Citrus Sinensis ID: 004073
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 775 | 2.2.26 [Sep-21-2011] | |||||||
| O48700 | 771 | U-box domain-containing p | yes | no | 0.985 | 0.990 | 0.706 | 0.0 | |
| Q9C7G1 | 768 | U-box domain-containing p | no | no | 0.978 | 0.986 | 0.683 | 0.0 | |
| Q9CAG5 | 782 | U-box domain-containing p | no | no | 0.980 | 0.971 | 0.677 | 0.0 | |
| O23225 | 718 | U-box domain-containing p | no | no | 0.891 | 0.962 | 0.262 | 3e-54 | |
| Q9SNC6 | 660 | U-box domain-containing p | no | no | 0.776 | 0.912 | 0.280 | 9e-53 | |
| Q5XEZ8 | 707 | U-box domain-containing p | no | no | 0.547 | 0.599 | 0.323 | 4e-48 | |
| Q5VRH9 | 611 | U-box domain-containing p | no | no | 0.501 | 0.636 | 0.311 | 1e-45 | |
| Q9ZV31 | 654 | U-box domain-containing p | no | no | 0.762 | 0.903 | 0.27 | 1e-39 | |
| Q0IMG9 | 694 | E3 ubiquitin-protein liga | no | no | 0.425 | 0.475 | 0.313 | 1e-32 | |
| A2ZLU6 | 694 | Protein spotted leaf 11 O | N/A | no | 0.425 | 0.475 | 0.313 | 1e-32 |
| >sp|O48700|PUB6_ARATH U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1084 bits (2804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/777 (70%), Positives = 632/777 (81%), Gaps = 13/777 (1%)
Query: 1 MDIAEVEENLFAASDAKLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIA 60
MD++E+EENLFAASDAKLHGDMCK+LSA+YCK+LS+FPSLE +RPRSKSGIQ LCSLHIA
Sbjct: 1 MDVSELEENLFAASDAKLHGDMCKELSAVYCKVLSIFPSLEEARPRSKSGIQTLCSLHIA 60
Query: 61 LEKAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIV 120
LEKAKNIL HCSECSKLYLAITGD+VLLKFEKA+SAL +SLRRVEDIVP SIG QIL+IV
Sbjct: 61 LEKAKNILQHCSECSKLYLAITGDAVLLKFEKAKSALIDSLRRVEDIVPSSIGSQILDIV 120
Query: 121 NELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALT 180
ELE F LDPSEK+VGD IIALLQQG+KF++ +D+ ELE FHQAATRL ITSSR+AL
Sbjct: 121 GELEHTKFLLDPSEKEVGDRIIALLQQGKKFDNGSDSTELEIFHQAATRLSITSSRSALA 180
Query: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTIQC 240
ERRALKK+I+RARVEEDKRKESIVAYLLHLMRKYSKLFRSEM+D+NDS STPCSPT Q
Sbjct: 181 ERRALKKVIDRARVEEDKRKESIVAYLLHLMRKYSKLFRSEMMDENDSPCSTPCSPTGQG 240
Query: 241 SFEDGVHNGNEHAFDRQLSKLCSFNFRP-NNRRSGQMPLPPEELRCPISLQLMYDPVIIA 299
ED V+ AF RQLSK S N++P N+R+SGQMP+PPEELRCPISLQLMYDPVIIA
Sbjct: 241 PNEDRVN-----AFGRQLSKFGSINYKPMNSRKSGQMPIPPEELRCPISLQLMYDPVIIA 295
Query: 300 SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPD 359
SGQTYER+CIEKW SDGH++CPKTQQ+LPHL LTPNYCVKGLIASWCE NG++VP PP+
Sbjct: 296 SGQTYERVCIEKWFSDGHNSCPKTQQQLPHLSLTPNYCVKGLIASWCEQNGITVPTGPPE 355
Query: 360 SLDLNYWRLALSE-ESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQED 418
SLDLNYWRLA+S+ ES NSKS + V C K+++VVPLE S TIE +N E
Sbjct: 356 SLDLNYWRLAMSDSESPNSKSVDSVGLCTPKDIRVVPLEESSTIESERQQKEKNNAPDEV 415
Query: 419 ESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFL 478
+S NV E YQD L ++++ E+L +KC +VE +R+LLKD+EEAR+ GANGFV A L+FL
Sbjct: 416 DSEINVLEGYQDILAIVDKEEDLAKKCKVVENVRILLKDNEEARILMGANGFVEAFLQFL 475
Query: 479 ESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYL 538
ESAV + N+ AQE GAMALFNLAVNNNRNKELML +GVIPLLEKMIS S S G ATALYL
Sbjct: 476 ESAVHDNNAAAQETGAMALFNLAVNNNRNKELMLTSGVIPLLEKMISCSQSQGPATALYL 535
Query: 539 NLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGII 598
NLS L+ AKP+IGSS AV F V L T+ QCKLDALHALYNLST NIP LLS+ II
Sbjct: 536 NLSCLEKAKPVIGSSQAVSFFVNLLLQDTKTQCKLDALHALYNLSTYSPNIPTLLSSNII 595
Query: 599 SGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQA 658
LQ LA G+ +W EKSLAVLLNLA+S GKEEM +T G++S LATVLDTG+ +EQEQA
Sbjct: 596 KSLQVLASTGNHLWIEKSLAVLLNLASSREGKEEMITTQGMISTLATVLDTGDTVEQEQA 655
Query: 659 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPPV 718
VSCL +LC G+E C QMVLQEGVIP+LVSISVNGS RGRDK+Q+LLMLFREQR RD P
Sbjct: 656 VSCLVILCTGSESCIQMVLQEGVIPSLVSISVNGSPRGRDKSQKLLMLFREQRHRDQPSP 715
Query: 719 DIGQQDDDSSEKLKPTYTPTPDHAPES--KPLCKSISRRK-MGKAFSFLWKSKSYSV 772
+ +++ P P P APES KPL KSISRRK M + FSFLWK KS+S+
Sbjct: 716 N--KEEAPRKTVSAPMAIPAPVSAPESEVKPLTKSISRRKTMTRPFSFLWK-KSHSI 769
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1038 bits (2684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/783 (68%), Positives = 627/783 (80%), Gaps = 25/783 (3%)
Query: 1 MDIAEVEENLFAASDAKLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIA 60
MD+ EVEEN FA DAKLHG MC LS +YCKI+S+FPSLEA+RPRSKSGIQALCSLH+
Sbjct: 1 MDVNEVEENFFAPGDAKLHGKMCNALSVIYCKIMSIFPSLEAARPRSKSGIQALCSLHVV 60
Query: 61 LEKAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIV 120
LEK KNIL HC+E SKLYLAITGDSV+LKFEKA+S+L +SLRRVEDIV QSIG Q+LEI+
Sbjct: 61 LEKVKNILRHCTESSKLYLAITGDSVVLKFEKAKSSLTDSLRRVEDIVQQSIGSQLLEIL 120
Query: 121 NELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALT 180
ELE FSLDP+EK++GD II LLQQG F S+DNNELE FHQAATRLGITSSRAALT
Sbjct: 121 MELENTEFSLDPAEKEIGDQIIGLLQQGGNFESSSDNNELEVFHQAATRLGITSSRAALT 180
Query: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGST--PCSPTI 238
ERR LKKLIERAR+E+DKRKESIVAYLLHLMRKYSKLFRSE+ DDNDSQGS+ PCSPTI
Sbjct: 181 ERRCLKKLIERARMEDDKRKESIVAYLLHLMRKYSKLFRSEIWDDNDSQGSSSLPCSPTI 240
Query: 239 QCSFEDGVHNGNEHAFDRQLSKLCSFNFRP--NNRRSGQMPLPPEELRCPISLQLMYDPV 296
Q S +D + AFDRQLSKL SFNFR NNRRS QM +PPEELRCPISLQLMYDPV
Sbjct: 241 QGSIDDA----HGRAFDRQLSKLSSFNFRSCNNNRRSSQMSVPPEELRCPISLQLMYDPV 296
Query: 297 IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDS 356
IIASGQTYERICIEKW SDGH+TCPKT Q+L HLCLTPNYCVK LI+SWCE NGV VPD
Sbjct: 297 IIASGQTYERICIEKWFSDGHNTCPKTHQQLSHLCLTPNYCVKALISSWCEQNGVQVPDG 356
Query: 357 PPDSLDLNYWRLALS-EESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEE----SEYNDIE 411
PP+SLDLNYWRLALS EST+++S + V SCKLK++KVVPLE SGTI+E SEY
Sbjct: 357 PPESLDLNYWRLALSVSESTDTRSAKRVGSCKLKDVKVVPLEESGTIKEEACESEY---- 412
Query: 412 NIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFV 471
QED+ + ER + L L + + L +KC +VEQIR+LLKDDEEAR+ G NG V
Sbjct: 413 ----QEDQV--TLVERCTELLTTLTDVDTLRKKCRVVEQIRVLLKDDEEARILMGENGCV 466
Query: 472 VALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG 531
ALL+FL SA+ E N+ AQ++GAMALFNLAV+NNRNKELMLA+G+IPLLE+M+ N +SHG
Sbjct: 467 EALLQFLGSALNENNASAQKVGAMALFNLAVDNNRNKELMLASGIIPLLEEMLCNPHSHG 526
Query: 532 AATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPN 591
+ TA+YLNLS L++AKP+IGSS AVPF+V L +TE QCK+DALH+L++LST P NIP
Sbjct: 527 SVTAIYLNLSCLEEAKPVIGSSLAVPFMVNLLWTETEVQCKVDALHSLFHLSTYPPNIPC 586
Query: 592 LLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGE 651
LLSA +++ LQSL + + WTEKSLAVLLNL + AGK+EM S P LVS L T+LDTGE
Sbjct: 587 LLSADLVNALQSLTISDEQRWTEKSLAVLLNLVLNEAGKDEMVSAPSLVSNLCTILDTGE 646
Query: 652 LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711
EQEQAVS L +LCN +E C +MVLQEGVIP+LVSISVNG+ RGR++AQ+LL LFRE R
Sbjct: 647 PNEQEQAVSLLLILCNHSEICSEMVLQEGVIPSLVSISVNGTQRGRERAQKLLTLFRELR 706
Query: 712 QRDHPPVDIGQQDDDSSEKLKPTYTPTPDHAPESKPLCKSISRRKMGKAFSFLWKSKSYS 771
QRD + Q + +S + ++ E+KP CKS SR+KMG+AFSFLWKSKS+S
Sbjct: 707 QRDQTHLTEPQHTEVTSP--EDGFSVASAAVTETKPQCKSASRKKMGRAFSFLWKSKSFS 764
Query: 772 VSQ 774
V Q
Sbjct: 765 VYQ 767
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1030 bits (2664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/796 (67%), Positives = 623/796 (78%), Gaps = 36/796 (4%)
Query: 1 MDIAEVEENLFAASDAKLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIA 60
MD+ E+EENLFAASDAKLHGDMCK+LS + CK+LS+FPSLE +RPRSKSGIQALCSLHIA
Sbjct: 1 MDVTELEENLFAASDAKLHGDMCKELSGVLCKVLSIFPSLEGARPRSKSGIQALCSLHIA 60
Query: 61 LEKAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIV 120
LEKAKNIL HCSECSKLYLAITGD+VLLKFEKA+ AL + L+RVEDIVP SIG QILEIV
Sbjct: 61 LEKAKNILQHCSECSKLYLAITGDAVLLKFEKAKIALIDGLKRVEDIVPSSIGSQILEIV 120
Query: 121 NELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALT 180
ELE F LDPSEK+VGD IIALLQQG+KF++ NDN ELE FH+AATRL ITSSR AL
Sbjct: 121 GELENTRFMLDPSEKEVGDQIIALLQQGKKFDNCNDNTELEIFHRAATRLSITSSRVALA 180
Query: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTIQC 240
ERRALKKLI+RAR EEDKRKESIVAYLLHLMRK SKLFRSE++D+NDS GS PCSP
Sbjct: 181 ERRALKKLIDRARAEEDKRKESIVAYLLHLMRKCSKLFRSEILDENDSPGSYPCSPN--- 237
Query: 241 SFEDGVHNGNEHAFDRQLSKLCSFNFRP-NNRRSGQMPLPPEELRCPISLQLMYDPVIIA 299
ED +G+ H F RQLS+ S N +P N+ SGQMP+PPEELRCPISLQLM DPVIIA
Sbjct: 238 --ED---HGSVHGFGRQLSRFGSLNDKPMNSINSGQMPVPPEELRCPISLQLMCDPVIIA 292
Query: 300 SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPD 359
SGQTYER+CIEKW SDGH+TCPKTQQ+LPH+ LTPN CVKGLIASWCE NG +P PP+
Sbjct: 293 SGQTYERVCIEKWFSDGHNTCPKTQQQLPHISLTPNNCVKGLIASWCEQNGTQIPSGPPE 352
Query: 360 SLDLNYWRLALSE-ESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQED 418
S DL+YWRLALS+ EST S+S + S KLK +K+VPLE +GT N E+ + +D
Sbjct: 353 SQDLDYWRLALSDSESTKSQSVNSIGSYKLKGVKIVPLEENGTTVVERQNTEESFVSDDD 412
Query: 419 ESGN---NVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALL 475
+ + NV ERYQD L VLNE E L +KC +VE+IRLLLKDDEEAR+F GANGFV ALL
Sbjct: 413 DEEDSDINVLERYQDLLAVLNEEEGLEKKCKVVEKIRLLLKDDEEARIFMGANGFVEALL 472
Query: 476 RFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATA 535
RFL SAV + N+ AQ+ GAMALFNLAVNNNRNKELML +GVI LLEKMIS++ SHG+ATA
Sbjct: 473 RFLGSAVDDNNAAAQDSGAMALFNLAVNNNRNKELMLTSGVIRLLEKMISSAESHGSATA 532
Query: 536 LYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSA 595
LYLNLS LD+AK +IGSS AVPFLV+L + + E QCKLDALHALYNLST NIP LLS+
Sbjct: 533 LYLNLSCLDEAKSVIGSSQAVPFLVQLLQKEIETQCKLDALHALYNLSTYSPNIPALLSS 592
Query: 596 GIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIE 654
II LQ LA G+ +W EKSLAVLLNLA+S GK+E S+ G++S LATVLD G+ E
Sbjct: 593 NIIKSLQGLLASTGENLWIEKSLAVLLNLASSQEGKDEAVSSQGMISSLATVLDMGDTTE 652
Query: 655 QEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ-- 712
QEQAVSCL +LCNG E C QMVLQEGVIP+LVSISVNG+ RGR+K+Q+LLMLFRE+RQ
Sbjct: 653 QEQAVSCLLILCNGRESCIQMVLQEGVIPSLVSISVNGTPRGREKSQKLLMLFREERQQR 712
Query: 713 ------RDHPPVDIGQQDDDSSEKLKP---TYTPTPDHAP----ESKPLCKSISRRK-MG 758
RD PP Q + + + L + TP A E + L KS+SRRK M
Sbjct: 713 DQPSSNRDEPP-----QKEPARKSLSAPLSVHGSTPASASVQDYEPRVLSKSMSRRKSMA 767
Query: 759 KAFSFLWKSKSYSVSQ 774
+ FSF WK KSYSV +
Sbjct: 768 RPFSFFWK-KSYSVRE 782
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|O23225|PUB5_ARATH U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 214 bits (544), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 201/765 (26%), Positives = 341/765 (44%), Gaps = 74/765 (9%)
Query: 17 KLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIALEKAKNILHHCSECSK 76
K+H MC +L L +I+ +FP +E +RP SGIQ LC LH AL+K K +L +CSE SK
Sbjct: 14 KMHSSMCLELKRLVDRIMRIFPDIEDARPGCSSGIQTLCLLHNALDKTKQLLQYCSESSK 73
Query: 77 LYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIVNELETIAFSLDPSEKQ 136
LY+A+TGD++L + +A+ +L + L + IVP + +I +IV +L + +L+ SE++
Sbjct: 74 LYMAVTGDAILARGSRAKKSLEQCLNDIRSIVPTILEIKISQIVQDLRSTQLTLEFSEEE 133
Query: 137 VGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALTERRALKKLIERARVEE 196
G I L+Q+ + S D E++ FH AA +L +++ A +TERR+LK + E
Sbjct: 134 AGKAIRELMQKSTSSSASPD--EIKDFHYAALKLQLSTPEAIVTERRSLKIIC------E 185
Query: 197 DKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDR 256
D ++ S + + IDD+ + HNG
Sbjct: 186 DHKQNSFTHH--------------QSIDDS-------LHANAAEAEASEEHNGT------ 218
Query: 257 QLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDG 316
LP E+ +C +S +MYDPVII+SG T+ER+ I+KW +G
Sbjct: 219 ---------------------LP-EKFKCTLSRTVMYDPVIISSGNTFERMQIQKWFDEG 256
Query: 317 HSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPD------SPPDSLDLNYWRLAL 370
+ +CP +++KL L PN +K I+ WC NG+ V D +S+D + +
Sbjct: 257 NDSCPISKRKLDDFTLKPNVELKSQISEWCAKNGLDVQDPARKHVKASNSIDFSVSIASF 316
Query: 371 SEESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQD 430
N + + + + + Y +G+ +
Sbjct: 317 GSSLYNIPDHSGISITDFNSSYSIDSSSYSKMSKGGYFTPMQRIDSASGAGDTDSSHSEI 376
Query: 431 FLNVLNEGENLGQKCNI--VEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSY 488
++ L NL I VE +R + A + F+ L+ +L++A+ ERN
Sbjct: 377 EIDPLCGLTNLPWDAQIKVVEDVRSRFEHSTRAFRSMSPSKFLEPLITYLKNAL-ERNGT 435
Query: 489 AQEI--GAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDA 546
A EI G + L ++ NR L V + + + A + LS
Sbjct: 436 AGEIIKGGLDLLLAFLSGNRRAIESLEEEVFKMFSVFLESEVVAEEALNILEVLSNHPHG 495
Query: 547 KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV 606
I SS ++ L+++ + + EH + A+ L NLS+ ++S I L S
Sbjct: 496 PSKITSSGSLSSLLKIVESQAEH-LQEQAMITLKNLSSSMEICLEMVSLDFIQKLTSFL- 553
Query: 607 PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666
++ + S+ +L NL ++ G+ + TP ++ +A +L++ EQE A+S L LC
Sbjct: 554 -QQKVFCKHSIIILKNLCSTEKGRGCITETPDCLASIAELLESNVPEEQENAISILLQLC 612
Query: 667 NGNEKCCQMVLQEG--VIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQD 724
+ C +V++E + +L+ IS NG+ + A LL E ++ +
Sbjct: 613 VQKIEYCCLVVREATDIYSSLILISNNGTEEVKVSASELLRALVEVDSDKEEEEEVSSRP 672
Query: 725 DDSSEKLKPTYTPTPDHAPESKPLCKSISRRKM-GKAFSFLWKSK 768
+ + + TP PE + S + + G FS L K K
Sbjct: 673 EGRTTASPTSQVVTPVTHPEPVKITPSPKKSGLFGFNFSSLKKKK 717
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 199/709 (28%), Positives = 329/709 (46%), Gaps = 107/709 (15%)
Query: 5 EVEENLFAASDAKLH-GDMCKKLSALYCKILSVFPSL-EASRPRSKSGIQALCSLHIALE 62
+V + A SD ++ +C L+ ++ +F + E++ P S+ ++ L +L A+
Sbjct: 14 DVVNEIAAISDYRITVKKLCYNLARRLKLLVPMFEEIRESNEPISEDTLKTLMNLKEAMC 73
Query: 63 KAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRV---EDIVPQSIGCQILEI 119
AK+ L CS+ SK+YL + + V K + L +SL ++ E + + Q+ +
Sbjct: 74 SAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIPYEELDISDEVREQVELV 133
Query: 120 VNELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELES-FHQAATRLGITSSRAA 178
+++ +D S+ ++ +D+ +L N S+D + + + A +L +
Sbjct: 134 LSQFRRAKGRVDVSDDELYEDLQSLC------NKSSDVDAYQPVLERVAKKLHLMEIPDL 187
Query: 179 LTERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTI 238
E AL +++ + + + E + A +L +++ + ++E DDN +
Sbjct: 188 AQESVALHEMVASSGGDVGENIEEM-AMVLKMIKDF---VQTE--DDNGEEQKV------ 235
Query: 239 QCSFEDGVHNGNEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVII 298
GV++ + N + + S ++P+ P++ RCPISL++M DPVI+
Sbjct: 236 ------GVNSRS--------------NGQTSTAASQKIPVIPDDFRCPISLEMMRDPVIV 275
Query: 299 ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPP 358
+SGQTYER CIEKW+ GHSTCPKTQQ L LTPNY ++ LIA WCE N + P PP
Sbjct: 276 SSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVLRSLIAQWCEANDIE-PPKPP 334
Query: 359 DSLDLNYWRLALSEESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQED 418
SL P +VS +E N IE
Sbjct: 335 SSLR--------------------------------PRKVSSFSSPAEANKIE------- 355
Query: 419 ESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFL 478
D + L G Q+ E IRLL K + + RV G + L+ L
Sbjct: 356 -----------DLMWRLAYGNPEDQRSAAGE-IRLLAKRNADNRVAIAEAGAIPLLVGLL 403
Query: 479 ESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGA--ATAL 536
+ +S QE AL NL++ N NK +++AG IP + +++ + A A
Sbjct: 404 STP----DSRIQEHSVTALLNLSICEN-NKGAIVSAGAIPGIVQVLKKGSMEARENAAAT 458
Query: 537 YLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAG 596
+LS +D+ K IG+ A+P LV L T+ + K DA AL+NL N + AG
Sbjct: 459 LFSLSVIDENKVTIGALGAIPPLVVLLNEGTQ-RGKKDAATALFNLCIYQGNKGKAIRAG 517
Query: 597 IISGLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQ 655
+I L L PG M E +LA+L L++ GK + S+ V L + TG +
Sbjct: 518 VIPTLTRLLTEPGSGMVDE-ALAILAILSSHPEGKAIIGSSDA-VPSLVEFIRTGSPRNR 575
Query: 656 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704
E A + L LC+G+ + + G++ L+ ++ NG+ RG+ KA +LL
Sbjct: 576 ENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLL 624
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 193 bits (491), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 154/476 (32%), Positives = 240/476 (50%), Gaps = 52/476 (10%)
Query: 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 339
P + RC +SL+LM DPVI+ASGQT+ER+ I+KW+ G CPKT+Q L H LTPN+ V+
Sbjct: 241 PSDFRCSLSLELMTDPVIVASGQTFERVFIQKWIDMGLMVCPKTRQALSHTTLTPNFIVR 300
Query: 340 GLIASWCEMNGVSVPDSPPDSLDLNY----WRLALSEESTNSKSNEIVRSCKLKEMKVV- 394
+ASWCE N V PPD L+L + + L + +S N S +E++ V
Sbjct: 301 AFLASWCETNNV----YPPDPLELIHSSEPFPLLVESVRASSSENGHSESLDAEELRQVF 356
Query: 395 ------PLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEG------ENLG 442
P VS + +++ N+ N A + +N ++ + + + G G
Sbjct: 357 SRSASAPGIVSEVVCKTKRNN--NAAADRSLTRSNTPWKFPEERHWRHPGIIPATVRETG 414
Query: 443 QKCNIVEQIRLLLKD----------DEEARVFTGA-----NGFVVALLRFLESAVCERNS 487
+I +++ L+ D + AR+ A N V+A + S V S
Sbjct: 415 SSSSIETEVKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYS 474
Query: 488 YAQEIGAMA---LFNLAVNNNRNKELMLAAG-VIPLLEKM----ISNSNSHGAATALYLN 539
+ I A A L NL++N+N NK L+ +G ++PL+ + + + ++ AAT +
Sbjct: 475 TDERIQADAVTCLLNLSINDN-NKSLIAESGAIVPLIHVLKTGYLEEAKANSAAT--LFS 531
Query: 540 LSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIIS 599
LS +++ K IG + A+ LV+L G K DA AL+NLS N ++ AG +
Sbjct: 532 LSVIEEYKTEIGEAGAIEPLVDLL-GSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVR 590
Query: 600 GLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 659
L L P M EK++ VL NLA GK + G + L V++ G +E A
Sbjct: 591 YLVELMDPAFGM-VEKAVVVLANLATVREGKIAIGEEGG-IPVLVEVVELGSARGKENAT 648
Query: 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDH 715
+ L LC + K C V++EGVIP LV+++ +G+ RG++KAQ LL F+ RQ +
Sbjct: 649 AALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHRQSNQ 704
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 144/463 (31%), Positives = 217/463 (46%), Gaps = 74/463 (15%)
Query: 251 EHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIE 310
+HA D ++ S R P+ P+E RCPISL+LM DPVI++SGQTYER CI+
Sbjct: 208 DHANDALTTRSASIKHR--------SPIIPDEFRCPISLELMQDPVIVSSGQTYERSCIQ 259
Query: 311 KWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLAL 370
KWL GH TCPKTQQ L H LTPN+ +K LI+ WCE NG+ +P
Sbjct: 260 KWLDSGHKTCPKTQQPLSHTSLTPNFVLKSLISQWCEANGIELP---------------- 303
Query: 371 SEESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQD 430
+ NS+ + +S S+Y D +G
Sbjct: 304 -KNKQNSRDKKAAKS-------------------SDY----------DHAG------LVS 327
Query: 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 490
+N L G Q+ E IRLL K + R+ G + L+ L S+ + Q
Sbjct: 328 LMNRLRSGNQDEQRAAAGE-IRLLAKRNVNNRICIAEAGAIPLLVNLLSSS----DPRTQ 382
Query: 491 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLDDAKP 548
E AL NL+++ N NK ++ + IP + +++ + + A A +LS +D+ K
Sbjct: 383 EHAVTALLNLSIHEN-NKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKV 441
Query: 549 IIGSSHAVPFLVE-LCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVP 607
IG++ A+P L+ LC G + K DA A++NL N + AGI+ L + V
