Citrus Sinensis ID: 004054
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 776 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SGZ5 | 767 | Probable beta-D-xylosidas | yes | no | 0.963 | 0.975 | 0.695 | 0.0 | |
| Q9LXA8 | 792 | Probable beta-D-xylosidas | no | no | 0.972 | 0.953 | 0.518 | 0.0 | |
| Q9LJN4 | 781 | Probable beta-D-xylosidas | no | no | 0.947 | 0.941 | 0.514 | 0.0 | |
| Q94KD8 | 768 | Probable beta-D-xylosidas | no | no | 0.969 | 0.979 | 0.492 | 0.0 | |
| Q9FLG1 | 784 | Beta-D-xylosidase 4 OS=Ar | no | no | 0.967 | 0.957 | 0.514 | 0.0 | |
| Q9LXD6 | 773 | Beta-D-xylosidase 3 OS=Ar | no | no | 0.967 | 0.971 | 0.507 | 0.0 | |
| A5JTQ3 | 774 | Beta-xylosidase/alpha-L-a | N/A | no | 0.970 | 0.972 | 0.485 | 0.0 | |
| Q9FGY1 | 774 | Beta-D-xylosidase 1 OS=Ar | no | no | 0.961 | 0.963 | 0.5 | 0.0 | |
| A5JTQ2 | 774 | Beta-xylosidase/alpha-L-a | N/A | no | 0.978 | 0.980 | 0.474 | 0.0 | |
| B8NYD8 | 776 | Probable exo-1,4-beta-xyl | N/A | no | 0.953 | 0.953 | 0.386 | 1e-137 |
| >sp|Q9SGZ5|BXL7_ARATH Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1102 bits (2850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/756 (69%), Positives = 628/756 (83%), Gaps = 8/756 (1%)
Query: 24 VDSTQPPFSCDPSNPSTETFPFCKTTLPISQRARDLVSRLTLDEKISQLVNSAPAIPRLG 83
V+S PP SCDPSNP+T+ + FC+T LPI +RARDLVSRLT+DEKISQLVN+AP IPRLG
Sbjct: 17 VESAPPPHSCDPSNPTTKLYQFCRTDLPIGKRARDLVSRLTIDEKISQLVNTAPGIPRLG 76
Query: 84 IPAYEWWSEALHGVAGVGKGIFFNGTIRGATSFPQVILTAASFDSYLWYRIGQAIGLEAR 143
+PAYEWWSEALHGVA G GI FNGT++ ATSFPQVILTAASFDSY W+RI Q IG EAR
Sbjct: 77 VPAYEWWSEALHGVAYAGPGIRFNGTVKAATSFPQVILTAASFDSYEWFRIAQVIGKEAR 136
Query: 144 ALYNAGQAIGMTFWAPNINIFRDPRWGRGQETPGEDPLVTGKYAVSYVRGVQGDTFNGGK 203
+YNAGQA GMTFWAPNINIFRDPRWGRGQETPGEDP++TG YAV+YVRG+QGD+F+G K
Sbjct: 137 GVYNAGQANGMTFWAPNINIFRDPRWGRGQETPGEDPMMTGTYAVAYVRGLQGDSFDGRK 196
Query: 204 -LKGKLQASACCKHFTAYDLDNWKGTTRYKFDARVTMQDLADTYQPPFESCVKQGRASGI 262
L LQASACCKHFTAYDLD WKG TRY F+A+V++ DLA+TYQPPF+ C+++GRASGI
Sbjct: 197 TLSNHLQASACCKHFTAYDLDRWKGITRYVFNAQVSLADLAETYQPPFKKCIEEGRASGI 256
Query: 263 MCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDV 322
MCAYNRVNGIPSCAD NLL++TAR QW F GYITSDCDAVSIIYDA+GYAKSPEDAV DV
Sbjct: 257 MCAYNRVNGIPSCADPNLLTRTARGQWAFRGYITSDCDAVSIIYDAQGYAKSPEDAVADV 316
Query: 323 LKAGMDVNCGSFLQKHTKAAVKQKKLPESEIDRALHNLFSVRMRLGLFNGNPTMQPFGKI 382
LKAGMDVNCGS+LQKHTK+A++QKK+ E++IDRAL NLFSVR+RLGLFNG+PT P+G I
Sbjct: 317 LKAGMDVNCGSYLQKHTKSALQQKKVSETDIDRALLNLFSVRIRLGLFNGDPTKLPYGNI 376
Query: 383 GADVVCSPAHQVLALQAAQDGIVLLKNSHGLLPLPKSKSVSLALIGPNANSAKTLLGNYA 442
+ VCSPAHQ LAL AA++GIVLLKN+ LLP K SLA+IGPNA+ KTLLGNYA
Sbjct: 377 SPNEVCSPAHQALALDAARNGIVLLKNNLKLLPFSKRSVSSLAVIGPNAHVVKTLLGNYA 436
Query: 443 GPSCRSITPLQALQNYVENTVYYPGCDTVACSSASIDKAVDIAKGADHVVLMMGLDQTQE 502
GP C+++TPL AL++YV+N VY+ GCD+VACS+A+ID+AV IAK ADHVVL+MGLDQTQE
Sbjct: 437 GPPCKTVTPLDALRSYVKNAVYHQGCDSVACSNAAIDQAVAIAKNADHVVLIMGLDQTQE 496
Query: 503 KEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITFAKYDRNIGSILWAGYP 562
KE+ DRVDL LPG+QQELIT VA AAKKPV+LVL+CGGPVDI+FA + IGSI+WAGYP
Sbjct: 497 KEDFDRVDLSLPGKQQELITSVANAAKKPVVLVLICGGPVDISFAANNNKIGSIIWAGYP 556
Query: 563 GEAGAVALAEVIFGDHNPGGRLPMTWYPQDYIKVPMTDMKMRPQATSGNPGRTYRFYEGK 622
GEAG +A++E+IFGDHNPGGRLP+TWYPQ ++ + MTDM+MR + +G PGRTY+FY+G
Sbjct: 557 GEAGGIAISEIIFGDHNPGGRLPVTWYPQSFVNIQMTDMRMR--SATGYPGRTYKFYKGP 614
Query: 623 EVFPFGCGLSYSKYSYKFKAVSQNKLYLNQSSSTKMVENQDVVHYKSVPELGTEFCETRK 682
+V+ FG GLSYS YSY+FK +++ LYLNQS K N D V Y V E+G E C+ K
Sbjct: 615 KVYEFGHGLSYSAYSYRFKTLAETNLYLNQS---KAQTNSDSVRYTLVSEMGKEGCDVAK 671
Query: 683 FLVTIGVKNHGEMAGKHPVLLFVKPARRGNG--RPIKQLVGFQSVILNAKEKAEIVFELS 740
VT+ V+N GEMAGKHPVL+F + R G R KQLVGF+S++L+ EKAE+ FE+
Sbjct: 672 TKVTVEVENQGEMAGKHPVLMFARHERGGEDGKRAEKQLVGFKSIVLSNGEKAEMEFEIG 731
Query: 741 PCESLSRAREDGLMVIEEGTHFLVVGDEEYPISIFV 776
CE LSRA E G+MV+EEG +FL VGD E P+ + V
Sbjct: 732 LCEHLSRANEFGVMVLEEGKYFLTVGDSELPLIVNV 767
|
Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|Q9LXA8|BXL6_ARATH Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9LJN4|BXL5_ARATH Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q94KD8|BXL2_ARATH Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9FLG1|BXL4_ARATH Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL4 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q9LXD6|BXL3_ARATH Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL3 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|A5JTQ3|XYL2_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia GN=Xyl2 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9FGY1|BXL1_ARATH Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|A5JTQ2|XYL1_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 1 (Fragment) OS=Medicago sativa subsp. varia GN=Xyl1 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|B8NYD8|BXLB_ASPFN Probable exo-1,4-beta-xylosidase bxlB OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=bxlB PE=3 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 776 | ||||||
| 255545664 | 774 | Periplasmic beta-glucosidase precursor, | 0.990 | 0.993 | 0.782 | 0.0 | |
| 224066931 | 773 | predicted protein [Populus trichocarpa] | 0.974 | 0.978 | 0.781 | 0.0 | |
| 224082152 | 745 | predicted protein [Populus trichocarpa] | 0.943 | 0.982 | 0.743 | 0.0 | |
| 225459350 | 774 | PREDICTED: probable beta-D-xylosidase 7- | 0.996 | 0.998 | 0.727 | 0.0 | |
| 224066929 | 742 | predicted protein [Populus trichocarpa] | 0.949 | 0.993 | 0.697 | 0.0 | |
| 358349509 | 776 | Xylan 1 4-beta-xylosidase [Medicago trun | 0.990 | 0.990 | 0.680 | 0.0 | |
| 449465962 | 783 | PREDICTED: probable beta-D-xylosidase 7- | 0.996 | 0.987 | 0.683 | 0.0 | |
| 302141935 | 1411 | unnamed protein product [Vitis vinifera] | 0.923 | 0.508 | 0.715 | 0.0 | |
| 449508468 | 783 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.996 | 0.987 | 0.683 | 0.0 | |
| 15218202 | 767 | putative beta-D-xylosidase 7 [Arabidopsi | 0.963 | 0.975 | 0.695 | 0.0 |
| >gi|255545664|ref|XP_002513892.1| Periplasmic beta-glucosidase precursor, putative [Ricinus communis] gi|223546978|gb|EEF48475.1| Periplasmic beta-glucosidase precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1291 bits (3342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/776 (78%), Positives = 681/776 (87%), Gaps = 7/776 (0%)
Query: 1 MIFHKLSLVFPLLCLCFTSLLTRVDSTQPPFSCDPSNPSTETFPFCKTTLPISQRARDLV 60
+ F +FPLL L ++ ST+PPFSCDPSNPST +F FCKT+LPISQR RDLV
Sbjct: 6 LSFFTFFTIFPLLIL-------QITSTEPPFSCDPSNPSTSSFLFCKTSLPISQRVRDLV 58
Query: 61 SRLTLDEKISQLVNSAPAIPRLGIPAYEWWSEALHGVAGVGKGIFFNGTIRGATSFPQVI 120
SRLTLDEKISQLV+SAP+IPRLGIPAYEWWSEALHGVA VG+GI F G I+ ATSFPQVI
Sbjct: 59 SRLTLDEKISQLVSSAPSIPRLGIPAYEWWSEALHGVANVGRGIHFEGAIKAATSFPQVI 118
Query: 121 LTAASFDSYLWYRIGQAIGLEARALYNAGQAIGMTFWAPNINIFRDPRWGRGQETPGEDP 180
LTAASFD+Y WYRIGQ IG EARA+YNAGQA GMTFWAPNINIFRDPRWGRGQETPGEDP
Sbjct: 119 LTAASFDAYQWYRIGQVIGREARAVYNAGQATGMTFWAPNINIFRDPRWGRGQETPGEDP 178
