similarity=-0.020 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
..+-.|.-++.+.|+++.|.+.++++++++|+|..+..+.
T Consensus 72 d~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 72 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3445566778899999999999999999999985554443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.16 Score=41.26 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 541 PNSKHYTCMVDLLGRAGR---LDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 541 p~~~~y~~lv~~l~r~g~---~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
++...+..+..++...+. .++|..++++. ...|+ +..+..|...+...|+++.|...++++++.+|.+ .....+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~i 82 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVTI 82 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHHH
Confidence 466777777777755544 68888888876 45665 5677778888889999999999999999999984 334344
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.23 Score=56.66 Aligned_cols=53 Identities=13% Similarity=0.002 Sum_probs=49.4
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHH
Q 004024 583 GACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKM 635 (778)
Q Consensus 583 ~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m 635 (778)
.-|...|+++.|..+++++...-|.+-.++..|+.+|...|+|+.|.-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44677899999999999999999999999999999999999999999888876
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=91.45 E-value=1.1 Score=37.01 Aligned_cols=64 Identities=13% Similarity=-0.048 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 574 DAATWGALLGACRLYGKTELAEKAAEVIFEME-------PENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 574 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~-------p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++.-.-.|...+...|+++.|...++.+++.. +..+..+..|+.+|.+.|++++|....+...+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34455678888999999999999999999853 23456789999999999999999999888765
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=90.90 E-value=9.2 Score=35.71 Aligned_cols=83 Identities=10% Similarity=0.033 Sum_probs=39.3
Q ss_pred CCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhc
Q 004024 242 MPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQ 321 (778)
Q Consensus 242 m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~ 321 (778)
+..+|..+-...+.++.+.|..+....+.+.+..+|...-...+.++.+.|..+..-.+...+..+|..+-...+.++..
T Consensus 90 l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE 169 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33445555555555555555543333344444445544444555555555544322222333333455555555555555
Q ss_pred cCC
Q 004024 322 TKR 324 (778)
Q Consensus 322 ~~~ 324 (778)
.+.
T Consensus 170 ~~~ 172 (211)
T 3ltm_A 170 IGG 172 (211)
T ss_dssp HCS
T ss_pred hCc
Confidence 554
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=90.87 E-value=9.4 Score=35.33 Aligned_cols=88 Identities=9% Similarity=0.038 Sum_probs=41.5
Q ss_pred HHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHH
Q 004024 238 IFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIA 317 (778)
Q Consensus 238 ~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~ 317 (778)
+...+..+|..+-...+.++.+.|..+....+...+..+|...-...+.++.+.|..+..-.+...+..++..+-...+.
T Consensus 81 L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~ 160 (201)
T 3ltj_A 81 LIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAAD 160 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33333445555555555555555554433444444444454444445555555554332222333333345555555555
Q ss_pred HHhccCCh
Q 004024 318 GYVQTKRM 325 (778)
Q Consensus 318 ~~~~~~~~ 325 (778)
++...+..
T Consensus 161 aL~~~~~~ 168 (201)
T 3ltj_A 161 ALGEIGGE 168 (201)
T ss_dssp HHHHHCSH
T ss_pred HHHHhCch
Confidence 55555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.80 E-value=9.4 Score=34.73 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=84.6
Q ss_pred ccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 418 NLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFES 497 (778)
Q Consensus 418 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~ 497 (778)
..|+++.|.++-..+ .+...|..|.+...+.|+++-|++.|.+..+ +..+.--|...|+.+.-.++-+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHH
Confidence 456777777765544 3677899999999999999999999998765 44455556667887776666655
Q ss_pred HHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhh-cCCHHHHHHHHHhCC
Q 004024 498 MKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGR-AGRLDEAQNLMKNMP 570 (778)
Q Consensus 498 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r-~g~~~eA~~~~~~m~ 570 (778)
....| -++.....+...|+++++.++|.+.. --|.. -.+++ -|.-+.|.++.++++
T Consensus 86 A~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~----r~~eA-------~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 86 AQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG----SLPLA-------YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT----CHHHH-------HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC----ChHHH-------HHHHHHcCcHHHHHHHHHHhC
Confidence 55544 24455556677899999998886642 22211 12222 466777777877763
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.53 E-value=3.4 Score=35.96 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=13.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCC
Q 004024 583 GACRLYGKTELAEKAAEVIFEMEPEN 608 (778)
Q Consensus 583 ~a~~~~g~~~~a~~~~~~~~~l~p~~ 608 (778)
-++.+.|+++.|.+..+.+++.+|+|
T Consensus 85 vg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 85 IGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 34444555555555555555555554
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=90.16 E-value=9 Score=35.78 Aligned_cols=183 Identities=7% Similarity=0.022 Sum_probs=83.9
Q ss_pred CchHHHHHHhhCCCCCcchHHHHHHHHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcccCCcc
Q 004024 107 QLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEI 186 (778)
Q Consensus 107 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~ 186 (778)
..+....+...+..+|...-...+..+.+.|..+..-.+.+.+..+|..+-...+.++.+.|..+....+...+..+|..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~ 96 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGW 96 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHH
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHH
Confidence 33334444455555665555555566666555444444444444555544444455555554432222222222233333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHH
Q 004024 187 SWNGLLAAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEA 266 (778)
Q Consensus 187 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A 266 (778)
.-...+.+ +.+.|..+....+...+..+|..+-...+.++.+.|..+..
T Consensus 97 vr~~a~~a-------------------------------L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~ 145 (211)
T 3ltm_A 97 VRQSAAVA-------------------------------LGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAV 145 (211)
T ss_dssp HHHHHHHH-------------------------------HHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH
T ss_pred HHHHHHHH-------------------------------HHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33333333 33334333333333333445555555555555555554433
Q ss_pred HHHHhhCCCCCeehHHHHHHHHHhcCChHHHHHHHHhCC-CCCcchHHHHHHHHhc
Q 004024 267 QRLFEEAPVKDVFTWTAMVSGYVQNGKVDEARMIFDAMP-EKNTVSWNAMIAGYVQ 321 (778)
Q Consensus 267 ~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~~~~t~~~ll~~~~~ 321 (778)
..+.+.+..+|...-...+.++.+.|. .++...+..+. .++..+-...+.++..
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 333344444555455555555555554 33444444333 2344444444444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=89.99 E-value=0.34 Score=48.09 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHCCCCCC---hhHHHHHHHHHhcc-----CcHHHHHHHHHHchhhcCCCC--ChHHHHHHHHHHhhc-C
Q 004024 489 KDALMLFESMKTVGIKPD---DITMVGILSACSHT-----GLVEKGTEYFYSMNRDYGVIP--NSKHYTCMVDLLGRA-G 557 (778)
Q Consensus 489 ~~Al~l~~~m~~~g~~pd---~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p--~~~~y~~lv~~l~r~-g 557 (778)
.+|..++++.++ +.|+ ...+..+...|... |+.++|.++|++..+ +.| +..++..+.+.|++. |
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcC
Confidence 455555555555 5555 23444444444442 555555555554442 233 134444444444442 4
Q ss_pred CHHHHHHHHHh
Q 004024 558 RLDEAQNLMKN 568 (778)
Q Consensus 558 ~~~eA~~~~~~ 568 (778)
+.++|.+.+++
T Consensus 255 d~~~a~~~L~k 265 (301)
T 3u64_A 255 NRAGFDEALDR 265 (301)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 44444444433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.98 E-value=2.3 Score=36.32 Aligned_cols=75 Identities=17% Similarity=0.017 Sum_probs=46.6
Q ss_pred CChHHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C-C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 004024 541 PNSKHYTCMVDLLGRAGRLDE---AQNLMKNM-PFE-P-D-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYV 613 (778)
Q Consensus 541 p~~~~y~~lv~~l~r~g~~~e---A~~~~~~m-~~~-p-~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~ 613 (778)
|+..+---+..+|.++....+ ++.++++. ... | + -...-.|.-++.+.|+++.|.+.++.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444445555555554443 55555444 111 2 1 123344567788999999999999999999999965554
Q ss_pred HH
Q 004024 614 LL 615 (778)
Q Consensus 614 ~L 615 (778)
+.
T Consensus 113 Lk 114 (126)
T 1nzn_A 113 LE 114 (126)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=89.93 E-value=7.6 Score=35.96 Aligned_cols=175 Identities=7% Similarity=0.012 Sum_probs=79.1
Q ss_pred HHHhhCCCCCcchHHHHHHHHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHHH
Q 004024 113 QVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLL 192 (778)
Q Consensus 113 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll 192 (778)
.+.+.+..+|...-...+..+.+.|.....-.+.+.+..+|..+-...+.++.+.|..+....+...+..+|...-...+
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~ 97 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAA 97 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34445555666666666666666665444444444444555544444455555555433332233323233433333333
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCCCCChhHHHHHHHHHhcCCCHHHHHHHHhh
Q 004024 193 AAYVQNGRIEEACMLFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMPVRDEVSWNTMITGYAQNNYLAEAQRLFEE 272 (778)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~y~~~g~~~~A~~~f~~ 272 (778)
.+.. +.|..+....+...+..+|..+-...+.++.+.|..+....+.+.