Sbjct: 442 TIGAAGAIPPLINLLCDGSP--RGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVD 499
Query: 608 GDPMWTEKSLAVLLNLAASAAGKEEM-NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666
+++L++L LA + GK + S P + L V+ TG +E A + L+LLC
Sbjct: 500 PTGGMIDEALSLLSILAGNPEGKIVIARSEP--IPPLVEVIKTGSPRNRENAAAILWLLC 557
Query: 667 NGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709
+ + + GV AL +S G+ R + KA +L L +
Sbjct: 558 SADTEQTLAAKAAGVEDALKELSETGTDRAKRKASSILELMHQ 600
|
Possesses E3 ubiquitin-protein ligase in vitro. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 189/700 (27%), Positives = 313/700 (44%), Gaps = 109/700 (15%)
Query: 38 PSLEASRPRSKSG---IQALCSLHIALEKAKNILHHCSECSKLYLAITGDSVLLKFEKAR 94
P LE R +S + AL S+ +L AK++L S SK+YL + D V++KF+K
Sbjct: 46 PMLEEIRDNQESSSEVVNALLSVKQSLLHAKDLLSFVSHVSKIYLVLERDQVMVKFQKVT 105
Query: 95 SALAESLRRVEDIVPQSIGCQILEIVNELETIAFSLDPSEKQVGDDIIALLQQ-GRKFND 153
S L ++L I+P + LEI +EL+ +QV ++ L + G++ D
Sbjct: 106 SLLEQAL----SIIP----YENLEISDELK----------EQVELVLVQLRRSLGKRGGD 147
Query: 154 SNDNNELESFHQAATRLGITSSRAALTERRALKKLIERARVEE--DKRKESIVAYLLHLM 211
D+ + L + S R ++ E ++++ E+ ++ D +ES+ LL ++
Sbjct: 148 VYDDELYKDV------LSLYSGRGSVMESDMVRRVAEKLQLMTITDLTQESLA--LLDMV 199
Query: 212 RKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPNNR 271
S D+ + S ++ +D V N + D L S P +R
Sbjct: 200 --------SSSGGDDPGESFEKMSMVLK-KIKDFVQTYNPNLDDAPLRLKSSL---PKSR 247
Query: 272 RSGQ-MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 330
+ M +PPEE RCPISL+LM DPVI++SGQTYER CI+KWL GH TCPKTQ+ L
Sbjct: 248 DDDRDMLIPPEEFRCPISLELMTDPVIVSSGQTYERECIKKWLEGGHLTCPKTQETLTSD 307
Query: 331 CLTPNYCVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLALSEESTNSKSNEIVRSCKLKE 390
+TPNY ++ LIA WCE NG+ P P ++ + + S + + + N+I LK
Sbjct: 308 IMTPNYVLRSLIAQWCESNGIEPPKRP--NISQPSSKASSSSSAPDDEHNKI-EELLLKL 364
Query: 391 MKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQ 450
P + E +N + + + + + L + N+ Q+ +
Sbjct: 365 TSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRT--QEHAVTSI 422
Query: 451 IRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL 510
+ L + + + ++ ++G V ++ L+ E A+E A LF+L+V + NK
Sbjct: 423 LNLSICQENKGKIVY-SSGAVPGIVHVLQKGSME----ARENAAATLFSLSV-IDENKVT 476
Query: 511 MLAAGVIPLLEKMISNSNSHG---AATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT 567
+ AAG IP L ++S + G AATAL+ NL K + VP L+ L T
Sbjct: 477 IGAAGAIPPLVTLLSEGSQRGKKDAATALF-NLCIFQGNKGKAVRAGLVPVLMRLL---T 532
Query: 568 EHQCKL--DALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625
E + + ++L L LS+ P + +A + L G P E S AVL++
Sbjct: 533 EPESGMVDESLSILAILSSHPDGKSEVGAADAVPVLVDFIRSGSPRNKENSAAVLVH--- 589
Query: 626 SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPAL 685
LC+ N++ + G++ L
Sbjct: 590 ---------------------------------------LCSWNQQHLIEAQKLGIMDLL 610
Query: 686 VSISVNGSTRGRDKAQRLLMLFRE--QRQRDHPPVDIGQQ 723
+ ++ NG+ RG+ KA +LL F +Q+ H + + Q
Sbjct: 611 IEMAENGTDRGKRKAAQLLNRFSRFNDQQKQHSGLGLEDQ 650
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 182/379 (48%), Gaps = 49/379 (12%)
Query: 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 339
P+E RCPISL+LM DPVI+++GQTYER CIEKW++ GH TCP TQQK+ LTPNY ++
Sbjct: 274 PDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLR 333
Query: 340 GLIASWCEMNGV------SVPDSPP-----------DSL-------DLNYWRLALSEEST 375
LI+ WCE NG+ + P+ P D+L D R A +E
Sbjct: 334 SLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRL 393
Query: 376 NSKSNEIVRSCKLKEMKVVPLEVSGT------IEESEYNDIENIYAQEDESGNNVFE-RY 428
+K N R C + E +PL +S +E + N+ ED + +
Sbjct: 394 LAKRNANNRIC-IAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAV 452
Query: 429 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSY 488
++VL G ++ L + D E +V G G + AL+ L E +
Sbjct: 453 PSIVHVLKNGSMEARENAAATLFSLSVID--EYKVTIGGMGAIPALVVLL----GEGSQR 506
Query: 489 AQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGA----ATALYLNLSFLD 544
++ A ALFNL + NK + AG++PL+ +++N GA A A+ LS
Sbjct: 507 GKKDAAAALFNLCIYQG-NKGRAIRAGLVPLIMGLVTNPT--GALMDEAMAILSILSSHP 563
Query: 545 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSA---GIISGL 601
+ K IG++ VP LVE+ T + +A + +L + ++ +L A GI+ L
Sbjct: 564 EGKAAIGAAEPVPVLVEMIGSGTPRN-RENAAAVMLHLCSGEHHLVHLARAQECGIMVPL 622
Query: 602 QSLAVPGDPMWTEKSLAVL 620
+ LA+ G K++ +L
Sbjct: 623 RELALNGTDRGKRKAVQLL 641
|
E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 182/379 (48%), Gaps = 49/379 (12%)
Query: 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 339
P+E RCPISL+LM DPVI+++GQTYER CIEKW++ GH TCP TQQK+ LTPNY ++
Sbjct: 274 PDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLR 333
Query: 340 GLIASWCEMNGV------SVPDSPP-----------DSL-------DLNYWRLALSEEST 375
LI+ WCE NG+ + P+ P D+L D R A +E
Sbjct: 334 SLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRL 393
Query: 376 NSKSNEIVRSCKLKEMKVVPLEVSGT------IEESEYNDIENIYAQEDESGNNVFE-RY 428
+K N R C + E +PL +S +E + N+ ED + +
Sbjct: 394 LAKRNANNRIC-IAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAV 452
Query: 429 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSY 488
++VL G ++ L + D E +V G G + AL+ L E +
Sbjct: 453 PSIVHVLKNGSMEARENAAATLFSLSVID--EYKVTIGGMGAIPALVVLL----GEGSQR 506
Query: 489 AQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGA----ATALYLNLSFLD 544
++ A ALFNL + NK + AG++PL+ +++N GA A A+ LS
Sbjct: 507 GKKDAAAALFNLCIYQG-NKGRAIRAGLVPLIMGLVTNPT--GALMDEAMAILSILSSHP 563
Query: 545 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSA---GIISGL 601
+ K IG++ VP LVE+ T + +A + +L + ++ +L A GI+ L
Sbjct: 564 EGKAAIGAAEPVPVLVEMIGSGTPRN-RENAAAVMLHLCSGEHHLVHLARAQECGIMVPL 622
Query: 602 QSLAVPGDPMWTEKSLAVL 620
+ LA+ G K++ +L
Sbjct: 623 RELALNGTDRGKRKAVQLL 641
|
Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity. Oryza sativa subsp. indica (taxid: 39946) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 775 | ||||||
| 224107629 | 786 | predicted protein [Populus trichocarpa] | 0.996 | 0.982 | 0.763 | 0.0 | |
| 255547774 | 774 | ubiquitin-protein ligase, putative [Rici | 0.984 | 0.985 | 0.757 | 0.0 | |
| 225425823 | 783 | PREDICTED: U-box domain-containing prote | 0.997 | 0.987 | 0.761 | 0.0 | |
| 147865125 | 783 | hypothetical protein VITISV_036163 [Viti | 0.997 | 0.987 | 0.758 | 0.0 | |
| 224100037 | 775 | predicted protein [Populus trichocarpa] | 0.987 | 0.987 | 0.759 | 0.0 | |
| 356566571 | 765 | PREDICTED: U-box domain-containing prote | 0.981 | 0.994 | 0.733 | 0.0 | |
| 356540164 | 764 | PREDICTED: U-box domain-containing prote | 0.981 | 0.996 | 0.728 | 0.0 | |
| 356525144 | 766 | PREDICTED: U-box domain-containing prote | 0.980 | 0.992 | 0.719 | 0.0 | |
| 356512357 | 764 | PREDICTED: U-box domain-containing prote | 0.979 | 0.993 | 0.723 | 0.0 | |
| 357463053 | 766 | U-box domain-containing protein [Medicag | 0.983 | 0.994 | 0.706 | 0.0 |
| >gi|224107629|ref|XP_002314542.1| predicted protein [Populus trichocarpa] gi|222863582|gb|EEF00713.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1207 bits (3123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/787 (76%), Positives = 680/787 (86%), Gaps = 15/787 (1%)
Query: 1 MDIAEVEENLFAASDAKLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIA 60
MDI EVEENLFAASDAKLHG+MCK+LS +YCKILS+FPSLEA+RPRSKSGIQALCS+HIA
Sbjct: 1 MDITEVEENLFAASDAKLHGEMCKELSVIYCKILSIFPSLEAARPRSKSGIQALCSMHIA 60
Query: 61 LEKAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIV 120
LEKAKN+L HCSECSKLYLAITGDSVLLKFEKARSAL +SLRRVEDIVPQSIGC+ILEIV
Sbjct: 61 LEKAKNVLRHCSECSKLYLAITGDSVLLKFEKARSALVDSLRRVEDIVPQSIGCEILEIV 120
Query: 121 NELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALT 180
+ELE FSLDP EKQVGD+II LLQQGRKF++ ND NELESFH+AAT+LGITSSRAALT
Sbjct: 121 SELEGTVFSLDPLEKQVGDEIIVLLQQGRKFDNCNDTNELESFHEAATKLGITSSRAALT 180
Query: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTIQC 240
ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRS++ DDNDSQGS PCSPT++
Sbjct: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSDLTDDNDSQGSAPCSPTVEG 240
Query: 241 SFEDGVHNGNEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIAS 300
SFEDG G+ HAF+R LSKL S NF+PN R+SGQMPLPPEELRCPISL LMYDPVIIAS
Sbjct: 241 SFEDGGPGGDGHAFERHLSKLSSLNFKPNFRKSGQMPLPPEELRCPISLHLMYDPVIIAS 300
Query: 301 GQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDS 360
GQTYERICIEKW SDGH TCPKTQQKL HLCLTPNYCVKGL+ASWCE NGV PD PP+S
Sbjct: 301 GQTYERICIEKWFSDGHDTCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPAPDGPPES 360
Query: 361 LDLNYWRLALSE-ESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQ--- 416
LDLNYWRLA+SE +S NS+S EIV S KLK +KV+PLE SG IEE+E + EN+ Q
Sbjct: 361 LDLNYWRLAMSELDSANSRSVEIVGSGKLKGVKVIPLEGSGLIEEAEETETENLSPQQED 420
Query: 417 ---EDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVA 473
ED+ +NVFERYQ+FL +LN E+L +KC IVEQ+RLLLKDDEEAR+F GANGFV A
Sbjct: 421 SVPEDDFEDNVFERYQNFLTILNSDEDLKKKCKIVEQVRLLLKDDEEARIFMGANGFVEA 480
Query: 474 LLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAA 533
LL+FLESAV RN A+EIGAMALFNLAVNNNRNKE+MLA+GVI LLE MISNS+S G+A
Sbjct: 481 LLQFLESAVHARNPMAEEIGAMALFNLAVNNNRNKEMMLASGVISLLEDMISNSDSDGSA 540
Query: 534 TALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLL 593
TALYLNLS L++AK IIGSSHAVPFLV++ +G+T QCKLDALHALYNLS+ P+NIPNLL
Sbjct: 541 TALYLNLSCLEEAKSIIGSSHAVPFLVQILQGETGAQCKLDALHALYNLSSHPTNIPNLL 600
Query: 594 SAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGEL 652
SAGIISGLQS LAVPGD W EKS+AVL+NLA S + K+EM S GL+SGLAT+LDTGE
Sbjct: 601 SAGIISGLQSVLAVPGDHAWIEKSIAVLINLACSQSAKDEMLSASGLISGLATILDTGEP 660
Query: 653 IEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712
IEQEQAV+CL++LCNG+EK Q+VLQEGVIPALVSISVNG+TRG++KAQ+LLMLFREQRQ
Sbjct: 661 IEQEQAVACLYILCNGSEKGSQLVLQEGVIPALVSISVNGTTRGKEKAQKLLMLFREQRQ 720
Query: 713 RDHPPVDIGQQDDDSS-----EKLKPTYTPTPDHAPESKPLCKSISRRKMGKAFSFLWKS 767
RD P ++ Q D SS ++++ + P APE+KPLCKS+SRRKMGKA S WKS
Sbjct: 721 RDQPSAEVHFQRDQSSAEVRFQRIESSSMSMP--APETKPLCKSVSRRKMGKAISVFWKS 778
Query: 768 KSYSVSQ 774
KSYSV Q
Sbjct: 779 KSYSVYQ 785
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255547774|ref|XP_002514944.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223545995|gb|EEF47498.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1199 bits (3103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/784 (75%), Positives = 675/784 (86%), Gaps = 21/784 (2%)
Query: 1 MDIAEVEENLFAASDAKLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIA 60
MDI EVEENLFAASDAKLHG+MCK LSA YCKILS+FPSLEA+RPRSKSGIQALCSLHIA
Sbjct: 1 MDITEVEENLFAASDAKLHGEMCKALSATYCKILSIFPSLEAARPRSKSGIQALCSLHIA 60
Query: 61 LEKAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIV 120
LEKAKNIL HCSECSKLYLAITGDSVLLKFEKARSAL +SLRRVEDIVPQSIG QILEI+
Sbjct: 61 LEKAKNILQHCSECSKLYLAITGDSVLLKFEKARSALVDSLRRVEDIVPQSIGSQILEII 120
Query: 121 NELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALT 180
+ELE I FSLDP EKQVGD+II+LLQQGRKF++ ND+NELESFHQAAT+LGITSSRAALT
Sbjct: 121 SELEGILFSLDPLEKQVGDEIISLLQQGRKFDNCNDSNELESFHQAATKLGITSSRAALT 180
Query: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTIQC 240
ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSE+ DDNDSQGS PCSPT+Q
Sbjct: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSELTDDNDSQGSAPCSPTVQG 240
Query: 241 SFEDGVHNGNEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIAS 300
SF++GV HAF+RQL+KL SFNF+PNNRRSGQ+P+PPEELRCPISLQLMYDPVIIAS
Sbjct: 241 SFDEGVDG---HAFERQLTKLSSFNFKPNNRRSGQIPVPPEELRCPISLQLMYDPVIIAS 297
Query: 301 GQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDS 360
GQTYERICIEKW SDGH TCPKTQQKL HLCLTPNYCVKGL+ SWCE NGV VPD PP+S
Sbjct: 298 GQTYERICIEKWFSDGHDTCPKTQQKLSHLCLTPNYCVKGLVTSWCEQNGVPVPDGPPES 357
Query: 361 LDLNYWRLALSE-ESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQEDE 419
LDLNY+RL+L + ES NS+S + + S KLK MKVVPLE +G IEE+E +E++ Q++E
Sbjct: 358 LDLNYFRLSLCQSESANSRSVDSINSGKLKGMKVVPLEENGAIEEAEQQKMESLTPQQEE 417
Query: 420 SG------NNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVA 473
+ +++FERYQ+ L LNE +L +KC +VE+IR LLKDDEEAR+ GANGF+
Sbjct: 418 ASLEEDFEDDMFERYQNLLTTLNEEGDLRRKCKVVEKIRRLLKDDEEARICMGANGFIEG 477
Query: 474 LLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAA 533
LL+FLESAV RN+ AQE+GAMALFNLAVNNNRNKEL+LAAGVIPLLE MI NS+SHG+A
Sbjct: 478 LLQFLESAVHARNTMAQEVGAMALFNLAVNNNRNKELLLAAGVIPLLEMMIFNSDSHGSA 537
Query: 534 TALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLL 593
TALYLNLS L+DAK IIGSS AVPFLV++ +G+ E QCK+DALH LYNLS+ SNI NLL
Sbjct: 538 TALYLNLSCLEDAKAIIGSSQAVPFLVQILQGEDEPQCKMDALHTLYNLSSRASNILNLL 597
Query: 594 SAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGEL 652
SAGI SGLQS LA PGD WTEKS+AVL+NLA++A+GK+EM +TPGL+ GLAT+LDTGE
Sbjct: 598 SAGITSGLQSLLAAPGDRAWTEKSIAVLINLASNASGKDEMVTTPGLIGGLATILDTGEP 657
Query: 653 IEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712
IEQEQA SCL++LCNG+EKC Q+VLQEGVIPALVSISVNG+ RG++KAQ+LLMLFREQRQ
Sbjct: 658 IEQEQAASCLYILCNGSEKCSQLVLQEGVIPALVSISVNGTIRGKEKAQKLLMLFREQRQ 717
Query: 713 RD--HPPVDIGQQDDDSSEKLKPTYTPTPDHAPESKPLCKSISRRKMGKAFSFLWKSKSY 770
RD PP ++ Q +SS K P A ESKPLCKS+SRRKMGKA SF WKSKSY
Sbjct: 718 RDQPQPPAEVRFQRAESSSKAMP--------AQESKPLCKSVSRRKMGKALSFFWKSKSY 769
Query: 771 SVSQ 774
SV Q
Sbjct: 770 SVYQ 773
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425823|ref|XP_002264918.1| PREDICTED: U-box domain-containing protein 6-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1194 bits (3088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/783 (76%), Positives = 669/783 (85%), Gaps = 10/783 (1%)
Query: 1 MDIAEVEENLFAASDAKLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIA 60
MDI EVEE+LFA SDAKLHG MC+ LS +YCKIL +FP LEA+RPRSKSGIQALCSLHIA
Sbjct: 1 MDIHEVEESLFAVSDAKLHGGMCRMLSTIYCKILEIFPVLEAARPRSKSGIQALCSLHIA 60
Query: 61 LEKAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIV 120
LEKAKNIL HCSECSKLYLAITGDSV LKFEKAR ALA+SLRRVEDIVPQ+IG QI EIV
Sbjct: 61 LEKAKNILQHCSECSKLYLAITGDSVALKFEKARCALADSLRRVEDIVPQTIGVQISEIV 120
Query: 121 NELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALT 180
+ELE AF+LDP EKQVGDDIIALLQQGRKFN+SNDNNELESFHQAA+RLGITSSRAALT
Sbjct: 121 SELEGTAFALDPLEKQVGDDIIALLQQGRKFNNSNDNNELESFHQAASRLGITSSRAALT 180
Query: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTIQC 240
ERRALKKLIERAR+EEDKRKESIVAYLLHLMRKYSKLFRSE+ DDNDSQGS PCSPT+
Sbjct: 181 ERRALKKLIERARIEEDKRKESIVAYLLHLMRKYSKLFRSELSDDNDSQGSAPCSPTVMG 240
Query: 241 SFEDGVHNG-NEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIA 299
S EDGV HAF+RQLSKL SFNF+PNNRRSGQMPLP EELRCPISLQLMYDPVII+
Sbjct: 241 SLEDGVGPAVYGHAFERQLSKLGSFNFKPNNRRSGQMPLPQEELRCPISLQLMYDPVIIS 300
Query: 300 SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPD 359
SGQTYERICIEKW SDGH+TCPKTQQ+L HLCLTPNYCVKGLIASWCE NGV VPD PP+
Sbjct: 301 SGQTYERICIEKWFSDGHNTCPKTQQQLSHLCLTPNYCVKGLIASWCEQNGVPVPDGPPE 360
Query: 360 SLDLNYWRLALSE-ESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQED 418
SLDLNYWRLALSE ESTNSKS + + SCK+K +KVVPLE SG IEE E N++EN++ Q++
Sbjct: 361 SLDLNYWRLALSECESTNSKSMDSIGSCKMKGVKVVPLEESGIIEEVEGNEMENVHEQDE 420
Query: 419 ESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFL 478
ES NVFERY++FL +L+ E+L +KC + EQIR LLKDDEEAR F GANGFV AL+RFL
Sbjct: 421 ES-ENVFERYENFLAILDGEEDLRKKCKVAEQIRHLLKDDEEARNFMGANGFVEALMRFL 479
Query: 479 ESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYL 538
E AV RN AQEIGAMALFNLAVNNNRNKELMLA+GV+PLLE+MI NSNSHG+ATALYL
Sbjct: 480 ELAVRGRNEMAQEIGAMALFNLAVNNNRNKELMLASGVLPLLEEMIPNSNSHGSATALYL 539
Query: 539 NLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGII 598
NLS L++AKP+I +S AVPFL+ L KTE QCKLDALHALYNLST P+NIPNLL+AGII
Sbjct: 540 NLSCLEEAKPMISTSQAVPFLIHLLGAKTEPQCKLDALHALYNLSTHPANIPNLLAAGII 599
Query: 599 SGLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ 657
SGL SL P D WTEK+LAV +NLA++ GK+E+ PGL+SGLAT+LD GE IEQEQ
Sbjct: 600 SGLHSLLTDPADNTWTEKTLAVFVNLASNKLGKDEIMVAPGLISGLATILDVGEAIEQEQ 659
Query: 658 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPP 717
AV CL +LCNG+EKC QMVLQEGVIPALVSISVNG+ RG++KAQ+LLMLFREQRQRD P
Sbjct: 660 AVVCLLILCNGSEKCSQMVLQEGVIPALVSISVNGTVRGKEKAQKLLMLFREQRQRDPSP 719
Query: 718 VDIGQQDDDSSEKL-----KPTYTPTPDHAP-ESKPLCKSISRRKMGKAFSFLWKSKSYS 771
V + S+E + KP + + P ESKP CKSISRRK+GKA+++LWKSK+YS
Sbjct: 720 VGSPHHTESSTEAVPGPESKPLESKALETKPLESKPYCKSISRRKVGKAWNYLWKSKNYS 779
Query: 772 VSQ 774
V Q
Sbjct: 780 VYQ 782
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147865125|emb|CAN79836.1| hypothetical protein VITISV_036163 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1189 bits (3076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/783 (75%), Positives = 666/783 (85%), Gaps = 10/783 (1%)
Query: 1 MDIAEVEENLFAASDAKLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIA 60
MDI EVEE+LFA SDAKLHG MC+ LS +YCKIL +FP LEA+RPRSKSGIQALCSLHIA
Sbjct: 1 MDIHEVEESLFAVSDAKLHGGMCRXLSTIYCKILEIFPVLEAARPRSKSGIQALCSLHIA 60
Query: 61 LEKAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIV 120
LEKAKNIL HCSECSKLYLAITGDSV LKFEKAR ALA+SLRRVEDIVPQ+IG QI EIV
Sbjct: 61 LEKAKNILQHCSECSKLYLAITGDSVALKFEKARCALADSLRRVEDIVPQTIGVQISEIV 120
Query: 121 NELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALT 180
+ELE AF+LDP EKQVGDDIIALLQQGRKFN+SNDNNELESFHQAA+RLGITSSRAALT
Sbjct: 121 SELEGTAFALDPLEKQVGDDIIALLQQGRKFNNSNDNNELESFHQAASRLGITSSRAALT 180
Query: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTIQC 240
ERRALKKLIERAR+EEDKRKESIVAYLLHLMRKYSKLFRSE+ DDNDSQGS PCSPT+
Sbjct: 181 ERRALKKLIERARIEEDKRKESIVAYLLHLMRKYSKLFRSELSDDNDSQGSAPCSPTVMG 240
Query: 241 SFEDGVHNG-NEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIA 299
S EDGV HAF+RQLSKL SFNF+PNNRRSGQMPLP EELRCPISLQLMYDPVII+
Sbjct: 241 SLEDGVGPAVYGHAFERQLSKLGSFNFKPNNRRSGQMPLPQEELRCPISLQLMYDPVIIS 300
Query: 300 SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPD 359
SGQTYERICIEKW SDGH+TCPKTQQ+L HLCLTPNYCVKGLIASWCE NGV VPD PP+
Sbjct: 301 SGQTYERICIEKWFSDGHNTCPKTQQQLSHLCLTPNYCVKGLIASWCEQNGVPVPDGPPE 360
Query: 360 SLDLNYWRLALSE-ESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQED 418
SLDLNYWRLALSE ESTNSKS + + SCK+K +KVVPLE SG IEE E N++EN++ Q++
Sbjct: 361 SLDLNYWRLALSECESTNSKSMDSIGSCKMKGVKVVPLEESGIIEEVEGNEMENVHEQDE 420
Query: 419 ESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFL 478
ES N FERY++FL +L+ E+L +KC + EQIR LLKDDEEAR F GANGFV AL+RFL
Sbjct: 421 ES-ENXFERYENFLAILDGEEDLRKKCKVAEQIRHLLKDDEEARNFMGANGFVEALMRFL 479