Query: 181 LVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACCKHFTAYDLDNWKGTTRYKFDARVTMQ 240
LVTGKYAVSYVRGVQGD+F GGKLKG LQASACCKHFTAYDLDNWKG R+ FDARVTMQ
Sbjct: 179 LVTGKYAVSYVRGVQGDSFQGGKLKGHLQASACCKHFTAYDLDNWKGVNRFVFDARVTMQ 238
Query: 241 DLADTYQPPFESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCD 300
DLADTYQPPF+SCV+QG+ASGIMCAYNRVNGIPSCAD NLLS+TAR QW FHGYI SDCD
Sbjct: 239 DLADTYQPPFQSCVQQGKASGIMCAYNRVNGIPSCADFNLLSRTARGQWDFHGYIASDCD 298
Query: 301 AVSIIYDAEGYAKSPEDAVVDVLKAGMDVNCGSFLQKHTKAAVKQKKLPESEIDRALHNL 360
AVSIIYD +GYAKSPEDAVVDVLKAGMDVNCGS+LQKHTKAAV+QKKLPE+ IDRALHNL
Sbjct: 299 AVSIIYDNQGYAKSPEDAVVDVLKAGMDVNCGSYLQKHTKAAVEQKKLPEASIDRALHNL 358
Query: 361 FSVRMRLGLFNGNPTMQPFGKIGADVVCSPAHQVLALQAAQDGIVLLKNSHGLLPLPKSK 420
FSVRMRLGLFNGNPT QPF IG D VCS HQ+LAL+AA++GIVLLKNS LLPL KSK
Sbjct: 359 FSVRMRLGLFNGNPTEQPFSNIGPDQVCSQEHQILALEAARNGIVLLKNSARLLPLQKSK 418
Query: 421 SVSLALIGPNANSAKTLLGNYAGPSCRSITPLQALQNYVENTVYYPGCDTVACSSASIDK 480
+VSLA+IGPNANS +TLLGNYAGP C+++TPLQALQ YV+NT+YY GCDTV CSSASIDK
Sbjct: 419 TVSLAVIGPNANSVQTLLGNYAGPPCKTVTPLQALQYYVKNTIYYSGCDTVKCSSASIDK 478
Query: 481 AVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGG 540
AVDIAKG D VV++MGLDQTQE+EELDR+DLVLPG+QQELIT VA++AK P++LVLL GG
Sbjct: 479 AVDIAKGVDRVVMIMGLDQTQEREELDRLDLVLPGKQQELITNVAKSAKNPIVLVLLSGG 538
Query: 541 PVDITFAKYDRNIGSILWAGYPGEAGAVALAEVIFGDHNPGGRLPMTWYPQDYIKVPMTD 600
PVDI+FAKYD NIGSILWAGYPGEAG +ALAE+IFGDHNPGG+LPMTWYPQ+++KVPMTD
Sbjct: 539 PVDISFAKYDENIGSILWAGYPGEAGGIALAEIIFGDHNPGGKLPMTWYPQEFVKVPMTD 598
Query: 601 MKMRPQATSGNPGRTYRFYEGKEVFPFGCGLSYSKYSYKFKAVSQNKLYLNQSSSTKMVE 660
M+MRP +SG PGRTYRFY+G+ VF FG GLSYSKYSY+ K VSQ KLYLNQSS+ ++++
Sbjct: 599 MRMRPDPSSGYPGRTYRFYKGRNVFEFGYGLSYSKYSYELKYVSQTKLYLNQSSTMRIID 658
Query: 661 NQDVVHYKSVPELGTEFCETRKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLV 720
N D V V +LG EFC+ KF V +GV+N GEMAGKHPVLLF + AR GNGRP +QL+
Sbjct: 659 NSDPVRATLVAQLGAEFCKESKFSVKVGVENQGEMAGKHPVLLFARHARHGNGRPRRQLI 718
Query: 721 GFQSVILNAKEKAEIVFELSPCESLSRAREDGLMVIEEGTHFLVVGDEEYPISIFV 776
GF+SVILNA EKAEI FELSPCE SRA EDGL V+EEGTHFL+VG ++YPIS+ V
Sbjct: 719 GFKSVILNAGEKAEIEFELSPCEHFSRANEDGLRVMEEGTHFLMVGGDKYPISVVV 774
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224066931|ref|XP_002302285.1| predicted protein [Populus trichocarpa] gi|222844011|gb|EEE81558.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224082152|ref|XP_002306583.1| predicted protein [Populus trichocarpa] gi|222856032|gb|EEE93579.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|225459350|ref|XP_002285805.1| PREDICTED: probable beta-D-xylosidase 7-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224066929|ref|XP_002302284.1| predicted protein [Populus trichocarpa] gi|222844010|gb|EEE81557.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|358349509|ref|XP_003638778.1| Xylan 1 4-beta-xylosidase [Medicago truncatula] gi|355504713|gb|AES85916.1| Xylan 1 4-beta-xylosidase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449465962|ref|XP_004150696.1| PREDICTED: probable beta-D-xylosidase 7-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|302141935|emb|CBI19138.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449508468|ref|XP_004163321.1| PREDICTED: LOW QUALITY PROTEIN: probable beta-D-xylosidase 7-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|15218202|ref|NP_177929.1| putative beta-D-xylosidase 7 [Arabidopsis thaliana] gi|259585708|sp|Q9SGZ5.2|BXL7_ARATH RecName: Full=Probable beta-D-xylosidase 7; Short=AtBXL7; Flags: Precursor gi|18086336|gb|AAL57631.1| At1g78060/F28K19_32 [Arabidopsis thaliana] gi|332197942|gb|AEE36063.1| putative beta-D-xylosidase 7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 776 | ||||||
| TAIR|locus:2029391 | 767 | AT1G78060 [Arabidopsis thalian | 0.979 | 0.990 | 0.683 | 4.9e-291 | |
| TAIR|locus:2142434 | 792 | AT5G10560 [Arabidopsis thalian | 0.972 | 0.953 | 0.508 | 3.9e-211 | |
| TAIR|locus:2091236 | 781 | AT3G19620 [Arabidopsis thalian | 0.960 | 0.953 | 0.513 | 1.3e-205 | |
| TAIR|locus:2196060 | 768 | BXL2 "beta-xylosidase 2" [Arab | 0.971 | 0.981 | 0.488 | 1.5e-200 | |
| TAIR|locus:2174809 | 784 | XYL4 "beta-D-xylosidase 4" [Ar | 0.971 | 0.961 | 0.508 | 6.6e-200 | |
| TAIR|locus:2144756 | 773 | BXL3 "AT5G09730" [Arabidopsis | 0.967 | 0.971 | 0.501 | 1.4e-197 | |
| TAIR|locus:2157994 | 774 | BXL1 "beta-xylosidase 1" [Arab | 0.961 | 0.963 | 0.496 | 1.6e-196 | |
| ASPGD|ASPL0000029139 | 763 | bxlB [Emericella nidulans (tax | 0.753 | 0.766 | 0.408 | 3.9e-125 | |
| UNIPROTKB|Q5ATH9 | 763 | bxlB "Exo-1,4-beta-xylosidase | 0.753 | 0.766 | 0.408 | 3.9e-125 | |
| ASPGD|ASPL0000048081 | 803 | xlnD [Emericella nidulans (tax | 0.926 | 0.895 | 0.341 | 6.1e-110 |
| TAIR|locus:2029391 AT1G78060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2795 (988.9 bits), Expect = 4.9e-291, P = 4.9e-291
Identities = 525/768 (68%), Positives = 627/768 (81%)
Query: 12 LLCLCFTSLLTRVDSTQPPFSCDPSNPSTETFPFCKTTLPISQRARDLVSRLTLDEKISQ 71
LL L ++ V+S PP SCDPSNP+T+ + FC+T LPI +RARDLVSRLT+DEKISQ
Sbjct: 5 LLLLLLLFIVHGVESAPPPHSCDPSNPTTKLYQFCRTDLPIGKRARDLVSRLTIDEKISQ 64
Query: 72 LVNSAPAIPRLGIPAYEWWSEALHGVAGVGKGIFFNGTIRGATSFPQVILTAASFDSYLW 131
LVN+AP IPRLG+PAYEWWSEALHGVA G GI FNGT++ ATSFPQVILTAASFDSY W
Sbjct: 65 LVNTAPGIPRLGVPAYEWWSEALHGVAYAGPGIRFNGTVKAATSFPQVILTAASFDSYEW 124
Query: 132 YRIGQAIGLEARALYNAGQAIGMTFWAPNINIFRDPRWGRGQETPGEDPLVTGKYAVSYV 191
+RI Q IG EAR +YNAGQA GMTFWAPNINIFRDPRWGRGQETPGEDP++TG YAV+YV
Sbjct: 125 FRIAQVIGKEARGVYNAGQANGMTFWAPNINIFRDPRWGRGQETPGEDPMMTGTYAVAYV 184
Query: 192 RGVQGDTFNGGK-LKGKLQASACCKHFTAYDLDNWKGTTRYKFDARVTMQDLADTYQPPF 250
RG+QGD+F+G K L LQASACCKHFTAYDLD WKG TRY F+A+V++ DLA+TYQPPF
Sbjct: 185 RGLQGDSFDGRKTLSNHLQASACCKHFTAYDLDRWKGITRYVFNAQVSLADLAETYQPPF 244
Query: 251 ESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEG 310
+ C+++GRASGIMCAYNRVNGIPSCAD NLL++TAR QW F GYITSDCDAVSIIYDA+G
Sbjct: 245 KKCIEEGRASGIMCAYNRVNGIPSCADPNLLTRTARGQWAFRGYITSDCDAVSIIYDAQG 304
Query: 311 YAKSPEDAVVDVLKAGMDVNCGSFLQKHTKAAVKQKKLPESEIDRALHNLFSVRMRLGLF 370
YAKSPEDAV DVLKAGMDVNCGS+LQKHTK+A++QKK+ E++IDRAL NLFSVR+RLGLF
Sbjct: 305 YAKSPEDAVADVLKAGMDVNCGSYLQKHTKSALQQKKVSETDIDRALLNLFSVRIRLGLF 364
Query: 371 NGNPTMQPFGKIGADVVCSPAHQVLALQAAQDGIVLLKNSHGXXXXXXXXXXXXXXIGPN 430
NG+PT P+G I + VCSPAHQ LAL AA++GIVLLKN+ IGPN
Sbjct: 365 NGDPTKLPYGNISPNEVCSPAHQALALDAARNGIVLLKNNLKLLPFSKRSVSSLAVIGPN 424
Query: 431 ANSAKTLLGNYAGPSCRSITPLQALQNYVENTVYYPGCDTVACSSASIDKAVDIAKGADH 490
A+ KTLLGNYAGP C+++TPL AL++YV+N VY+ GCD+VACS+A+ID+AV IAK ADH
Sbjct: 425 AHVVKTLLGNYAGPPCKTVTPLDALRSYVKNAVYHQGCDSVACSNAAIDQAVAIAKNADH 484
Query: 491 VVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITFAKYD 550
VVL+MGLDQTQEKE+ DRVDL LPG+QQELIT VA AAKKPV+LVL+CGGPVDI+FA +
Sbjct: 485 VVLIMGLDQTQEKEDFDRVDLSLPGKQQELITSVANAAKKPVVLVLICGGPVDISFAANN 544
Query: 551 RNIGSILWAGYPGEAGAVALAEVIFGDHNPGGRLPMTWYPQDYIKVPMTDMKMRPQATSG 610
IGSI+WAGYPGEAG +A++E+IFGDHNPGGRLP+TWYPQ ++ + MTDM+MR AT G
Sbjct: 545 NKIGSIIWAGYPGEAGGIAISEIIFGDHNPGGRLPVTWYPQSFVNIQMTDMRMR-SAT-G 602