T Consensus 98 ~aL~-------------------------------~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~ 146 (201)
T 3ltj_A 98 VALG-------------------------------QIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKA 146 (201)
T ss_dssp HHHH-------------------------------HHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHH-------------------------------HhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3333 333333333333333345555555555555555544333333333
Q ss_pred CCCCCeehHHHHHHHHHhcCChHHHHHHHHhCC-CCCcchHHHHHHHH
Q 004024 273 APVKDVFTWTAMVSGYVQNGKVDEARMIFDAMP-EKNTVSWNAMIAGY 319 (778)
Q Consensus 273 m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~~~~t~~~ll~~~ 319 (778)
+..+|...-...+.++.+.|.. ++...+..+. .++...-...+.++
T Consensus 147 l~d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL 193 (201)
T 3ltj_A 147 LKDEDGWVRQSAADALGEIGGE-RVRAAMEKLAETGTGFARKVAVNYL 193 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCch-hHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4444544444555555555543 3333333332 23433333333333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.78 E-value=0.77 Score=39.31 Aligned_cols=89 Identities=10% Similarity=-0.000 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHcCChH---HHHHHHHHHHhcC-C-CCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCccCCcee
Q 004024 573 PDAATWGALLGACRLYGKTE---LAEKAAEVIFEME-P-ENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYS 647 (778)
Q Consensus 573 p~~~~~~~Ll~a~~~~g~~~---~a~~~~~~~~~l~-p-~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s 647 (778)
|+..+--.+.+++....+.. +|+.+++.++.-+ | ..-.....|+-.|.+.|++++|.+..+.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~--------- 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------- 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---------
Confidence 66777677777777776554 4889999888876 5 34566778999999999999999999988762
Q ss_pred EEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCc
Q 004024 648 WLEVQNKVHTFSVGDTLHPEKDRIYAYLEELEFKLKQDGF 687 (778)
Q Consensus 648 ~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~gy 687 (778)
+|...+.....+-+..+|.+.|+
T Consensus 104 -----------------eP~n~QA~~Lk~~i~~~i~kdGl 126 (126)
T 1nzn_A 104 -----------------EPQNNQAKELERLIDKAMKKDGL 126 (126)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHC--
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHhccC
Confidence 45555666666666778887773
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=89.17 E-value=25 Score=39.36 Aligned_cols=80 Identities=13% Similarity=0.042 Sum_probs=42.2
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhc---CChhHHH
Q 004024 284 MVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQS---GEITHAR 360 (778)
Q Consensus 284 li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~---g~~~~A~ 360 (778)
....+.-.|+++.|++.+-.....|.+.+...+.-+.-.+- ...++..-......-+..||..|.+. .+..+|.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~~~gLL~~---~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al 376 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLASLKLFKI---DSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAV 376 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHHHTTC--------------------CHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhcCchhHHHHHHHHHHcCCccC---CCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHH
Confidence 45566678999999998887733366666655555444332 11111110011122356778888764 5677777
Q ss_pred HHhhhC
Q 004024 361 NLFDRM 366 (778)
Q Consensus 361 ~~f~~m 366 (778)
+.|--+
T Consensus 377 ~Y~~li 382 (661)
T 2qx5_A 377 EYLVLI 382 (661)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 766555
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=86.84 E-value=43 Score=37.27 Aligned_cols=123 Identities=9% Similarity=0.128 Sum_probs=73.3
Q ss_pred CChHHHHHHHHHHHHCCCCCChhHHH----HHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHH
Q 004024 486 GFGKDALMLFESMKTVGIKPDDITMV----GILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDE 561 (778)
Q Consensus 486 g~~~~Al~l~~~m~~~g~~pd~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~e 561 (778)
.+.+.|..++......+ ..+..... .+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37789999998886543 22332222 2222333444355666666664332 2333333344444557899999
Q ss_pred HHHHHHhCCCCC-CHHHHH-HHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 562 AQNLMKNMPFEP-DAATWG-ALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 562 A~~~~~~m~~~p-~~~~~~-~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
|...|+.|+-.+ +..-|. =+..+....|+.+.|...++++.+ + ...|-.|+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lA 356 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVA 356 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHH
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHH
Confidence 999999997443 222221 123455678999999999999875 3 25666664
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.44 E-value=10 Score=30.54 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=57.4
Q ss_pred cHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 421 SLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 421 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
..++|.-|-+.+...+. ...+.-.-+..+...|++++|..+.+....||++.|-++-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555566666655543 33333233344667899999999999999999999988755 366777887777777776
Q ss_pred CCCCCChhHHH
Q 004024 501 VGIKPDDITMV 511 (778)
Q Consensus 501 ~g~~pd~~t~~ 511 (778)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45545553
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.39 E-value=4 Score=35.07 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=39.0
Q ss_pred CCChHHHHHHHHHHhhcCCHH---HHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 004024 540 IPNSKHYTCMVDLLGRAGRLD---EAQNLMKNM-PFEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 540 ~p~~~~y~~lv~~l~r~g~~~---eA~~~~~~m-~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
.|+..+---+..++.++...+ +++.++++. ...|. -..+--|.-|+.+.|+++.|.+..+.+++.+|+|.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 355555445555566655443 445554444 11231 23444555666677777777777777777777763
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.90 E-value=48 Score=33.17 Aligned_cols=182 Identities=10% Similarity=0.050 Sum_probs=101.0
Q ss_pred HHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHH----
Q 004024 318 GYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRL---- 393 (778)
Q Consensus 318 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l---- 393 (778)
.....|++-+|.|.+ .++..=|.+.+++++|.+++..- ...+.+.|+...|-++
T Consensus 22 ~~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHH
Confidence 344456666665544 45666677777777777775332 1223444554443332
Q ss_pred HHHHhhcCcccCcccccchHHHhcccc-----cHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004024 394 FIEMKRYGERLNRSPFTSVLSTCANLA-----SLELGKQLHGQLVKVGF--EAGCFVGNALLVMYCKCGSVEEAYHAFEE 466 (778)
Q Consensus 394 ~~~m~~~g~~pd~~t~~~ll~a~~~~~-----~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 466 (778)
.+-..+.++++|..+...++..+.... ..+-......+..+.|- ..++.+...+...|.+.|++.+|+..|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 333334456666555444444333211 22223333444444432 34788899999999999999999998863
Q ss_pred ccCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhh
Q 004024 467 IVDKDVISWNTMIAGYARH---GFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRD 536 (778)
Q Consensus 467 m~~~d~~~~~~li~~~~~~---g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 536 (778)
-...|...+..|+.-+... |...++--+.-+ ++| -+.-.|++..|...|+...+.
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------aVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------LVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------HHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------HHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 3323566666666555544 544443222221 122 244567888888888776543
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.90 E-value=9.7 Score=30.62 Aligned_cols=86 Identities=12% Similarity=0.035 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004024 421 SLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKT 500 (778)
Q Consensus 421 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~ 500 (778)
..++|.-|-+.+...+. ...+.-.-+..+...|++++|..+.+....||++.|-++-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34556666666655543 33333233345667899999999999999999999988754 477888888888878877
Q ss_pred CCCCCChhHHH
Q 004024 501 VGIKPDDITMV 511 (778)
Q Consensus 501 ~g~~pd~~t~~ 511 (778)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 55555554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.60 E-value=51 Score=33.29 Aligned_cols=182 Identities=12% Similarity=0.071 Sum_probs=99.7
Q ss_pred HHHhccCCh---HHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHH
Q 004024 317 AGYVQTKRM---DMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRL 393 (778)
Q Consensus 317 ~~~~~~~~~---~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l 393 (778)
......|++ -+|.|.+ .++..=|.+.+++++|.+++-.- ...+.+.|+..-|-++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~~-----------RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQET-----------RLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHHH-----------HHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHH
Confidence 344456666 5555443 45666677888888888775331 2224444554443333
Q ss_pred ----HHHHhhcCcccCcccccchHHHhccccc-----HHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHH
Q 004024 394 ----FIEMKRYGERLNRSPFTSVLSTCANLAS-----LELGKQLHGQLVKVG--FEAGCFVGNALLVMYCKCGSVEEAYH 462 (778)
Q Consensus 394 ----~~~m~~~g~~pd~~t~~~ll~a~~~~~~-----~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~k~g~~~~A~~ 462 (778)
.+-..+.++++|..+..-++..+..... ..-..+...+-.+.| -.-|+.+...+...|.+.|++.+|+.
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 3444445666666655555444443322 122223333444444 34578888899999999999999999
Q ss_pred HHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchh
Q 004024 463 AFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNR 535 (778)
Q Consensus 463 ~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 535 (778)
.|---.++.+..+..|+.-+...+...++- ...-.++| -|.-.+++..|...|+...+
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~e~d--------------lfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESHTAP--------------LYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGGGHH--------------HHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCccHH--------------HHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 984322233356655555544443322221 11112222 34456788888777666544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 778 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 2e-06
Identities = 44/353 (12%), Positives = 101/353 (28%), Gaps = 21/353 (5%)
Query: 288 YVQNGKVDEARMIFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFE---AMTCKNVA 341
Q G + A + + NT + + + Q +R+D +
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE 68
Query: 342 SWNTMITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYG 401
+++ + Y + G++ A + + I A + D
Sbjct: 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128
Query: 402 ERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALL-VMYCKCGSVEEA 460
+ A L + L + + V + L ++ G + A
Sbjct: 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188
Query: 461 YHAFE---EIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSAC 517
H FE + + ++ + A+ + ++ + +
Sbjct: 189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV-HGNLACVY 247
Query: 518 SHTGLVEKGTEYF---YSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKN--MPFE 572
GL++ + + + + Y + + L G + EA++
Sbjct: 248 YEQGLIDLAIDTYRRAIELQPHF-----PDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 573 PDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRW 625
A + L R G E A + E+ PE A + L+++ G+
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 2e-05
Identities = 41/384 (10%), Positives = 105/384 (27%), Gaps = 22/384 (5%)
Query: 257 YAQNNYLAEAQRLFEEA----PVKDVFTWTAMVSGYVQNGKVDEARMIFDAMPEKNTVSW 312
Q A+R + P + + S + Q ++D + ++N +
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA 67
Query: 313 NAMIA-GYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLFDRMPQHDC 371
A G V +R + + + + +
Sbjct: 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127
Query: 372 ISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQ 431
+ + + + +E + + +NL + +
Sbjct: 128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL 187
Query: 432 LVKVGFEAG------CFVGNALLVMYCKCGSVEEAYHAFE---EIVDKDVISWNTMIAGY 482
+ +A L + + + A A+ + + + Y
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247
Query: 483 ARHGFGKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP 541
G A+ + + + ++P + +A G V + + + + R
Sbjct: 248 YEQGLIDLAIDTYR--RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PT 303
Query: 542 NSKHYTCMVDLLGRAGRLDEA-QNLMKNMPFEPDAATWGALLGACRLY-GKTELAEKAAE 599
++ + ++ G ++EA + K + P+ A + L + GK + A +
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363
Query: 600 VIFEMEPENAGMYVLLSNLYAASG 623
+ P A Y + N
Sbjct: 364 EAIRISPTFADAYSNMGNTLKEMQ 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 778 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.84 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.48 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.39 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.9 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.86 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.81 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.78 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.78 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.78 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.74 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.74 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.68 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.65 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.38 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.35 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.33 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.23 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.18 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.17 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.12 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.09 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.08 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.05 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.05 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.02 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.0 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.94 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.9 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.9 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.85 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.79 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.78 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.75 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.75 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.69 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.69 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.59 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.49 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.48 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.38 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.27 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.23 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.11 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.08 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.06 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.04 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.0 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 96.99 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.92 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.58 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.58 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.5 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.09 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.4 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.1 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.3 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 88.03 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 87.18 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 86.95 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4e-20 Score=196.77 Aligned_cols=359 Identities=12% Similarity=0.089 Sum_probs=244.5
Q ss_pred HHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCC--C-CeehHHHHHHHHHhcCChHHHHH
Q 004024 226 FVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPV--K-DVFTWTAMVSGYVQNGKVDEARM 299 (778)
Q Consensus 226 ~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~ 299 (778)
+.+.|++++|.+.|+++. +.++.++..+...|.+.|++++|...|++..+ | +..+|..+...|.+.|++++|+.
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccc
Confidence 344444445544444443 23556666677777777777777777766542 2 44566677777777777777777
Q ss_pred HHHhCCCC---CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCC--C-C
Q 004024 300 IFDAMPEK---NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQ--H-D 370 (778)
Q Consensus 300 l~~~m~~~---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d 370 (778)
.+...... +..............+....+........ .............+...+....+...+..... | +
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T d1w3ba_ 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcch
Confidence 77666532 22223333333333333333333332222 22333333344444444444444444443321 1 2
Q ss_pred eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 004024 371 CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVM 450 (778)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 450 (778)
...+..+...+...|+.++|...+.+.. +.. +.+...+..+...
T Consensus 169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al-----------------------------------~~~-p~~~~~~~~l~~~ 212 (388)
T d1w3ba_ 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAV-----------------------------------TLD-PNFLDAYINLGNV 212 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------------------------------HHC-TTCHHHHHHHHHH
T ss_pred hHHHHhhcccccccCcHHHHHHHHHHHH-----------------------------------HhC-cccHHHHHHHhhh
Confidence 2334444444555555555555554443 322 3345667778888
Q ss_pred HHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHH
Q 004024 451 YCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 451 y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 526 (778)
|...|++++|...|++... .+...|..+...|...|++++|++.|++..+ +.|+ ..++..+...+...|+.++|
T Consensus 213 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A 290 (388)
T d1w3ba_ 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHH
T ss_pred hhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999987754 4667788889999999999999999999988 6675 45788888899999999999
Q ss_pred HHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 527 TEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
.+.++..... .+.+...+..+..++.+.|++++|++.+++. ...|+ +.+|..+..++...|+++.|...+++++++
T Consensus 291 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 291 EDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999988763 3446778888999999999999999999886 56775 668999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHhhhcCC
Q 004024 605 EPENAGMYVLLSNLYAASGR 624 (778)
Q Consensus 605 ~p~~~~~y~~L~~~y~~~g~ 624 (778)
+|+++.+|..|+++|.+.|+
T Consensus 369 ~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 369 SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.3e-18 Score=184.72 Aligned_cols=346 Identities=14% Similarity=0.109 Sum_probs=249.0
Q ss_pred HHHHhcCChHHHHHHHHhCCC--C-CcchHHHHHHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHH
Q 004024 286 SGYVQNGKVDEARMIFDAMPE--K-NTVSWNAMIAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHA 359 (778)
Q Consensus 286 ~~~~~~g~~~~A~~l~~~m~~--~-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A 359 (778)
..+.+.|++++|++.|+++.+ | +...+..+..++...|++++|...+..++ +.+..++..+...|.+.|++++|
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccc
Confidence 344555666666666655542 2 44555555666666666666666666655 34455666666777777777777
Q ss_pred HHHhhhCCCC---CeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcC
Q 004024 360 RNLFDRMPQH---DCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVG 436 (778)
Q Consensus 360 ~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 436 (778)
...|....+. +...+..........+....+............ .+..............+....+...........