Query: 479 ESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYL 538
E V RN AQEIGAMALFNLAVNNNRNKELMLA GV+PLLE+MI NSNSHG+ATALYL
Sbjct: 480 ELXVRGRNEMAQEIGAMALFNLAVNNNRNKELMLAXGVLPLLEEMIPNSNSHGSATALYL 539
Query: 539 NLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGII 598
NLS L++AKP+I +S AVPFL+ L KTE QCKLDALHALYNLST P+NIPNLL+AGII
Sbjct: 540 NLSCLEEAKPMISTSQAVPFLIHLLGAKTEPQCKLDALHALYNLSTHPANIPNLLAAGII 599
Query: 599 SGLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ 657
SGL SL P D WTEK+LAV +NLA++ GK+E+ PGL+SGLAT+LD GE IEQEQ
Sbjct: 600 SGLHSLLTDPADNTWTEKTLAVFVNLASNKLGKDEIMVAPGLISGLATILDVGEAIEQEQ 659
Query: 658 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPP 717
AV CL +LCNG+EKC QMVLQEGVIPALVSISVNG+ RG++KAQ+LLMLFREQRQRD P
Sbjct: 660 AVVCLLILCNGSEKCSQMVLQEGVIPALVSISVNGTVRGKEKAQKLLMLFREQRQRDPSP 719
Query: 718 VDIGQQDDDSSEKL-----KPTYTPTPDHAP-ESKPLCKSISRRKMGKAFSFLWKSKSYS 771
V + S+E + KP + + P ESKP CKSISRRK+GKA+++LWKSK+YS
Sbjct: 720 VGSPHHTESSTEAVPGPESKPLESKALETKPLESKPYCKSISRRKVGKAWNYLWKSKNYS 779
Query: 772 VSQ 774
V Q
Sbjct: 780 VYQ 782
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224100037|ref|XP_002311720.1| predicted protein [Populus trichocarpa] gi|222851540|gb|EEE89087.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1175 bits (3039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/783 (75%), Positives = 669/783 (85%), Gaps = 18/783 (2%)
Query: 1 MDIAEVEENLFAASDAKLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIA 60
MDI+EVEENLFAAS+AKLHG+MCK+LS +YCKI S+FPSLEA+RPRSKSGIQALC LHIA
Sbjct: 1 MDISEVEENLFAASEAKLHGEMCKELSVVYCKISSIFPSLEAARPRSKSGIQALCLLHIA 60
Query: 61 LEKAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIV 120
LEKAKN+L HCSECSKLYLAITGDSVLLKFEKARSAL +SLRRVEDIVPQSIGCQILEIV
Sbjct: 61 LEKAKNVLKHCSECSKLYLAITGDSVLLKFEKARSALVDSLRRVEDIVPQSIGCQILEIV 120
Query: 121 NELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALT 180
+ELE FSLDP EKQVGD+IIALLQQGRKF+DSNDN ELESFHQAAT+LGITSSRAALT
Sbjct: 121 SELEGTEFSLDPLEKQVGDEIIALLQQGRKFDDSNDNTELESFHQAATKLGITSSRAALT 180
Query: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTIQC 240
ERRALKKLIERARVEEDKRKESIVAYLLHLM+KYSKLFRSE+ DDNDSQGS+PCSPT+Q
Sbjct: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMKKYSKLFRSELTDDNDSQGSSPCSPTVQG 240
Query: 241 SFEDGVHNGNEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIAS 300
S EDG GN HAF+RQLSKL SFNF+P R+SGQMPLPPEELRCPISL LMYDPVIIAS
Sbjct: 241 SLEDGGPGGNGHAFERQLSKLSSFNFKPTYRKSGQMPLPPEELRCPISLHLMYDPVIIAS 300
Query: 301 GQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDS 360
GQTYERICIEKW SDGH TCPKTQQKL H CLTPNYCVKGL+ASWCE NGV PD PP+S
Sbjct: 301 GQTYERICIEKWFSDGHETCPKTQQKLSHRCLTPNYCVKGLVASWCEQNGVPAPDGPPES 360
Query: 361 LDLNYWRLALSE-ESTNS-KSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQED 418
LDLNYWRLA+S+ +S+NS +S E VRS KLK +KVVPLE SG IEE+E + E + +Q++
Sbjct: 361 LDLNYWRLAMSQFDSSNSRRSVESVRSGKLKGVKVVPLEESGPIEEAEEKN-EKLSSQQE 419
Query: 419 ES------GNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVV 472
+S G N+FE Y++FL +LN E L +KC IVEQ+RLLLKDDEEAR+F GANGFV
Sbjct: 420 DSMPEDAFGYNIFEIYKNFLAILNGDEELKKKCKIVEQVRLLLKDDEEARIFMGANGFVE 479
Query: 473 ALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGA 532
ALL+FLESAV + A+E GAMALFNL VNNNRN E+MLAAG IPLLE MISN +S G+
Sbjct: 480 ALLQFLESAVRAGSPMAEEAGAMALFNLTVNNNRNNEMMLAAGAIPLLEVMISNPDSDGS 539
Query: 533 ATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNL 592
ATALYLNLS LD+AK IIGSS AVPFLV++ KG+T QCKLDALHALYNLS+ +NI NL
Sbjct: 540 ATALYLNLSCLDEAKSIIGSSQAVPFLVQILKGETGVQCKLDALHALYNLSSRSTNISNL 599
Query: 593 LSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGE 651
LSAGIISGLQS LAVPGD W EKS+AVL+NLA+S + K+EM S PGL+SGLAT+LDT E
Sbjct: 600 LSAGIISGLQSLLAVPGDHAWIEKSIAVLINLASSQSAKDEMLSAPGLISGLATILDTVE 659
Query: 652 LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711
IEQEQAV+CLF+LCNG+EK ++VLQEGVIPALVSISVNG+TRG++KAQ+LLMLFREQR
Sbjct: 660 PIEQEQAVACLFVLCNGSEKGSELVLQEGVIPALVSISVNGTTRGKEKAQKLLMLFREQR 719
Query: 712 QRDHPPVDIGQQDDDSSEKLKPTYTPTPDHAPESKPLCKSISRRKMGKAFSFLWKSKSYS 771
QRD P ++ Q +SS K P APESKP CK +SRRKMGKA SF WKSKSYS
Sbjct: 720 QRDQPSAEVCFQRTESSSKSMP--------APESKPQCKPVSRRKMGKAISFFWKSKSYS 771
Query: 772 VSQ 774
V Q
Sbjct: 772 VYQ 774
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566571|ref|XP_003551504.1| PREDICTED: U-box domain-containing protein 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1159 bits (2998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/777 (73%), Positives = 660/777 (84%), Gaps = 16/777 (2%)
Query: 1 MDIAEVEENLFAASDAKLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIA 60
MD+AEVEE+ FAASDAKLHG+MCK LSA+YCKILS+FPSLEA+RPRSKSGIQALCSLH+A
Sbjct: 1 MDVAEVEESFFAASDAKLHGEMCKCLSAIYCKILSLFPSLEAARPRSKSGIQALCSLHVA 60
Query: 61 LEKAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIV 120
LEKAKN+L HCSECSKLYLAITGDSVLLKFEKA+ AL +SL+RVEDIVPQSIGCQI EIV
Sbjct: 61 LEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALGDSLKRVEDIVPQSIGCQIDEIV 120
Query: 121 NELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALT 180
EL + F+LDPSEKQVGDD+IALLQQGRKF+DSND+NELE FH AATRLGITSSR ALT
Sbjct: 121 KELASTVFALDPSEKQVGDDLIALLQQGRKFSDSNDSNELECFHLAATRLGITSSRTALT 180
Query: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTIQC 240
ERRALKKLIERAR EEDKRKESI+A+LLHLMRKYSKLFRSE DDNDSQGS PCSPT+Q
Sbjct: 181 ERRALKKLIERARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQR 240
Query: 241 SFEDGVHNGNEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIAS 300
S EDG+ +G+ HAFDRQLSKL SFNF+PNNR+SGQM LPPEELRCPISLQLM DPVIIAS
Sbjct: 241 SLEDGIPSGHCHAFDRQLSKLSSFNFKPNNRKSGQMLLPPEELRCPISLQLMSDPVIIAS 300
Query: 301 GQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDS 360
GQTYER+CIEKW DGH+TCPKTQQKL HLCLTPNYCVKGL+ASWCE NGV +P+ PP+S
Sbjct: 301 GQTYERVCIEKWFRDGHNTCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPES 360
Query: 361 LDLNYWRLALSE-ESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQEDE 419
LD NYWRLALS+ ESTNS+S V SCKLK +KVVP+E SG E+ N E+ AQE++
Sbjct: 361 LDFNYWRLALSDTESTNSRSVNSVGSCKLKGVKVVPVEESGISEQMGGNATESFCAQEED 420
Query: 420 SGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLE 479
+ E+Y FL VL EG N +KC +VEQ+RLLL+DDEEAR+F GANGFV AL++FL+
Sbjct: 421 N-----EQYVSFLKVLTEGNNWKRKCKVVEQLRLLLRDDEEARIFMGANGFVEALMQFLQ 475
Query: 480 SAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLN 539
SAV E N+ A EIGAMALFNLAVNNNRNKE+M++ G++ LLE+MIS ++S+G A ALYLN
Sbjct: 476 SAVHEANAMALEIGAMALFNLAVNNNRNKEIMISTGILSLLEEMISKTSSYGCAVALYLN 535
Query: 540 LSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIIS 599
LS LD AK +IG+S AV FL+++ + KTE QCK+D+LHALYNLST+PSNIPNLLS+GI+
Sbjct: 536 LSCLDKAKHMIGTSQAVQFLIQILEAKTEVQCKIDSLHALYNLSTVPSNIPNLLSSGIMD 595
Query: 600 GLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQA 658
GLQSL V GD MWTEK +AVL+NLA AG+E+M PGL+S LA+ LDTGE IEQEQA
Sbjct: 596 GLQSLLVDQGDCMWTEKCIAVLINLAVYQAGREKMMLAPGLISALASTLDTGEPIEQEQA 655
Query: 659 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPPV 718
SCL +LCN +E+CCQMVLQEGVIPALVSISVNG++RGR+KAQ+LLM+FREQRQRDH PV
Sbjct: 656 ASCLLILCNRSEECCQMVLQEGVIPALVSISVNGTSRGREKAQKLLMVFREQRQRDHSPV 715
Query: 719 DIGQQDDDSSEKLKPTYTPTPDHAPESKPLCKSISRRK-MGKAFSFLWKSKSYSVSQ 774
I Q + +SS+ P P++KPL K+ISRRK +GKAFSFLWKSKSYSV Q
Sbjct: 716 KIDQPESESSDLSMP--------PPDTKPLSKTISRRKVVGKAFSFLWKSKSYSVYQ 764
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540164|ref|XP_003538560.1| PREDICTED: U-box domain-containing protein 7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1140 bits (2950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/776 (72%), Positives = 653/776 (84%), Gaps = 15/776 (1%)
Query: 1 MDIAEVEENLFAASDAKLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIA 60
MD+ E EE+ FAASDAKLHG+MCK L A+YCKILS+FPSLEA+RPRSKSGIQALCSLH+A
Sbjct: 1 MDVVEAEESFFAASDAKLHGEMCKCLFAIYCKILSLFPSLEAARPRSKSGIQALCSLHVA 60
Query: 61 LEKAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIV 120
LEKAKN+L HCSECSKLYLAITGDSVLLKFEKA+ AL +SL+RVEDIVPQSIGCQI EIV
Sbjct: 61 LEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLKRVEDIVPQSIGCQIEEIV 120
Query: 121 NELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALT 180
EL + F+LDPSEKQVGDD+IALLQQGRKF+DSND+NELE FH AATRLGITSSR ALT
Sbjct: 121 KELASTVFALDPSEKQVGDDLIALLQQGRKFSDSNDSNELECFHLAATRLGITSSRTALT 180
Query: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTIQC 240
ERRALKKLIERAR EEDKRKESI+A+LLHLMRKYSKLFRSE DDNDSQGS PCSPT+Q
Sbjct: 181 ERRALKKLIERARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQR 240
Query: 241 SFEDGVHNGNEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIAS 300
S EDG+ G+ HAFDRQLSKL SFNF+PNNR+SGQM LPPEELRCPISLQLM DPVIIAS
Sbjct: 241 SLEDGIPGGHCHAFDRQLSKLSSFNFKPNNRKSGQMLLPPEELRCPISLQLMSDPVIIAS 300
Query: 301 GQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDS 360
GQTYERICIEKW DGH+TCPKTQQKL HLCLTPNYCVKGL+ASWCE NGV +P+ PP+S
Sbjct: 301 GQTYERICIEKWFRDGHNTCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPES 360
Query: 361 LDLNYWRLALSE-ESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQEDE 419
LD NYWRLALS+ ESTNS+S V SCKLK +KVVP+E SG E++ N E+ AQE++
Sbjct: 361 LDFNYWRLALSDTESTNSRSVNSVSSCKLKGVKVVPVEESGISEQTGGNATESFSAQEED 420
Query: 420 SGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLE 479
+ ERY FL VL EG N +KC +VEQ+RLLL+DDEEAR+F G NGFV AL++FL+
Sbjct: 421 N-----ERYLSFLKVLTEGNNWKRKCRVVEQLRLLLRDDEEARIFMGTNGFVEALMQFLQ 475
Query: 480 SAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLN 539
SAV E N A E GAMALFNLAVNNNRNKE+M+A G++ LLE+MIS ++S+G A ALYLN
Sbjct: 476 SAVLEANVMALENGAMALFNLAVNNNRNKEIMIATGILSLLEEMISKTSSYGCAVALYLN 535
Query: 540 LSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIIS 599
LS LD+AK +IG+S AV FL+++ + KTE QCK+D+LHALYNLST+PSNIPNLLS+GII
Sbjct: 536 LSCLDEAKHVIGTSQAVQFLIQILQDKTEVQCKIDSLHALYNLSTVPSNIPNLLSSGIIC 595
Query: 600 GLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQA 658
LQSL V GD MWTEK +AVL+NLA S G+E++ PGL+S LA+ LDTGE IEQEQA
Sbjct: 596 SLQSLLVGQGDCMWTEKCIAVLINLAVSHVGREKLMLAPGLISALASTLDTGEPIEQEQA 655
Query: 659 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPPV 718
SCL +LCN +E+CC+MVLQEGVIPALVSISVNG++RGR+KAQ+LLM+FREQRQ+DH PV
Sbjct: 656 ASCLLILCNRSEECCEMVLQEGVIPALVSISVNGTSRGREKAQKLLMVFREQRQQDHSPV 715
Query: 719 DIGQQDDDSSEKLKPTYTPTPDHAPESKPLCKSISRRKMGKAFSFLWKSKSYSVSQ 774
Q++ +SS+ P PE+K L KSISRRK+GKAFSFLWKSKSYSV Q
Sbjct: 716 KTDQRESESSDLSMP--------PPETKLLSKSISRRKVGKAFSFLWKSKSYSVYQ 763
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525144|ref|XP_003531187.1| PREDICTED: U-box domain-containing protein 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1114 bits (2882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/778 (71%), Positives = 641/778 (82%), Gaps = 18/778 (2%)
Query: 1 MDIAEVEENLFAASDAKLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIA 60
MD+AEVEENLFAASDAKLHG MCK LS +YCK+LSVFPSLEA+RPRSKSGIQALCSLH+A
Sbjct: 2 MDVAEVEENLFAASDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVA 61
Query: 61 LEKAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIV 120
LEK KN+L HCSECSKLYLAITGDSVLLKFEKA+ AL +SLRRVEDIVPQSIGCQ+ EIV
Sbjct: 62 LEKVKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIV 121
Query: 121 NELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALT 180
NE TI F+LDPSEKQVGDD+IALLQQGRK NDSND+NELESFHQAATRLGI SSRAAL
Sbjct: 122 NEFATIEFALDPSEKQVGDDLIALLQQGRKLNDSNDSNELESFHQAATRLGIASSRAALA 181
Query: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTIQC 240
ERRALKKLI RAR EEDKRKESI+AYLLHLMRKYSKLFR+E DDNDSQGS PCSP++Q
Sbjct: 182 ERRALKKLIVRARSEEDKRKESIIAYLLHLMRKYSKLFRNEFSDDNDSQGSAPCSPSVQG 241
Query: 241 SFEDGVHNGNEHAFDRQLSKLCSFNFRPNN-RRSGQMPLPPEELRCPISLQLMYDPVIIA 299
S ED V + AFDRQLSKL FNF+PNN R+SGQMPLPPEELRCPISLQLMYDPV IA
Sbjct: 242 SIEDSVPGSHCQAFDRQLSKLSCFNFKPNNSRKSGQMPLPPEELRCPISLQLMYDPVTIA 301
Query: 300 SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPD 359
SGQTYER+ IEKW SDGH+ CPKTQQKL HLCLTPNYCVKGL+ASWCE NGV +P+ PP+
Sbjct: 302 SGQTYERVWIEKWFSDGHNNCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPE 361
Query: 360 SLDLNYWRLALSE-ESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQED 418
SLDLNYW + LSE ESTNSKS + V CKLK + VVPLE SG EE N E++ AQE+
Sbjct: 362 SLDLNYWGMVLSESESTNSKSIDSVSYCKLKGVLVVPLEESGISEEYVENGTESVSAQEE 421
Query: 419 ESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFL 478
+S E+Y FL VL EG N ++C +VEQ+RLLL+DDEEAR+F GANGFV ALL+FL
Sbjct: 422 DS-----EQYFSFLKVLTEGNNWRKQCEVVEQLRLLLRDDEEARIFMGANGFVEALLQFL 476
Query: 479 ESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYL 538
+SA+ E + A E GAMALFNLAVNNNRNKE+ML+AGV+ LLE+MIS ++S+G TALYL
Sbjct: 477 QSALREGSLMALESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGCTTALYL 536
Query: 539 NLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGII 598
NLS L++AKP+IG + AV FL++L + ++ QCK D+LHALYNLST+PSNIP LLS GII
Sbjct: 537 NLSCLEEAKPMIGVTQAVQFLIQLLQSDSDVQCKQDSLHALYNLSTVPSNIPCLLSFGII 596
Query: 599 SGLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ 657
SGLQSL V GD +WTEK +AVL+NLA S G+EE+ STPGL+ LA++LDTGELIEQEQ
Sbjct: 597 SGLQSLLVGEGDSIWTEKCVAVLINLATSQVGREEIVSTPGLIGALASILDTGELIEQEQ 656
Query: 658 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPP 717
AVSCL +LCN +E+C +MVLQEGVIPALVSISVNG+ RG++KAQ+LLMLFREQR RD P
Sbjct: 657 AVSCLLILCNRSEECSEMVLQEGVIPALVSISVNGTPRGQEKAQKLLMLFREQR-RDPSP 715
Query: 718 VDIGQQDDDSSEKLKPTYTPTPDHAP-ESKPLCKSISRRKMGKAFSFLWKSKSYSVSQ 774
V + K P P E KP+CKSI RRK G+AFSF WK+KSYSV Q
Sbjct: 716 VK--------THKCPPETASDLSMPPAEMKPICKSILRRKSGRAFSFFWKNKSYSVYQ 765
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512357|ref|XP_003524886.1| PREDICTED: U-box domain-containing protein 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1108 bits (2866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/777 (72%), Positives = 645/777 (83%), Gaps = 18/777 (2%)
Query: 1 MDIAEVEENLFAASDAKLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIA 60
MD+AEVEENLFAASDAKLHG MCK LS +YCK+LSVFPSLEA+RPRSKSGIQALCSLH+A
Sbjct: 2 MDVAEVEENLFAASDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVA 61
Query: 61 LEKAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIV 120
LEK KN+L HCSECSKLYLAITGDSVLLKFEKA+ AL +SLRRVEDIVPQSIGCQ+ EIV
Sbjct: 62 LEKVKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIV 121
Query: 121 NELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALT 180
NE TI F+LDPSEKQVGDD+IALLQQGRKFNDSND+NELESFHQAATRLGITSSRAAL
Sbjct: 122 NEFATIEFALDPSEKQVGDDLIALLQQGRKFNDSNDSNELESFHQAATRLGITSSRAALA 181
Query: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTIQC 240
ERRALKKLIERA+ EEDKRKE I+AYLLHLMRKYSKLFR+E DDNDSQGS PCSP +Q
Sbjct: 182 ERRALKKLIERAQSEEDKRKELIIAYLLHLMRKYSKLFRNEFSDDNDSQGSAPCSP-VQG 240
Query: 241 SFEDGVHNGNEHAFDRQLSKLCSFNFRPN-NRRSGQMPLPPEELRCPISLQLMYDPVIIA 299
S ED V + AFDRQLSK FNF+PN +R SGQMPLPPEELRCPISLQLMYDPVIIA
Sbjct: 241 SIEDSVPGSHCQAFDRQLSKFSCFNFKPNISRTSGQMPLPPEELRCPISLQLMYDPVIIA 300
Query: 300 SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPD 359
SGQTYER+CIEKW SDGH+ CPKTQQKL HLCLTPNYCVKGL++SWCE NGV +P+ PP+
Sbjct: 301 SGQTYERVCIEKWFSDGHNNCPKTQQKLSHLCLTPNYCVKGLVSSWCEQNGVPIPEGPPE 360
Query: 360 SLDLNYWRLALSE-ESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQED 418
SLDLNYW L LSE ESTNSKS V SCKLK + VVPLE SG EES N E++ AQE+
Sbjct: 361 SLDLNYWGLVLSESESTNSKSVNSVSSCKLKGVHVVPLEESGISEESVENGTESVSAQEE 420
Query: 419 ESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFL 478
++ E+Y FL VL E N ++C +VEQ+RLLL+DDEEAR+F GANGFV ALL+FL
Sbjct: 421 DT-----EQYFSFLKVLTEVNNWRKQCEVVEQLRLLLRDDEEARIFMGANGFVEALLQFL 475
Query: 479 ESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYL 538
+SAV E + A E GAMALFNLAVNNNRNKE+ML+AGV+ LLE+MI ++S+G TALYL
Sbjct: 476 QSAVREGSLMALESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMIPKTSSYGCTTALYL 535
Query: 539 NLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGII 598
+LS L++AKP+IG S AV FL++L + ++ QCK D+LHALYNLST+PSNIP LLS+G+I
Sbjct: 536 SLSCLEEAKPMIGMSQAVQFLIQLLQSDSDVQCKQDSLHALYNLSTVPSNIPYLLSSGVI 595
Query: 599 SGLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ 657
SGLQSL V GD +WTEK +AVL+NLA S G+EE+ STPGL+ LA++LDTGELIEQEQ
Sbjct: 596 SGLQSLLVGEGDCIWTEKCVAVLINLATSQVGREEIVSTPGLIGALASILDTGELIEQEQ 655
Query: 658 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPP 717
AVSCL +LCN +E+C +MVLQEGVIPALVSISVNG+ RG++KAQ+LLMLFREQR RD P
Sbjct: 656 AVSCLLILCNRSEECSEMVLQEGVIPALVSISVNGTPRGQEKAQKLLMLFREQR-RDPSP 714
Query: 718 VDIGQQDDDSSEKLKPTYTPTPDHAPESKPLCKSISRRKMGKAFSFLWKSKSYSVSQ 774
V Q ++S+ P E KPLCKSISRRK G+AFSF WK+KSYSV Q
Sbjct: 715 VKTHQCSPEASDLSMP--------PAEMKPLCKSISRRKSGRAFSFFWKNKSYSVYQ 763
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463053|ref|XP_003601808.1| U-box domain-containing protein [Medicago truncatula] gi|355490856|gb|AES72059.1| U-box domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1097 bits (2836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/776 (70%), Positives = 639/776 (82%), Gaps = 14/776 (1%)
Query: 1 MDIAEVEENLFAASDAKLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIA 60
MD++EVEE+ FAASDAKLH +MC+ LSA+YCK+LS+FPSLEA+RPRSKSGIQALCSLH+A
Sbjct: 2 MDVSEVEESFFAASDAKLHAEMCRSLSAIYCKVLSLFPSLEAARPRSKSGIQALCSLHVA 61
Query: 61 LEKAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIV 120
LEKAKN+L HCSECSKLYLAITGDSVLLKFEKA+ AL +SL+ VEDIV QSIG QI EIV
Sbjct: 62 LEKAKNVLKHCSECSKLYLAITGDSVLLKFEKAKCALVDSLKLVEDIVSQSIGYQIDEIV 121
Query: 121 NELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALT 180
NE+ + F+LDPSEKQVGDD+IALLQQ RKFN+SND++ELE FH AATRLGITSSRAALT
Sbjct: 122 NEIAGMVFALDPSEKQVGDDLIALLQQDRKFNNSNDSSELECFHMAATRLGITSSRAALT 181
Query: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTIQC 240
ERRALKKLIERAR EEDKRKESI+AYLLHLMRKYSKLFRSE DDNDSQGS PCSPT+Q
Sbjct: 182 ERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQS 241
Query: 241 SFEDGVHNGNEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIAS 300
+ V G+ FDRQ+SKL SFNF+PNN++SGQMPLPPEELRCPISLQLM DPVIIAS
Sbjct: 242 CSPNVVPGGHCQVFDRQISKLGSFNFKPNNKKSGQMPLPPEELRCPISLQLMSDPVIIAS 301
Query: 301 GQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDS 360
GQTYER CIEKW +DGH+TCPKTQQKL HL LTPNYCVKGL+ASWCE N + +P+ PP+S
Sbjct: 302 GQTYERACIEKWFNDGHNTCPKTQQKLAHLSLTPNYCVKGLVASWCEQNRIPIPEGPPES 361
Query: 361 LDLNYWRLALSE-ESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQEDE 419