Query: 611 NPGRTYRFYEGKEVFPFGCGLSYSKYSYKFKAVSQNKLYLNQSSSTKMVENQDVVHYKSV 670
PGRTY+FY+G +V+ FG GLSYS YSY+FK +++ LYLNQS K N D V Y V
Sbjct: 603 YPGRTYKFYKGPKVYEFGHGLSYSAYSYRFKTLAETNLYLNQS---KAQTNSDSVRYTLV 659
Query: 671 PELGTEFCETRKFLVTIGVKNHGEMAGKHPVLLFVKPARRG-NG-RPIKQLVGFQSVILN 728
E+G E C+ K VT+ V+N GEMAGKHPVL+F + R G +G R KQLVGF+S++L+
Sbjct: 660 SEMGKEGCDVAKTKVTVEVENQGEMAGKHPVLMFARHERGGEDGKRAEKQLVGFKSIVLS 719
Query: 729 AKEKAEIVFELSPCESLSRAREDGLMVIEEGTHFLVVGDEEYPISIFV 776
EKAE+ FE+ CE LSRA E G+MV+EEG +FL VGD E P+ + V
Sbjct: 720 NGEKAEMEFEIGLCEHLSRANEFGVMVLEEGKYFLTVGDSELPLIVNV 767
|
|
| TAIR|locus:2142434 AT5G10560 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2091236 AT3G19620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2196060 BXL2 "beta-xylosidase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2174809 XYL4 "beta-D-xylosidase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2144756 BXL3 "AT5G09730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2157994 BXL1 "beta-xylosidase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000029139 bxlB [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5ATH9 bxlB "Exo-1,4-beta-xylosidase bxlB" [Aspergillus nidulans FGSC A4 (taxid:227321)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000048081 xlnD [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q4WFI6 | BXLB_ASPFU | 3, ., 2, ., 1, ., 3, 7 | 0.3955 | 0.9213 | 0.9273 | yes | no |
| A2QA27 | XYND_ASPNC | 3, ., 2, ., 1, ., 3, 7 | 0.3599 | 0.9007 | 0.8694 | yes | no |
| Q5ATH9 | BXLB_EMENI | 3, ., 2, ., 1, ., 3, 7 | 0.3778 | 0.9291 | 0.9449 | yes | no |
| O00089 | XYND_ASPNG | 3, ., 2, ., 1, ., 3, 7 | 0.3599 | 0.9007 | 0.8694 | yes | no |
| Q9SGZ5 | BXL7_ARATH | 3, ., 2, ., 1, ., - | 0.6957 | 0.9639 | 0.9752 | yes | no |
| Q2TYT2 | BXLB_ASPOR | 3, ., 2, ., 1, ., 3, 7 | 0.3875 | 0.9342 | 0.9096 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.2.1.37 | 0.946 |
| 3rd Layer | 3.2.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
|||
 | eugene3.00020870 | hypothetical protein (773 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | grail3.3327000301 | • | 0.470 | ||||||||
 | fgenesh4_pg.C_LG_IX000155 | • | 0.460 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 776 | |||
| PLN03080 | 779 | PLN03080, PLN03080, Probable beta-xylosidase; Prov | 0.0 | |
| PRK15098 | 765 | PRK15098, PRK15098, beta-D-glucoside glucohydrolas | 6e-89 | |
| pfam00933 | 296 | pfam00933, Glyco_hydro_3, Glycosyl hydrolase famil | 5e-69 | |
| pfam01915 | 221 | pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase fam | 6e-61 | |
| COG1472 | 397 | COG1472, BglX, Beta-glucosidase-related glycosidas | 4e-58 | |
| pfam14310 | 71 | pfam14310, Fn3-like, Fibronectin type III-like dom | 2e-10 |
| >gnl|CDD|178629 PLN03080, PLN03080, Probable beta-xylosidase; Provisional | Back alignment and domain information |
|---|
Score = 993 bits (2568), Expect = 0.0
Identities = 420/781 (53%), Positives = 541/781 (69%), Gaps = 16/781 (2%)
Query: 4 HKLSLVFPLLCLCFTSLLTRVDSTQPPFSCDPSNPSTETFPFCKTTLPISQRARDLVSRL 63
+L +F LL L + P F C P P+ +PFC +LPI RAR LVS L
Sbjct: 3 TQLRPLFLLLFLLALGATFKAADAHPQFPCKP--PTFSAYPFCNASLPIPARARSLVSLL 60
Query: 64 TLDEKISQLVNSAPAIPRLGIPAYEWWSEALHGVAGVGKGIFFN-GTIRGATSFPQVILT 122
TLDEKI+QL N+A +PRLGIP YEWWSE+LHG+A G G+ FN G + ATSFPQVIL+
Sbjct: 61 TLDEKIAQLSNTAAGVPRLGIPPYEWWSESLHGLADNGPGVSFNSGPVSAATSFPQVILS 120
Query: 123 AASFDSYLWYRIGQAIGLEARALYNAGQAIGMTFWAPNINIFRDPRWGRGQETPGEDPLV 182
AASF+ LW IG AI +EARA+YNAGQA G+TFWAPNINIFRDPRWGRGQETPGEDP V
Sbjct: 121 AASFNRSLWRAIGSAIAVEARAMYNAGQA-GLTFWAPNINIFRDPRWGRGQETPGEDPAV 179
Query: 183 TGKYAVSYVRGVQGDTFNGGK---LKGKLQASACCKHFTAYDLDNWKGTTRYKFDARVTM 239
Y+V +V+G QG + + GKL SACCKH+TAYDL+ W +RY F+A VT
Sbjct: 180 ASAYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTE 239
Query: 240 QDLADTYQPPFESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDC 299
QD+ DTYQPPF+SC+++G+AS +MC+YN+VNG+P+CA ++LL K AR +WGF GYITSDC
Sbjct: 240 QDMEDTYQPPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDC 298
Query: 300 DAVSIIYDAEGYAKSPEDAVVDVLKAGMDVNCGSFLQKHTKAAVKQKKLPESEIDRALHN 359
DAV+ I++ + Y KSPEDAV DVLKAGMD+NCGS++ +HT++A+++ K+ E +IDRAL N
Sbjct: 299 DAVATIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSAIEKGKVQEEDIDRALFN 358
Query: 360 LFSVRMRLGLFNGNPTMQPFGKIGADVVCSPAHQVLALQAAQDGIVLLKNSHGLLPLPKS 419
LFSV++RLGLF+G+P +GK+G + VC+ H+ LAL+AA+ GIVLLKN LPL KS
Sbjct: 359 LFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKS 418
Query: 420 KSVSLALIGPNANSAKTLLGNYAGPSCRSITPLQALQNYVENTVYYPGCDTVAC-SSASI 478
+ SLA+IGP AN L G+Y G C+ T + LQ YV+ T + GC V+C S
Sbjct: 419 EVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGF 478
Query: 479 DKAVDIAKGADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLC 538
+A+ IAK AD VV++ GLD +QE E+ DRV L+LPG+Q +LI+ VA +KKPV+LVL
Sbjct: 479 GEAIAIAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTG 538
Query: 539 GGPVDITFAKYDRNIGSILWAGYPGEAGAVALAEVIFGDHNPGGRLPMTWYPQDYIKVPM 598
GGPVD++FAK D I SILW GYPGE G ALAE+IFGD+NPGGRLPMTWYP+ + VPM
Sbjct: 539 GGPVDVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWYPESFTAVPM 598
Query: 599 TDMKMRPQATSGNPGRTYRFYEGKEVFPFGCGLSYSKYSYKF----KAVSQNKLYLNQSS 654
TDM MR + G PGRTYRFY G V+ FG GLSY+K+SYK K +S ++ + S
Sbjct: 599 TDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSI 658
Query: 655 STKMVENQ-DVVHYKSVPELGTEFCETRKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNG 713
S K + + D + Y + ++ + CE+ +F V I V N GEM G H V+LF + G
Sbjct: 659 SRKPLLQRRDELDYVQIEDIAS--CESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVVPG 716
Query: 714 RPIKQLVGFQSVILNAKEKAEIVFELSPCESLSRAREDGLMVIEEGTHFLVVGDEEYPIS 773
P KQLVGF V + E + PC+ LS A E+G V+ G H L++GD E+ +S
Sbjct: 717 VPEKQLVGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLS 776
Query: 774 I 774
I
Sbjct: 777 I 777
|
Length = 779 |
| >gnl|CDD|185053 PRK15098, PRK15098, beta-D-glucoside glucohydrolase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216204 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|216783 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224389 COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|222669 pfam14310, Fn3-like, Fibronectin type III-like domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 776 | |||
| PLN03080 | 779 | Probable beta-xylosidase; Provisional | 100.0 | |
| PRK15098 | 765 | beta-D-glucoside glucohydrolase; Provisional | 100.0 | |
| COG1472 | 397 | BglX Beta-glucosidase-related glycosidases [Carboh | 100.0 | |
| PF00933 | 299 | Glyco_hydro_3: Glycosyl hydrolase family 3 N termi | 100.0 | |
| PRK05337 | 337 | beta-hexosaminidase; Provisional | 100.0 | |
| PF01915 | 227 | Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-ter | 100.0 | |
| PF14310 | 71 | Fn3-like: Fibronectin type III-like domain; PDB: 3 | 99.82 | |
| PF07705 | 101 | CARDB: CARDB; InterPro: IPR011635 The APHP (acidic | 96.36 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 95.51 | |