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T d1w3ba_ 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhhccC
Confidence 7776665432 222333333444444555555555544443322 222222223333444555555666555555443
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHH
Q 004024 437 FEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGI 513 (778)
Q Consensus 437 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~l 513 (778)
+.+...+..+...+...|+.++|...+++..+ .+..+|..+...+...|++++|+..|++....+ ..+...+..+
T Consensus 166 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 243 (388)
T d1w3ba_ 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNL 243 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred -cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHH
Confidence 44567778888999999999999999998754 456789999999999999999999999998843 2345567778
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCC
Q 004024 514 LSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-P-FEPDAATWGALLGACRLYGK 590 (778)
Q Consensus 514 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~-~~p~~~~~~~Ll~a~~~~g~ 590 (778)
...+...|++++|.+.|+...+ +.| +...|..+..+|.+.|++++|++.++.. . .+.+...|..+...+...|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 244 ACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCC
Confidence 8899999999999999998875 345 4678889999999999999999999876 2 34467789999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 591 TELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 591 ~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
++.|...++++++++|+++.++..++.+|...|++++|.+.++...+
T Consensus 321 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=9.5e-13 Score=135.97 Aligned_cols=223 Identities=13% Similarity=0.073 Sum_probs=172.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 004024 377 IIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGS 456 (778)
Q Consensus 377 li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 456 (778)
....+.+.|++++|+..|++..+.. +.+...+..+...|.+.|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~------------------------------------P~~~~a~~~lg~~~~~~~~ 68 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD------------------------------------PKHMEAWQYLGTTQAENEQ 68 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC------------------------------------TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC------------------------------------CCCHHHHHHHHHHHHHcCC
Confidence 3444667777777777777766532 3345566677778888888
Q ss_pred HHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHH----------------HHHHHHH
Q 004024 457 VEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITM----------------VGILSAC 517 (778)
Q Consensus 457 ~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~----------------~~ll~a~ 517 (778)
+++|...|++..+ .+...|..+...|...|+.++|++.+++... +.|+...+ ...+..+
T Consensus 69 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (323)
T d1fcha_ 69 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 146 (323)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC---------------CTTHHH
T ss_pred hHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHH--hccchHHHHHhhhhhhhhcccccchhhHHHH
Confidence 8888888887643 3567788888888888888888888888876 44442211 1112233
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHH
Q 004024 518 SHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAE 595 (778)
Q Consensus 518 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~ 595 (778)
...+..+++.+.|....+...-.++...+..+..++.+.|++++|.+.+++. ...|+ ..+|..+...+...|+++.|.
T Consensus 147 ~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 226 (323)
T d1fcha_ 147 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 226 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHH
Confidence 4456778888888887765444556788889999999999999999999886 34554 778999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 596 KAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 596 ~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..++++++++|+++.++..|+.+|...|++++|.+.++...+
T Consensus 227 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 227 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887655
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=5.8e-12 Score=129.88 Aligned_cols=260 Identities=15% Similarity=0.111 Sum_probs=138.0
Q ss_pred HHHHhccCChHHHHHHHHhhc---cccccHHHHHHHHHHhcCChhHHHHHhhhCCC---CCeeehhhHHHHHHhcCChhH
Q 004024 316 IAGYVQTKRMDMARELFEAMT---CKNVASWNTMITGYAQSGEITHARNLFDRMPQ---HDCISWAAIIAGYAQSGYSED 389 (778)
Q Consensus 316 l~~~~~~~~~~~a~~i~~~~~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~ 389 (778)
...+.+.|++++|...|+.++ +.++.+|..+...|...|++++|...|++..+ .+...|..+...|...|++++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 105 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQ 105 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 334455555555555555555 33445566666666666666666666665432 234556666677777777777
Q ss_pred HHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 004024 390 SLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD 469 (778)
Q Consensus 390 Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 469 (778)
|++.+.+.... .|+...+............+ ......+..+.+.+..++|...|.
T Consensus 106 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~a~~~~~---- 160 (323)
T d1fcha_ 106 ACEILRDWLRY--TPAYAHLVTPAEEGAGGAGL-------------------GPSKRILGSLLSDSLFLEVKELFL---- 160 (323)
T ss_dssp HHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH----
T ss_pred cccchhhHHHh--ccchHHHHHhhhhhhhhccc-------------------ccchhhHHHHHHhhHHHHHHHHHH----
Confidence 77777776652 34332221111100000000 000001111222233344444443
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHH
Q 004024 470 KDVISWNTMIAGYARHGFGKDALMLFESMKTVG-IKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYT 547 (778)
Q Consensus 470 ~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~ 547 (778)
+..+.. -.++...+..+...+...|++++|..+|+..... .| +...|.
T Consensus 161 ---------------------------~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~ 210 (323)
T d1fcha_ 161 ---------------------------AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWN 210 (323)
T ss_dssp ---------------------------HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred ---------------------------HHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchh
Confidence 333311 0112223333444444444444444444444322 12 344566
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH-----------HH
Q 004024 548 CMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMY-----------VL 614 (778)
Q Consensus 548 ~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y-----------~~ 614 (778)
.+...|.+.|++++|.+.+++. ...|+ +.+|..|..+|...|+++.|...++++++++|++...+ ..
T Consensus 211 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 290 (323)
T d1fcha_ 211 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWST 290 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHH
T ss_pred hhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHH
Confidence 6667777777777777777665 34554 66888999999999999999999999999999876643 34
Q ss_pred HHHHhhhcCCcchHHH
Q 004024 615 LSNLYAASGRWGDVSK 630 (778)
Q Consensus 615 L~~~y~~~g~~~~a~~ 630 (778)
|...+...|+++.+..
T Consensus 291 l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 291 LRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHTCGGGHHH
T ss_pred HHHHHHHcCCHHHHHH
Confidence 5556666677765543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=2.8e-08 Score=101.22 Aligned_cols=219 Identities=11% Similarity=0.122 Sum_probs=157.2
Q ss_pred hhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 004024 374 WAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCK 453 (778)
Q Consensus 374 ~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 453 (778)
++-+-..+.+.+.+++|+++++++.+. .| .+...|+.....+.+
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP----------------------------------~~~~a~~~r~~~l~~ 89 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIEL--NA----------------------------------ANYTVWHFRRVLLKS 89 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHH--CT----------------------------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHH--CC----------------------------------CChHHHHHHHHHHHH
Confidence 445555667777888888888877763 23 345556666667777
Q ss_pred cC-CHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHH
Q 004024 454 CG-SVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTE 528 (778)
Q Consensus 454 ~g-~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~ 528 (778)
.| ++++|...+++..+ .+..+|+.+...+...|++++|++.|+++.+ +.|+ ...|..+...+.+.|++++|.+
T Consensus 90 l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~ 167 (315)
T d2h6fa1 90 LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQ 167 (315)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred hCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHH
Confidence 66 48888888887744 4677888888888888999999999988888 6664 5578888888888889999988
Q ss_pred HHHHchhhcCCCC-ChHHHHHHHHHHhhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHH
Q 004024 529 YFYSMNRDYGVIP-NSKHYTCMVDLLGRAGR------LDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAE 599 (778)
Q Consensus 529 ~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~------~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~ 599 (778)
.|+.+.+. .| +...|+.+..++.+.|. +++|++.+.+. ...| +...|..+...+.. ...+.+...++
T Consensus 168 ~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~ 243 (315)
T d2h6fa1 168 YVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLN 243 (315)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHH
T ss_pred HHHHHHHH---CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHH
Confidence 88888753 45 45567666666666554 67888877665 4455 57788888776654 44688899999
Q ss_pred HHHhcCCCCCch--HHHHHHHhhhc--CCcchHHHHHHH
Q 004024 600 VIFEMEPENAGM--YVLLSNLYAAS--GRWGDVSKVRLK 634 (778)
Q Consensus 600 ~~~~l~p~~~~~--y~~L~~~y~~~--g~~~~a~~~~~~ 634 (778)
++.+++|+.... +..++.+|... +..+.+.+.++.
T Consensus 244 ~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~k 282 (315)
T d2h6fa1 244 QLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 282 (315)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999876554 45677777554 555555554443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=7.5e-08 Score=98.83 Aligned_cols=261 Identities=15% Similarity=0.059 Sum_probs=170.1
Q ss_pred HHHHHhcCChhHHHHHhhhCCC--CC------eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcc
Q 004024 347 ITGYAQSGEITHARNLFDRMPQ--HD------CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCAN 418 (778)
Q Consensus 347 i~~y~k~g~~~~A~~~f~~m~~--~d------~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~ 418 (778)
...+...|++++|.+.|++..+ |+ ...++.+...|...|++++|+..|++........+..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----------- 87 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW----------- 87 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-----------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch-----------
Confidence 4456667777777777665421 11 1244555566666677777777666655421110000
Q ss_pred cccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-------CC----hhHHHHHHHHHHHcCC
Q 004024 419 LASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-------KD----VISWNTMIAGYARHGF 487 (778)
Q Consensus 419 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~d----~~~~~~li~~~~~~g~ 487 (778)
......+..+...|...|++..|...+..... +. ...+..+...+...|+
T Consensus 88 -------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 148 (366)
T d1hz4a_ 88 -------------------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 148 (366)
T ss_dssp -------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcc
Confidence 01122344556677788888888877766432 11 1245556677888899
Q ss_pred hHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC-----hHHHHHHHHHHhhcCC
Q 004024 488 GKDALMLFESMKTVGIKPD----DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN-----SKHYTCMVDLLGRAGR 558 (778)
Q Consensus 488 ~~~Al~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lv~~l~r~g~ 558 (778)
.+.|...+.+.....-..+ ..++......+...|...++...+........-... ...+..+...+...|+
T Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T d1hz4a_ 149 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 228 (366)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhccc
Confidence 9999998888776432211 234455556677788888888887766543322221 2345566778889999
Q ss_pred HHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHh------cCCCCCchHHHHHHHhhhcCCcc
Q 004024 559 LDEAQNLMKNM-PFEP-----DAATWGALLGACRLYGKTELAEKAAEVIFE------MEPENAGMYVLLSNLYAASGRWG 626 (778)
Q Consensus 559 ~~eA~~~~~~m-~~~p-----~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~------l~p~~~~~y~~L~~~y~~~g~~~ 626 (778)
+++|.+.+++. ...| ....+..+..++...|+.+.|...++++++ ..|.....+..++.+|...|+++
T Consensus 229 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 308 (366)
T d1hz4a_ 229 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 308 (366)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHH
Confidence 99999999876 2222 134566778889999999999999999875 34556678899999999999999
Q ss_pred hHHHHHHHHHh
Q 004024 627 DVSKVRLKMRD 637 (778)
Q Consensus 627 ~a~~~~~~m~~ 637 (778)
+|.+.++...+
T Consensus 309 ~A~~~l~~Al~ 319 (366)
T d1hz4a_ 309 DAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998876543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=1.4e-07 Score=95.59 Aligned_cols=187 Identities=11% Similarity=0.073 Sum_probs=149.3
Q ss_pred ccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-C-hhHHHHHHHHHHHcCChHHHHHHH
Q 004024 420 ASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-D-VISWNTMIAGYARHGFGKDALMLF 495 (778)
Q Consensus 420 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d-~~~~~~li~~~~~~g~~~~Al~l~ 495 (778)
+..+.+..+++..++...+.+..++...+..+.+.|+++.|+.+|+++.+ | + ...|...+..+.+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45677788888888766677788889999999999999999999998855 2 3 347999999999999999999999
Q ss_pred HHHHHCCCCCChhHHHHHHH-HHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----C
Q 004024 496 ESMKTVGIKPDDITMVGILS-ACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM----P 570 (778)
Q Consensus 496 ~~m~~~g~~pd~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~ 570 (778)
+++.+.+.. +...|..... -+...|+.+.|..+|+.+.+.++ .+...+...++.+.+.|+++.|..+|++. |
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p--~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 999885322 2233333332 23456899999999999987533 34677889999999999999999999875 4
Q ss_pred CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 004024 571 FEPD--AATWGALLGACRLYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 571 ~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
..|+ ..+|...+.--..+|+.+.+..+.+++.++-|+..