LD NYWRLALS+ ES NS+S V SCKLK +KVVPLE + +E++E N E+ AQE+E
Sbjct: 362 LDFNYWRLALSDSESINSRSVNSVNSCKLKGVKVVPLEENSILEKTEGNVTESFSAQEEE 421
Query: 420 SGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLE 479
E+Y L VL EG N +KC +VEQ+RLLL+DDEEAR+F GANGFV AL +FL+
Sbjct: 422 DS----EKYLSLLKVLTEGNNWKRKCKVVEQLRLLLRDDEEARIFMGANGFVEALFQFLQ 477
Query: 480 SAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLN 539
SAV E N+ A E GAMALFNLAVNNNRNKELM++AG++ LLE+MIS ++S+ ATALYLN
Sbjct: 478 SAVHEGNAMALENGAMALFNLAVNNNRNKELMISAGILSLLEEMISCTSSYSCATALYLN 537
Query: 540 LSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIIS 599
LS L++AK +IG S AV FL+++ K E QCKLDALHALYN+ST+PSNI NLLS+GII+
Sbjct: 538 LSCLEEAKHMIGVSQAVQFLIQMLGTKIEVQCKLDALHALYNISTVPSNISNLLSSGIIN 597
Query: 600 GLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQA 658
GLQSL V + WTEK +AVL+NLA S G+EEM P L+S LA++LDTGE IEQEQA
Sbjct: 598 GLQSLLVGQAECSWTEKCIAVLVNLAVSHEGREEMMLNPELISTLASILDTGESIEQEQA 657
Query: 659 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPPV 718
VSCL +LCN +EKCC+MVLQEG IPALVSI+VNG++RGR+KAQ+LLMLFREQRQRDH P
Sbjct: 658 VSCLLILCNRSEKCCEMVLQEGAIPALVSITVNGTSRGREKAQKLLMLFREQRQRDHSPA 717
Query: 719 DIGQQDDDSSEKLKPTYTPTPDHAPESKPLCKSISRRKMGKAFSFLWKSKSYSVSQ 774
+ D S E + P E+KPL KSISRRK+GKA SFLWKSKSYSV Q
Sbjct: 718 NT---QDCSPEAGDLSMPPR-----ETKPLSKSISRRKVGKALSFLWKSKSYSVYQ 765
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 775 | ||||||
| TAIR|locus:2032472 | 771 | AT1G24330 [Arabidopsis thalian | 0.985 | 0.990 | 0.693 | 4.7e-277 | |
| TAIR|locus:2010424 | 768 | PUB45 "plant U-box 45" [Arabid | 0.983 | 0.992 | 0.675 | 1.8e-270 | |
| TAIR|locus:2008813 | 782 | AT1G67530 [Arabidopsis thalian | 0.987 | 0.978 | 0.671 | 1.5e-266 | |
| TAIR|locus:2115365 | 718 | AT4G36550 [Arabidopsis thalian | 0.238 | 0.257 | 0.385 | 2.8e-56 | |
| TAIR|locus:2075140 | 660 | PUB13 "plant U-box 13" [Arabid | 0.152 | 0.178 | 0.478 | 2.5e-51 | |
| TAIR|locus:2045334 | 829 | PUB4 "plant U-box 4" [Arabidop | 0.326 | 0.305 | 0.335 | 4.1e-43 | |
| UNIPROTKB|Q0IMG9 | 694 | SPL11 "E3 ubiquitin-protein li | 0.096 | 0.108 | 0.626 | 9.6e-42 | |
| TAIR|locus:2017719 | 612 | AT1G23030 [Arabidopsis thalian | 0.202 | 0.256 | 0.354 | 1.5e-35 | |
| UNIPROTKB|Q5VRH9 | 611 | PUB12 "U-box domain-containing | 0.478 | 0.607 | 0.281 | 1.9e-28 | |
| TAIR|locus:2181077 | 674 | SAUR21 "SMALL AUXIN UP RNA 21" | 0.086 | 0.099 | 0.552 | 5.8e-28 |
| TAIR|locus:2032472 AT1G24330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2663 (942.5 bits), Expect = 4.7e-277, P = 4.7e-277
Identities = 539/777 (69%), Positives = 621/777 (79%)
Query: 1 MDIAEVEENLFAASDAKLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIA 60
MD++E+EENLFAASDAKLHGDMCK+LSA+YCK+LS+FPSLE +RPRSKSGIQ LCSLHIA
Sbjct: 1 MDVSELEENLFAASDAKLHGDMCKELSAVYCKVLSIFPSLEEARPRSKSGIQTLCSLHIA 60
Query: 61 LEKAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIV 120
LEKAKNIL HCSECSKLYLAITGD+VLLKFEKA+SAL +SLRRVEDIVP SIG QIL+IV
Sbjct: 61 LEKAKNILQHCSECSKLYLAITGDAVLLKFEKAKSALIDSLRRVEDIVPSSIGSQILDIV 120
Query: 121 NELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALT 180
ELE F LDPSEK+VGD IIALLQQG+KF++ +D+ ELE FHQAATRL ITSSR+AL
Sbjct: 121 GELEHTKFLLDPSEKEVGDRIIALLQQGKKFDNGSDSTELEIFHQAATRLSITSSRSALA 180
Query: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTIQC 240
ERRALKK+I+RARVEEDKRKESIVAYLLHLMRKYSKLFRSEM+D+NDS STPCSPT Q
Sbjct: 181 ERRALKKVIDRARVEEDKRKESIVAYLLHLMRKYSKLFRSEMMDENDSPCSTPCSPTGQG 240
Query: 241 SFEDGVHNGNEHAFDRQLSKLCSFNFRP-NNRRSGQMPLPPEELRCPISLQLMYDPVIIA 299
ED V+ AF RQLSK S N++P N+R+SGQMP+PPEELRCPISLQLMYDPVIIA
Sbjct: 241 PNEDRVN-----AFGRQLSKFGSINYKPMNSRKSGQMPIPPEELRCPISLQLMYDPVIIA 295
Query: 300 SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPD 359
SGQTYER+CIEKW SDGH++CPKTQQ+LPHL LTPNYCVKGLIASWCE NG++VP PP+
Sbjct: 296 SGQTYERVCIEKWFSDGHNSCPKTQQQLPHLSLTPNYCVKGLIASWCEQNGITVPTGPPE 355
Query: 360 SLDLNYWRLALSE-ESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQED 418
SLDLNYWRLA+S+ ES NSKS + V C K+++VVPLE S TIE +N E
Sbjct: 356 SLDLNYWRLAMSDSESPNSKSVDSVGLCTPKDIRVVPLEESSTIESERQQKEKNNAPDEV 415
Query: 419 ESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFL 478
+S NV E YQD L ++++ E+L +KC +VE +R+LLKD+EEAR+ GANGFV A L+FL
Sbjct: 416 DSEINVLEGYQDILAIVDKEEDLAKKCKVVENVRILLKDNEEARILMGANGFVEAFLQFL 475
Query: 479 ESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYL 538
ESAV + N+ AQE GAMALFNLAVNNNRNKELML +GVIPLLEKMIS S S G ATALYL
Sbjct: 476 ESAVHDNNAAAQETGAMALFNLAVNNNRNKELMLTSGVIPLLEKMISCSQSQGPATALYL 535
Query: 539 NLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGII 598
NLS L+ AKP+IGSS AV F V L T+ QCKLDALHALYNLST NIP LLS+ II
Sbjct: 536 NLSCLEKAKPVIGSSQAVSFFVNLLLQDTKTQCKLDALHALYNLSTYSPNIPTLLSSNII 595
Query: 599 SGLQSLAVPGDPMWTEKXXXXXXXXXXXXXGKEEMNSTPGLVSGLATVLDTGELIEQEQA 658
LQ LA G+ +W EK GKEEM +T G++S LATVLDTG+ +EQEQA
Sbjct: 596 KSLQVLASTGNHLWIEKSLAVLLNLASSREGKEEMITTQGMISTLATVLDTGDTVEQEQA 655
Query: 659 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPPV 718
VSCL +LC G+E C QMVLQEGVIP+LVSISVNGS RGRDK+Q+LLMLFREQR RD P
Sbjct: 656 VSCLVILCTGSESCIQMVLQEGVIPSLVSISVNGSPRGRDKSQKLLMLFREQRHRDQPSP 715
Query: 719 DIGQQDDDSSEKLKPTYTPTPDHAPES--KPLCKSISRRK-MGKAFSFLWKSKSYSV 772
+ +++ P P P APES KPL KSISRRK M + FSFLWK KS+S+
Sbjct: 716 N--KEEAPRKTVSAPMAIPAPVSAPESEVKPLTKSISRRKTMTRPFSFLWK-KSHSI 769
|
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| TAIR|locus:2010424 PUB45 "plant U-box 45" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2601 (920.7 bits), Expect = 1.8e-270, P = 1.8e-270
Identities = 526/779 (67%), Positives = 617/779 (79%)
Query: 1 MDIAEVEENLFAASDAKLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIA 60
MD+ EVEEN FA DAKLHG MC LS +YCKI+S+FPSLEA+RPRSKSGIQALCSLH+
Sbjct: 1 MDVNEVEENFFAPGDAKLHGKMCNALSVIYCKIMSIFPSLEAARPRSKSGIQALCSLHVV 60
Query: 61 LEKAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIV 120
LEK KNIL HC+E SKLYLAITGDSV+LKFEKA+S+L +SLRRVEDIV QSIG Q+LEI+
Sbjct: 61 LEKVKNILRHCTESSKLYLAITGDSVVLKFEKAKSSLTDSLRRVEDIVQQSIGSQLLEIL 120
Query: 121 NELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALT 180
ELE FSLDP+EK++GD II LLQQG F S+DNNELE FHQAATRLGITSSRAALT
Sbjct: 121 MELENTEFSLDPAEKEIGDQIIGLLQQGGNFESSSDNNELEVFHQAATRLGITSSRAALT 180
Query: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGST--PCSPTI 238
ERR LKKLIERAR+E+DKRKESIVAYLLHLMRKYSKLFRSE+ DDNDSQGS+ PCSPTI
Sbjct: 181 ERRCLKKLIERARMEDDKRKESIVAYLLHLMRKYSKLFRSEIWDDNDSQGSSSLPCSPTI 240
Query: 239 QCSFEDGVHNGNEHAFDRQLSKLCSFNFRP--NNRRSGQMPLPPEELRCPISLQLMYDPV 296
Q S +D H AFDRQLSKL SFNFR NNRRS QM +PPEELRCPISLQLMYDPV
Sbjct: 241 QGSIDDA-HG---RAFDRQLSKLSSFNFRSCNNNRRSSQMSVPPEELRCPISLQLMYDPV 296
Query: 297 IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDS 356
IIASGQTYERICIEKW SDGH+TCPKT Q+L HLCLTPNYCVK LI+SWCE NGV VPD
Sbjct: 297 IIASGQTYERICIEKWFSDGHNTCPKTHQQLSHLCLTPNYCVKALISSWCEQNGVQVPDG 356
Query: 357 PPDSLDLNYWRLALS-EESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYA 415
PP+SLDLNYWRLALS EST+++S + V SCKLK++KVVPLE SGTI+E E+ Y
Sbjct: 357 PPESLDLNYWRLALSVSESTDTRSAKRVGSCKLKDVKVVPLEESGTIKEEA---CESEY- 412
Query: 416 QEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALL 475
QED+ + ER + L L + + L +KC +VEQIR+LLKDDEEAR+ G NG V ALL
Sbjct: 413 QEDQV--TLVERCTELLTTLTDVDTLRKKCRVVEQIRVLLKDDEEARILMGENGCVEALL 470
Query: 476 RFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATA 535
+FL SA+ E N+ AQ++GAMALFNLAV+NNRNKELMLA+G+IPLLE+M+ N +SHG+ TA
Sbjct: 471 QFLGSALNENNASAQKVGAMALFNLAVDNNRNKELMLASGIIPLLEEMLCNPHSHGSVTA 530
Query: 536 LYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSA 595
+YLNLS L++AKP+IGSS AVPF+V L +TE QCK+DALH+L++LST P NIP LLSA
Sbjct: 531 IYLNLSCLEEAKPVIGSSLAVPFMVNLLWTETEVQCKVDALHSLFHLSTYPPNIPCLLSA 590
Query: 596 GIISGLQSLAVPGDPMWTEKXXXXXXXXXXXXXGKEEMNSTPGLVSGLATVLDTGELIEQ 655
+++ LQSL + + WTEK GK+EM S P LVS L T+LDTGE EQ
Sbjct: 591 DLVNALQSLTISDEQRWTEKSLAVLLNLVLNEAGKDEMVSAPSLVSNLCTILDTGEPNEQ 650
Query: 656 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDH 715
EQAVS L +LCN +E C +MVLQEGVIP+LVSISVNG+ RGR++AQ+LL LFRE RQRD
Sbjct: 651 EQAVSLLLILCNHSEICSEMVLQEGVIPSLVSISVNGTQRGRERAQKLLTLFRELRQRDQ 710
Query: 716 PPVDIGQQDDDSSEKLKPTYTPTPDHAPESKPLCKSISRRKMGKAFSFLWKSKSYSVSQ 774
+ Q + +S + ++ E+KP CKS SR+KMG+AFSFLWKSKS+SV Q
Sbjct: 711 THLTEPQHTEVTSPE--DGFSVASAAVTETKPQCKSASRKKMGRAFSFLWKSKSFSVYQ 767
|
|
| TAIR|locus:2008813 AT1G67530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2564 (907.6 bits), Expect = 1.5e-266, P = 1.5e-266
Identities = 531/791 (67%), Positives = 613/791 (77%)
Query: 1 MDIAEVEENLFAASDAKLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIA 60
MD+ E+EENLFAASDAKLHGDMCK+LS + CK+LS+FPSLE +RPRSKSGIQALCSLHIA
Sbjct: 1 MDVTELEENLFAASDAKLHGDMCKELSGVLCKVLSIFPSLEGARPRSKSGIQALCSLHIA 60
Query: 61 LEKAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIV 120
LEKAKNIL HCSECSKLYLAITGD+VLLKFEKA+ AL + L+RVEDIVP SIG QILEIV
Sbjct: 61 LEKAKNILQHCSECSKLYLAITGDAVLLKFEKAKIALIDGLKRVEDIVPSSIGSQILEIV 120
Query: 121 NELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALT 180
ELE F LDPSEK+VGD IIALLQQG+KF++ NDN ELE FH+AATRL ITSSR AL
Sbjct: 121 GELENTRFMLDPSEKEVGDQIIALLQQGKKFDNCNDNTELEIFHRAATRLSITSSRVALA 180
Query: 181 ERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTIQC 240
ERRALKKLI+RAR EEDKRKESIVAYLLHLMRK SKLFRSE++D+NDS GS PCSP
Sbjct: 181 ERRALKKLIDRARAEEDKRKESIVAYLLHLMRKCSKLFRSEILDENDSPGSYPCSPN--- 237
Query: 241 SFEDGVHNGNEHAFDRQLSKLCSFNFRP-NNRRSGQMPLPPEELRCPISLQLMYDPVIIA 299
ED +G+ H F RQLS+ S N +P N+ SGQMP+PPEELRCPISLQLM DPVIIA
Sbjct: 238 --ED---HGSVHGFGRQLSRFGSLNDKPMNSINSGQMPVPPEELRCPISLQLMCDPVIIA 292
Query: 300 SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPD 359
SGQTYER+CIEKW SDGH+TCPKTQQ+LPH+ LTPN CVKGLIASWCE NG +P PP+
Sbjct: 293 SGQTYERVCIEKWFSDGHNTCPKTQQQLPHISLTPNNCVKGLIASWCEQNGTQIPSGPPE 352
Query: 360 SLDLNYWRLALSE-ESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQED 418
S DL+YWRLALS+ EST S+S + S KLK +K+VPLE +GT N E+ + +D
Sbjct: 353 SQDLDYWRLALSDSESTKSQSVNSIGSYKLKGVKIVPLEENGTTVVERQNTEESFVSDDD 412
Query: 419 E---SGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALL 475
+ S NV ERYQD L VLNE E L +KC +VE+IRLLLKDDEEAR+F GANGFV ALL
Sbjct: 413 DEEDSDINVLERYQDLLAVLNEEEGLEKKCKVVEKIRLLLKDDEEARIFMGANGFVEALL 472
Query: 476 RFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATA 535
RFL SAV + N+ AQ+ GAMALFNLAVNNNRNKELML +GVI LLEKMIS++ SHG+ATA
Sbjct: 473 RFLGSAVDDNNAAAQDSGAMALFNLAVNNNRNKELMLTSGVIRLLEKMISSAESHGSATA 532
Query: 536 LYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSA 595
LYLNLS LD+AK +IGSS AVPFLV+L + + E QCKLDALHALYNLST NIP LLS+
Sbjct: 533 LYLNLSCLDEAKSVIGSSQAVPFLVQLLQKEIETQCKLDALHALYNLSTYSPNIPALLSS 592
Query: 596 GIISGLQSL-AVPGDPMWTEKXXXXXXXXXXXXXGKEEMNSTPGLVSGLATVLDTGELIE 654
II LQ L A G+ +W EK GK+E S+ G++S LATVLD G+ E
Sbjct: 593 NIIKSLQGLLASTGENLWIEKSLAVLLNLASSQEGKDEAVSSQGMISSLATVLDMGDTTE 652
Query: 655 QEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ-R 713
QEQAVSCL +LCNG E C QMVLQEGVIP+LVSISVNG+ RGR+K+Q+LLMLFRE+RQ R
Sbjct: 653 QEQAVSCLLILCNGRESCIQMVLQEGVIPSLVSISVNGTPRGREKSQKLLMLFREERQQR 712
Query: 714 DHPPV--DIGQQDDDSSEKLK-P--TYTPTPDHAP----ESKPLCKSISRRK-MGKAFSF 763
D P D Q + + + L P + TP A E + L KS+SRRK M + FSF
Sbjct: 713 DQPSSNRDEPPQKEPARKSLSAPLSVHGSTPASASVQDYEPRVLSKSMSRRKSMARPFSF 772
Query: 764 LWKSKSYSVSQ 774
WK KSYSV +
Sbjct: 773 FWK-KSYSVRE 782
|
|
| TAIR|locus:2115365 AT4G36550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 348 (127.6 bits), Expect = 2.8e-56, Sum P(2) = 2.8e-56
Identities = 72/187 (38%), Positives = 115/187 (61%)
Query: 17 KLHGDMCKKLSALYCKILSVFPSLEASRPRSKSGIQALCSLHIALEKAKNILHHCSECSK 76
K+H MC +L L +I+ +FP +E +RP SGIQ LC LH AL+K K +L +CSE SK
Sbjct: 14 KMHSSMCLELKRLVDRIMRIFPDIEDARPGCSSGIQTLCLLHNALDKTKQLLQYCSESSK 73
Query: 77 LYLAITGDSVLLKFEKARSALAESLRRVEDIVPQSIGCQILEIVNELETIAFSLDPSEKQ 136
LY+A+TGD++L + +A+ +L + L + IVP + +I +IV +L + +L+ SE++
Sbjct: 74 LYMAVTGDAILARGSRAKKSLEQCLNDIRSIVPTILEIKISQIVQDLRSTQLTLEFSEEE 133
Query: 137 VGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALTERRALKKLIERARVEE 196
G I L+Q+ + S D E++ FH AA +L +++ A +TERR+LK + E +
Sbjct: 134 AGKAIRELMQKSTSSSASPD--EIKDFHYAALKLQLSTPEAIVTERRSLKIICEDHKQNS 191
Query: 197 DKRKESI 203
+SI
Sbjct: 192 FTHHQSI 198
|
|
| TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 313 (115.2 bits), Expect = 2.5e-51, Sum P(3) = 2.5e-51
Identities = 57/119 (47%), Positives = 80/119 (67%)
Query: 243 EDGVHNGNEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIASGQ 302
+D V +++ ++++ N + + S ++P+ P++ RCPISL++M DPVI++SGQ
Sbjct: 220 KDFVQTEDDNGEEQKVGVNSRSNGQTSTAASQKIPVIPDDFRCPISLEMMRDPVIVSSGQ 279
Query: 303 TYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPDSL 361
TYER CIEKW+ GHSTCPKTQQ L LTPNY ++ LIA WCE N + P PP SL
Sbjct: 280 TYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVLRSLIAQWCEANDIE-PPKPPSSL 337
|
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| TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 301 (111.0 bits), Expect = 4.1e-43, Sum P(3) = 4.1e-43
Identities = 89/265 (33%), Positives = 134/265 (50%)
Query: 450 QIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 509
++RLL K + + R+ G +G +V L+ L S +S QE AL NL++N+N K
Sbjct: 567 ELRLLAKHNMDNRIVIGNSGAIVLLVELLYST----DSATQENAVTALLNLSINDNNKKA 622
Query: 510 LMLAAGVIPL---LEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK 566
+ A + PL LE S + + AAT L+ +LS +++ K IG S A+ LV+L G
Sbjct: 623 IADAGAIEPLIHVLENGSSEAKENSAAT-LF-SLSVIEENKIKIGQSGAIGPLVDLL-GN 679
Query: 567 TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKXXXXXXXXXXX 626
+ K DA AL+NLS N ++ +G + L L P M +K
Sbjct: 680 GTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGM-VDKAVAVLANLATI 738
Query: 627 XXGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALV 686
G+ + G+ L V++ G +E A + L L + + C MVLQEG +P LV
Sbjct: 739 PEGRNAIGQEGGIPL-LVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLV 797
Query: 687 SISVNGSTRGRDKAQRLLMLFREQR 711
++S +G+ R R+KAQ LL FR QR
Sbjct: 798 ALSQSGTPRAREKAQALLSYFRNQR 822
|
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| UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 283 (104.7 bits), Expect = 9.6e-42, Sum P(3) = 9.6e-42
Identities = 47/75 (62%), Positives = 59/75 (78%)
Query: 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 339
P+E RCPISL+LM DPVI+++GQTYER CIEKW++ GH TCP TQQK+ LTPNY ++
Sbjct: 274 PDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLR 333
Query: 340 GLIASWCEMNGVSVP 354
LI+ WCE NG+ P
Sbjct: 334 SLISQWCETNGMEPP 348
|
|
| TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 1.5e-35, Sum P(3) = 1.5e-35
Identities = 61/172 (35%), Positives = 96/172 (55%)
Query: 224 DDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEEL 283
++ + Q S P + S + + DR L K+ + N +++S ++ +P + L
Sbjct: 191 EEEEKQSSPPLRRSSSISL--AYYLSKDADTDR-LDKMVNKN-TDESKKSDKLTIPVDFL 246
Query: 284 RCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIA 343
CP+SL+LM DPVI+A+GQTYER I++W+ G+ TCPKTQQKL + LTPNY ++ LI+
Sbjct: 247 -CPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNYVLRSLIS 305
Query: 344 SWCEMNGVSVPDS-----PPDSLDLNYWRLA---LSEESTNSKSNEI--VRS 385
WC + + P +S D++ R LS ST + N + +RS
Sbjct: 306 RWCAEHNIEQPAGYINGRTKNSGDMSVIRALVQRLSSRSTEDRRNAVSEIRS 357
|
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| UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
Identities = 113/401 (28%), Positives = 178/401 (44%)
Query: 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 336
P+ P+E RCPISL+LM DPVI++SGQTYER CI+KWL GH TCPKTQQ L H LTPN+
Sbjct: 226 PIIPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNF 285
Query: 337 CVKGLIASWCEMNGVSVPDSPPDSLDLNYWRLA-LSEESTNSKSNEIVRSCKLKEMKVVP 395
+K LI+ WCE NG+ +P + +S D + + S N + RS E +
Sbjct: 286 VLKSLISQWCEANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRL-RSGNQDEQRAAA 344
Query: 396 LEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLL 455
E+ + + N I A E+G +N+L+ + Q+ + + L +
Sbjct: 345 GEIRLLAKRNVNNRI--CIA---EAGAIPL-----LVNLLSSSDPRTQEHAVTALLNLSI 394
Query: 456 KDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAG 515
++ +A + + + ++ L++ E +E A LF+L+V + + A
Sbjct: 395 HENNKASIVD--SHAIPKIVEVLKTGSME----TRENAAATLFSLSVVDENKVTIGAAGA 448
Query: 516 VIPLLEKMISNS--NSHGAATALYLNLSFLDDAKPIIGSS----HAVPFLVELCKGKTEH 569
+ PL+ + S AATA++ NL K + H + FLV+ G +
Sbjct: 449 IPPLINLLCDGSPRGKKDAATAIF-NLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMID- 506
Query: 570 QCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKXXXXXXXXXXXXXG 629
+AL L L+ P + + I L + G P E
Sbjct: 507 ----EALSLLSILAGNPEGKIVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTE 562
Query: 630 KEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE 670
+ G+ L + +TG + +A S L L+ NE
Sbjct: 563 QTLAAKAAGVEDALKELSETGTDRAKRKASSILELMHQANE 603
|
|
| TAIR|locus:2181077 SAUR21 "SMALL AUXIN UP RNA 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 5.8e-28, Sum P(3) = 5.8e-28
Identities = 37/67 (55%), Positives = 48/67 (71%)
Query: 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 339
P + RCPI+L+LM DPV++A+GQTY+R I+ W+ GH+TCPKT Q L H L PN +K
Sbjct: 275 PADFRCPITLELMRDPVVVATGQTYDRESIDLWIQSGHNTCPKTGQVLKHTSLVPNRALK 334
Query: 340 GLIASWC 346
LI WC
Sbjct: 335 NLIVLWC 341
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O48700 | PUB6_ARATH | 6, ., 3, ., 2, ., - | 0.7065 | 0.9858 | 0.9909 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_Genewise1_v1.C_LG_X4827 | hypothetical protein (787 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 775 | |||
| smart00504 | 63 | smart00504, Ubox, Modified RING finger domain | 1e-26 | |
| pfam04564 | 73 | pfam04564, U-box, U-box domain | 2e-19 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 3e-06 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 3e-04 | |
| pfam13445 | 55 | pfam13445, zf-RING_LisH, RING-type zinc-finger, Li | 4e-04 | |
| pfam05804 | 708 | pfam05804, KAP, Kinesin-associated protein (KAP) | 0.002 |
| >gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-26
Identities = 36/64 (56%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 282 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGL 341
E CPISL++M DPVI+ SGQTYER IEKWL H T P T Q L H L PN +K
Sbjct: 1 EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSA 59
Query: 342 IASW 345