| PF12690 | 82 | BsuPI: Intracellular proteinase inhibitor; InterPr | 95.36 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 91.33 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 88.45 | |
| cd00407 | 101 | Urease_beta Urease beta-subunit; Urease is a nicke | 88.35 | |
| PRK13203 | 102 | ureB urease subunit beta; Reviewed | 87.38 | |
| PRK13202 | 104 | ureB urease subunit beta; Reviewed | 86.73 | |
| TIGR00192 | 101 | urease_beta urease, beta subunit. In a number of s | 86.52 | |
| PRK13201 | 136 | ureB urease subunit beta; Reviewed | 83.33 | |
| PRK13205 | 162 | ureB urease subunit beta; Reviewed | 82.2 | |
| COG0832 | 106 | UreB Urea amidohydrolase (urease) beta subunit [Am | 82.13 | |
| PRK13204 | 159 | ureB urease subunit beta; Reviewed | 81.9 | |
| PF13473 | 104 | Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D | 81.83 | |
| PRK13198 | 158 | ureB urease subunit beta; Reviewed | 80.46 |
| >PLN03080 Probable beta-xylosidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-166 Score=1470.68 Aligned_cols=760 Identities=54% Similarity=0.972 Sum_probs=656.5
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCHHHHHhcccccCCCCCCCCCCchhhhh
Q 004054 12 LLCLCFTSLLTRVDSTQPPFSCDPSNPSTETFPFCKTTLPISQRARDLVSRLTLDEKISQLVNSAPAIPRLGIPAYEWWS 91 (776)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~ll~~MTleEKv~ql~~~~~~~~rlgip~~~~~~ 91 (776)
++.|++.++........++++|++ ++...+||||+++++++|+++||++||||||++||.+.+++++|||||.+.||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~c~~--~~~~~~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~~~~vpRlGIP~~~~~~ 88 (779)
T PLN03080 11 LLFLLALGATFKAADAHPQFPCKP--PTFSAYPFCNASLPIPARARSLVSLLTLDEKIAQLSNTAAGVPRLGIPPYEWWS 88 (779)
T ss_pred HHHHHhcchhcccccCCCCcCCCC--ccccCCCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCCCCCCCcCCCCccceec
Confidence 334444444444445567888865 556679999999999999999999999999999999989999999999998999
Q ss_pred hcccceeccCCccccc-CccCCccccchhhhhhhcCCHHHHHHHHHHHHHHHHHhhhccccccceeeccccccCCCCCCC
Q 004054 92 EALHGVAGVGKGIFFN-GTIRGATSFPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGMTFWAPNINIFRDPRWG 170 (776)
Q Consensus 92 d~~~g~~~~~~g~~~~-~~~~~~t~fP~~~~lgAt~d~~l~~~~g~~~g~E~ra~~~~g~~~Gi~~~aP~vdi~r~p~~g 170 (776)
|++||++..++|+++. |.+.++|.||++|++|||||++|++++|+++|+|+|++++.++. |+++|+|++||.||||||
T Consensus 89 d~~hGv~~~~~g~~~~~g~~~~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~-G~~~~aP~vdi~rdPrwG 167 (779)
T PLN03080 89 ESLHGLADNGPGVSFNSGPVSAATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQA-GLTFWAPNINIFRDPRWG 167 (779)
T ss_pred ccccccccCCCccccccCCCCCceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhcccccc-CcceeecccccccCCCcC
Confidence 9999998888888774 34567899999999999999999999999999999999776655 888899999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCCC---CCCCCCceeeEeeccccccCCCCCCCCcceeeccccCHHHHHhccC
Q 004054 171 RGQETPGEDPLVTGKYAVSYVRGVQGDTFNG---GKLKGKLQASACCKHFTAYDLDNWKGTTRYKFDARVTMQDLADTYQ 247 (776)
Q Consensus 171 r~~esfgeDp~l~~~~a~a~v~GlQ~~g~~~---~~~~~~~~v~a~~KHFpg~g~~~~~~~~~~~~~~~~~~~~l~e~~l 247 (776)
|++|||||||+|+++|+.|||+|+|+.+..+ ..+.++.+|+||+||||||+++.+.++.|...++.+++++|+|+||
T Consensus 168 R~~EtfGEDP~lv~~~a~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~yl 247 (779)
T PLN03080 168 RGQETPGEDPAVASAYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQ 247 (779)
T ss_pred ccccCcCCCHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCccccCCccccCccCccCHHHHHhhhh
Confidence 9999999999999999999999999852100 0001234599999999999988777778888889999999999999
Q ss_pred chHHHHHHcCCccEEEeeccccCCcccccCHHHHHHHHHhhcCCCeEEEcCchhHHhhhcCccccCCHHHHHHHHHHcCC
Q 004054 248 PPFESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGM 327 (776)
Q Consensus 248 ~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~iLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~ 327 (776)
+||+++|++|.+++||||||++||+|||.|++||++ ||+||||+|+|||||++|..+...|++..+.+|++++||+||+
T Consensus 248 ~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~~~~~~~~~~ea~~~Al~AG~ 326 (779)
T PLN03080 248 PPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADVLKAGM 326 (779)
T ss_pred HHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhhcccccCCHHHHHHHHHHcCC
Confidence 999999999988799999999999999999999986 9999999999999999999998888887889999999999999
Q ss_pred CccCcchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCcCCCcccCCHHHHHHHHHHHhhhhhhh
Q 004054 328 DVNCGSFLQKHTKAAVKQKKLPESEIDRALHNLFSVRMRLGLFNGNPTMQPFGKIGADVVCSPAHQVLALQAAQDGIVLL 407 (776)
Q Consensus 328 D~~~~~~~~~~l~~av~~g~i~~~~id~av~Ril~~k~~~Glf~~~p~~~~~~~~~~~~i~~~~~~~la~~~A~esiVLL 407 (776)
||+|...+.+.|.+||++|+|++++||+||+|||++|+++|+|+.+|...+|.++....+.+++|+++|+|+|++|||||
T Consensus 327 Dl~~~~~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLL 406 (779)
T PLN03080 327 DINCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLL 406 (779)
T ss_pred CcccCchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEE
Confidence 99998877789999999999999999999999999999999999544333455555567889999999999999999999
Q ss_pred ccCCCCCCCCCCCCCeEEEEccCCccccccCCccCCCCCccCCHHHHHHhhhcCeeeecCCCCCCCC-cccHHHHHHHhh
Q 004054 408 KNSHGLLPLPKSKSVSLALIGPNANSAKTLLGNYAGPSCRSITPLQALQNYVENTVYYPGCDTVACS-SASIDKAVDIAK 486 (776)
Q Consensus 408 KN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~~g~~~~~~t~~~~l~~~~~~~~~~~g~~~~~~~-~~~~~~a~~~a~ 486 (776)
||++++|||++.+.+||+||||+|+....++|+|++.+++.+|++++|+++..++.|..||....+. +..+++|+++|+
T Consensus 407 KN~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~ 486 (779)
T PLN03080 407 KNDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAK 486 (779)
T ss_pred ecCCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhc
Confidence 9999999999765679999999999988888899998888999999999987778899998755443 356889999999
Q ss_pred cCCEEEEEEecCCcccccccCCCCCCCChHHHHHHHHHHHhcCCCEEEEEeCCCccccccccccCCcceEEeccCCCchh
Q 004054 487 GADHVVLMMGLDQTQEKEELDRVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITFAKYDRNIGSILWAGYPGEAG 566 (776)
Q Consensus 487 ~aD~vIv~~g~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvIvVl~~g~P~~l~~~~~~~~v~AiL~a~~~G~e~ 566 (776)
+||+|||++|.+...++|+.||.+|.||+.|.+||++|++++++|||||+++|+|++|+|+++.++|+||||+|||||++
T Consensus 487 ~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqeg 566 (779)
T PLN03080 487 RADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVG 566 (779)
T ss_pred cCCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccc
Confidence 99999999999988999999999999999999999999987567899999999999999987667899999999999999
Q ss_pred HHHHHHHHhCCCCCCccCceeecCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCceeecceeecc
Q 004054 567 AVALAEVIFGDHNPGGRLPMTWYPQDYIKVPMTDMKMRPQATSGNPGRTYRFYEGKEVFPFGCGLSYSKYSYKFKAVSQN 646 (776)
Q Consensus 567 g~AlAdVL~G~~nPsGkLPvT~~p~~~~~~p~~~~~~~~~~~~~~~g~~Yr~~~~~~~ypFG~GLSYTtF~ys~l~~~~~ 646 (776)
|+|+||||||++|||||||+||||+++.++|++++++++++..+|+|++||||+.+|+||||||||||||+||+++++..