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 4553 45899999888999999999999999999888764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=2.6e-07 Score=94.64 Aligned_cols=289 Identities=9% Similarity=-0.013 Sum_probs=189.2
Q ss_pred HHHHHhccCChHHHHHHHHhhc---ccc-----ccHHHHHHHHHHhcCChhHHHHHhhhCCC-----CC----eeehhhH
Q 004024 315 MIAGYVQTKRMDMARELFEAMT---CKN-----VASWNTMITGYAQSGEITHARNLFDRMPQ-----HD----CISWAAI 377 (778)
Q Consensus 315 ll~~~~~~~~~~~a~~i~~~~~---~~~-----~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~l 377 (778)
....+...|++++|.++++... +.+ ..+++.+...|...|++++|...|++..+ ++ ..++..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 4556788999999999999987 222 24677788999999999999999987643 11 1345556
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 004024 378 IAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSV 457 (778)
Q Consensus 378 i~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 457 (778)
...+...|++..|...+.+.......... .........+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~----------------------------~~~~~~~~~~~~la~~~~~~~~~ 149 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHL----------------------------EQLPMHEFLVRIRAQLLWAWARL 149 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------------------TTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhccc----------------------------chhhHHHHHHHHHHHHHHHhcch
Confidence 66777888888888888776542100000 00011122344566677788888
Q ss_pred HHHHHHHHhccC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCC----hhHHHHHHHHHhccCcH
Q 004024 458 EEAYHAFEEIVD--------KDVISWNTMIAGYARHGFGKDALMLFESMKTVG--IKPD----DITMVGILSACSHTGLV 523 (778)
Q Consensus 458 ~~A~~~f~~m~~--------~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g--~~pd----~~t~~~ll~a~~~~g~~ 523 (778)
+.|...+..... ....++..+...+...|+..++...+.+..... .... ...+......+...|+.
T Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T d1hz4a_ 150 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 229 (366)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccH
Confidence 888888776532 123345556666777888888888877655421 1111 12344455567788889
Q ss_pred HHHHHHHHHchhhcCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChHH
Q 004024 524 EKGTEYFYSMNRDYGVIP--NSKHYTCMVDLLGRAGRLDEAQNLMKNM-------PFEPD-AATWGALLGACRLYGKTEL 593 (778)
Q Consensus 524 ~~a~~~~~~m~~~~~~~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~Ll~a~~~~g~~~~ 593 (778)
+++...+........-.+ ....+..+...+...|++++|.+.+++. +..|+ ..+|..+...+...|+.+.
T Consensus 230 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 309 (366)
T d1hz4a_ 230 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 309 (366)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHH
Confidence 999888887654322111 2345566778888899999998887765 33444 4477888888999999999
Q ss_pred HHHHHHHHHhcCCCCC---------chHHHHHHHhhhcCCcchHHHH
Q 004024 594 AEKAAEVIFEMEPENA---------GMYVLLSNLYAASGRWGDVSKV 631 (778)
Q Consensus 594 a~~~~~~~~~l~p~~~---------~~y~~L~~~y~~~g~~~~a~~~ 631 (778)
|...+++++++.+... ..+..+...+...++.+++.+-
T Consensus 310 A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 310 AQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 9999999988754321 1223344445566777777553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.78 E-value=1.9e-09 Score=111.35 Aligned_cols=192 Identities=9% Similarity=-0.033 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHcCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 004024 422 LELGKQLHGQLVKVGFEAGCFVG-NALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFES 497 (778)
Q Consensus 422 ~~~a~~i~~~~~~~g~~~~~~~~-~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~ 497 (778)
.+.+...+..+++.. +++...+ ..+...|...|..++|...++...+ .+..+|+.+...+.+.|++++|...+++
T Consensus 125 ~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~ 203 (334)
T d1dcea1 125 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (334)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred HHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 444444444444432 2233333 3345677788999999999998876 3677899999999999999888776665
Q ss_pred HHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-H
Q 004024 498 MKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-A 575 (778)
Q Consensus 498 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~ 575 (778)
... +.|+.. .....+...+..+++...+...... -.++...+..++..+...|+.++|.+.+.+. +..|+ .
T Consensus 204 ~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 276 (334)
T d1dcea1 204 PEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCL 276 (334)
T ss_dssp CHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHH
Confidence 544 333332 2333445566677777777766542 2334555666777888889999999988776 55665 5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhh
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAA 621 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~ 621 (778)
.+|..+..++...|+.++|...++++++++|.+...|..|+..+.-
T Consensus 277 ~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 277 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 6888899999999999999999999999999998888888877653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=3.7e-08 Score=100.30 Aligned_cols=191 Identities=8% Similarity=0.042 Sum_probs=158.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCC-hhHHHHHHH
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARHG-FGKDALMLFESMKTVGIKPD-DITMVGILS 515 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g-~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~ 515 (778)
..+++-+...|.+.+..++|.++++++.+ | +...|+.....+...| +.++|++.+++..+ +.|+ ..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhH
Confidence 34455566778899999999999999865 3 5678999888888877 58999999999988 6776 457888888
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC--
Q 004024 516 ACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGK-- 590 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~-- 590 (778)
.+...|+.++|+++|+.+.+. .| +...|..+..++.+.|++++|++.++++ ...| +...|+.+...+...+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~---dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHhhccHHHHHHHHhhhhhh---hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccc
Confidence 999999999999999999853 45 5788999999999999999999999887 4566 47788887766665554
Q ss_pred ----hHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 591 ----TELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 591 ----~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.+.|...++++++++|++...+..++.++...| .+++.+.++...+
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 578999999999999999999999999987766 5777777776654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=2.4e-08 Score=98.42 Aligned_cols=192 Identities=13% Similarity=0.009 Sum_probs=106.7
Q ss_pred HhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHH
Q 004024 415 TCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDA 491 (778)
Q Consensus 415 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A 491 (778)
.+.+.|++++|.+.+..+++.. +.++.+++.+...|.+.|++++|.+.|++..+ | +..+|..+...|...|++++|
T Consensus 46 ~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 124 (259)
T d1xnfa_ 46 LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHH
Confidence 3444445555555554444432 34566677777788888888888888877754 2 455777777778888888888
Q ss_pred HHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhh---cCCHHHHHHHHH
Q 004024 492 LMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGR---AGRLDEAQNLMK 567 (778)
Q Consensus 492 l~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r---~g~~~eA~~~~~ 567 (778)
++.|++..+ ..|+. .....+..+....+..+....+....... .+....++.+-..++. .+..+.+...+.
T Consensus 125 ~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (259)
T d1xnfa_ 125 QDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWNIVEFYLGNISEQTLMERLKADAT 199 (259)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred HHHHHHHHh--hccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777 44543 23333333444445444444444443321 1222222221111111 122222222221
Q ss_pred hC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 004024 568 NM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMY 612 (778)
Q Consensus 568 ~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y 612 (778)
.. ...|+ ..+|..|...+...|+.+.|...++++++.+|++...|
T Consensus 200 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 200 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 11 11233 33666677777788888888888888888888775444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=3.1e-08 Score=97.55 Aligned_cols=192 Identities=11% Similarity=0.033 Sum_probs=137.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHH
Q 004024 441 CFVGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSA 516 (778)
Q Consensus 441 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a 516 (778)
..++..+...|.+.|++++|...|++..+ .++.+|+.+..+|...|++++|++.|++..+ +.|+. .++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHH
Confidence 34566678899999999999999998854 4788999999999999999999999999999 67764 478888889
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH----HHcCC
Q 004024 517 CSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPDAATWGALLGAC----RLYGK 590 (778)
Q Consensus 517 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~Ll~a~----~~~g~ 590 (778)
+...|+.++|.+.|+...+. .| +......+...+.+.+..+.+..+.... ...++...|..+ ..+ ...+.
T Consensus 115 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIV-EFYLGNISEQTL 190 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHH-HHHTTSSCHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHH-HHHHHHHHHHHH
Confidence 99999999999999988764 34 3444444445555666655554444333 112222223221 111 11222
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 591 TELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 591 ~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
.+.+...+.......|....+|..|+.+|...|++++|.+.++...+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 344444444455566777778899999999999999999999987653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.68 E-value=8.6e-09 Score=106.23 Aligned_cols=242 Identities=6% Similarity=-0.103 Sum_probs=169.3
Q ss_pred CChhHHHHHHHHHhhcCcccCccccc-----------chHHHhcccccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 004024 385 GYSEDSLRLFIEMKRYGERLNRSPFT-----------SVLSTCANLASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCK 453 (778)
Q Consensus 385 g~~~~Al~l~~~m~~~g~~pd~~t~~-----------~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 453 (778)
+..++|++++.+..+ ..||..+.- .........+.++++...+..+++.. +.+...+..+...+..
T Consensus 43 ~~~~~al~~~~~~l~--~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (334)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence 344677777776665 346554321 11112334456677777777777654 5566666667666666
Q ss_pred cC--CHHHHHHHHHhccC---CChhHHHHHH-HHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHH
Q 004024 454 CG--SVEEAYHAFEEIVD---KDVISWNTMI-AGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 454 ~g--~~~~A~~~f~~m~~---~d~~~~~~li-~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 526 (778)
.| +.++|...++++.+ ++...|...+ ..+...|..++|+..+++..+ ..|+ ...|..+...+...|+.++|
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--~~p~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcCHHHH
Confidence 65 48899999998754 4566665544 566778999999999998887 5664 45677788888888888877
Q ss_pred HHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 004024 527 TEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM--PFEPDAATWGALLGACRLYGKTELAEKAAEVIFEM 604 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l 604 (778)
...+....+. .|+ . ..+...+...+..++|...+.+. ...++...+..+...+...|+.+.|...+.++++.
T Consensus 198 ~~~~~~~~~~---~~~--~-~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 198 GPQGRLPENV---LLK--E-LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp SSCCSSCHHH---HHH--H-HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhHHh---HHH--H-HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6655544332 121 1 22334455667777777666554 22334556677777888889999999999999999
Q ss_pred CCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 605 EPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 605 ~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+|++..++..++.+|...|+.++|.+.++...+
T Consensus 272 ~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998766
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.65 E-value=1.1e-06 Score=88.95 Aligned_cols=182 Identities=8% Similarity=0.025 Sum_probs=144.2
Q ss_pred hcCCHHHHHHHHHhccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHhccCcHHHH
Q 004024 453 KCGSVEEAYHAFEEIVD----KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD--DITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 453 k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a 526 (778)
..+..++|..+|++..+ .+...|...+..+...|+.++|..+|+++.+ ..|. ...|...+..+.+.|.+++|
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~--~~~~~~~~~w~~~~~~~~~~~~~~~a 153 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHcCChHHH
Confidence 34556889999988643 4667899999999999999999999999987 4554 34688999999999999999
Q ss_pred HHHHHHchhhcCCCCChHHHHHHHHHH-hhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004024 527 TEYFYSMNRDYGVIPNSKHYTCMVDLL-GRAGRLDEAQNLMKNM-P-FEPDAATWGALLGACRLYGKTELAEKAAEVIFE 603 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p~~~~y~~lv~~l-~r~g~~~eA~~~~~~m-~-~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~ 603 (778)
.++|..+.+... .+...|....... ...|..+.|..+++.+ . .+.+...|...+......|+.+.|+.+++++++
T Consensus 154 r~i~~~al~~~~--~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 154 RMIFKKAREDAR--TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHTSTT--CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999876422 2344455444443 3468999999999887 2 233578999999999999999999999999999
Q ss_pred cCCCCCc----hHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 604 MEPENAG----MYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 604 l~p~~~~----~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
..|.++. .+......-...|+.+.+.++.+++.+.
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8876654 4666666667889999999999988763
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=7.2e-07 Score=75.67 Aligned_cols=88 Identities=11% Similarity=0.117 Sum_probs=69.7
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcch
Q 004024 550 VDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGD 627 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~ 627 (778)
.+.+.+.|++++|+..+++. ...| ++..|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 45566778888888877776 3445 466788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHh
Q 004024 628 VSKVRLKMRD 637 (778)
Q Consensus 628 a~~~~~~m~~ 637 (778)
|.+.++...+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 8888877665
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=4.8e-06 Score=77.35 Aligned_cols=140 Identities=12% Similarity=-0.034 Sum_probs=102.4
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHH
Q 004024 448 LVMYCKCGSVEEAYHAFEEIVDKDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKG 526 (778)
Q Consensus 448 i~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a 526 (778)
...+...|+++.|.+.|+++..++..+|..+...|...|++++|++.|++.++ +.|+. ..|..+..++.+.|+.++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 34577889999999999999889999999999999999999999999999998 66754 5778888888999999999
Q ss_pred HHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 004024 527 TEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEME 605 (778)
Q Consensus 527 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~ 605 (778)
.+.|+...... .++.. ++ +...| +..+++ ..+|..+..++...|+++.|...+++++++.