I W
Sbjct: 60 IQEW 63
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Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63 |
| >gnl|CDD|203049 pfam04564, U-box, U-box domain | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 2e-19
Identities = 32/70 (45%), Positives = 42/70 (60%)
Query: 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 339
P+E PI+L+LM DPVI+ SG TY+R IE+ L T P T++ L H L PN +K
Sbjct: 2 PDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLELK 61
Query: 340 GLIASWCEMN 349
I +W E N
Sbjct: 62 EKIDAWLEEN 71
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This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 468 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS 527
G + AL+ L S + Q A AL NL+ NN N + ++ AG +P L +++ +
Sbjct: 6 AGGLPALVSLLSS----SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 528 NSH---GAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCK 564
+ A AL NL+ +D K I+ + VP LV L
Sbjct: 62 DEEVVKAALWALR-NLAAGPEDNKLIVLEAGGVPKLVNLLD 101
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 509 ELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSF-LDDAKPIIGSSHAVPFLVELCK 564
E ++ AG +P L ++S+S+ AA AL NLS +D + + +P LV+L K
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWAL-SNLSAGNNDNIQAVVEAGGLPALVQLLK 59
Query: 565 GKTEHQCKLDALHALYNLSTIPSNIPN-LLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL 623
+ + AL AL NL+ P + +L AG + L +L + + + L NL
Sbjct: 60 -SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118
Query: 624 AA 625
A+
Sbjct: 119 AS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 4e-04
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 281 EELRCPISLQLMYD----PVIIASGQTYERICIEKWLSDGHS-TCP 321
CPIS ++M D PV++ G Y R +EK +G CP
Sbjct: 9 SIFVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCP 54
|
This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55 |
| >gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 466 GANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-NNRNKELMLAAGVIPLLEKMI 524
NG + LL+ C+ I LFNL+ + R K M+ G++P L ++
Sbjct: 324 EENGIIEKLLKLFP---CQHEDLLN-ITLRLLFNLSFDTGLRPK--MVNGGLLPKLVSLL 377
Query: 525 SNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583
N N HG A + +LS D AK + + +P L+++ T + L+ + NL+
Sbjct: 378 DNDNHHGIALCVLYHLSCDDKAKSMFAYTDCIPMLMKMVLEGTGERVDLELIALCINLA 436
|
This family consists of several eukaryotic kinesin-associated (KAP) proteins. Kinesins are intracellular multimeric transport motor proteins that move cellular cargo on microtubule tracks. It has been shown that the sea urchin KRP85/95 holoenzyme associates with a KAP115 non-motor protein, forming a heterotrimeric complex in vitro, called the Kinesin-II. Length = 708 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 775 | |||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.95 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.94 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.93 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.92 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.91 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.89 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.87 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 99.85 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.85 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.77 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.71 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 99.66 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.61 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.59 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.57 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.47 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.44 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.39 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.3 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.23 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.16 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.14 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.12 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.05 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 99.02 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 98.98 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 98.97 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.91 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 98.91 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.87 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 98.78 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.77 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 98.75 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.69 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.68 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 98.64 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.61 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.59 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.55 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.48 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 98.48 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.44 | |
| KOG0287 | 442 | consensus Postreplication repair protein RAD18 [Re | 98.41 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 98.41 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 98.37 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.31 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 98.29 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.28 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 98.28 | |
| KOG0823 | 230 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.27 | |
| KOG2177 | 386 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.26 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.24 | |
| KOG2042 | 943 | consensus Ubiquitin fusion degradation protein-2 [ | 98.23 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.19 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.15 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 98.13 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.11 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 98.09 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 98.07 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.01 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 98.0 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 97.98 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.94 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.87 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 97.86 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 97.85 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 97.8 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 97.8 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 97.77 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 97.75 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.75 | |
| KOG0311 | 381 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.73 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.72 | |
| COG5113 | 929 | UFD2 Ubiquitin fusion degradation protein 2 [Postt | 97.71 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.69 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 97.67 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.67 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.67 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 97.64 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.6 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.59 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 97.57 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.52 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.48 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 97.46 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.41 | |
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 97.37 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.37 | |
| KOG4159 | 398 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.34 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.28 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.27 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 97.25 | |
| KOG2660 | 331 | consensus Locus-specific chromosome binding protei | 97.15 | |
| COG5222 | 427 | Uncharacterized conserved protein, contains RING Z | 97.14 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.09 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 97.07 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 97.05 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 97.05 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.01 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 96.99 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 96.97 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 96.89 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 96.85 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 96.8 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.75 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.69 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 96.65 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 96.62 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.62 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.61 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.49 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.43 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.41 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.32 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 96.32 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.28 | |
| KOG0824 | 324 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.24 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 96.22 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 96.22 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 96.17 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.16 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.13 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 96.06 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 96.06 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 96.05 | |
| KOG1813 | 313 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.97 | |
| KOG0802 | 543 | consensus E3 ubiquitin ligase [Posttranslational m | 95.9 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 95.76 | |
| KOG2979 | 262 | consensus Protein involved in DNA repair [General | 95.7 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 95.68 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 95.66 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 95.57 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 95.56 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 95.56 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 95.56 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 95.54 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 95.41 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.39 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 95.31 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 95.28 | |
| KOG0826 | 357 | consensus Predicted E3 ubiquitin ligase involved i | 95.26 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 95.1 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.0 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 94.88 | |
| KOG4367 | 699 | consensus Predicted Zn-finger protein [Function un | 94.88 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 94.8 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 94.74 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 94.7 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 94.69 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 94.66 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 94.47 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 94.32 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 94.3 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 94.27 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 94.08 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 93.96 | |
| PF05659 | 147 | RPW8: Arabidopsis broad-spectrum mildew resistance | 93.95 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 93.8 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 93.79 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 93.73 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 93.57 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 93.38 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 93.28 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 93.21 | |
| KOG3113 | 293 | consensus Uncharacterized conserved protein [Funct | 93.17 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.11 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 93.0 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 92.96 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 92.91 | |
| PF02891 | 50 | zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 | 92.87 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 92.85 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 92.57 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 92.54 | |
| COG5627 | 275 | MMS21 DNA repair protein MMS21 [DNA replication, r | 92.01 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 91.95 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 91.69 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 91.65 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 91.49 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 91.2 | |
| KOG0883 | 518 | consensus Cyclophilin type, U box-containing pepti | 91.11 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 90.96 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 90.76 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 90.68 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 90.51 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 90.5 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 90.1 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 89.97 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 89.34 | |
| smart00744 | 49 | RINGv The RING-variant domain is a C4HC3 zinc-fing | 89.21 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 89.08 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 88.97 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 88.74 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 88.73 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 88.71 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 88.69 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 88.44 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 87.86 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 87.56 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 87.55 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 87.54 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 87.43 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 87.12 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 86.79 | |
| COG5109 | 396 | Uncharacterized conserved protein, contains RING Z | 86.6 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 86.42 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 85.75 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 85.71 | |
| PF11793 | 70 | FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. | 85.63 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 85.45 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 85.21 | |
| KOG0828 | 636 | consensus Predicted E3 ubiquitin ligase [Posttrans | 85.04 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 84.79 | |
| KOG3800 | 300 | consensus Predicted E3 ubiquitin ligase containing | 84.71 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 84.31 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 84.24 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 84.08 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 83.77 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 83.42 | |
| KOG1785 | 563 | consensus Tyrosine kinase negative regulator CBL [ | 83.32 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 83.18 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 83.09 | |
| PF14447 | 55 | Prok-RING_4: Prokaryotic RING finger family 4 | 82.25 | |
| KOG3161 | 861 | consensus Predicted E3 ubiquitin ligase [Posttrans | 82.24 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 82.04 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 82.02 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 81.9 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 81.37 | |
| COG5194 | 88 | APC11 Component of SCF ubiquitin ligase and anapha | 80.56 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 80.48 |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=286.98 Aligned_cols=280 Identities=21% Similarity=0.189 Sum_probs=246.4
Q ss_pred hhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhhHHhhc-cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc
Q 004073 425 FERYQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~-~~~~q~~Al~~L~~Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 502 (775)
...+..++..|.++. +.+.|..|+.+|+.+++.+++||..|++ .|+||.|+.+|.+ ++..+|++|+.+|.+++.
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s----g~~~vk~nAaaaL~nLS~ 87 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS----GTLGAKVNAAAVLGVLCK 87 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhc
Confidence 467889999998652 5688999999999999999999999997 9999999999988 789999999999999986
Q ss_pred cCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhccccc---CCcccccc-ccCchHHHHHhhcCCC--CHHHHHH
Q 004073 503 NNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL---DDAKPIIG-SSHAVPFLVELCKGKT--EHQCKLD 574 (775)
Q Consensus 503 ~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~---~~~k~~I~-~~g~i~~LV~LL~~~~--~~~~k~~ 574 (775)
+++++..|+..|++|+|+.+|++|+. +++|+++|++|+.+ ++++..|+ ..|+||+|+.+|+++. +..+++.