T Consensus 567 G~AiAdvLfG~vnPsGkLPvT~~p~~~~~~P~~~~~~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~~~~~ 646 (779)
T PLN03080 567 GQALAEIIFGDYNPGGRLPMTWYPESFTAVPMTDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKK 646 (779)
T ss_pred hhhhHHHHcCCCCCCCcCeeeecccccccCCccccCcccccccCCCCCCceeCCCCcceeccCCCccceeEecccccccc
Confidence 99999999999999999999999998889999888888777778999999999999999999999999999999875321
Q ss_pred ccccccccc-ccccccc--ccccccccCCCC-ccccccceEEEEEEEEecCCCCCCceEEEEeecCCCCCCCCcccccce
Q 004054 647 KLYLNQSSS-TKMVENQ--DVVHYKSVPELG-TEFCETRKFLVTIGVKNHGEMAGKHPVLLFVKPARRGNGRPIKQLVGF 722 (776)
Q Consensus 647 ~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~vsv~VtNtG~~~G~evvQlY~~~~~~~~~~P~k~L~gF 722 (776)
+++..... ....... ........-.+. .+.|++..++|+|+|||||+|+|+||||||+++|.++..+|+||||||
T Consensus 647 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF 725 (779)
T PLN03080 647 -LSLSRSSVQDSISRKPLLQRRDELDYVQIEDIASCESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGF 725 (779)
T ss_pred -ccccccccccccccccccccccccccccccccccCCCceEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCc
Confidence 11100000 0000000 000000000000 012332369999999999999999999999999988888999999999
Q ss_pred eeEEeCCCCEEEEEEEecCCCCceEEcCCCcEEEeCcEEEEEEecCCCceEEeC
Q 004054 723 QSVILNAKEKAEIVFELSPCESLSRAREDGLMVIEEGTHFLVVGDEEYPISIFV 776 (776)
Q Consensus 723 ~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G~y~i~vG~~s~~~~~~~ 776 (776)
+||.|+|||+++|+|+|++.++|++||++++|++|+|+|+|+||.++|+++|++
T Consensus 726 ~kv~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~~ 779 (779)
T PLN03080 726 DRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779 (779)
T ss_pred EeEeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeCccEEEEEeCCccceEEeC
Confidence 999999999999999999646899999999999999999999999999999985
|
|
| >PRK15098 beta-D-glucoside glucohydrolase; Provisional | Back alignment and domain information |
|---|
| >COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
| >PRK05337 beta-hexosaminidase; Provisional | Back alignment and domain information |
|---|
| >PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3 | Back alignment and domain information |
|---|
| >PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A | Back alignment and domain information |
|---|
| >PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins | Back alignment and domain information |
|---|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
| >PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo | Back alignment and domain information |
|---|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
| >cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide | Back alignment and domain information |
|---|
| >PRK13203 ureB urease subunit beta; Reviewed | Back alignment and domain information |
|---|
| >PRK13202 ureB urease subunit beta; Reviewed | Back alignment and domain information |
|---|
| >TIGR00192 urease_beta urease, beta subunit | Back alignment and domain information |
|---|
| >PRK13201 ureB urease subunit beta; Reviewed | Back alignment and domain information |
|---|
| >PRK13205 ureB urease subunit beta; Reviewed | Back alignment and domain information |
|---|
| >COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK13204 ureB urease subunit beta; Reviewed | Back alignment and domain information |
|---|
| >PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D | Back alignment and domain information |
|---|
| >PRK13198 ureB urease subunit beta; Reviewed | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 776 | ||||
| 2x40_A | 721 | Structure Of Beta-Glucosidase 3b From Thermotoga Ne | 4e-38 | ||
| 4i3g_A | 829 | Crystal Structure Of Desr, A Beta-glucosidase From | 1e-37 | ||
| 4i3g_A | 829 | Crystal Structure Of Desr, A Beta-glucosidase From | 5e-12 | ||
| 2x42_A | 721 | Structure Of Beta-Glucosidase 3b From Thermotoga Ne | 4e-37 | ||
| 1lq2_A | 602 | Crystal Structure Of Barley Beta-D-Glucan Glucohydr | 7e-31 | ||
| 1ex1_A | 605 | Beta-D-Glucan Exohydrolase From Barley Length = 605 | 9e-31 | ||
| 3rrx_A | 822 | Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Bet | 3e-26 | ||
| 3usz_A | 822 | Crystal Structure Of Truncated Exo-1,31,4-Beta-Gluc | 3e-26 | ||
| 3zyz_A | 713 | Crystal Structure Of A Glycoside Hydrolase Family 3 | 1e-23 | ||
| 4i8d_A | 714 | Crystal Structure Of Beta-D-Glucoside Glucohydrolas | 1e-23 | ||
| 3ac0_A | 845 | Crystal Structure Of Beta-Glucosidase From Kluyvero | 9e-21 | ||
| 3ac0_A | 845 | Crystal Structure Of Beta-Glucosidase From Kluyvero | 5e-17 | ||
| 3abz_A | 845 | Crystal Structure Of Se-Met Labeled Beta-Glucosidas | 5e-19 | ||
| 3abz_A | 845 | Crystal Structure Of Se-Met Labeled Beta-Glucosidas | 1e-16 | ||
| 3bmx_A | 642 | Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis | 3e-06 | ||
| 3lk6_A | 616 | Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) Fro | 8e-06 | ||
| 4gyj_A | 648 | Crystal Structure Of Mutant (D318n) Bacillus Subtil | 9e-06 |
| >pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Glycerol Length = 721 | Back alignment and structure |
|
| >pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 | Back alignment and structure |
| >pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 | Back alignment and structure |
| >pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Alpha-D-Glucose Length = 721 | Back alignment and structure |
| >pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole Length = 602 | Back alignment and structure |
| >pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley Length = 605 | Back alignment and structure |
| >pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 | Back alignment and structure |
| >pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 | Back alignment and structure |
| >pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3 Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a Resolution. Length = 713 | Back alignment and structure |
| >pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From Trichoderma Reesei Length = 714 | Back alignment and structure |
| >pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces Marxianus In Complex With Glucose Length = 845 | Back alignment and structure |
| >pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces Marxianus In Complex With Glucose Length = 845 | Back alignment and structure |
| >pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From Kluyveromyces Marxianus Length = 845 | Back alignment and structure |
| >pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From Kluyveromyces Marxianus Length = 845 | Back alignment and structure |
| >pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis Length = 642 | Back alignment and structure |
| >pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From Bacillus Subtilis Length = 616 | Back alignment and structure |
| >pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus Family 3 Glycoside Hydrolase (Nagz) In Complex With Glcnac-Murnac (Space Group P1) Length = 648 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Length = 721 | Back alignment and structure |
|---|
Score = 496 bits (1278), Expect = e-166
Identities = 182/787 (23%), Positives = 306/787 (38%), Gaps = 163/787 (20%)
Query: 54 QRARDLVSRLTLDEKISQL-------------------VNSAPAIPRLGIPAYEWWSEAL 94
++ +++S+LTL+EK+ + +PR+G+PA+ ++
Sbjct: 2 EKVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF-VLADGP 60
Query: 95 HGVAGVGKGIFFNGTIRGATSFPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGM 154
G+ T T+FP I+ A++++ L +G+A+G E R + +
Sbjct: 61 AGLRINPTRENDENTY-YTTAFPVEIMLASTWNRELLEEVGKAMGEEVRE-----YGVDV 114
Query: 155 TFWAPNINIFRDPRWGRGQETPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGKLQASACC 214
AP +NI R+P GR E EDP+++G+ A S+V+GVQ AC
Sbjct: 115 LL-APAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQ-----------GVGACI 162
Query: 215 KHFTAYDLDNWKGTTRYKFDARVTMQDLADTYQPPFESCVKQGRASGIMCAYNRVNGIPS 274
KHF A + + T R D V+ + L + Y FE VK+ + +M AYN++NG
Sbjct: 163 KHFVANNQE----TNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYC 218
Query: 275 CADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDVNCGS- 333
+ LL K R +WGF G++ SD A D V+ LKAG D+
Sbjct: 219 SQNEWLLKKVLREEWGFEGFVMSDWYAG--------------DNPVEQLKAGNDLIMPGK 264
Query: 334 ---------FLQKHTKAAVKQKKLPESEIDRALHNLFSVRMRLGLFNGNPTMQPFGKIGA 384
+ A+K+ KL E +D + N+ V + F +
Sbjct: 265 AYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNAPSFKNYRY--------S 316
Query: 385 DVVCSPAHQVLALQAAQDGIVLLKNSHGLLPLPKSKSVSLALIGPNANSAKTLL-GNYAG 443
+ H +A +A +G+VLL+N LPL ++ + AL G G+
Sbjct: 317 NKPDLEKHAKVAYEAGAEGVVLLRN-EEALPLSENSKI--ALFGTGQIETIKGGTGSGDT 373
Query: 444 PSCRSITPLQALQNYVEN--TVYYPGC-------------------------DTVACSSA 476