T Consensus 90 ~~~~~kAl~~~--~~n~~-----~~-~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQL--RGNQL-----ID-YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHTT--TTCSE-----EE-CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC--ccCch-----HH-HHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99888765421 11100 00 00000 011111 2345566677788888888888888888888
Q ss_pred CCC
Q 004024 606 PEN 608 (778)
Q Consensus 606 p~~ 608 (778)
|+.
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 775
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.33 E-value=7.1e-07 Score=83.66 Aligned_cols=95 Identities=11% Similarity=0.028 Sum_probs=47.2
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 004024 541 PNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNL 618 (778)
Q Consensus 541 p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~ 618 (778)
|+...+.-....|.+.|++++|++.|++. .+.| ++.+|..+..++...|+++.|...++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33333444444455555555555555443 2233 244455555555555555555555555555555555555555555
Q ss_pred hhhcCCcchHHHHHHHH
Q 004024 619 YAASGRWGDVSKVRLKM 635 (778)
Q Consensus 619 y~~~g~~~~a~~~~~~m 635 (778)
|...|++++|.+.++..
T Consensus 82 ~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 82 QLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 55555555555554443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=4e-06 Score=75.31 Aligned_cols=90 Identities=13% Similarity=0.042 Sum_probs=76.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCc
Q 004024 548 CMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRW 625 (778)
Q Consensus 548 ~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~ 625 (778)
.....|.+.|++++|+..+++. .+.| +...|..+...+...|+++.|...++++++++|+++.+|..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3455677889999999988876 3455 4778888888999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHh
Q 004024 626 GDVSKVRLKMRD 637 (778)
Q Consensus 626 ~~a~~~~~~m~~ 637 (778)
++|.+.++....
T Consensus 95 ~eA~~~~~~a~~ 106 (159)
T d1a17a_ 95 RAALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.18 E-value=1.1e-06 Score=73.85 Aligned_cols=88 Identities=15% Similarity=0.028 Sum_probs=79.1
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCc
Q 004024 548 CMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRW 625 (778)
Q Consensus 548 ~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~ 625 (778)
.+...+.+.|++++|+..+++. ...|+ +.+|..+..++...|+.+.|+..++++++++|+++.++..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 3566788899999999999887 45564 779999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHH
Q 004024 626 GDVSKVRLKM 635 (778)
Q Consensus 626 ~~a~~~~~~m 635 (778)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988753
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=6e-06 Score=69.75 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=78.5
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 004024 515 SACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKT 591 (778)
Q Consensus 515 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~ 591 (778)
..+...|++++|..+|....+. .| +...|..+..+|...|++++|++.+++. .+.| ++..|..+..++...|++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3455566666666666665542 23 4566777777888888888888887766 3344 577899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHhh
Q 004024 592 ELAEKAAEVIFEMEPENAGMYVLLSNLYA 620 (778)
Q Consensus 592 ~~a~~~~~~~~~l~p~~~~~y~~L~~~y~ 620 (778)
+.|...++++++++|+++.++..+.++-+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 99999999999999999988888877654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.12 E-value=1.2e-05 Score=80.05 Aligned_cols=200 Identities=12% Similarity=-0.005 Sum_probs=134.3
Q ss_pred cccHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHHcCChH
Q 004024 419 LASLELGKQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVD-----KD----VISWNTMIAGYARHGFGK 489 (778)
Q Consensus 419 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~~ 489 (778)
.++++.|..++.. ..+.|..+|++++|.+.|.+..+ .+ ..+|+.+...|.+.|+++
T Consensus 30 ~~~~~~Aa~~y~~---------------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~ 94 (290)
T d1qqea_ 30 SYKFEEAADLCVQ---------------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (290)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHH---------------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcH
Confidence 3456666666554 46679999999999999988744 22 357889999999999999
Q ss_pred HHHHHHHHHHHCCC---CCC--hhHHHHHHHHH-hccCcHHHHHHHHHHchhhcCC---CC-ChHHHHHHHHHHhhcCCH
Q 004024 490 DALMLFESMKTVGI---KPD--DITMVGILSAC-SHTGLVEKGTEYFYSMNRDYGV---IP-NSKHYTCMVDLLGRAGRL 559 (778)
Q Consensus 490 ~Al~l~~~m~~~g~---~pd--~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~---~p-~~~~y~~lv~~l~r~g~~ 559 (778)
+|++.+++..+.-. .+. ..++..+...| ...|++++|.+++.....-+.. .+ ...+|..+...|.+.|++
T Consensus 95 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y 174 (290)
T d1qqea_ 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChH
Confidence 99999998765211 111 23455566666 4469999999999887543221 22 144577889999999999
Q ss_pred HHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch-----HHHHHHHhhh--cC
Q 004024 560 DEAQNLMKNM----PFEPD-----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGM-----YVLLSNLYAA--SG 623 (778)
Q Consensus 560 ~eA~~~~~~m----~~~p~-----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~-----y~~L~~~y~~--~g 623 (778)
++|.+.+++. +..+. ...|..++-.+...|+.+.|...+++..+++|..+.. ...|+..|.. .+
T Consensus 175 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e 254 (290)
T d1qqea_ 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (290)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHH
Confidence 9999999876 11111 1233444556667899999999999999999864432 2344445444 34
Q ss_pred CcchHHHHHH
Q 004024 624 RWGDVSKVRL 633 (778)
Q Consensus 624 ~~~~a~~~~~ 633 (778)
++++|.+.++
T Consensus 255 ~~~eai~~y~ 264 (290)
T d1qqea_ 255 QLSEHCKEFD 264 (290)
T ss_dssp THHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 5667766654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=8.2e-06 Score=75.73 Aligned_cols=87 Identities=14% Similarity=0.019 Sum_probs=80.1
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHH
Q 004024 550 VDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVS 629 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~ 629 (778)
...+...|++++|++.++++. +|++.+|..+..++...|+++.|+..++++++++|+++..|..++.+|...|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 455678999999999999984 6788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 004024 630 KVRLKMRD 637 (778)
Q Consensus 630 ~~~~~m~~ 637 (778)
+.++...+
T Consensus 91 ~~~~kAl~ 98 (192)
T d1hh8a_ 91 KDLKEALI 98 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=1.1e-05 Score=72.34 Aligned_cols=90 Identities=10% Similarity=0.006 Sum_probs=65.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
+...|..+..+|...|++++|.+.+++. .+.|+ ..+|..+..++...|+++.|...++++++++|+++..+..+..+.
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 43 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3445556666666666777776666655 34554 568999999999999999999999999999999988887776654
Q ss_pred h--hcCCcchHHHH
Q 004024 620 A--ASGRWGDVSKV 631 (778)
Q Consensus 620 ~--~~g~~~~a~~~ 631 (778)
. ..+.++++...
T Consensus 123 ~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 123 KIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 3 34445555543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=2.3e-05 Score=70.99 Aligned_cols=61 Identities=10% Similarity=-0.079 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 577 TWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 577 ~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+|..+..+|...|+++.|+..++++++++|+++.+|..++.+|...|++++|...++...+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4566667778888888888888888888888888888888888888888888888887765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.05 E-value=3.2e-05 Score=76.82 Aligned_cols=165 Identities=7% Similarity=-0.082 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHH-cCChHHHHHHHHHHHH----CCCCCC-
Q 004024 442 FVGNALLVMYCKCGSVEEAYHAFEEIVD-----KD----VISWNTMIAGYAR-HGFGKDALMLFESMKT----VGIKPD- 506 (778)
Q Consensus 442 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~-~g~~~~Al~l~~~m~~----~g~~pd- 506 (778)
.++..+..+|.+.|++++|.+.+++..+ .+ ..++..+...|.. .|++++|++.+++..+ .+-.+.
T Consensus 78 ~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~ 157 (290)
T d1qqea_ 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 3556667777778888887777776533 11 3345556666644 5888888888887654 121121
Q ss_pred hhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC------
Q 004024 507 DITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN-----SKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD------ 574 (778)
Q Consensus 507 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~------ 574 (778)
..++..+...+...|++++|.++|+.+.....-.|. ...|..++..+...|+++.|.+.+++. .+.|+
T Consensus 158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre 237 (290)
T d1qqea_ 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred hhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHH
Confidence 234666777888888888888888887654222221 123445555666788999999888887 33332
Q ss_pred HHHHHHHHHHHHHc--CChHHHHHHHHHHHhcCC
Q 004024 575 AATWGALLGACRLY--GKTELAEKAAEVIFEMEP 606 (778)
Q Consensus 575 ~~~~~~Ll~a~~~~--g~~~~a~~~~~~~~~l~p 606 (778)
......|+.++... +.++.|...++++.+++|
T Consensus 238 ~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 22345566665442 235566666655555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.02 E-value=6.9e-06 Score=76.59 Aligned_cols=111 Identities=6% Similarity=-0.145 Sum_probs=68.4
Q ss_pred ChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 004024 506 DDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALL 582 (778)
Q Consensus 506 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll 582 (778)
+...+......+...|++++|+..|...... .| +...|..+..+|.+.|++++|++.+++. .+.|+ ..+|..+.
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 3333444444455555555555555544432 22 3455666666677777777777776655 45664 55777788
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 583 GACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 583 ~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
.++...|+++.|...++++++++|++...+..+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 8888888888888888888888876655544443333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=1e-05 Score=68.60 Aligned_cols=105 Identities=15% Similarity=-0.019 Sum_probs=78.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 004024 512 GILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRL---DEAQNLMKNM-PFEPDA---ATWGALLG 583 (778)
Q Consensus 512 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~---~eA~~~~~~m-~~~p~~---~~~~~Ll~ 583 (778)
.+++.+...+++++|.+.|+...+. .| ++.++..+..+|.+.++. ++|+++++++ ...|++ .+|..|..
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 4566666777777777777776642 33 556777777777765554 4688888876 344543 37888999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 584 ACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 584 a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
+|...|+++.|++.++++++++|++..+..++..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999987777766554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.94 E-value=5.2e-05 Score=67.16 Aligned_cols=83 Identities=16% Similarity=0.023 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCccCCceeEEEeCCEE
Q 004024 576 ATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVKKVTGYSWLEVQNKV 655 (778)
Q Consensus 576 ~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~ 655 (778)
.+|..+..++...|+++.|...++++++++|.++.+|..++.+|...|++++|...++...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l----------------- 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL----------------- 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-----------------
Confidence 356778888889999999999999999999999999999999999999999999998877652
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 004024 656 HTFSVGDTLHPEKDRIYAYLEELEFKLKQ 684 (778)
Q Consensus 656 ~~f~~~d~~hp~~~~i~~~l~~l~~~~~~ 684 (778)
.|...++...+..+..+|++
T Consensus 131 ---------~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 131 ---------NPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp ---------STTCHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHHHHHH
Confidence 35556777777777777654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=2.9e-05 Score=66.54 Aligned_cols=91 Identities=14% Similarity=0.097 Sum_probs=75.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch-------HHHHH
Q 004024 546 YTCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGM-------YVLLS 616 (778)
Q Consensus 546 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~-------y~~L~ 616 (778)
+--+.+.+.+.|++++|++.|++. .+.| +..+|..+..++...|+++.|...++++++++|+++.. |..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345677888899999999988776 3455 47789999999999999999999999999999988764 55567
Q ss_pred HHhhhcCCcchHHHHHHHHH
Q 004024 617 NLYAASGRWGDVSKVRLKMR 636 (778)
Q Consensus 617 ~~y~~~g~~~~a~~~~~~m~ 636 (778)
.++...+++++|.+.++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 77888899999999987654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=3e-05 Score=70.21 Aligned_cols=134 Identities=10% Similarity=0.011 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
..+......+.+.|++++|++.|++.+.. -|....+ .+.-......+ ....|..+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~------------~~~~~~~~~~~--------~~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF------------SNEEAQKAQAL--------RLASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC------------CSHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcccc------------chHHHhhhchh--------HHHHHHHHHHH
Confidence 34556667788899999999999888762 2221110 00000111111 12357778888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchH
Q 004024 553 LGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDV 628 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a 628 (778)
|.+.|++++|++.+++. .+.| ++.+|..+..++...|+++.|...++++++++|+++.+...++.++...+...+.