T Consensus 88 -~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~ 166 (2102)
T PLN03200 88 -EEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGL 166 (2102)
T ss_pred -CHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHH
Confidence 68899999999999999999999875 68899999999987 55665554 5899999999999872 2235677
Q ss_pred HHHHHHHhcCCCCChHH-HHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC-cccHHHHhhCCCcHHHHHHHhcCC-C
Q 004073 575 ALHALYNLSTIPSNIPN-LLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTG-E 651 (775)
Q Consensus 575 Al~aL~nLs~~~~nk~~-iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~-~e~~~~i~~~~g~I~~Lv~lL~~~-s 651 (775)
|+.+|+|||.+.+|+.. ++++|+|+.|+.+|.++++.+++.|+++|.+++.+ ++++..+++. |+|+.|+++|+++ +
T Consensus 167 Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIea-GaVP~LV~LL~sg~~ 245 (2102)
T PLN03200 167 LTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDA-GAVKQLLKLLGQGNE 245 (2102)
T ss_pred HHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHccCCC
Confidence 78999999999999865 58999999999999999999999999999999876 6688888874 9999999999875 5
Q ss_pred HHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCC---------hHHHHHHHHHHHHhHhc
Q 004073 652 LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGS---------TRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 652 ~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~---------~~~k~kA~~LL~~L~~~ 710 (775)
+.+|++|+++|.+||+++.+++..+++.|+|+.|+.++.... ...++.|.+.|.++.+.
T Consensus 246 ~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 246 VSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 689999999999999999999999999999999999887544 34589999999998864
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=280.54 Aligned_cols=282 Identities=21% Similarity=0.221 Sum_probs=244.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|.++ +...|..|++.|+++++++++++..|+++|+||+|+++|.+ .+..+|++|+|+|.|++.+.+
T Consensus 446 ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s----~~~~iqeeAawAL~NLa~~~~ 520 (2102)
T PLN03200 446 EGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET----GSQKAKEDSATVLWNLCCHSE 520 (2102)
T ss_pred CcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCcH
Confidence 4678899999988 89999999999999999999999999999999999999998 789999999999999987444
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCcc------------------------------------
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAK------------------------------------ 547 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k------------------------------------ 547 (775)
+.+..+.++|++|+|+++|++++. ++.|+++|++|+...+..
T Consensus 521 qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~ 600 (2102)
T PLN03200 521 DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDL 600 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHH
Confidence 445555588999999999999876 578999999986322111
Q ss_pred --ccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 004073 548 --PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 624 (775)
Q Consensus 548 --~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa 624 (775)
..+...|+++.|++||+++ +...++.|+++|.|++.+. +++..++.+|+|++|+.+|.+++..++.+++++|.||+
T Consensus 601 ~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~ 679 (2102)
T PLN03200 601 VREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALS 679 (2102)
T ss_pred HHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 0111368999999999999 9999999999999999654 57888999999999999999999999999999999999
Q ss_pred CCc--ccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHH
Q 004073 625 ASA--AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR 702 (775)
Q Consensus 625 ~~~--e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~ 702 (775)
.+. +.+..++. .|+|+.|+++|...+..+++.|+.+|.+|+... +.+..+.++|+|+.|+.++.+|+++.|++|++
T Consensus 680 ~~~~~~q~~~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~ 757 (2102)
T PLN03200 680 RSIKENRKVSYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAAR 757 (2102)
T ss_pred hCCCHHHHHHHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHH
Confidence 643 34456666 599999999999999999999999999999987 57788889999999999999999999999999
Q ss_pred HHHHhHhccCCCC
Q 004073 703 LLMLFREQRQRDH 715 (775)
Q Consensus 703 LL~~L~~~~~~~~ 715 (775)
.|..|....+.++
T Consensus 758 AL~~L~~~~~~~~ 770 (2102)
T PLN03200 758 ALAQLLKHFPVDD 770 (2102)
T ss_pred HHHHHHhCCChhH
Confidence 8888877666544
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-25 Score=242.10 Aligned_cols=281 Identities=18% Similarity=0.225 Sum_probs=252.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..||..|....+...|.+|+++|.++|..+.+.-..++++|++|.++.+|.+ .+..++++|+|+|.|++.+...
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s----~~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS----PSADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC----CcHHHHHHHHHHHhccccCChH
Confidence 466788888766578999999999999999999999999999999999999998 8999999999999999987788
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccc-cCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.|..+++.|++++|+.++..... ..+++|+|.||+.+..-...+.. ..++|.|+.+|.+. |+++..+|+|||.+|
T Consensus 186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST-DEEVLTDACWALSYL 264 (514)
T ss_pred HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 89999999999999999988764 57899999999998765555554 68999999999998 999999999999999
Q ss_pred cCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc-CCCHHHHHHHHH
Q 004073 583 STIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD-TGELIEQEQAVS 660 (775)
Q Consensus 583 s~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e~Av~ 660 (775)
+-+. +....++++|+++.|+++|...+..++..|+.++.|++.+.+.+...+...|+++.|..++. +....++..|++
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW 344 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence 9655 45666678999999999999988888899999999999988888877666799999999998 556669999999
Q ss_pred HHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccC
Q 004073 661 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 661 ~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
++.||+.++.++.+.++++|++|.|+.++.++..++|+.|++.+.++..-..
T Consensus 345 ~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 345 TISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999999999999999998764433
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-24 Score=223.62 Aligned_cols=278 Identities=21% Similarity=0.262 Sum_probs=250.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
++..|+...... ..++|+.++..|.+|+.. ++||..|+..|++.+|.++-++ .|..+|.++..+|+|+. +..+
T Consensus 127 Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLaks----kdirvqrnatgaLlnmT-hs~E 199 (550)
T KOG4224|consen 127 GLDLLILQMMTD-GVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKS----KDIRVQRNATGALLNMT-HSRE 199 (550)
T ss_pred ChHHHHHHhcCC-CcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhccc----chhhHHHHHHHHHHHhh-hhhh
Confidence 455666666666 789999999999999987 7899999999999999997776 89999999999999996 5788
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccC--chHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSH--AVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g--~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
||..++.+|++|.|+.+|++++. +..++.++.+++.+..++..+.+.+ .||.||.|++++ ++.++-.|.-||.||
T Consensus 200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnl 278 (550)
T KOG4224|consen 200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG-SDKVKCQAGLALRNL 278 (550)
T ss_pred hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC-ChHHHHHHHHHHhhh
Confidence 99999999999999999999886 5779999999999999999998876 999999999999 999999999999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCC-CHHHHHHHHHH
Q 004073 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG-ELIEQEQAVSC 661 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~-s~~~~e~Av~~ 661 (775)
+++.+-...++++|.+|.|++||+++.....-..++.+.|++-++-+..-|.+. |++.+||.+|+.+ +.++|-+|+.+
T Consensus 279 asdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~da-gfl~pLVrlL~~~dnEeiqchAvst 357 (550)
T KOG4224|consen 279 ASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADA-GFLRPLVRLLRAGDNEEIQCHAVST 357 (550)
T ss_pred cccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecc-cchhHHHHHHhcCCchhhhhhHHHH
Confidence 999999999999999999999999887777788899999999999888888875 9999999999976 55699999999
Q ss_pred HHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccCC
Q 004073 662 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 662 L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
|++|+..+..++..+.+.|+||+|..|+.++...+|..-...+..|.-.+..
T Consensus 358 LrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~ 409 (550)
T KOG4224|consen 358 LRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND 409 (550)
T ss_pred HHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence 9999988878899999999999999999999999998888777777655444
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=217.31 Aligned_cols=272 Identities=22% Similarity=0.278 Sum_probs=242.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHH
Q 004073 432 LNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELM 511 (775)
Q Consensus 432 l~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i 511 (775)
+.+|...++..+|+.+..+|-+++.. .+||..++.+|++|.||.+|++ .|..+|+.++++|.|++. +..+|+.+
T Consensus 172 ltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll~s----~d~dvqyycttaisnIaV-d~~~Rk~L 245 (550)
T KOG4224|consen 172 LTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLLKS----GDLDVQYYCTTAISNIAV-DRRARKIL 245 (550)
T ss_pred hHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhhcc----CChhHHHHHHHHhhhhhh-hHHHHHHH
Confidence 33466555889999999999999865 8899999999999999999999 899999999999999987 68889999
Q ss_pred HhhC--cHHHHHHHhccCChH--HHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC
Q 004073 512 LAAG--VIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS 587 (775)
Q Consensus 512 ~~~G--~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~ 587 (775)
+++| .+|.|+.++++++++ ..|.-+|.+|+...+|...|.+.|++|.||+||+++ .....-....++.|++.++.
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~-~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSP-MGPLILASVACIRNISIHPL 324 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCc-chhHHHHHHHHHhhcccccC
Confidence 9888 999999999999885 457778899999999999999999999999999988 66677778889999999999
Q ss_pred ChHHHHHcCcHHHHHHhccCCC-hHHHHHHHHHHHHHhCC-cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004073 588 NIPNLLSAGIISGLQSLAVPGD-PMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 665 (775)
Q Consensus 588 nk~~iv~aG~V~~Lv~LL~~~~-~~i~e~al~~L~nLa~~-~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~L 665 (775)
|-..++++|.+.+||++|..++ ..++-.|..+|+||+.+ ..++..|.+ .|+|+.+..++..++-.+|+..-+++..|
T Consensus 325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvqseisac~a~L 403 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQSEISACIAQL 403 (550)
T ss_pred cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 9999999999999999997754 55889999999999984 556667776 59999999999999999999999999999
Q ss_pred hcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccC
Q 004073 666 CNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 666 c~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
+..+ ..+..+.+.|.++.|+.+..+.+.+++.+|+..|-+|+...+
T Consensus 404 al~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 404 ALND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred Hhcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence 8776 578889999999999999999999999999999988875433
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=207.36 Aligned_cols=278 Identities=18% Similarity=0.200 Sum_probs=242.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
+..|+..+.+....-.|.+|+++|.+++.+.......++++|++|.++++|.+ .+..+.++++|+|.|++-+++..
T Consensus 116 VpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s----~~~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 116 VPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS----TEDDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred cHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcC----chHHHHHHHHHHhccccCCchhH
Confidence 44566666443255678999999999999887777778999999999999998 78899999999999999777778
Q ss_pred hHHHHhhCcHHHHHHHhccCCh----HHHHHHHHhcccccCCccccccc-cCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 508 KELMLAAGVIPLLEKMISNSNS----HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s~~~----~~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
|..+.+.|++.+|+.+|.+... ..++.|+|.||+....-...-.. +.++|.|.+|+.+. ++++..+|+|||..|
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~-D~evlvDA~WAiSYl 270 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR-DPEVLVDACWAISYL 270 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHh
Confidence 9999999999999999986543 37899999999987544332222 57899999999998 999999999999999
Q ss_pred cCCCCC-hHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHH
Q 004073 583 STIPSN-IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSC 661 (775)
Q Consensus 583 s~~~~n-k~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~ 661 (775)
+-.+.. ...+++.|+.+.|+++|.+.+..++..|+..+.|+....+.+..++...|+++.+..+|.+....++..|+++
T Consensus 271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT 350 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT 350 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence 977654 4556689999999999999999999999999999999988888777767999999999999888999999999
Q ss_pred HHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 662 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 662 L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
+.|+..++.+..+.+++...+|+|+.++....-.+|+.|++.+.+....
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999887654
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-21 Score=212.71 Aligned_cols=279 Identities=20% Similarity=0.200 Sum_probs=241.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhh-hHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEA-RVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~n-r~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
....+..+.+. +...|..+...+|.+....... -..+...|.||.||.+|... .++.+|..|+|+|.|+|++..+
T Consensus 68 ~~~~~~~~~S~-~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~---~~~~lq~eAAWaLTnIAsgtse 143 (514)
T KOG0166|consen 68 LELMLAALYSD-DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRD---DNPTLQFEAAWALTNIASGTSE 143 (514)
T ss_pred hHHHHHHHhCC-CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccC---CChhHHHHHHHHHHHHhcCchh
Confidence 45667778888 8888999999999988653322 22344459999999999862 5689999999999999998888
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC-CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
.-..++++|++|.++.+|.+++. ++.|+|+|.|++.+. .+|..+...|++++|+.++...........+.|+|.|||
T Consensus 144 ~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC 223 (514)
T ss_pred hccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 88889999999999999999886 588999999999864 678888899999999999998733478999999999999
Q ss_pred CCCCChHHHHH-cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004073 584 TIPSNIPNLLS-AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 584 ~~~~nk~~iv~-aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
.+..-...+.. ..++|.|..++.+.+..+...|+|+|.+|+..+..+..++...|+++.||++|...++.++-.|++++
T Consensus 224 rgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai 303 (514)
T KOG0166|consen 224 RGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI 303 (514)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence 88765555444 77999999999999999999999999999987777766665579999999999999999999999999
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhh-cCChHHHHHHHHHHHHhHhc
Q 004073 663 FLLCNGNEKCCQMVLQEGVIPALVSISV-NGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~-~g~~~~k~kA~~LL~~L~~~ 710 (775)
.|+..++....+.++..|+++.|..|+. +.....|+.|++++.++..-
T Consensus 304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG 352 (514)
T KOG0166|consen 304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAG 352 (514)
T ss_pred cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999888 56777899999999998753
|
|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-22 Score=168.34 Aligned_cols=72 Identities=47% Similarity=0.815 Sum_probs=63.9
Q ss_pred CCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004073 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNG 350 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~ 350 (775)
+|++|+||||+++|+|||++++||||||.+|++|+..++.+||.|+++++..+|+||..||+.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 599999999999999999999999999999999999989999999999999999999999999999999985
|
Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A .... |
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.5e-21 Score=196.16 Aligned_cols=277 Identities=17% Similarity=0.172 Sum_probs=236.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~-~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
..++.+...|-+. +.+.|..|+.+.|.+... ....-..+.++|.+|.+|.|+... .....|-.|+|+|.|++++.
T Consensus 71 ~elp~lt~~l~Sd-Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~---q~~mlqfEAaWalTNiaSGt 146 (526)
T COG5064 71 SELPQLTQQLFSD-DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI---QRDMLQFEAAWALTNIASGT 146 (526)
T ss_pred hhhHHHHHHHhhh-HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhc---chhHHHHHHHHHHhhhccCc
Confidence 4567888888888 999999999999988754 333445678899999999999652 45678899999999999866
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC-CccccccccCchHHHHHhhcCC-CCHHHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGK-TEHQCKLDALHALY 580 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~~~-~~~~~k~~Al~aL~ 580 (775)
......++++|++|.++.+|.++.. ++.|+|+|.|++.+. .++..+...|++.+|+.+|.+. .+.....++.|+|.
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLS 226 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLS 226 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHH
Confidence 6666667899999999999998875 688999999999875 5788888999999999999865 34588999999999
Q ss_pred HhcCCCC---ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHH
Q 004073 581 NLSTIPS---NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ 657 (775)
Q Consensus 581 nLs~~~~---nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~ 657 (775)
|||.... +-..+ .-++|.|..|+...++.+.-.|+|+|..|+..+..+..++-..|+-..||++|.+.+..++..
T Consensus 227 NlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtP 304 (526)
T COG5064 227 NLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTP 304 (526)
T ss_pred HhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCH
Confidence 9996432 22222 237899999999999999999999999999988776655555699999999999999999999
Q ss_pred HHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 658 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 658 Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
|++...|+..++....+.+++.|+++.+..|+.+...++|+.|++.+.++.
T Consensus 305 alR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT 355 (526)
T COG5064 305 ALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT 355 (526)
T ss_pred HHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccc
Confidence 999999999998889999999999999999999999999999999887764
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-17 Score=191.20 Aligned_cols=278 Identities=20% Similarity=0.245 Sum_probs=232.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|.++ +.+....++..|+.|+-. .+|+..|++.|+|+.|++++.+ .+..++..++++|+|||. +.+
T Consensus 291 iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s----~~~~l~~~aLrlL~NLSf-d~~ 363 (708)
T PF05804_consen 291 IVSLLVKCLDRE-NEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPS----ENEDLVNVALRLLFNLSF-DPE 363 (708)
T ss_pred CHHHHHHHHcCC-CHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcC----CCHHHHHHHHHHHHHhCc-CHH
Confidence 455677778777 899999999999999876 5799999999999999999998 788999999999999986 788
Q ss_pred hhHHHHhhCcHHHHHHHhccCChHHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 004073 507 NKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP 586 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~ 586 (775)
+|..|++.|++|.|+.+|..++.+..+.++|++||.++++|..+...+++|.|+++|-++.+.++...++.++.|||.++
T Consensus 364 ~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 364 LRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK 443 (708)
T ss_pred HHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence 99999999999999999998877788999999999999999999999999999998876646777888999999999999
Q ss_pred CChHHHHHcCcHHHHHHhc-cC-------------------------------------CChHHHHHHHHHHHHHhCCcc
Q 004073 587 SNIPNLLSAGIISGLQSLA-VP-------------------------------------GDPMWTEKSLAVLLNLAASAA 628 (775)
Q Consensus 587 ~nk~~iv~aG~V~~Lv~LL-~~-------------------------------------~~~~i~e~al~~L~nLa~~~e 628 (775)
.|...+.+.|+++.|++.. .. .+..+.-+++++|+||...+.
T Consensus 444 rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~l 523 (708)
T PF05804_consen 444 RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDL 523 (708)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCc
Confidence 9999999988998887632 11 133455679999999998888
Q ss_pred cHHHHhhCCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC--ChHHHHHHHHHH
Q 004073 629 GKEEMNSTPGLVSGLATVLDTG--ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG--STRGRDKAQRLL 704 (775)
Q Consensus 629 ~~~~i~~~~g~I~~Lv~lL~~~--s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g--~~~~k~kA~~LL 704 (775)
.+..++...+.+|.|.++|..+ .++..-.++..+..+|... .+...+.+.|+++.|+.|+... +++.--.....+
T Consensus 524 d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~-~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f 602 (708)
T PF05804_consen 524 DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP-ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVF 602 (708)
T ss_pred CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH-HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 8899988779999999999865 4567778888888888654 7888889999999999988764 455554444444
Q ss_pred HHhHhccC
Q 004073 705 MLFREQRQ 712 (775)
Q Consensus 705 ~~L~~~~~ 712 (775)
..|-.+.+
T Consensus 603 ~~ll~h~~ 610 (708)
T PF05804_consen 603 YQLLFHEE 610 (708)
T ss_pred HHHHcChH
Confidence 44444433
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-16 Score=184.33 Aligned_cols=216 Identities=21% Similarity=0.235 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhc
Q 004073 487 SYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK 564 (775)
Q Consensus 487 ~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~ 564 (775)
..+...++.+|+|++. +.+++..|++.|+++.|+++|++++. ...++++|.+||...+||..+++.|+|++|++++.
T Consensus 263 eqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 3455678889999985 78899999999999999999998875 35688899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHH
Q 004073 565 GKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLA 644 (775)
Q Consensus 565 ~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv 644 (775)
++ +..+...|+++|+|||.++++|..|++.|+||.|+.+|.+++.. ..|+.+|.+|+..+++|..+..+ ++|+.|+
T Consensus 342 s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~--~val~iLy~LS~dd~~r~~f~~T-dcIp~L~ 417 (708)
T PF05804_consen 342 SE-NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNFR--EVALKILYNLSMDDEARSMFAYT-DCIPQLM 417 (708)
T ss_pred CC-CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchH--HHHHHHHHHhccCHhhHHHHhhc-chHHHHH
Confidence 98 99999999999999999999999999999999999999876544 78999999999999999988876 8999999
Q ss_pred HHhcCC-CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 645 TVLDTG-ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 645 ~lL~~~-s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
++|..+ ++.++..+++++.||+... .+.+.+.+.|+++.|+.......+. -..+++|+++.+.
T Consensus 418 ~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 418 QMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHD 481 (708)
T ss_pred HHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcC
Confidence 987754 5566667888889988876 7889999999999999777655432 2336777777765
|
|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.2e-17 Score=132.49 Aligned_cols=63 Identities=57% Similarity=0.919 Sum_probs=60.5
Q ss_pred ccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 004073 282 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASW 345 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~ 345 (775)
+|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|+++++..+++||..|++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 77999999999999999999999999998
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. |
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.5e-15 Score=174.31 Aligned_cols=265 Identities=18% Similarity=0.160 Sum_probs=222.1
Q ss_pred HHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccC--------CCHHHHHHHHHHHHHhhccCCchhHHHHh-hCc
Q 004073 446 NIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCE--------RNSYAQEIGAMALFNLAVNNNRNKELMLA-AGV 516 (775)
Q Consensus 446 ~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~--------~d~~~qe~A~~aL~nLs~~~~~nk~~i~~-~G~ 516 (775)
.|+..|-.+.. +++.|..|.+.|++..+-.||.-.+.- ..-.++..|.++|.||..++..||..+.. .|+
T Consensus 317 aA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 317 AALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 55555555554 589999999999999999988643211 23467899999999999988889988875 689
Q ss_pred HHHHHHHhccCCh--HHHHHHHHhcccccC--CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC-CCChHH
Q 004073 517 IPLLEKMISNSNS--HGAATALYLNLSFLD--DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPN 591 (775)
Q Consensus 517 i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~--~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~-~~nk~~ 591 (775)
+..||..|.+... .+.-+.+|.||+... ..|..+.+.|-+.+|+..--........+..+.|||||+.+ .+||..
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~ 475 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE 475 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence 9999999998774 466888999999853 34667777899999987654433667899999999999964 589999
Q ss_pred HHH-cCcHHHHHHhccC----CChHHHHHHHHHHHHHhC----CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004073 592 LLS-AGIISGLQSLAVP----GDPMWTEKSLAVLLNLAA----SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 592 iv~-aG~V~~Lv~LL~~----~~~~i~e~al~~L~nLa~----~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
|.. -|++..||.+|.. ....+.|.+-+||.|+++ +++.|.-+.++ .|+..|+..|++.+-.+-.+++++|
T Consensus 476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~-NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH-NCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh-hHHHHHHHHhhhcceEEeecchhhh
Confidence 998 7999999999864 347889999999999755 66666666665 9999999999999999999999999
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccC
Q 004073 663 FLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
|||...+++..+++++.|+|+.|..|+.+.+..+-+.+++.|++|-.+++
T Consensus 555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999988883
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-13 Score=141.49 Aligned_cols=273 Identities=13% Similarity=0.139 Sum_probs=228.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhh
Q 004073 435 LNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAA 514 (775)
Q Consensus 435 L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~ 514 (775)
|.+..+...-.+++.+|-.+....++ +.++-+...++.+|.... ++.++-..++..+..-+..++.||..+++.
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~--~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~ 188 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKV--ESEEVTLLTLQWLQKACIMHEVNRQLFMEL 188 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 34444778888999999999987764 557788899999997533 566777778888888777889999999999
Q ss_pred CcHHHHHHHhcc-CCh--HHHHHHHHhcccccCCcccc----------ccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 515 GVIPLLEKMISN-SNS--HGAATALYLNLSFLDDAKPI----------IGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 515 G~i~~Lv~lL~s-~~~--~~~AaaaL~~Ls~~~~~k~~----------I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
++++.+...|.. |.+ ...+++++.-|...|+.|.. |...|++..|++.|.-+.++.....++.+|..