+I+ L+ ++ N + +
Sbjct: 374 HPRYAISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFL 433
Query: 477 SIDKAVDIAKGADHVVLMMGLDQTQEKEELDR----VDLVLPGRQQELITRVAE---AAK 529
S + +AK D V+++ E DR D L + +LI V+
Sbjct: 434 SEKEIHKLAKKNDVAVIVISRISG---EGYDRKPVKGDFYLSDDETDLIKTVSREFHEQG 490
Query: 530 KPVILVLLCGGPVDITFAKYDRNIGSILWAGYPGEAGAVALAEVIFGDHNPGGRLPMTWY 589
K VI++L G PV++ + + IL G+ +A+V+ G NP G+LP T+
Sbjct: 491 KKVIVLLNIGSPVEVVSWR--DLVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTTF- 547
Query: 590 PQDYIKVPMTDMKMRPQATSGNPGRT------YRFYEGKEV---FPFGCGLSYSKYSYKF 640
P+DY VP P+ YR+Y+ V + FG GLSY+ + Y
Sbjct: 548 PRDYSDVPSWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFEY-- 605
Query: 641 KAVSQNKLYLNQSSSTKMVENQDVVHYKSVPELGTEFCETRKFLVTIGVKNHGEMAGKHP 700
S + + + + V ++N G AGK
Sbjct: 606 -------------SDLNVSFDGETLR------------------VQYRIENTGGRAGKEV 634
Query: 701 VLLFVKPARRGNGRPIKQLVGFQSV-ILNAKEKAEIVFELSPCESLSRAREDGLMVIEEG 759
+++K + +P ++L F +LN E E+V E+ L+ + V+E G
Sbjct: 635 SQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPV-RDLASFNGEEW-VVEAG 692
Query: 760 THFLVVG 766
+ + VG
Sbjct: 693 EYEVRVG 699
|
| >3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Length = 822 | Back alignment and structure |
|---|
| >1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Length = 602 | Back alignment and structure |
|---|
| >3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 | Back alignment and structure |
|---|
| >3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 | Back alignment and structure |
|---|
| >3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Length = 642 | Back alignment and structure |
|---|
| >3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* Length = 535 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Length = 340 | Back alignment and structure |
|---|
| >3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans} Length = 351 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 776 | |||
| 3abz_A | 845 | Beta-glucosidase I; glycoside hydrolase family3 be | 100.0 | |
| 3zyz_A | 713 | Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.1 | 100.0 | |
| 2x41_A | 721 | Beta-glucosidase; hydrolase, TIM barrel fold, fibr | 100.0 | |
| 1x38_A | 602 | Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai | 100.0 | |
| 3rrx_A | 822 | EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( | 100.0 | |
| 3bmx_A | 642 | Uncharacterized lipoprotein YBBD; beta-N-hexosamin | 100.0 | |
| 3sql_A | 535 | Glycosyl hydrolase family 3; structural genomics, | 100.0 | |
| 3tev_A | 351 | Glycosyl hyrolase, family 3; PSI-biology, midwest | 100.0 | |
| 4g6c_A | 348 | Beta-hexosaminidase 1; ssgcid, niaid, structural g | 100.0 | |
| 4gvf_A | 349 | Beta-hexosaminidase; TIM-barrel, hydrolase; HET: N | 100.0 | |
| 2oxn_A | 340 | Beta-hexosaminidase; TIM-barrel, hydrolase; HET: O | 100.0 | |
| 3idu_A | 127 | Uncharacterized protein; all beta-protein, structu | 96.94 | |
| 2l0d_A | 114 | Cell surface protein; structural genomics, northea | 96.32 | |
| 2kut_A | 122 | Uncharacterized protein; structural genomics, PSI- | 95.79 | |
| 3isy_A | 120 | Bsupi, intracellular proteinase inhibitor; intrace | 94.28 | |
| 2x3c_A | 343 | Toxic extracellular endopeptidase; hydrolase; 1.99 | 90.72 | |
| 4ep8_B | 101 | Urease subunit beta; alpha-beta barrel, nickel met | 87.23 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 83.83 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 83.34 | |
| 4ubp_B | 126 | Protein (urease (chain B)); bacillus pasteurii, ni | 83.17 | |
| 4ac7_B | 126 | Urease subunit beta; hydrolase, bacillus pasteurii | 83.17 | |
| 3fsa_A | 125 | Azurin; copper, cupredoxin fold, metal-binding, pr | 81.24 | |
| 1w8o_A | 601 | Bacterial sialidase; 3D-structure, glycosidase, hy | 80.59 |
| >3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-148 Score=1322.09 Aligned_cols=629 Identities=29% Similarity=0.461 Sum_probs=549.6
Q ss_pred HHHHHHHHhcCCHHHHHhcccc----cCCCCCCCCCCchhhhhhcccceeccCCcccccCccCCccccchhhhhhhcCCH
Q 004054 53 SQRARDLVSRLTLDEKISQLVN----SAPAIPRLGIPAYEWWSEALHGVAGVGKGIFFNGTIRGATSFPQVILTAASFDS 128 (776)
Q Consensus 53 ~~r~~~ll~~MTleEKv~ql~~----~~~~~~rlgip~~~~~~d~~~g~~~~~~g~~~~~~~~~~t~fP~~~~lgAt~d~ 128 (776)
+.|+++||++||||||++||.+ ...+++|+|||.+ +++|++||++. .++.+. .++|.||+++++|||||+
T Consensus 3 ~~r~~~ll~~mTleEKi~~l~g~~~~~~~~~~rlgiP~l-~~~D~~~G~~~----~~~~~~-~~~t~fP~~~~laat~d~ 76 (845)
T 3abz_A 3 KFDVEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAV-RVSDGPNGIRG----TKFFDG-VPSGCFPNGTGLASTFDR 76 (845)
T ss_dssp CCCHHHHHHHCCHHHHHHHTBCSSSSBCCCBGGGTBCCC-BEEECTTSCCC----SCSTTC-CCBCCCCCHHHHHHTCCH
T ss_pred HHHHHHHHHcCCHHHHHHHhcCCCccccccCcccCCCCE-EEEecCCCeee----eeccCC-CCcCcCcCHHHHHhcCCH
Confidence 4689999999999999999986 4678999999998 68999999862 222110 148999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccee-eccccccCCCCCCCccccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 004054 129 YLWYRIGQAIGLEARALYNAGQAIGMTF-WAPNINIFRDPRWGRGQETPGEDPLVTGKYAVSYVRGVQGDTFNGGKLKGK 207 (776)
Q Consensus 129 ~l~~~~g~~~g~E~ra~~~~g~~~Gi~~-~aP~vdi~r~p~~gr~~esfgeDp~l~~~~a~a~v~GlQ~~g~~~~~~~~~ 207 (776)
+|++++|+++|+|+|++ |+|+ |+|++||.|||+|||++|+|||||+|+++|+.|+|+|||++|
T Consensus 77 ~l~~~~g~~~g~E~ra~-------Gi~~~laP~vdi~r~P~~gR~~EsfgeDP~lv~~~a~a~v~GlQ~~g--------- 140 (845)
T 3abz_A 77 DLLETAGKLMAKESIAK-------NAAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGEG--------- 140 (845)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCSEEECCBCCCCSSTTCTTGGGSCCSSHHHHHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHHHHHHHHc-------CCCEEecceECCCcCCCCCcccccCCCCHHHHHHHHHHHHHHHhhCC---------
Confidence 99999999999999999 9999 999999999999999999999999999999999999999998
Q ss_pred ceeeEeeccccccCCCCCCCCcceeeccccCHHHHHhccCchHHHHHHcCCccEEEeeccccCCcccccCHHHHHHHHHh
Q 004054 208 LQASACCKHFTAYDLDNWKGTTRYKFDARVTMQDLADTYQPPFESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARR 287 (776)
Q Consensus 208 ~~v~a~~KHFpg~g~~~~~~~~~~~~~~~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~iLR~ 287 (776)
|+||+|||||||++. .|...++++++++|+|+||+||+++|+++.+++||||||++||+|||+|+++|++|||+
T Consensus 141 --V~a~~KHFpg~g~e~----~r~~~~~~v~~~~L~e~~L~PF~~ai~~ag~~~VM~syn~ing~pa~~s~~ll~~lLR~ 214 (845)
T 3abz_A 141 --IAATVKHFVCNDLED----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDILRD 214 (845)
T ss_dssp --CBCEEEEETTCCCCT----TTTTCEEECCHHHHHHTTSHHHHHHHHHHCCSEEEECSSEETTEEGGGCHHHHTCCCCC
T ss_pred --eeEEeeccccCCccc----CCccccCCCCHHHHHHhhHHHHHHHHHhcCCCEEEecCCCcCCEeccCCHHHHHHHHhh
Confidence 999999999999643 45566778999999999999999999744456999999999999999999999999999
Q ss_pred hcCCCeEEEcCchhHHhhhcCccccCCHHHHHHHHHHcCCCccCcc---hhH-HHHHHHHHcCC-CCHHHHHHHHHHHHH
Q 004054 288 QWGFHGYITSDCDAVSIIYDAEGYAKSPEDAVVDVLKAGMDVNCGS---FLQ-KHTKAAVKQKK-LPESEIDRALHNLFS 362 (776)
Q Consensus 288 e~gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~---~~~-~~l~~av~~g~-i~~~~id~av~Ril~ 362 (776)
||||+|+|||||+++. ++++|++||+||+|+. ... +.|.+||++|+ |++++||+||+|||+
T Consensus 215 e~GF~G~VvSD~~~~~--------------~~~~Al~AG~D~~m~~~~~~~~~~~l~~av~~G~~i~~~~id~av~RIL~ 280 (845)
T 3abz_A 215 EWKWDGMLMSDWFGTY--------------TTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLK 280 (845)
T ss_dssp CTCCCSEEECCTTCCC--------------CSHHHHHHTCCBBCSSSCSSCCHHHHHHHHHTTCSCCHHHHHHHHHHHHH
T ss_pred ccCCCeEEEcccccHH--------------HHHHHHHcCCCcccCCchhhhHHHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 9999999999998652 2478999999999962 222 48999999999 999999999999999
Q ss_pred HHHHhc----ccCCCCCCCCCCcCCCcccCCHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCeEEEEccCCccccccC
Q 004054 363 VRMRLG----LFNGNPTMQPFGKIGADVVCSPAHQVLALQAAQDGIVLLKNSHGLLPLPKSKSVSLALIGPNANSAKTLL 438 (776)
Q Consensus 363 ~k~~~G----lf~~~p~~~~~~~~~~~~i~~~~~~~la~~~A~esiVLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~ 438 (776)
+|+++| +|+ +|. .......+++++|+++++++|+||||||||++++|||++ .+||+||||+|+....++
T Consensus 281 ~k~~~g~l~~~~~-~p~----~~~~~~~~~~~~~~~la~~~a~~sivLLKN~~~~LPL~~--~~~iaviGp~A~~~~~~G 353 (845)
T 3abz_A 281 MIKFVVDNLEKTG-IVE----NGPESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKK--EDNIIVIGPNAKAKTSSG 353 (845)
T ss_dssp HHHHHHHTHHHHC-CCT----TCCCCCTTCSHHHHHHHHHHHHHHCEEEEECTTCCSCCT--TSCEEEESTTTSCCCCSC
T ss_pred HHHHhCCcccccc-CCc----cCccccccCCHHHHHHHHHHHHhCcEEeccCCcccCCCC--CCEEEEEcCCcchhhccC
Confidence 999999 998 442 221222378999999999999999999999999999986 479999999999987666
Q ss_pred CccCCC-CCccCCHHHHHHhhhc-CeeeecCCCCC------------------------------------C--------
Q 004054 439 GNYAGP-SCRSITPLQALQNYVE-NTVYYPGCDTV------------------------------------A-------- 472 (776)
Q Consensus 439 G~~~g~-~~~~~t~~~~l~~~~~-~~~~~~g~~~~------------------------------------~-------- 472 (776)
|+|+.. +.+.+||++||++++. .+.|..||... .