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876 4566 5778999999999999999999999999999999999999999987766555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=9e-06 Score=69.00 Aligned_cols=91 Identities=7% Similarity=-0.093 Sum_probs=75.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCC--CchHHHHHHHh
Q 004024 547 TCMVDLLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRL---YGKTELAEKAAEVIFEMEPEN--AGMYVLLSNLY 619 (778)
Q Consensus 547 ~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~---~g~~~~a~~~~~~~~~l~p~~--~~~y~~L~~~y 619 (778)
..+++.+...+++++|++.+++. ...| ++.++..+..++.. .++.+.|+..++++++.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45777888899999999999987 4455 46788888888765 445668999999999998865 34788999999
Q ss_pred hhcCCcchHHHHHHHHHh
Q 004024 620 AASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 620 ~~~g~~~~a~~~~~~m~~ 637 (778)
...|++++|.+.++.+.+
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 999999999999998876
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.79 E-value=0.00014 Score=65.51 Aligned_cols=61 Identities=7% Similarity=-0.060 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 577 TWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 577 ~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
+|..+..++...|+++.|...++++++++|++..+|..++.+|...|++++|.+.++...+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556667778889999999999999999999999999999999999999999999888765
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.78 E-value=5.6e-05 Score=68.21 Aligned_cols=63 Identities=8% Similarity=-0.035 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 575 AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 575 ~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.++...+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 456777888888899999999999999999999999999999999999999999999887776
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.75 E-value=0.0016 Score=62.82 Aligned_cols=179 Identities=13% Similarity=-0.005 Sum_probs=108.5
Q ss_pred CCHHHHHHHHHhccC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH--hccCcHHHHH
Q 004024 455 GSVEEAYHAFEEIVD-KDVISWNTMIAGYAR----HGFGKDALMLFESMKTVGIKPDDITMVGILSAC--SHTGLVEKGT 527 (778)
Q Consensus 455 g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~--~~~g~~~~a~ 527 (778)
.+...|...+..... .+...+..|...+.. ..+.+.|+..+++....|..+.. ......... ........+.
T Consensus 52 ~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~-~~l~~~~~~~~~~~~~~~~a~ 130 (265)
T d1ouva_ 52 KNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGC-ASLGGIYHDGKVVTRDFKKAV 130 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHCSSSCCCHHHHH
T ss_pred hhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHH-HhhcccccCCCcccchhHHHH
Confidence 355555555555433 244445444444433 34667777777777765532211 111111111 2234456666
Q ss_pred HHHHHchhhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHH
Q 004024 528 EYFYSMNRDYGVIPNSKHYTCMVDLLGR----AGRLDEAQNLMKNMPFEPDAATWGALLGACRL----YGKTELAEKAAE 599 (778)
Q Consensus 528 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~----~g~~~~a~~~~~ 599 (778)
..+...... .+...+..|...|.. ......+...++...-..++..+..|...+.. ..|.+.|...++
T Consensus 131 ~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~ 206 (265)
T d1ouva_ 131 EYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYS 206 (265)
T ss_dssp HHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHhhhhhcc----cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHh
Confidence 666554432 345556666666654 44566777777665323456666556555544 468999999999
Q ss_pred HHHhcCCCCCchHHHHHHHhhh----cCCcchHHHHHHHHHhCCC
Q 004024 600 VIFEMEPENAGMYVLLSNLYAA----SGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 600 ~~~~l~p~~~~~y~~L~~~y~~----~g~~~~a~~~~~~m~~~g~ 640 (778)
++.+.+ ++..+..|+.+|.. ..+.++|.+.++...+.|-
T Consensus 207 ~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 207 KACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 998874 56788899999986 4489999999998887764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.75 E-value=0.0082 Score=59.52 Aligned_cols=285 Identities=11% Similarity=0.075 Sum_probs=124.0
Q ss_pred HHHHHHHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHHhcccCCcchHHHHHHHHHhcCCHHHHHH
Q 004024 127 NVMISGYVRNKSLSAARNLFEMMPKRDVVSWNTMLSGYAQNGYADAARRIFDRMLEKNEISWNGLLAAYVQNGRIEEACM 206 (778)
Q Consensus 127 ~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~t~~~ll~~~~~~g~~~~a~~ 206 (778)
..+..-|.+.|.++.|..+|..+. -|..++..|.+.+++..|.+++... .+..+|..+..+|.+......+.-
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~e~~la~i 90 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQM 90 (336)
T ss_dssp -----------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCcHHHHHHH
Confidence 334444445555555555554432 2344445555555555555554433 234455555555555554433311
Q ss_pred HHHhcccCCccHhhHHHHHHHhcCChhHHHHHHhhCC---CCChhHHHHHHHHHhcCCCHHHHHHHHhhCCCCCeehHHH
Q 004024 207 LFESKANWEVVSWNSLMGGFVKQKRLGDAKWIFDRMP---VRDEVSWNTMITGYAQNNYLAEAQRLFEEAPVKDVFTWTA 283 (778)
Q Consensus 207 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~ 283 (778)
.......+......++..|-..|.+++...+++... ..+...++-++..|++.+. ++-.+.+.... +.....-
T Consensus 91 -~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s--~~y~~~k 166 (336)
T d1b89a_ 91 -CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMREHLELFW--SRVNIPK 166 (336)
T ss_dssp -TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHS--TTSCHHH
T ss_pred -HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HHHHHHHHhcc--ccCCHHH
Confidence 111111222233445555555566665555555432 3455567777777777643 33333333221 2233344
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCcchHHHHHHHHhccCChHHHHHHHHhhccccccHHHHHHHHHHhcCChhHHHHHh
Q 004024 284 MVSGYVQNGKVDEARMIFDAMPEKNTVSWNAMIAGYVQTKRMDMARELFEAMTCKNVASWNTMITGYAQSGEITHARNLF 363 (778)
Q Consensus 284 li~~~~~~g~~~~A~~l~~~m~~~~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f 363 (778)
++..|-+.+.+.++.-++.++...+... ..++.-....-+.+..++++.. ..|+..+-..+..|..+
T Consensus 167 ~~~~c~~~~l~~elv~Ly~~~~~~~~A~-~~~i~~~~~~~~~~~f~e~~~k--~~N~e~~~~~i~~yL~~---------- 233 (336)
T d1b89a_ 167 VLRAAEQAHLWAELVFLYDKYEEYDNAI-ITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEF---------- 233 (336)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTCHHHHH-HHHHHSTTTTCCHHHHHHHHHH--CSSTHHHHHHHHHHHHH----------
T ss_pred HHHHHHHcCChHHHHHHHHhcCCHHHHH-HHHHHcchhhhhHHHHHHHHHc--cCChHHHHHHHHHHHHc----------
Confidence 5555555555555555555543321100 0011100001111111111111 12223333333333322
Q ss_pred hhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHHcCCCCchhH
Q 004024 364 DRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVKVGFEAGCFV 443 (778)
Q Consensus 364 ~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 443 (778)
++..-+.++......-++.+.++.|++ .+.+...+..+..+...| +..+
T Consensus 234 ------~p~~i~~lL~~v~~~~d~~r~V~~~~k----------------------~~~l~li~p~Le~v~~~n---~~~v 282 (336)
T d1b89a_ 234 ------KPLLLNDLLMVLSPRLDHTRAVNYFSK----------------------VKQLPLVKPYLRSVQNHN---NKSV 282 (336)
T ss_dssp ------CGGGHHHHHHHHGGGCCHHHHHHHHHH----------------------TTCTTTTHHHHHHHHTTC---CHHH
T ss_pred ------CHHHHHHHHHHhccCCCHHHHHHHHHh----------------------cCCcHHHHHHHHHHHHcC---hHHH
Confidence 122234444444444455555554432 223333444555544434 4568
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh
Q 004024 444 GNALLVMYCKCGSVEEAYHAFEE 466 (778)
Q Consensus 444 ~~~Li~~y~k~g~~~~A~~~f~~ 466 (778)
.++|.+.|...++++.-++..+.
T Consensus 283 n~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 283 NESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcchhHHHHHHHHH
Confidence 99999999999997665555544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.69 E-value=0.005 Score=61.16 Aligned_cols=121 Identities=13% Similarity=0.190 Sum_probs=63.8
Q ss_pred HhhcCCchhhhHhhhhCCCCChhhHHHHHHHHHhCCCchHHHHHHhhCCCCCcchHHHHHHHHHcCCChhHHHHHHhhCC
Q 004024 71 HMRNGCCDSALHVFNSMPRRSSVSYNAMISGYLLNGQLDPARQVFDQMPQRDLVSWNVMISGYVRNKSLSAARNLFEMMP 150 (778)
Q Consensus 71 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 150 (778)
+.+.|.++.|..++..+. -|..++..|.+.+++..|.+++.+.. +..+|..+...+.+.....-|.-. ....
T Consensus 24 c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~la~i~-~~~~ 95 (336)
T d1b89a_ 24 CYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMC-GLHI 95 (336)
T ss_dssp -----CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHT-TTTT
T ss_pred HHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHHHHHHH-HHHh
Confidence 336666666666655433 25566666666677776666665543 344666666666665544433221 1111
Q ss_pred CCCcchHHHHHHHHHcCCChHHHHHHHHhcc---cCCcchHHHHHHHHHhcC
Q 004024 151 KRDVVSWNTMLSGYAQNGYADAARRIFDRML---EKNEISWNGLLAAYVQNG 199 (778)
Q Consensus 151 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~t~~~ll~~~~~~g 199 (778)
..++.....++..|-..|.+++...+++... ..+...++-++..|++.+
T Consensus 96 ~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 96 VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 2233333456666666677776666666543 234445566666666543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.69 E-value=0.0001 Score=66.49 Aligned_cols=81 Identities=9% Similarity=-0.028 Sum_probs=70.2
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 542 NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 542 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
....|..+..+|.+.|++++|+..+++. .+.|+ +.+|..+..++...|+++.|...++++++++|+++.++..|..++
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3556777888999999999999998877 56675 679999999999999999999999999999999998888888776
Q ss_pred hhc
Q 004024 620 AAS 622 (778)
Q Consensus 620 ~~~ 622 (778)
...
T Consensus 156 ~~l 158 (169)
T d1ihga1 156 QKI 158 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.59 E-value=0.00021 Score=64.20 Aligned_cols=141 Identities=13% Similarity=0.050 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDL 552 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 552 (778)
..+......+...|++++|+..|++.+.. .|... +...+-......+ ....|..+...
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~~~------------~~~~~~~~~~~~~--------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEMEY------------GLSEKESKASESF--------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCC------------SCCHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhh------------ccchhhhhhcchh--------HHHHHHhHHHH
Confidence 34555667777888888888888776541 11100 0000000011111 12346667788
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcch-HH
Q 004024 553 LGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGD-VS 629 (778)
Q Consensus 553 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~-a~ 629 (778)
|.+.|++++|+..+++. .+.| +..+|..+..++...|+++.|...++++++++|+++.+...+..+....+...+ ..
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k 153 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 89999999999998876 3445 477899999999999999999999999999999999999999888877665543 34
Q ss_pred HHHHHH
Q 004024 630 KVRLKM 635 (778)
Q Consensus 630 ~~~~~m 635 (778)
++++.|
T Consensus 154 k~~~~~ 159 (168)
T d1kt1a1 154 RTYANM 159 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.49 E-value=0.00045 Score=60.81 Aligned_cols=127 Identities=7% Similarity=-0.062 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHH
Q 004024 472 VISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVD 551 (778)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 551 (778)
...+......+.+.|++.+|+..|++.... -|.... ..-......... .....|..+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~-----------~~~~~~~~~~~~--------~~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEE-----------WDDQILLDKKKN--------IEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTT-----------CCCHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhh-----------hhhHHHHHhhhh--------HHHHHHhhHHH
Confidence 446777788889999999999999998862 221110 000000000000 12346777888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHh
Q 004024 552 LLGRAGRLDEAQNLMKNM-PFEP-DAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLY 619 (778)
Q Consensus 552 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y 619 (778)
.|.+.|++++|++.+++. .+.| +.-+|..+..++...|+++.|...++++++++|+|+.+...+..+.