T Consensus 189 ~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~ 268 (461)
T KOG4199|consen 189 KILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKA 268 (461)
T ss_pred hHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHH
Confidence 999999988865 333 36688889888888776654 44467889999999988889999999999999
Q ss_pred hcCCCCChHHHHHcCcHHHHHHhccCC----ChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc--CCCHHHH
Q 004073 582 LSTIPSNIPNLLSAGIISGLQSLAVPG----DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD--TGELIEQ 655 (775)
Q Consensus 582 Ls~~~~nk~~iv~aG~V~~Lv~LL~~~----~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~--~~s~~~~ 655 (775)
|+..++-+..++++|++..|++++.+. +..+...++..|..|+.++..+..|++. |+.+.++.++. ..+|.+-
T Consensus 269 lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~-gg~~~ii~l~~~h~~~p~Vi 347 (461)
T KOG4199|consen 269 LAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEK-GGLDKIITLALRHSDDPLVI 347 (461)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHh-cChHHHHHHHHHcCCChHHH
Confidence 999999999999999999999999762 2345578999999999999999999996 99999999886 4789999
Q ss_pred HHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc-C-ChHHHHHHHHHHHHhHhccCCC
Q 004073 656 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-G-STRGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 656 e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~-g-~~~~k~kA~~LL~~L~~~~~~~ 714 (775)
+.++.++..||-.++++...+++.|+-...++-+.. + ...++++|+.++|++....+..
T Consensus 348 ~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~ 408 (461)
T KOG4199|consen 348 QEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN 408 (461)
T ss_pred HHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999999988887766554 3 4567899999999998665544
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-14 Score=162.76 Aligned_cols=280 Identities=20% Similarity=0.171 Sum_probs=223.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.....+.+|.+. +..+|-.|+..|..++..+.+.|..+.+.|+|+.||.+|.+ .+..+|.+|+++|.||......
T Consensus 234 ~lpe~i~mL~~q-~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~----~~~evq~~acgaLRNLvf~~~~ 308 (717)
T KOG1048|consen 234 TLPEVISMLMSQ-DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDH----RNDEVQRQACGALRNLVFGKST 308 (717)
T ss_pred ccHHHHHHHhcc-ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcC----CcHHHHHHHHHHHHhhhcccCC
Confidence 466778889888 89999999999999999999999999999999999999998 7899999999999999876665
Q ss_pred --hhHHHHhhCcHHHHHHHhcc-CC-h-HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCC-------------C
Q 004073 507 --NKELMLAAGVIPLLEKMISN-SN-S-HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT-------------E 568 (775)
Q Consensus 507 --nk~~i~~~G~i~~Lv~lL~s-~~-~-~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~-------------~ 568 (775)
||..|.+.++||.++++|+. ++ + ++..+++|.||+..|..|..|. ..++..|..-+-.+. +
T Consensus 309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~ 387 (717)
T KOG1048|consen 309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAED 387 (717)
T ss_pred cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHH-HHHHHHHHHhhcccccccCCCCccccccc
Confidence 99999999999999999985 33 2 6889999999999988888776 456666665553221 2
Q ss_pred HHHHHHHHHHHHHhcC-CCCChHHHHH-cCcHHHHHHhcc------CCChHHHHHHHHHHHHHhCCcc------------
Q 004073 569 HQCKLDALHALYNLST-IPSNIPNLLS-AGIISGLQSLAV------PGDPMWTEKSLAVLLNLAASAA------------ 628 (775)
Q Consensus 569 ~~~k~~Al~aL~nLs~-~~~nk~~iv~-aG~V~~Lv~LL~------~~~~~i~e~al~~L~nLa~~~e------------ 628 (775)
..+..++..+|.|+++ ..+.|.+|.+ .|.|..|+..+. +.+...+|.|+.+|.||+-.-+
T Consensus 388 ~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~ 467 (717)
T KOG1048|consen 388 STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA 467 (717)
T ss_pred ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence 5688899999999997 6678888888 899999999875 2355667999999999964211
Q ss_pred -------------------cHH-HHh---------------------hCCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhh
Q 004073 629 -------------------GKE-EMN---------------------STPGLVSGLATVLD-TGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 629 -------------------~~~-~i~---------------------~~~g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc 666 (775)
.+. ... -++.+|..-..+|. +..+.+.|.++++|.||+
T Consensus 468 ~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNlt 547 (717)
T KOG1048|consen 468 NIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLT 547 (717)
T ss_pred cccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhh
Confidence 000 000 01122333333444 467899999999999999
Q ss_pred cCC----hHhHHHH-HHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccC
Q 004073 667 NGN----EKCCQMV-LQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 667 ~~~----~~~~~~v-~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
.+. ...+..+ .++.+.+.|+.|+.++++++.+-++.+|++|+....
T Consensus 548 A~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r 598 (717)
T KOG1048|consen 548 AGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR 598 (717)
T ss_pred ccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch
Confidence 653 2345555 788899999999999999999999999999986543
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.1e-12 Score=130.65 Aligned_cols=264 Identities=13% Similarity=0.110 Sum_probs=216.8
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC---------chhHH
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN---------RNKEL 510 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~---------~nk~~ 510 (775)
+.++-...+.-++.-+-.++.||+.+.+.|+.+.+...|... ....+.+.+.+++..|...++ .....
T Consensus 160 ~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~---gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ 236 (461)
T KOG4199|consen 160 SEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNRE---GKTRTVRELYDAIRALLTDDDIRVVFGQAHGHART 236 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHccc---CccHHHHHHHHHHHHhcCCCceeeecchhhHHHHH
Confidence 677888888888888888999999999999999999888652 233677888999999865333 23455
Q ss_pred HHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCC---HHHHHHHHHHHHHhcC
Q 004073 511 MLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTE---HQCKLDALHALYNLST 584 (775)
Q Consensus 511 i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~---~~~k~~Al~aL~nLs~ 584 (775)
|+..|++..|+..|..+-. -..+..+|..|+..++....|.+.|++..|++++.+... ....+.++..|..|+.
T Consensus 237 ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG 316 (461)
T KOG4199|consen 237 IAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG 316 (461)
T ss_pred HHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC
Confidence 7788899999999986532 467888899999999999999999999999999987312 3356788999999999
Q ss_pred CCCChHHHHHcCcHHHHHHhcc--CCChHHHHHHHHHHHHHhC-CcccHHHHhhCCCcHHHHHHHhcC--CCHHHHHHHH
Q 004073 585 IPSNIPNLLSAGIISGLQSLAV--PGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDT--GELIEQEQAV 659 (775)
Q Consensus 585 ~~~nk~~iv~aG~V~~Lv~LL~--~~~~~i~e~al~~L~nLa~-~~e~~~~i~~~~g~I~~Lv~lL~~--~s~~~~e~Av 659 (775)
++++|..+|+.|+.+.++.++. ..++.+.+.+++++..||- .+++-..+++. |+-...|..|+. .-..+|.+|+
T Consensus 317 ~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~-G~a~~avqAmkahP~~a~vQrnac 395 (461)
T KOG4199|consen 317 SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEA-GAADLAVQAMKAHPVAAQVQRNAC 395 (461)
T ss_pred CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhc-chHHHHHHHHHhCcHHHHHHHHHH
Confidence 9999999999999999999763 4688999999999999986 66777777774 777888888985 3457899999
Q ss_pred HHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 660 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
..+.||..++.+++..++..| +..|+......++..+..|...||-|.
T Consensus 396 ~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 396 NMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 999999999878888877775 777887777777778888888888764
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-12 Score=146.81 Aligned_cols=283 Identities=17% Similarity=0.119 Sum_probs=216.8
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh--hhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhh-
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE--ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA- 501 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~--nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs- 501 (775)
..+|..+|..|.+. +.++|+.|+.+||+|.-++.. |+..|.+.|+|+.|+++|... .|.++++....+|.||+
T Consensus 274 lggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t---~D~ev~e~iTg~LWNLSS 349 (717)
T KOG1048|consen 274 LGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHT---QDDEVRELITGILWNLSS 349 (717)
T ss_pred hccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhh---cchHHHHHHHHHHhcccc
Confidence 35678889999988 999999999999999976554 999999999999999999864 35555555555555555
Q ss_pred -----------------------------------------------------ccCCchhHHHHh-hCcHHHHHHHhccC
Q 004073 502 -----------------------------------------------------VNNNRNKELMLA-AGVIPLLEKMISNS 527 (775)
Q Consensus 502 -----------------------------------------------------~~~~~nk~~i~~-~G~i~~Lv~lL~s~ 527 (775)
....+.|..|.+ .|.|..|+.++++.
T Consensus 350 ~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~ 429 (717)
T KOG1048|consen 350 NDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTA 429 (717)
T ss_pred hhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHH
Confidence 223345677765 68899999888641
Q ss_pred ------C--hHHHHHHHHhcccccCC------c---------------------------cc-------------c----
Q 004073 528 ------N--SHGAATALYLNLSFLDD------A---------------------------KP-------------I---- 549 (775)
Q Consensus 528 ------~--~~~~AaaaL~~Ls~~~~------~---------------------------k~-------------~---- 549 (775)
+ ..++++.+|.||+.--+ + +. .
T Consensus 430 i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pk 509 (717)
T KOG1048|consen 430 IQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPK 509 (717)
T ss_pred HHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCC
Confidence 1 24889999999985211 0 00 0
Q ss_pred ----ccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC-----ChHHH-HHcCcHHHHHHhccCCChHHHHHHHHH
Q 004073 550 ----IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS-----NIPNL-LSAGIISGLQSLAVPGDPMWTEKSLAV 619 (775)
Q Consensus 550 ----I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~-----nk~~i-v~aG~V~~Lv~LL~~~~~~i~e~al~~ 619 (775)
+-...+|.+=..+|....+....++++.||-||+.... .+..+ .+..++++|++||..++..++..++.+
T Consensus 510 G~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~ 589 (717)
T KOG1048|consen 510 GSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGA 589 (717)
T ss_pred CceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHH
Confidence 00011222323334433377899999999999985443 34444 567899999999999999999999999
Q ss_pred HHHHhCCcccHHHHhhCCCcHHHHHHHhcCC------CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC-
Q 004073 620 LLNLAASAAGKEEMNSTPGLVSGLATVLDTG------ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG- 692 (775)
Q Consensus 620 L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~------s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g- 692 (775)
|.||+.+..++..|.. ++++.||+.|..+ +.++-..++.+|+++...+..+...+.+.+++++|+.|..+.
T Consensus 590 LrNls~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~ 667 (717)
T KOG1048|consen 590 LRNLSRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQH 667 (717)
T ss_pred HhhhccCchhhhhhhc--chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccC
Confidence 9999999999999884 7999999999753 357788889999999999999999999999999999888774
Q ss_pred ChHHHHHHHHHHHHhHhccCC
Q 004073 693 STRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 693 ~~~~k~kA~~LL~~L~~~~~~ 713 (775)
+++.-+.|..+|..|+.+.+=
T Consensus 668 S~k~~kaAs~vL~~lW~y~eL 688 (717)
T KOG1048|consen 668 SPKEFKAASSVLDVLWQYKEL 688 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 568888899999888766543
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.6e-12 Score=131.10 Aligned_cols=191 Identities=23% Similarity=0.215 Sum_probs=164.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|...+++.+|.+|+.++.+.+.. +.++..|.+.|+++.+..+|.+ +++.+++.|+.+|-|++. +.
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~----p~~~vr~~AL~aL~Nls~-~~ 85 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLND----PNPSVREKALNALNNLSV-ND 85 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCC----CChHHHHHHHHHHHhcCC-Ch
Confidence 56789999998776899999999999998764 6899999999999999999998 899999999999999986 67
Q ss_pred chhHHHHhhCcHHHHHHHhccCC--h--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 506 RNKELMLAAGVIPLLEKMISNSN--S--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~--~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
+|+..|-. .++.+...+.+.. + +..++.+|.+|+..+++...+. +.++.|+.||..| +..++..++++|.|
T Consensus 86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G-~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSG-SEKTKVQVLKVLVN 160 (254)
T ss_pred hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcC-ChHHHHHHHHHHHH
Confidence 77776533 5777776554432 2 4678899999999999988885 5799999999999 99999999999999
Q ss_pred hcCCCCChHHHHHcCcHHHHHHhccCC-ChHHHHHHHHHHHHHhCCc
Q 004073 582 LSTIPSNIPNLLSAGIISGLQSLAVPG-DPMWTEKSLAVLLNLAASA 627 (775)
Q Consensus 582 Ls~~~~nk~~iv~aG~V~~Lv~LL~~~-~~~i~e~al~~L~nLa~~~ 627 (775)
||.++.+...++.++++..++.|+... +..+...++.+..||..+-
T Consensus 161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999764 5777889999999997643
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=129.28 Aligned_cols=195 Identities=22% Similarity=0.235 Sum_probs=168.7
Q ss_pred hhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccc
Q 004073 465 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSF 542 (775)
Q Consensus 465 i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~ 542 (775)
+.+++.++.|+.+|... .|+.+|+.+..+|.|.+. .+.++..|.+.|+++.+..+|.+++. ++.|+.+|.|++.
T Consensus 8 ~l~~~~l~~Ll~lL~~t---~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~ 83 (254)
T PF04826_consen 8 ILEAQELQKLLCLLEST---EDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV 83 (254)
T ss_pred CcCHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC
Confidence 46778899999999863 799999999999999975 78899999999999999999999876 5789999999999
Q ss_pred cCCccccccccCchHHHHHhhcCC-CCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHH
Q 004073 543 LDDAKPIIGSSHAVPFLVELCKGK-TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLL 621 (775)
Q Consensus 543 ~~~~k~~I~~~g~i~~LV~LL~~~-~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~ 621 (775)
..+++..|- ..++.+.+.+.+. .+..++.+++++|.||+...+.+..+. +.++.|+.+|..++..++..++.+|.
T Consensus 84 ~~en~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 84 NDENQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred ChhhHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999885 3577777655443 467899999999999998887776664 47999999999999999999999999
Q ss_pred HHhCCcccHHHHhhCCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcC
Q 004073 622 NLAASAAGKEEMNSTPGLVSGLATVLDTG-ELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 622 nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~-s~~~~e~Av~~L~~Lc~~ 668 (775)
||+.++.....++.. .++..++.++... +.+....++.++.+|..+
T Consensus 160 nLS~np~~~~~Ll~~-q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 160 NLSENPDMTRELLSA-QVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HhccCHHHHHHHHhc-cchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 999999998888875 7899999999864 677889999999999753
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.5e-11 Score=128.58 Aligned_cols=256 Identities=19% Similarity=0.245 Sum_probs=199.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchh
Q 004073 429 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK 508 (775)
Q Consensus 429 ~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk 508 (775)
.-||.-|... +.+.-.-++.-|..|.-- .+|+..|.+.|.|+.|+++... .+++.....++.|+||+. +..++
T Consensus 307 ~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~----~h~dL~~~tl~LlfNlSF-D~glr 379 (791)
T KOG1222|consen 307 AMLVKALDRS-NSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPI----QHPDLRKATLMLLFNLSF-DSGLR 379 (791)
T ss_pred HHHHHHHccc-chHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCC----CCHHHHHHHHHHhhhccc-ccccc
Confidence 3455566655 666666666667766654 5799999999999999999988 789999999999999986 67899
Q ss_pred HHHHhhCcHHHHHHHhccCChHHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCC
Q 004073 509 ELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSN 588 (775)
Q Consensus 509 ~~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~n 588 (775)
..|+..|.+|.|+.+|.+.....-|+.+|+.+|+++..|.+++-..+|+.|.+.+-.+.+.++-.+.+..-.|||.+..|
T Consensus 380 ~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 380 PKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 99999999999999999988788899999999999999999999999999999887775555555555445688888888
Q ss_pred hHHHHHcCcHHHHHHh-cc-------------------------------------CCChHHHHHHHHHHHHHhCCcccH
Q 004073 589 IPNLLSAGIISGLQSL-AV-------------------------------------PGDPMWTEKSLAVLLNLAASAAGK 630 (775)
Q Consensus 589 k~~iv~aG~V~~Lv~L-L~-------------------------------------~~~~~i~e~al~~L~nLa~~~e~~ 630 (775)
...+++..++..|++. +. +.+....-+|+++|+||.-..-.+
T Consensus 460 aQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw 539 (791)
T KOG1222|consen 460 AQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDW 539 (791)
T ss_pred ceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH
Confidence 8777776666665552 21 112234457999999999988999
Q ss_pred HHHhhCCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC
Q 004073 631 EEMNSTPGLVSGLATVLDTG--ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG 692 (775)
Q Consensus 631 ~~i~~~~g~I~~Lv~lL~~~--s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g 692 (775)
..|+.+...||.+-..|..| ..+..-..+-.+..++. +..+...+..+|+|+.|++|+..+
T Consensus 540 ~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~ 602 (791)
T KOG1222|consen 540 AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQAC 602 (791)
T ss_pred HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhh
Confidence 99999999999999999865 22333333333344333 446777777889999999988765
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=137.63 Aligned_cols=273 Identities=16% Similarity=0.100 Sum_probs=207.0
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchh--------------ccCCCHHHHHHHHHHHHHhhccCC
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESA--------------VCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~--------------~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
+.+.+..|-.+|.++....++-+..=.+.-+++.|=++.... .+..+..-...|+.+|..+++ ++
T Consensus 251 ~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DE 329 (2195)
T KOG2122|consen 251 DKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DE 329 (2195)
T ss_pred hHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cH
Confidence 456788888999999887665544333333444333222210 000122223477888999986 78
Q ss_pred chhHHHHhhCcHHHHHHHhcc-----CC-h--------HHHHHHHHhcccccCC-ccccccc-cCchHHHHHhhcCCCCH
Q 004073 506 RNKELMLAAGVIPLLEKMISN-----SN-S--------HGAATALYLNLSFLDD-AKPIIGS-SHAVPFLVELCKGKTEH 569 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s-----~~-~--------~~~AaaaL~~Ls~~~~-~k~~I~~-~g~i~~LV~LL~~~~~~ 569 (775)
+.|..|-+-|++..|.++|.- +. + +..|.-+|.||...+. ||..+-. .|++..+|..|.+. ..
T Consensus 330 EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~-pe 408 (2195)
T KOG2122|consen 330 EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA-PE 408 (2195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC-hH
Confidence 899999999999999988742 21 1 2448888999998775 6776654 79999999999998 77
Q ss_pred HHHHHHHHHHHHhcCC-CCC-hHHHHHcCcHHHHHH-hccCCChHHHHHHHHHHHHHhC-CcccHHHHhhCCCcHHHHHH
Q 004073 570 QCKLDALHALYNLSTI-PSN-IPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLAT 645 (775)
Q Consensus 570 ~~k~~Al~aL~nLs~~-~~n-k~~iv~aG~V~~Lv~-LL~~~~~~i~e~al~~L~nLa~-~~e~~~~i~~~~g~I~~Lv~ 645 (775)
++...-+.+|.||+=. +.| +..+-+.|-|..|+. .|...........|.+||||+. +.+++..|+...|++..||.
T Consensus 409 eL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg 488 (2195)
T KOG2122|consen 409 ELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVG 488 (2195)
T ss_pred HHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHh
Confidence 8999999999999943 334 555667999999999 5665555666889999999977 67999999999999999999
Q ss_pred HhcCC----CHHHHHHHHHHHHHhhc---CChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccCCC
Q 004073 646 VLDTG----ELIEQEQAVSCLFLLCN---GNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 646 lL~~~----s~~~~e~Av~~L~~Lc~---~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~~~ 714 (775)
+|... .-.+-|+|-+||.|+.+ ....+++.+.+...+..|+..+++.+-.+--+|+..|++|..-...+
T Consensus 489 ~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D 564 (2195)
T KOG2122|consen 489 TLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED 564 (2195)
T ss_pred hccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH
Confidence 99843 45789999999999885 34578999999999999999999888888888888888886544443
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-10 Score=104.32 Aligned_cols=117 Identities=27% Similarity=0.274 Sum_probs=104.7
Q ss_pred ccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC-CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc
Q 004073 550 IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA 628 (775)
Q Consensus 550 I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~-~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e 628 (775)
+.+.|+++.|+++|.++ +...+..|+++|.+++.+ ++++..+++.|+++.|+++|.+.+..++..++++|.||+....
T Consensus 3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 44579999999999998 899999999999999987 6788899999999999999999999999999999999999875
Q ss_pred cHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004073 629 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 629 ~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
....+....|+++.|+++|...+..+++.|+.+|.+||.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 444443335999999999999999999999999999974
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.2e-09 Score=119.90 Aligned_cols=271 Identities=17% Similarity=0.195 Sum_probs=210.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 509 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~ 509 (775)
.+...|.+. +..+|.-++..|+.++.++......+.+.+.++.++..|.. +|..+...|+.+|.+++. +...-.
T Consensus 81 ~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~----~d~~Va~~A~~~L~~l~~-~~~~~~ 154 (503)
T PF10508_consen 81 FLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD----PDLSVAKAAIKALKKLAS-HPEGLE 154 (503)
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC----CcHHHHHHHHHHHHHHhC-CchhHH
Confidence 445577777 89999999999999998887777778889999999999988 899999999999999985 555666
Q ss_pred HHHhhCcHHHHHHHhccCCh--HHHHHHHHhccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 004073 510 LMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP 586 (775)
Q Consensus 510 ~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~ 586 (775)
.+...+.++.|..++...++ +-.+..++.+++.. ++....+...|.++.+++.|+++ |.-++.+|+..|..|+..+
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-DiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-DILVQLNALELLSELAETP 233 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHcCh
Confidence 67788889999999988554 56677777777654 45566666789999999999997 9999999999999999988
Q ss_pred CChHHHHHcCcHHHHHHhccCC--Ch---H-HHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHH
Q 004073 587 SNIPNLLSAGIISGLQSLAVPG--DP---M-WTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS 660 (775)
Q Consensus 587 ~nk~~iv~aG~V~~Lv~LL~~~--~~---~-i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~ 660 (775)
.+...+.+.|+++.|+.++.+. ++ . ..-..+....+++.... ..-+...+..+..|.+++.+.++..+..|+.