T Consensus 354 ggs~~~~~~~~vtpl~gi~~~~~~~v~y~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~ 433 (845)
T 3abz_A 354 GGSASMNSYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPADAENSGLIAKFYSNPVEERSDDEEPFH 433 (845)
T ss_dssp BSTTCCCBSCCCCHHHHHHHHHTSCCEEECCCCCCSSCCBSGGGEESSTTSCSCTTTBSEEEEEESSCTTTSCTTCCCSE
T ss_pred CCccCcccCCcCCHHHHHHHhhcCceeeccccccccccccccccccccccccccCCCCceEEEEeccCcccCccccccee
Confidence 666543 5678999999998753 25555544200 0
Q ss_pred --------------------------------------------------------------------------------
Q 004054 473 -------------------------------------------------------------------------------- 472 (776)
Q Consensus 473 -------------------------------------------------------------------------------- 472 (776)
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~l~idg~~v~~~~~~~~~~~~~~~~~~~ 513 (845)
T 3abz_A 434 VTKVNRSNVHLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGSGLFYLNDELIIDQKHNQERGSFCFGAGTK 513 (845)
T ss_dssp EEEECSSEEECTTCCCTTSBTTBCCCEEEEEEEECCSSSEEEEEEEEEESEEEEEETTEEEEEESSSCCBCSTTTTTSBC
T ss_pred eeeccccceeecccccccccccccceeEEEEEEEecCCCccEEEEEeecCceEEEECCEEEeeccccccccccccccCcc
Confidence
Q ss_pred --------------------------------------------CC-cccHHHHHHHhhcCCEEEEEEecCCcccccccC
Q 004054 473 --------------------------------------------CS-SASIDKAVDIAKGADHVVLMMGLDQTQEKEELD 507 (776)
Q Consensus 473 --------------------------------------------~~-~~~~~~a~~~a~~aD~vIv~~g~~~~~~~Eg~D 507 (776)
.. ...+++|+++|++||+||||+|++..+|+||.|
T Consensus 514 ~~~~~~~l~~g~~y~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Av~~A~~ADvvVv~vG~~~~~e~Eg~D 593 (845)
T 3abz_A 514 ERTKKLTLKKGQVYNVRVEYGSGPTSGLVGEFGAGGFQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYD 593 (845)
T ss_dssp CEEEEEEECTTCCEEEEEEEECTTTSCCSSCCCCCEEEEEEEECCCHHHHHHHHHHHHHTSSEEEEEEECCTTTSBTTBC
T ss_pred cceeEEEecCCceeeEEEEeccCCcccccccccccceeecccccccchhhHHHHHHHHhcCCEEEEEEecCCccccccCC
Confidence 00 023678899999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCEEEEEeCCCccccccccccCCcceEEeccCCCchhHHHHHHHHhCCCCCCccCcee
Q 004054 508 RVDLVLPGRQQELITRVAEAAKKPVILVLLCGGPVDITFAKYDRNIGSILWAGYPGEAGAVALAEVIFGDHNPGGRLPMT 587 (776)
Q Consensus 508 r~~l~Lp~~q~~Li~~va~~~~~pvIvVl~~g~P~~l~~~~~~~~v~AiL~a~~~G~e~g~AlAdVL~G~~nPsGkLPvT 587 (776)
|.+|.||+.|.+||++|+++ ++|||||+++|+|++|+|++ +++|||++||||||+|+||||||||++|||||||+|
T Consensus 594 R~~l~LP~~Q~~LI~aV~a~-~~~tVVVl~sG~pv~m~w~~---~v~AIL~aw~pGqegG~AiAdVLfG~vNPSGkLP~T 669 (845)
T 3abz_A 594 RENMDLPKRTNELVRAVLKA-NPNTVIVNQSGTPVEFPWLE---DANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLS 669 (845)
T ss_dssp CSSSCCCTTHHHHHHHHHHH-CSCEEEEEECSSCCCCTTGG---GCSEEEECCCCCTTHHHHHHHHHTTSSCCCCCCSSC
T ss_pred cccccCCHHHHHHHHHHHHh-CCCEEEEEeCCCcccCcchh---ccCeEEEcCCCcHHHHHHHHHHhcCCcCCCCCCcee
Confidence 99999999999999999999 89999999999999999884 799999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCC-C-----CCCCCCCCccccCC---CCccccCCCCCCCCCceee--cceeecccccccccccc
Q 004054 588 WYPQDYIKVPMTDMKMRP-Q-----ATSGNPGRTYRFYE---GKEVFPFGCGLSYSKYSYK--FKAVSQNKLYLNQSSST 656 (776)
Q Consensus 588 ~~p~~~~~~p~~~~~~~~-~-----~~~~~~g~~Yr~~~---~~~~ypFG~GLSYTtF~ys--~l~~~~~~~~~~~~~~~ 656 (776)
| |++.+|+|.++ ++.. . .+..|. +||||+ .+|+||||||||||||+|| +++++ .
T Consensus 670 ~-p~~~~d~P~~~-~~~~~~g~~~y~eg~~v--gYR~y~~~~~~plfPFG~GLSYTtF~ys~~~l~v~-~---------- 734 (845)
T 3abz_A 670 W-PFKLQDNPAFL-NFKTEFGRVIYGEDIFV--GYRYYEKLQRKVAFPFGYGLSYTTFELDISDFKVT-D---------- 734 (845)
T ss_dssp B-CSSGGGSTTTT-SCSCBTTEEECTTTTCC--THHHHHHHTCCCSBCTTCCBCSSCEEEEEEEEEEC-S----------
T ss_pred e-eCchhhCCccc-cCCCCCCceeccCCccC--CCcchhcCCCceeecccCCCcceeEEEeccccccc-C----------
Confidence 7 88888999753 2221 1 112233 599996 5799999999999999999 98742 1
Q ss_pred ccccccccccccccCCCCccccccceEEEEEEEEecC-CCCCCceEEEEeecCCCCCCCCcccccceeeEEeCCCCEEEE
Q 004054 657 KMVENQDVVHYKSVPELGTEFCETRKFLVTIGVKNHG-EMAGKHPVLLFVKPARRGNGRPIKQLVGFQSVILNAKEKAEI 735 (776)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vsv~VtNtG-~~~G~evvQlY~~~~~~~~~~P~k~L~gF~kv~L~pGes~~V 735 (776)
+.++|+|+||||| +++|+||||||+++|.+++.+|.||||||+||.|+||||++|
T Consensus 735 ------------------------~~~~v~v~V~NtG~~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V 790 (845)
T 3abz_A 735 ------------------------DKIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTV 790 (845)
T ss_dssp ------------------------SEEEEEEEEEECCSSCCEEEEEEEEEEESSCSSCCCSCEEEEEEEEEECTTCEEEE
T ss_pred ------------------------CeEEEEEEEEECCcCCCcceeeeeeEeCCCCCcchhhheeccceeEEECCCCEEEE
Confidence 4699999999999 999999999999999999999999999999999999999999
Q ss_pred EEEec-CCCCceEEcCC-CcEEEeCcEEEEEEecCCCceEE
Q 004054 736 VFELS-PCESLSRARED-GLMVIEEGTHFLVVGDEEYPISI 774 (776)
Q Consensus 736 ~~~l~-~~~~ls~~d~~-~~~~~e~G~y~i~vG~~s~~~~~ 774 (776)
+|+|+ . ++|++||.. ++|++|+|+|+|+||+||+++.+
T Consensus 791 ~~~l~~~-~~l~~~d~~~~~~~~e~G~y~v~vG~ss~di~l 830 (845)
T 3abz_A 791 NIDLELK-DAISYFNEELGKWHVEAGEYLVSVGTSSDDILS 830 (845)
T ss_dssp EEEEEHH-HHHCEEETTTTEEEECSEEEEEEEESSTTCEEE
T ss_pred EEEeCCh-HHeeEEecCCCeEEEcCCEEEEEEECCCCCcee
Confidence 99999 7 689999996 78999999999999999998864
|
| >3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A* | Back alignment and structure |
|---|
| >2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* | Back alignment and structure |
|---|
| >1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* | Back alignment and structure |
|---|
| >3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A | Back alignment and structure |
|---|
| >3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* | Back alignment and structure |
|---|
| >3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* | Back alignment and structure |
|---|
| >3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >4g6c_A Beta-hexosaminidase 1; ssgcid, niaid, structural genomics, Na institute of allergy and infectious diseases; 1.38A {Burkholderia cenocepacia} PDB: 4gnv_A* | Back alignment and structure |
|---|
| >4gvf_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: NDG NAG MES; 1.35A {Salmonella enterica subsp} PDB: 4gvg_A* 4gvh_A* 4gvi_A* | Back alignment and structure |
|---|
| >2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A | Back alignment and structure |
|---|
| >3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A | Back alignment and structure |
|---|
| >2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans} | Back alignment and structure |
|---|
| >2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis} | Back alignment and structure |
|---|
| >2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A | Back alignment and structure |
|---|
| >4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ... | Back alignment and structure |
|---|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B* | Back alignment and structure |
|---|
| >4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B* | Back alignment and structure |
|---|
| >3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ... | Back alignment and structure |
|---|
| >1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 776 | ||||
| d1x38a1 | 388 | c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-te | 4e-52 | |
| d1x38a2 | 214 | c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, | 2e-28 | |
| d1tr9a_ | 330 | c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio chol | 9e-12 |
| >d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: NagZ-like domain: Beta-D-glucan exohydrolase, N-terminal domain species: Barley (Hordeum vulgare) [TaxId: 4513]
Score = 184 bits (466), Expect = 4e-52
Identities = 99/397 (24%), Positives = 165/397 (41%), Gaps = 55/397 (13%)
Query: 45 FCKTTLPISQRARDLVSRLTLDEKISQLV---------------------NSAPAIPRLG 83
+ T P+ R DL+ R+TL EKI Q+ + ++PR G
Sbjct: 5 YKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKG 64
Query: 84 IPAYEWWSEALHGV----AGVGKGI---------FFNGTIRGATSFPQVILTAASFDSYL 130