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999886 5566 4679999999999999999999999999999999988877776554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=1.5e-05 Score=85.96 Aligned_cols=221 Identities=6% Similarity=-0.030 Sum_probs=101.3
Q ss_pred hHHHHHHHHHhhcCcccCcc-cccchHHHhcccccHHHHHHHHHHHHHcCCCCch-hHHHHHHHHHHhcCCHHHHHHHHH
Q 004024 388 EDSLRLFIEMKRYGERLNRS-PFTSVLSTCANLASLELGKQLHGQLVKVGFEAGC-FVGNALLVMYCKCGSVEEAYHAFE 465 (778)
Q Consensus 388 ~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~-~~~~~Li~~y~k~g~~~~A~~~f~ 465 (778)
-+|.+.|++... ++||.. .+..+-.++...++++++ ++.++... |+. ...+....+. + ..+..+.+.++
T Consensus 3 ~eA~q~~~qA~~--l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw-~-~~y~~~ie~~r 73 (497)
T d1ya0a1 3 LQSAQYLRQAEV--LKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW-N-HAFKNQITTLQ 73 (497)
T ss_dssp HHHHHHHHHHHH--HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH-H-HHTHHHHHHHH
T ss_pred HHHHHHHHHHHH--cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH-H-HHHHHHHHHHH
Confidence 378888888876 566644 445555566666666654 55554432 111 1111111111 0 01233444444
Q ss_pred hccC----CChhHHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHHHHHHHHHHchhhcC
Q 004024 466 EIVD----KDVISWNTMIAGY--ARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVEKGTEYFYSMNRDYG 538 (778)
Q Consensus 466 ~m~~----~d~~~~~~li~~~--~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 538 (778)
...+ ++..-......++ ...|.++.|+..+.+..+ +.|+ ...+..+...+...|+.++|...+......
T Consensus 74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-- 149 (497)
T d1ya0a1 74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY-- 149 (497)
T ss_dssp HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHH--
T ss_pred HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--
Confidence 4322 1222111111111 123444555544444333 3443 334555555666666776666655543321
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 004024 539 VIPNSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLS 616 (778)
Q Consensus 539 ~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~ 616 (778)
.| ...+.++.+++...|++++|...+++. .+.|+ ...|+.|...+...|+...|...+.+++.++|..+.++..|.
T Consensus 150 -~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~ 227 (497)
T d1ya0a1 150 -IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227 (497)
T ss_dssp -HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred -CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 11 234566777777777777777777665 44554 457777777777777777777777777777777777777776
Q ss_pred HHhhhcC
Q 004024 617 NLYAASG 623 (778)
Q Consensus 617 ~~y~~~g 623 (778)
.+|.+..
T Consensus 228 ~~~~~~~ 234 (497)
T d1ya0a1 228 KALSKAL 234 (497)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 6665443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.38 E-value=0.00033 Score=63.49 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=79.8
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 004024 514 LSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEAQNLMKNMPFEPDAATWGALLGACRLYGKTEL 593 (778)
Q Consensus 514 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~ 593 (778)
.......|++++|.+.|.....-+.-.+-.. +...........-++. -....|..+..++...|+.+.
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccccccc--------CcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCchH
Confidence 3466778888888888888775432221100 0001111111111111 113568888999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 594 AEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 594 a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
|...++++++++|.+...|..|+.+|...|++++|.+.++.+++
T Consensus 86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.27 E-value=0.00047 Score=56.99 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=43.9
Q ss_pred HHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCcHH
Q 004024 449 VMYCKCGSVEEAYHAFEEIVD--K-DVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPD-DITMVGILSACSHTGLVE 524 (778)
Q Consensus 449 ~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~ 524 (778)
..+.+.|++++|...|++... | ++..|..+...|.+.|++++|+..|++..+ +.|+ ...+..+...+...|+.+
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHCCCHH
Confidence 345555666666666665533 2 345555555666666666666666666555 4443 234444444555555555
Q ss_pred HHHHHHHH
Q 004024 525 KGTEYFYS 532 (778)
Q Consensus 525 ~a~~~~~~ 532 (778)
+|.+.|++
T Consensus 102 ~A~~~l~~ 109 (112)
T d1hxia_ 102 AALASLRA 109 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.00037 Score=74.68 Aligned_cols=259 Identities=10% Similarity=-0.016 Sum_probs=138.9
Q ss_pred HHHHHhhhCCC--CC-eeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccchHHHhcccccHHHHHHHHHHHHH
Q 004024 358 HARNLFDRMPQ--HD-CISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSVLSTCANLASLELGKQLHGQLVK 434 (778)
Q Consensus 358 ~A~~~f~~m~~--~d-~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 434 (778)
+|.+.|++..+ || ..+|..+...|.+.|+.++| |+++.... |+...-..+....- ...+..+.+.+....+
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw-~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW-NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH-HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH-HHHHHHHHHHHHHhcc
Confidence 56677776643 33 46788888889999988887 66665432 22110000000000 0112334444444444
Q ss_pred cCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhH
Q 004024 435 VGFEAGCF--VGNALLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDDIT 509 (778)
Q Consensus 435 ~g~~~~~~--~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t 509 (778)
..-.++.. ....+...+...|.++.|...+..... ++...|+.+...+...|+.++|...+.+... ..| ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~-~~~ 154 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YIC-QHC 154 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHH--HHH-HHH
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC--CCH-HHH
Confidence 33223222 112222233445667777777665533 4566788888888999999999998887654 222 346
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 004024 510 MVGILSACSHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PF-EPDAATWGALLGACR 586 (778)
Q Consensus 510 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-~p~~~~~~~Ll~a~~ 586 (778)
+..+...+...|++++|..+|....+ +.| +...|+.|..++...|+..+|...+.+. .. .|-+.++..|...+.
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 77888899999999999999999875 356 4678999999999999999999988776 32 456888888887766
Q ss_pred HcCChHHHHHHHHHHHhcCCC---CCchHHHHHHHhhhcCCcchHHHHHHHH
Q 004024 587 LYGKTELAEKAAEVIFEMEPE---NAGMYVLLSNLYAASGRWGDVSKVRLKM 635 (778)
Q Consensus 587 ~~g~~~~a~~~~~~~~~l~p~---~~~~y~~L~~~y~~~g~~~~a~~~~~~m 635 (778)
...+...+. ...+. -...++.+..++...+.+++..++.+.+
T Consensus 232 ~~~~~~~~~-------~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 232 KALESRDEV-------KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHTTSCCCC-------CSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred Hhhhhhhhh-------ccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 544321110 00111 1234566666777777788777765544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.00097 Score=56.51 Aligned_cols=86 Identities=10% Similarity=0.058 Sum_probs=49.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--------hHHHHHHH
Q 004024 447 LLVMYCKCGSVEEAYHAFEEIVD---KDVISWNTMIAGYARHGFGKDALMLFESMKTVGIKPDD--------ITMVGILS 515 (778)
Q Consensus 447 Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~--------~t~~~ll~ 515 (778)
+.+.|.+.|++++|...|++..+ .+..+|..+..+|.+.|++++|++.++++++ +.|+. .+|..+..
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHHH
Confidence 45556666777777777766543 3456666667777777777777777776665 23321 13333444
Q ss_pred HHhccCcHHHHHHHHHHch
Q 004024 516 ACSHTGLVEKGTEYFYSMN 534 (778)
Q Consensus 516 a~~~~g~~~~a~~~~~~m~ 534 (778)
.+...+++++|.++|....
T Consensus 88 ~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 4445555555555554443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.08 E-value=0.00022 Score=62.21 Aligned_cols=84 Identities=13% Similarity=0.048 Sum_probs=57.0
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH----------cCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhh
Q 004024 554 GRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRL----------YGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAA 621 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~----------~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~ 621 (778)
-|.+.+++|.+.+++. ...|+ +.+|..+..++.. .+.++.|+..++++++++|+++.+|..++++|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3445556666655554 23343 4455555544442 2456789999999999999999999999999988
Q ss_pred cCC-----------cchHHHHHHHHHh
Q 004024 622 SGR-----------WGDVSKVRLKMRD 637 (778)
Q Consensus 622 ~g~-----------~~~a~~~~~~m~~ 637 (778)
.|+ +++|.+.++...+
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccc
Confidence 775 4566666665554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.06 E-value=0.0002 Score=62.48 Aligned_cols=124 Identities=11% Similarity=0.086 Sum_probs=71.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHH
Q 004024 482 YARHGFGKDALMLFESMKTVGIKPDDI-TMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLD 560 (778)
Q Consensus 482 ~~~~g~~~~Al~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~ 560 (778)
|-+.+.+++|++.|++..+ +.|+.. .+..+..++...+....+.+ ..+.++
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e--------------------------~~~~~~ 58 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISD--------------------------AKQMIQ 58 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHH--------------------------HHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhH--------------------------HHHHHH
Confidence 4455667788888888777 567554 44455445543322211111 112234
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcch
Q 004024 561 EAQNLMKNM-PFEPD-AATWGALLGACRLYG-----------KTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGD 627 (778)
Q Consensus 561 eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g-----------~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~ 627 (778)
+|++.+++. .+.|+ ..+|..+..++...| +++.|...++++++++|++..++..|+... .
T Consensus 59 ~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------k 131 (145)
T d1zu2a1 59 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------K 131 (145)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------T
T ss_pred HHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------H
Confidence 444444433 23343 445555555554432 468899999999999999987777776664 4
Q ss_pred HHHHHHHHHhCCC
Q 004024 628 VSKVRLKMRDRGV 640 (778)
Q Consensus 628 a~~~~~~m~~~g~ 640 (778)
|.++.....++|+
T Consensus 132 a~~~~~e~~k~~~ 144 (145)
T d1zu2a1 132 APQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhc
Confidence 5555555555553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.04 E-value=0.00091 Score=58.94 Aligned_cols=88 Identities=16% Similarity=0.007 Sum_probs=64.4
Q ss_pred HHHHhhcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------
Q 004024 550 VDLLGRAGRLDEAQNLMKNM----PFEPD----------AATWGALLGACRLYGKTELAEKAAEVIFEMEPEN------- 608 (778)
Q Consensus 550 v~~l~r~g~~~eA~~~~~~m----~~~p~----------~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~------- 608 (778)
...+.+.|++++|++.+++. |-.|+ ...|+.+..++...|+++.|...+++.+++.|..
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 34445567777776666554 22222 3567888888889999999999999888765432
Q ss_pred ----CchHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 609 ----AGMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 609 ----~~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
..+|..++.+|...|++++|.+.++...+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22577899999999999999999888764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.00 E-value=0.0054 Score=55.10 Aligned_cols=72 Identities=10% Similarity=0.142 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCcHHHHHHHHHHchh----hcCCCCChHHH
Q 004024 473 ISWNTMIAGYARHGFGKDALMLFESMKTVGIKP-DDITMVGILSACSHTGLVEKGTEYFYSMNR----DYGVIPNSKHY 546 (778)
Q Consensus 473 ~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~y 546 (778)
..|..+...+...|++++|+..++++.+ +.| +...+..++.++...|+.++|++.|+.+.+ +.|+.|..++-
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 4677888899999999999999999988 677 556889999999999999999999988643 46888887653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=96.99 E-value=0.017 Score=55.10 Aligned_cols=225 Identities=10% Similarity=0.032 Sum_probs=101.6
Q ss_pred eehHHHHHHHHHhcCChHHHHHHHHhCCCC-CcchHHHHHHHHhc----cCChHHHHHHHHhhc-cccccHHHHHHHHHH
Q 004024 278 VFTWTAMVSGYVQNGKVDEARMIFDAMPEK-NTVSWNAMIAGYVQ----TKRMDMARELFEAMT-CKNVASWNTMITGYA 351 (778)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~t~~~ll~~~~~----~~~~~~a~~i~~~~~-~~~~~~~~~Li~~y~ 351 (778)
+..|..|...+.+.|++++|++.|++..+. |...+..|...|.. ..+...+...+.... ..+......|...+.
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~ 81 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYY 81 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccc
Confidence 345555666666667777777777666543 44445445544443 345555555555444 222333333333332
Q ss_pred hcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCcccCcccccch-HHHhcccccHHHHHHHHH
Q 004024 352 QSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGERLNRSPFTSV-LSTCANLASLELGKQLHG 430 (778)
Q Consensus 352 k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~l-l~a~~~~~~~~~a~~i~~ 430 (778)
... ....+.+.|+..|++....|.......+... ............+...+.
T Consensus 82 ~~~---------------------------~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~ 134 (265)
T d1ouva_ 82 SGQ---------------------------GVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFT 134 (265)
T ss_dssp HTS---------------------------SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred ccc---------------------------ccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhh
Confidence 210 0122334444444444333321111110000 000111223334444444
Q ss_pred HHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhccC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHC
Q 004024 431 QLVKVGFEAGCFVGNALLVMYCK----CGSVEEAYHAFEEIVD-KDVISWNTMIAGYAR----HGFGKDALMLFESMKTV 501 (778)
Q Consensus 431 ~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~Al~l~~~m~~~ 501 (778)
.....+ +...+..|...|.. ..+...+...++...+ .+..++..+...|.. ..+.++|+..|++..+.
T Consensus 135 ~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~ 211 (265)
T d1ouva_ 135 KACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 211 (265)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred hhhccc---ccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcc
Confidence 433322 33344445555543 3445555555555433 355555555555544 34667777777777665
Q ss_pred CCCCChhHHHHHHHHHhc----cCcHHHHHHHHHHchh
Q 004024 502 GIKPDDITMVGILSACSH----TGLVEKGTEYFYSMNR 535 (778)
Q Consensus 502 g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~ 535 (778)
| +...+..|...+.+ ..+.++|.++|+....
T Consensus 212 g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~ 246 (265)
T d1ouva_ 212 E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 246 (265)
T ss_dssp T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred c---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 5 23333333333332 2255566666665543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.0014 Score=52.16 Aligned_cols=74 Identities=14% Similarity=0.038 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNM----P----FEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLL 615 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m----~----~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L 615 (778)
.+--+...+.+.|++++|.+.+++. | ..++ ..++..|..++...|++++|...++++++++|+++.++..+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3345666677777777777666554 1 1233 56889999999999999999999999999999998887776
Q ss_pred HHH
Q 004024 616 SNL 618 (778)
Q Consensus 616 ~~~ 618 (778)
..+
T Consensus 87 ~~~ 89 (95)
T d1tjca_ 87 KYF 89 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.0043 Score=49.08 Aligned_cols=61 Identities=13% Similarity=-0.064 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC-------chHHHHHHHhhhcCCcchHHHHHHHHHh
Q 004024 577 TWGALLGACRLYGKTELAEKAAEVIFEMEPENA-------GMYVLLSNLYAASGRWGDVSKVRLKMRD 637 (778)
Q Consensus 577 ~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~-------~~y~~L~~~y~~~g~~~~a~~~~~~m~~ 637 (778)
.+-.+...+...|+++.|...+++++++.|.++ .+|..|+++|.+.|++++|.+.++...+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 345677888999999999999999999866543 4688999999999999999999998776
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.58 E-value=0.0025 Score=61.35 Aligned_cols=123 Identities=15% Similarity=0.060 Sum_probs=67.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCC-hHHHHHHHHHHhhcCCHHHH
Q 004024 485 HGFGKDALMLFESMKTVGIKPDD-ITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPN-SKHYTCMVDLLGRAGRLDEA 562 (778)
Q Consensus 485 ~g~~~~Al~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA 562 (778)
.|+.++|++.+++.++ ..|+. ..+..+...++..|++++|.+.|+...+ +.|+ ...+..+..++...+..+++
T Consensus 9 ~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 9 EGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHHH
Confidence 4555555555555555 34433 3445555555555555555555555543 2332 23333344444444444443
Q ss_pred HHHHHhC--CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 004024 563 QNLMKNM--PFEPD-AATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMY 612 (778)
Q Consensus 563 ~~~~~~m--~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y 612 (778)
..-.... ..+|+ ...+......+...|+.+.|...++++.++.|..+..+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 3322221 12332 23334445667788999999999999999999886654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.50 E-value=0.0081 Score=52.46 Aligned_cols=65 Identities=17% Similarity=0.080 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 004024 545 HYTCMVDLLGRAGRLDEAQNLMKNM--------PFEPD-----AATWGALLGACRLYGKTELAEKAAEVIFEMEPENA 609 (778)
Q Consensus 545 ~y~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~-----~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 609 (778)
.|+.+..+|...|++++|.+.+++. ...++ ..+|..+..++...|+++.|...+++++++.|+..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 3445555556666666555554433 12222 22567788899999999999999999999877653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.09 E-value=0.0012 Score=63.80 Aligned_cols=118 Identities=15% Similarity=0.178 Sum_probs=84.1
Q ss_pred hccCcHHHHHHHHHHchhhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHH
Q 004024 518 SHTGLVEKGTEYFYSMNRDYGVIP-NSKHYTCMVDLLGRAGRLDEAQNLMKNM-PFEPD-AATWGALLGACRLYGKTELA 594 (778)
Q Consensus 518 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~Ll~a~~~~g~~~~a 594 (778)
...|++++|+..++...+. .| +...+..+..+|++.|++++|.+.++.. ...|+ ...+..+...+...+..+.+
T Consensus 7 L~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4579999999999998753 45 6789999999999999999999999887 45676 44555555554433333222
Q ss_pred HHHHHHH-HhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhC
Q 004024 595 EKAAEVI-FEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDR 638 (778)
Q Consensus 595 ~~~~~~~-~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~ 638 (778)
....... ...+|++...+...+.++...|+.++|.+.++.+.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2111111 1123444455667788999999999999999888764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.40 E-value=0.8 Score=36.70 Aligned_cols=140 Identities=10% Similarity=0.056 Sum_probs=89.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 004024 483 ARHGFGKDALMLFESMKTVGIKPDDITMVGILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLLGRAGRLDEA 562 (778)
Q Consensus 483 ~~~g~~~~Al~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA 562 (778)
...|..++..++..+.... .+..-|+.++.-....-+-+-..+.++.+-+.|.+.| ++++...
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHHH
Confidence 3456667777777766542 2333455555444444455555555555555444443 3333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHhhhcCCcchHHHHHHHHHhCCCc
Q 004024 563 QNLMKNMPFEPDAATWGALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSNLYAASGRWGDVSKVRLKMRDRGVK 641 (778)
Q Consensus 563 ~~~~~~m~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~~g~~~~a~~~~~~m~~~g~~ 641 (778)
..-+-.+. .+....+--|....++|.-+.-+++++.+++-+.-+|.....++++|-+.|...++-++.+..-++|++
T Consensus 76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 33333332 222333445667778888888889988888877778888999999999999999999999999999885
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.10 E-value=5.1 Score=40.37 Aligned_cols=244 Identities=11% Similarity=0.096 Sum_probs=117.7
Q ss_pred HHHHHhcCChhHHHHHhhhCCCCCeeehhhHHHHHHhcCChhHHHHHHHHHhhcCc-ccCcccccchHHHhcccccHHHH
Q 004024 347 ITGYAQSGEITHARNLFDRMPQHDCISWAAIIAGYAQSGYSEDSLRLFIEMKRYGE-RLNRSPFTSVLSTCANLASLELG 425 (778)
Q Consensus 347 i~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~Al~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~~~~~a 425 (778)
+..+.+.++.......|..-+. +...-.....+..+.|+.++|...+..+...|. .|+ ..
T Consensus 79 l~~L~~~~~w~~~~~~~~~~p~-~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~------------------~c 139 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEKPG-TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN------------------AC 139 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT------------------HH
T ss_pred HHHHHhccCHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch------------------HH
Confidence 4455666666665555543221 222233455556667777777777777665542 122 11
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC---------------------------ChhHHHHH
Q 004024 426 KQLHGQLVKVGFEAGCFVGNALLVMYCKCGSVEEAYHAFEEIVDK---------------------------DVISWNTM 478 (778)
Q Consensus 426 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---------------------------d~~~~~~l 478 (778)
..++....+.|...+ ...-.-++.....|+...|..+...+... +......+
T Consensus 140 ~~l~~~~~~~~~lt~-~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 218 (450)
T d1qsaa1 140 DKLFSVWRASGKQDP-LAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMA 218 (450)
T ss_dssp HHHHHHHHHTTCSCH-HHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHH
Confidence 223333333332222 22222333444445555555555544322 11111122
Q ss_pred HHHHHH--cCChHHHHHHHHHHHHCC-CCCChhH-HH-HHHHHHhccCcHHHHHHHHHHchhhcCCCCChHHHHHHHHHH
Q 004024 479 IAGYAR--HGFGKDALMLFESMKTVG-IKPDDIT-MV-GILSACSHTGLVEKGTEYFYSMNRDYGVIPNSKHYTCMVDLL 553 (778)
Q Consensus 479 i~~~~~--~g~~~~Al~l~~~m~~~g-~~pd~~t-~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 553 (778)
..++.+ ..+.+.|..++....... ..++... .. .+.......+..+.+..++...... + .+.....-.+...
T Consensus 219 ~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~w~~~~a 295 (450)
T d1qsaa1 219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-S--QSTSLIERRVRMA 295 (450)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-C--CCHHHHHHHHHHH
T ss_pred HHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc-c--cchHHHHHHHHHH
Confidence 222222 245666666666655432 2222211 11 1111223345556666666554432 2 2333333344445
Q ss_pred hhcCCHHHHHHHHHhCCCCCCH-HHH-HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 004024 554 GRAGRLDEAQNLMKNMPFEPDA-ATW-GALLGACRLYGKTELAEKAAEVIFEMEPENAGMYVLLSN 617 (778)
Q Consensus 554 ~r~g~~~eA~~~~~~m~~~p~~-~~~-~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~y~~L~~ 617 (778)
.+.+++..+...++.|+..|.. .-| -=+..+....|+.+.|...+..+-. .+ +.|-.|+.
T Consensus 296 l~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~---~fYG~LAa 357 (450)
T d1qsaa1 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR---GFYPMVAA 357 (450)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC---SHHHHHHH
T ss_pred HHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CC---ChHHHHHH
Confidence 5667888888888887644422 222 1234666677888888887777754 22 36666653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.30 E-value=0.47 Score=38.42 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=37.8
Q ss_pred CChHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 004024 541 PNSKHYTCMVDLLGRAG---RLDEAQNLMKNM-PFEP-DA-ATWGALLGACRLYGKTELAEKAAEVIFEMEPENAG 610 (778)
Q Consensus 541 p~~~~y~~lv~~l~r~g---~~~eA~~~~~~m-~~~p-~~-~~~~~Ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 610 (778)
|++.+--....++.++. ++++|+.++++. ...| +. ..|-.|.-+|.+.|+++.|.+.++++++++|+|..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 34444444444455443 344566665554 1123 22 34555556666667777777777777777776643
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=88.03 E-value=2.5 Score=34.35 Aligned_cols=16 Identities=0% Similarity=0.187 Sum_probs=9.2
Q ss_pred ChhHHHHHHHHHhhcC
Q 004024 386 YSEDSLRLFIEMKRYG 401 (778)
Q Consensus 386 ~~~~Al~l~~~m~~~g 401 (778)
+.++|+++|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4556666666655544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.18 E-value=1.8 Score=34.83 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=10.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 004024 549 MVDLLGRAGRLDEAQNLMKNM 569 (778)
Q Consensus 549 lv~~l~r~g~~~eA~~~~~~m 569 (778)
|.-+|.+.|++++|.+.++.+
T Consensus 79 Lav~yyklgdy~~A~~~~~~~ 99 (124)
T d2pqrb1 79 LTIGCYKLGEYSMAKRYVDTL 99 (124)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 334444555555555555444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=86.95 E-value=1.9 Score=35.10 Aligned_cols=50 Identities=12% Similarity=-0.056 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHhhh----cCCcchHHHHHHHHHhCCC
Q 004024 589 GKTELAEKAAEVIFEMEPENAGMYVLLSNLYAA----SGRWGDVSKVRLKMRDRGV 640 (778)
Q Consensus 589 g~~~~a~~~~~~~~~l~p~~~~~y~~L~~~y~~----~g~~~~a~~~~~~m~~~g~ 640 (778)
.|.++|.+.+++..+. .++.....|+.+|.. ..+.++|.++++...+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 3567777777777665 345567777777766 3567777777777776654
|