A EW + + G GI + GAT FP + A+ D YL
Sbjct: 65 ATAKEWQ-DMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYL 123
Query: 131 WYRIGQAIGLEARALYNAGQAIGMTFWAPNINIFRDPRWGRGQETPGEDPLVTGKYA--V 188
RIG+A LE RA +AP I + RDPRWGR E+ ED + +
Sbjct: 124 VKRIGEATALEVRATGI------QYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELI 177
Query: 189 SYVRGVQGDTFNGG--KLKGKLQASACCKHFTAYDLDNWKGTTRYKFDARVTMQDLADTY 246
++G F G + GK + +AC KHF + + + + L + +
Sbjct: 178 PGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGD---GGTVDGINENNTIINREGLMNIH 234
Query: 247 QPPFESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIY 306
P +++ + +G ++ +M +Y+ NG+ A+++L++ + F G++ SD + + I
Sbjct: 235 MPAYKNAMDKGVST-VMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRIT 293
Query: 307 D--AEGYAKSPEDAVVDVLKAGMDVNCGSFLQKHTKAAVKQKKLPESEIDRALHNLFSVR 364
Y+ S + +++ L M N V +P S ID A+ + V+
Sbjct: 294 TPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVK 353
Query: 365 MRLGLFNGNPTMQPFGKIGADVVCSPAHQVLALQAAQ 401
+GLF NP P A+ + H+ LA +AA+
Sbjct: 354 FTMGLFE-NPYADPA---MAEQLGKQEHRDLAREAAR 386
|
| >d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 214 | Back information, alignment and structure |
|---|
| >d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Length = 330 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 776 | |||
| d1x38a1 | 388 | Beta-D-glucan exohydrolase, N-terminal domain {Bar | 100.0 | |
| d1tr9a_ | 330 | Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: | 100.0 | |
| d1x38a2 | 214 | Beta-D-glucan exohydrolase, C-terminal domain {Bar | 100.0 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.57 | |
| d2q3za2 | 114 | Transglutaminase, two C-terminal domains {Human (H | 89.17 | |
| d1ejxb_ | 101 | Urease, beta-subunit {Klebsiella aerogenes [TaxId: | 87.83 | |
| d1vjja2 | 115 | Transglutaminase, two C-terminal domains {Human (H | 87.82 | |
| d2vzsa2 | 122 | Exochitosanase CsxA, domains 2, 4 and 5 {Amycolato | 87.8 | |
| d1g0da2 | 112 | Transglutaminase, two C-terminal domains {Red sea | 87.15 | |
| d1ex0a2 | 112 | Transglutaminase, two C-terminal domains {Human (H | 85.86 | |
| d4ubpb_ | 122 | Urease, beta-subunit {Bacillus pasteurii [TaxId: 1 | 85.83 | |
| d1e9ya1 | 133 | Urease, beta-subunit {Helicobacter pylori [TaxId: | 81.21 |
| >d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: NagZ-like domain: Beta-D-glucan exohydrolase, N-terminal domain species: Barley (Hordeum vulgare) [TaxId: 4513]
Probab=100.00 E-value=1.5e-70 Score=608.34 Aligned_cols=332 Identities=30% Similarity=0.493 Sum_probs=275.8
Q ss_pred CC-CCCCCCChHHHHHHHHhcCCHHHHHhccccc---------------------CCCCC--------------------
Q 004054 43 FP-FCKTTLPISQRARDLVSRLTLDEKISQLVNS---------------------APAIP-------------------- 80 (776)
Q Consensus 43 ~~-~~d~~~~~~~r~~~ll~~MTleEKv~ql~~~---------------------~~~~~-------------------- 80 (776)
.| |+||++|+++||++||++|||||||+||++. ...++
T Consensus 2 ~~~y~d~~~~~e~Rv~dLl~~MTleEKigQl~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~ 81 (388)
T d1x38a1 2 YVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKGATAKEWQDMVDGFQKAC 81 (388)
T ss_dssp CCGGGCTTSCHHHHHHHHHTTCCHHHHHHHTEEEEGGGCCHHHHHHTTCCEEEECTTCCSSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHHHHCCCHHHHHhhhcccccccCCHHHHHhccccceeecCCcccCCCCCHHHHHHHHHHHHHHH
Confidence 45 9999999999999999999999999999642 11233
Q ss_pred ---CCCCCchhhhhhcccceeccCCcccccCccCCccccchhhhhhhcCCHHHHHHHHHHHHHHHHHhhhcccccccee-
Q 004054 81 ---RLGIPAYEWWSEALHGVAGVGKGIFFNGTIRGATSFPQVILTAASFDSYLWYRIGQAIGLEARALYNAGQAIGMTF- 156 (776)
Q Consensus 81 ---rlgip~~~~~~d~~~g~~~~~~g~~~~~~~~~~t~fP~~~~lgAt~d~~l~~~~g~~~g~E~ra~~~~g~~~Gi~~- 156 (776)
++|||.+ +..|.++|+.. ..+.|.||+++++|||||+++++++|+++|+|+|++ |||+
T Consensus 82 ~~~~~giPll-i~~D~e~G~~~----------~~~~t~~p~~~~~aat~d~~l~~~~g~~~g~E~ra~-------Gin~~ 143 (388)
T d1x38a1 82 MSTRLGIPMI-YGIDAVHGQNN----------VYGATIFPHNVGLGATRDPYLVKRIGEATALEVRAT-------GIQYA 143 (388)
T ss_dssp HTSSSCCCCE-EEECCSSSSTT----------STTCCCCCCHHHHHHHTCHHHHHHHHHHHHHHHHHT-------TCCEE
T ss_pred HhccCCCCce-eecccccCccc----------ccccccchhhhhccccCCHHHHHHHHHHhhHHHHhc-------CCccc
Confidence 4456655 45555555431 125789999999999999999999999999999999 9998
Q ss_pred eccccccCCCCCCCccccCCCCCHHHHHHHHHHHHHHHhcCCCCCC---CC--CCCceeeEeeccccccCCCCCCCCcce
Q 004054 157 WAPNINIFRDPRWGRGQETPGEDPLVTGKYAVSYVRGVQGDTFNGG---KL--KGKLQASACCKHFTAYDLDNWKGTTRY 231 (776)
Q Consensus 157 ~aP~vdi~r~p~~gr~~esfgeDp~l~~~~a~a~v~GlQ~~g~~~~---~~--~~~~~v~a~~KHFpg~g~~~~~~~~~~ 231 (776)
|+|++||.|||+|||++|+|||||++++.|+. +|.++|+.....- .. .+..+|+||+|||||||.... ++.
T Consensus 144 ~aPv~Dv~~~p~~gr~~et~geDp~l~~~~~~-~v~~~~g~~~~~~~~G~~~~~~~~gV~a~~KHFpG~g~~~~---~~~ 219 (388)
T d1x38a1 144 FAPCIAVCRDPRWGRCYESYSEDRRIVQSMTE-LIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVD---GIN 219 (388)
T ss_dssp CCCBCCCCSCTTSTTGGGSSCSSHHHHHHGGG-HHHHHHCCCCTTCCTTCCCCCSTTSCBCEEEEETTGGGCGG---GCT
T ss_pred cCCcccccccccccccccCccCCHHHHHHHHh-hhhhhhchhhhhhcccccccccccCcceeeeeeecCCcccc---Ccc
Confidence 99999999999999999999999999999965 7888887521100 00 113469999999999985432 233
Q ss_pred eeccccCHHHHHhccCchHHHHHHcCCccEEEeeccccCCcccccCHHHHHHHHHhhcCCCeEEEcCchhHHhhhcCccc
Q 004054 232 KFDARVTMQDLADTYQPPFESCVKQGRASGIMCAYNRVNGIPSCADRNLLSKTARRQWGFHGYITSDCDAVSIIYDAEGY 311 (776)
Q Consensus 232 ~~~~~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~iLR~e~gf~G~VvSD~~~~~~~~~~~~~ 311 (776)
..++.+++++|++.||+||+++|++|.. +|||+||.+||+|+|.|+++|+++||++|||+|+|||||++|.++... +
T Consensus 220 ~~~~~i~~~~l~~~~l~pf~~~i~~g~~-~vM~s~~~~~g~pa~~s~~~l~~lLR~~~gF~G~VvSD~~~m~~~~~~--~ 296 (388)
T d1x38a1 220 ENNTIINREGLMNIHMPAYKNAMDKGVS-TVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTP--A 296 (388)
T ss_dssp TCEECCCHHHHHHHTSHHHHHHHHTTCC-EEEECSSEETTEEGGGCHHHHCCCCCTTSCCCSEEECCTTTTGGGSSS--T
T ss_pred ccccchhHHHHHHHhhhhhHHHHhhccc-cccccccccCCccccCCHHHHHHHHHhccCCCceeecchhhccccccc--c
Confidence 3345679999999999999999999876 999999999999999999999999999999999999999999988643 2
Q ss_pred cCCHHHHHHHHHHcCCCccCcc----hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCcCCCccc
Q 004054 312 AKSPEDAVVDVLKAGMDVNCGS----FLQKHTKAAVKQKKLPESEIDRALHNLFSVRMRLGLFNGNPTMQPFGKIGADVV 387 (776)
Q Consensus 312 ~~~~~ea~~~al~AG~D~~~~~----~~~~~l~~av~~g~i~~~~id~av~Ril~~k~~~Glf~~~p~~~~~~~~~~~~i 387 (776)
.....++++.++.||+||+|.+ .+.+.|.+||++|+|+++|||+||+|||++|+++|||| +|...+. ....+
T Consensus 297 ~~~~~~~~~~a~~ag~d~~~~~~~~~~~~~~l~~av~~G~i~~~rid~sv~Ril~~k~~lGlfd-~p~~~~~---~~~~i 372 (388)
T d1x38a1 297 GSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFE-NPYADPA---MAEQL 372 (388)
T ss_dssp TTTHHHHHHHHHHHTCCBEECCSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHTTTTT-CCSCCGG---GGGGT
T ss_pred CCcHHHHHHHHHhcCCCeecCCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCC-CCCCChh---hhhhc
Confidence 3456678899999999999853 45688999999999999999999999999999999999 6532221 12457
Q ss_pred CCHHHHHHHHHHHhhh
Q 004054 388 CSPAHQVLALQAAQDG 403 (776)
Q Consensus 388 ~~~~~~~la~~~A~es 403 (776)
++++|+++|+++|+||
T Consensus 373 ~~~~h~~~a~~aA~~S 388 (388)
T d1x38a1 373 GKQEHRDLAREAARKS 388 (388)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC
Confidence 8999999999999997
|
| >d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} | Back information, alignment and structure |
|---|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
| >d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
| >d1vjja2 b.1.5.1 (A:479-593) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2vzsa2 b.1.4.1 (A:778-899) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
| >d1g0da2 b.1.5.1 (A:472-583) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]} | Back information, alignment and structure |
|---|
| >d1ex0a2 b.1.5.1 (A:516-627) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
| >d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|