T Consensus 234 ~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~-~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~d 312 (503)
T PF10508_consen 234 HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSP-QEVLELYPAFLERLFSMLESQDPTIREVAFD 312 (503)
T ss_pred hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 9999999999999999988542 22 1 22234466677776421 1112222355666777778899999999999
Q ss_pred HHHHhhcCChHhHHHH-HHC-CCHHHH----HHhhhcCChHHHHHHHHHHHHhHh
Q 004073 661 CLFLLCNGNEKCCQMV-LQE-GVIPAL----VSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 661 ~L~~Lc~~~~~~~~~v-~~~-G~i~~L----v~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
+|..||+.. +....+ ... +.+... -....+++.+.|..+...|..+-.
T Consensus 313 tlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 313 TLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 999999766 455555 443 344444 455667888999999988887753
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=100.15 Aligned_cols=117 Identities=22% Similarity=0.233 Sum_probs=108.4
Q ss_pred HHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC-cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 004073 591 NLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN 669 (775)
Q Consensus 591 ~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~-~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 669 (775)
.+++.|+++.|+++|.+++..++..++.+|.+++.. ++.+..+... |+++.|+++|.+.++.++..|+++|.+|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEA-GGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 468899999999999998899999999999999998 6777787774 99999999999999999999999999999988
Q ss_pred hHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 670 EKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 670 ~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
+.....+.+.|+++.|+.++..++.++++.|..+|.+|.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 778888899999999999999999999999999999875
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.3e-09 Score=111.43 Aligned_cols=279 Identities=12% Similarity=0.081 Sum_probs=211.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCC---HHHHHHHHHHHHHhhccC
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERN---SYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d---~~~qe~A~~aL~nLs~~~ 504 (775)
++.|.+...+. +.++-.+..++|.+.+-++.++|..+.+.|+-..++++|+..+..++ ......+...|.|....+
T Consensus 89 le~Lrq~psS~-d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~ 167 (604)
T KOG4500|consen 89 LELLRQTPSSP-DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDS 167 (604)
T ss_pred HHHHHhCCCCC-cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCc
Confidence 33444444555 78899999999999999999999999999998888898876543333 344566678899998777
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh----HHHHHHHHhccccc-CC-ccccccccCchHHHHHhhcCCCCHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS----HGAATALYLNLSFL-DD-AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA 578 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~----~~~AaaaL~~Ls~~-~~-~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~a 578 (775)
+..+.++++.|+++.|..++.=+-. .+...+..+||... .+ .+.....+.....|+++|....+++..+.....
T Consensus 168 ~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fei 247 (604)
T KOG4500|consen 168 RELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEI 247 (604)
T ss_pred HHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHH
Confidence 7789999999999999998854321 35556666665442 22 244445567778888998876678889999999
Q ss_pred HHHhcCCCCChHHHHHcCcHHHHHHhccC-CChHHHHH-------HHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCC
Q 004073 579 LYNLSTIPSNIPNLLSAGIISGLQSLAVP-GDPMWTEK-------SLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG 650 (775)
Q Consensus 579 L~nLs~~~~nk~~iv~aG~V~~Lv~LL~~-~~~~i~e~-------al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~ 650 (775)
|...+.++..+..+++.|.+..+++++.. .+..-++. +......|...++.-..+...+..+..++..+.+.
T Consensus 248 la~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~ 327 (604)
T KOG4500|consen 248 LAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSD 327 (604)
T ss_pred HHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCC
Confidence 99999999999999999999999998865 22222233 33334444445555555655544788889999988
Q ss_pred CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhh-----cCChHHHHHHHHHHHHhH
Q 004073 651 ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV-----NGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 651 s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~-----~g~~~~k~kA~~LL~~L~ 708 (775)
+...+-.++-++.|+++.+ .++..+++.|.+..|+.++. .|+.+.+..+...||+|.
T Consensus 328 d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 328 DSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred chhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 8888888888999999988 67888889999999997653 367788888889999886
|
|
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-10 Score=86.39 Aligned_cols=39 Identities=36% Similarity=0.869 Sum_probs=31.1
Q ss_pred cccccccccCceecCCCCccchHHHHHHHhcCC---CCCCCC
Q 004073 285 CPISLQLMYDPVIIASGQTYERICIEKWLSDGH---STCPKT 323 (775)
Q Consensus 285 CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~---~~CP~t 323 (775)
||||+++|+|||+++|||+||+.||++|+.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999997532 469986
|
|
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-10 Score=111.48 Aligned_cols=61 Identities=26% Similarity=0.541 Sum_probs=53.4
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhc---------------CCCCCCCCCCCCCCCCCcccHH
Q 004073 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD---------------GHSTCPKTQQKLPHLCLTPNYC 337 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~---------------~~~~CP~t~~~l~~~~l~pn~~ 337 (775)
....++|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+.+++...++|.+.
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 345678999999999999999999999999999999842 2357999999999999999864
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5e-09 Score=113.74 Aligned_cols=197 Identities=21% Similarity=0.243 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcC
Q 004073 488 YAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKG 565 (775)
Q Consensus 488 ~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~ 565 (775)
.....|+..|+|++. +-..-..|...+.+..|++.|+..+. .......|..||..++||..+++.|.|..|++|+..
T Consensus 278 qLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 444668889999985 44456667888999999999987764 344666677899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHH
Q 004073 566 KTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLAT 645 (775)
Q Consensus 566 ~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~ 645 (775)
. +++.++..+..|+|||.+.+++.+||..|.+|.|+.+|.+.... .-|+.+|..++.....+.-+.-+ .||+.+++
T Consensus 357 ~-h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K~MfayT-dci~~lmk 432 (791)
T KOG1222|consen 357 Q-HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAKAMFAYT-DCIKLLMK 432 (791)
T ss_pred C-CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHHHHHHHH-HHHHHHHH
Confidence 8 99999999999999999999999999999999999999876554 56888999998887777777665 89999999
Q ss_pred HhcCCCHHHHHHH-HHHHHHhhcCChHhHHHHHHCCCHHHHHHhhh
Q 004073 646 VLDTGELIEQEQA-VSCLFLLCNGNEKCCQMVLQEGVIPALVSISV 690 (775)
Q Consensus 646 lL~~~s~~~~e~A-v~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~ 690 (775)
.+-.++...-..+ ++.-.|||-+. .+.+.+.+..++..|+...-
T Consensus 433 ~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~ 477 (791)
T KOG1222|consen 433 DVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAI 477 (791)
T ss_pred HHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHh
Confidence 8876544333333 33447788654 56777877778888876543
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-07 Score=107.07 Aligned_cols=280 Identities=15% Similarity=0.129 Sum_probs=207.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
+.+..++..|... +.++...|+..|..+++... ....+...+.+..|..++.. .+..++..+..++.+++..++
T Consensus 119 ~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~----~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 119 ELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQ----SSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred cHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcCH
Confidence 4455666677777 89999999999999998754 44567788889999999976 577888889999999987677
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCC-CCH----HHHHHHHHH
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK-TEH----QCKLDALHA 578 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~-~~~----~~k~~Al~a 578 (775)
+....+.+.|.++.++.-|++.+. +.+|+.+|..|+..+++...+.+.|+++.|+.++.+. .++ -..-..+..
T Consensus 193 ~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 193 EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 777778889999999999999664 5789999999999988988998899999999999754 122 122233355
Q ss_pred HHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHH-hhCCCcHHHHHH----HhcCCCHH
Q 004073 579 LYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM-NSTPGLVSGLAT----VLDTGELI 653 (775)
Q Consensus 579 L~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i-~~~~g~I~~Lv~----lL~~~s~~ 653 (775)
..+++........-.--..+..|.+++.+.+...+..|+.+|+.+++..+|+..+ ....+.+...++ ...++..+
T Consensus 273 ~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 273 FGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 6666665333222112335556666777888888999999999999999999999 544444444444 44567889
Q ss_pred HHHHHHHHHHHhhcCCh----Hh----HHHH---HHCCCHH-HHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 654 EQEQAVSCLFLLCNGNE----KC----CQMV---LQEGVIP-ALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 654 ~~e~Av~~L~~Lc~~~~----~~----~~~v---~~~G~i~-~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
.|..++.+|.++-.... +. .... ...+-.. .++.++..+=+++|-.|..+|+.+..+.
T Consensus 353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence 99999999999843211 11 1111 1123344 5668888888999999999999887664
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-09 Score=119.29 Aligned_cols=71 Identities=24% Similarity=0.480 Sum_probs=64.1
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004073 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 349 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 349 (775)
.+...|.||||+++|.+||+++|||+||..||..|+.. ...||.|+.++....+.+|+.|.++|+.|....
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 45578999999999999999999999999999999975 458999999998889999999999999996643
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-09 Score=109.48 Aligned_cols=76 Identities=36% Similarity=0.424 Sum_probs=71.9
Q ss_pred CCCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 004073 276 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGV 351 (775)
Q Consensus 276 ~~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~i 351 (775)
..++|+.++|.|++++|+|||+.|+|.||+|..|+.+++.-....|+|+.+|+...++||++|+..|..|...|+.
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w 280 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW 280 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence 3478999999999999999999999999999999999998778999999999999999999999999999999874
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-07 Score=102.02 Aligned_cols=280 Identities=15% Similarity=0.072 Sum_probs=203.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccC----CCHHHHHHHHHHHHHhhccC
Q 004073 429 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCE----RNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 429 ~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~----~d~~~qe~A~~aL~nLs~~~ 504 (775)
..+++.|.+. -.+...+.+-+|-.-+.+++..+-.++++|.++-++.++..-... ++...-..++....-+..+
T Consensus 226 ~~l~~ll~~~-v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG- 303 (604)
T KOG4500|consen 226 FMLLQLLPSM-VREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG- 303 (604)
T ss_pred HHHHHHHHHh-hccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC-
Confidence 3444445443 222233333444444456778888999999999999999752111 1112223333333333333
Q ss_pred CchhHHHHhhC-cHHHHHHHhccCChH--HHHHHHHhcccccCCccccccccCchHHHHHhhcC-----CCCHHHHHHHH
Q 004073 505 NRNKELMLAAG-VIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKG-----KTEHQCKLDAL 576 (775)
Q Consensus 505 ~~nk~~i~~~G-~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~-----~~~~~~k~~Al 576 (775)
++.-..+...+ ++..++..+.+.+.. ..++-++.|++..|++...+.+.|.+..|+.+|.. | +.+.+.+++
T Consensus 304 DeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdg-nV~~qhA~l 382 (604)
T KOG4500|consen 304 DESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDG-NVERQHACL 382 (604)
T ss_pred chHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCc-cchhHHHHH
Confidence 33433344444 888999999887764 45666678999999999999999999999999963 4 889999999
Q ss_pred HHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHHHhcCCCHH-H
Q 004073 577 HALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTGELI-E 654 (775)
Q Consensus 577 ~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~~~s~~-~ 654 (775)
.||.||...-.||..++.+|+++.++..+....+.++-+-+++|.-+....+ ...++..+...+..||+.-++.+-. +
T Consensus 383 sALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv 462 (604)
T KOG4500|consen 383 SALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGV 462 (604)
T ss_pred HHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchh
Confidence 9999999999999999999999999999988888888999999998877666 4456666766777777777665433 6
Q ss_pred HHHHHHHHHHhhcCC--hHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 655 QEQAVSCLFLLCNGN--EKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 655 ~e~Av~~L~~Lc~~~--~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
.-...+.|..+-+++ .+....+-+.|+|..++.+....+-..+..|.-.|..+....
T Consensus 463 ~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~y 521 (604)
T KOG4500|consen 463 AGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKY 521 (604)
T ss_pred hhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHh
Confidence 667778888887763 355677788899999999988888888888887776665443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.1e-07 Score=96.69 Aligned_cols=218 Identities=12% Similarity=0.022 Sum_probs=139.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 509 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~ 509 (775)
.+...+.+. +..+|..|+..|..+-..... ..-+++.|..++.. +.++.++..|+.+|.++... ....
T Consensus 58 ~l~~ll~~~-d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~---D~d~~VR~~A~~aLG~~~~~-~~~~- 125 (280)
T PRK09687 58 LAIELCSSK-NPIERDIGADILSQLGMAKRC------QDNVFNILNNLALE---DKSACVRASAINATGHRCKK-NPLY- 125 (280)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhc---CCCHHHHHHHHHHHhccccc-cccc-
Confidence 333344444 677777777777766432110 12345666665332 16777777888888777421 1111
Q ss_pred HHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC
Q 004073 510 LMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS 587 (775)
Q Consensus 510 ~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~ 587 (775)
...+++.+...+...+. +..|+.+|.. ++...+++.|+.+|++. +..++..|+.+|..+....
T Consensus 126 ---~~~a~~~l~~~~~D~~~~VR~~a~~aLg~----------~~~~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~~~- 190 (280)
T PRK09687 126 ---SPKIVEQSQITAFDKSTNVRFAVAFALSV----------INDEAAIPLLINLLKDP-NGDVRNWAAFALNSNKYDN- 190 (280)
T ss_pred ---chHHHHHHHHHhhCCCHHHHHHHHHHHhc----------cCCHHHHHHHHHHhcCC-CHHHHHHHHHHHhcCCCCC-
Confidence 12244555555555443 3445555532 23345788888888887 8888888888888873211
Q ss_pred ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004073 588 NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 588 nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
..+++.|+.+|.+.+..++..|+..|..+-. ..+|+.|++.|..+. .+..|+.+|..+-.
T Consensus 191 -------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 191 -------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred -------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 1466778888888888888888888876421 357888888887765 45566666666544
Q ss_pred CChHhHHHHHHCCCHHHHHHhhh-cCChHHHHHHHHHHH
Q 004073 668 GNEKCCQMVLQEGVIPALVSISV-NGSTRGRDKAQRLLM 705 (775)
Q Consensus 668 ~~~~~~~~v~~~G~i~~Lv~Ll~-~g~~~~k~kA~~LL~ 705 (775)
. -++|.|..++. +.+.+++.+|.+.|.
T Consensus 251 ~-----------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 K-----------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred H-----------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 3 26899998886 889999999988775
|
|
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.5e-09 Score=84.77 Aligned_cols=44 Identities=36% Similarity=0.745 Sum_probs=31.9
Q ss_pred CccccccccccccCceec-CCCCccchHHHHHHHh-cCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDPVII-ASGQTYERICIEKWLS-DGHSTCPKTQ 324 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~-~~~~~CP~t~ 324 (775)
-.|.||||+..|.|||.. .|||+|||.+|..|+. .+...||+.|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 479999999999999986 8999999999999995 4456799954
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.2e-07 Score=100.04 Aligned_cols=232 Identities=16% Similarity=0.129 Sum_probs=161.6
Q ss_pred CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHh------hCcHHHHHHHhccCCh--HHHHHHHHhcc
Q 004073 469 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA------AGVIPLLEKMISNSNS--HGAATALYLNL 540 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~------~G~i~~Lv~lL~s~~~--~~~AaaaL~~L 540 (775)
+....++.+|... ..+.++....+..+..+...++.....+.. ...+.++++++.+++. ...|+.+|..|
T Consensus 55 ~~~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 55 QYASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp -------HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4466777788763 257788888888888886544444444444 1267888888888875 45677777777
Q ss_pred cccCCccccccccCchHHHHHhhcCCC---CHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhc------c-CCCh
Q 004073 541 SFLDDAKPIIGSSHAVPFLVELCKGKT---EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA------V-PGDP 610 (775)
Q Consensus 541 s~~~~~k~~I~~~g~i~~LV~LL~~~~---~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL------~-~~~~ 610 (775)
......+..-...+.++.++..|.+.. +.+....|+.+|.+|...++.|..+.+.|+++.|+.++ . ..+.
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 666554444333577888888887531 34566899999999999999999999999999999988 2 2356
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCChH-hHHHHHHCCCHHHHHHh
Q 004073 611 MWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEK-CCQMVLQEGVIPALVSI 688 (775)
Q Consensus 611 ~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~-~~~~v~~~G~i~~Lv~L 688 (775)
.++-+++-+++.|+-+++....+... +.|+.|+++++. ...++..-++++|.|++..+.. ....|+..|+.+.|-.|
T Consensus 213 Ql~Y~~ll~lWlLSF~~~~~~~~~~~-~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L 291 (312)
T PF03224_consen 213 QLQYQALLCLWLLSFEPEIAEELNKK-YLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL 291 (312)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHTT-SHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHhcc-chHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence 78889999999999999999999886 699999999984 5788999999999999986643 78888888887777766
Q ss_pred hhc--CChHHHHHHHHH
Q 004073 689 SVN--GSTRGRDKAQRL 703 (775)
Q Consensus 689 l~~--g~~~~k~kA~~L 703 (775)
... .+++..+--..+
T Consensus 292 ~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 292 SERKWSDEDLTEDLEFL 308 (312)
T ss_dssp HSS--SSHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHH
Confidence 654 466666554444
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-06 Score=92.66 Aligned_cols=222 Identities=14% Similarity=0.108 Sum_probs=161.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|.+. +..++..|+..|..+- ...+++.+..++.+ .|+.++..|+++|..|.. ..
T Consensus 24 ~~~~L~~~L~d~-d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~--~~ 85 (280)
T PRK09687 24 NDDELFRLLDDH-NSLKRISSIRVLQLRG-----------GQDVFRLAIELCSS----KNPIERDIGADILSQLGM--AK 85 (280)
T ss_pred cHHHHHHHHhCC-CHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhC----CCHHHHHHHHHHHHhcCC--Cc
Confidence 455677778777 8999999999987653 24567788888877 799999999999999842 21
Q ss_pred hhHHHHhhCcHHHHHHHh-ccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004073 507 NKELMLAAGVIPLLEKMI-SNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL-~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
.. ...+++.|..++ +..+. +..|+.+|.++..... .....++..|..++.+. +..++..|+.+|..+.
T Consensus 86 ~~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~-~~~VR~~a~~aLg~~~ 156 (280)
T PRK09687 86 RC----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDK-STNVRFAVAFALSVIN 156 (280)
T ss_pred cc----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCC-CHHHHHHHHHHHhccC
Confidence 11 234778888874 44443 5678888887743221 11234567788888888 9999999999997653
Q ss_pred CCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004073 584 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 584 ~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
...+++.|+.+|.+.+..++..|+.+|..+... ++..++.|+.+|.+.++.++..|+..|.
T Consensus 157 ----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~---------~~~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 157 ----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD---------NPDIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred ----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 123889999999999999999999999988321 2356788999999999999999999987
Q ss_pred HhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004073 664 LLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 664 ~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
.+-.. -+++.|+..+.++. ++..|...|-.+
T Consensus 218 ~~~~~-----------~av~~Li~~L~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 218 LRKDK-----------RVLSVLIKELKKGT--VGDLIIEAAGEL 248 (280)
T ss_pred ccCCh-----------hHHHHHHHHHcCCc--hHHHHHHHHHhc
Confidence 75332 26777777776655 334444444433
|
|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-08 Score=74.62 Aligned_cols=38 Identities=39% Similarity=0.929 Sum_probs=33.5
Q ss_pred cccccccccCc-eecCCCCccchHHHHHHHhcCCCCCCCC
Q 004073 285 CPISLQLMYDP-VIIASGQTYERICIEKWLSDGHSTCPKT 323 (775)
Q Consensus 285 CPIs~~~m~dP-V~~~~G~ty~r~~I~~w~~~~~~~CP~t 323 (775)
|||+++.+.|| |+++|||+|++.||++|+.. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 7899986
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-06 Score=100.94 Aligned_cols=257 Identities=15% Similarity=0.113 Sum_probs=196.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-cChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLK-DDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak-~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
..+..|+..|....++..|.+|+.+|+.... .+++.-.-+--.-+||.|+.+|+.. .+.+++..|+.+|.+|.---
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E---~n~DIMl~AcRaltyl~evl 243 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE---HNFDIMLLACRALTYLCEVL 243 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHhhc
Confidence 4677899988765478899999999987664 4444333333357899999999874 68999999999999997656
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
++....+++.++||.|+.-|..=.. -|.++.+|..++..+ . ..|.+.|++-..+..|+== +..+++.|+.+-.|
T Consensus 244 P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-~-~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN 320 (1051)
T KOG0168|consen 244 PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-P-KAILQAGALSAVLSYLDFF-SIHAQRVALAIAAN 320 (1051)
T ss_pred cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-c-HHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 7788888999999999998765332 477999999888653 3 3455589999888888755 67799999999999
Q ss_pred hcCC--CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC----cccHHHHhhCCCcHHHHHHHhcCC----C
Q 004073 582 LSTI--PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS----AAGKEEMNSTPGLVSGLATVLDTG----E 651 (775)
Q Consensus 582 Ls~~--~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~----~e~~~~i~~~~g~I~~Lv~lL~~~----s 651 (775)
+|.. ++.=..++ .++|.|..+|...+....+.++-.+..++.. ++--+++..+ |.|.....+|... +
T Consensus 321 ~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~-dLi~~~~qLlsvt~t~Ls 397 (1051)
T KOG0168|consen 321 CCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH-DLITNIQQLLSVTPTILS 397 (1051)
T ss_pred HHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch-hHHHHHHHHHhcCccccc
Confidence 9943 33333333 3799999999888888888888888888763 3344566665 9999999998743 3
Q ss_pred HHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc
Q 004073 652 LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN 691 (775)
Q Consensus 652 ~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~ 691 (775)
....--.++.|..+|++++-.....+..++...|-.++..
T Consensus 398 ~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 398 NGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred ccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 3455666788888999988888888888888888766653
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.7e-06 Score=93.26 Aligned_cols=277 Identities=16% Similarity=0.109 Sum_probs=189.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc-----cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-----NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~-----~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 502 (775)
+..|+..|......++....+.-+..+..+++..-..+.+ .....+++++|.. +|.-++..|+..|..+..
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~----~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR----QDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC----CchhHHHHHHHHHHHHHh
Confidence 3345555554446677778888888888776654444444 3567788888876 788899999999988864
Q ss_pred cCCchhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCC-CHHHHHHHHHH
Q 004073 503 NNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT-EHQCKLDALHA 578 (775)
Q Consensus 503 ~~~~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~-~~~~k~~Al~a 578 (775)
....+.......-.+..|...|.+++. ...|+..|..|...+++|..+...++++.|+.+|+... +.+..-.++-+
T Consensus 131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 333221111111134455566665432 45577888888899999998888889999999998753 57899999999
Q ss_pred HHHhcCCCCChHHHHHcCcHHHHHHhccC-CChHHHHHHHHHHHHHhCCcc-------cHHHHhhC--------------
Q 004073 579 LYNLSTIPSNIPNLLSAGIISGLQSLAVP-GDPMWTEKSLAVLLNLAASAA-------GKEEMNST-------------- 636 (775)
Q Consensus 579 L~nLs~~~~nk~~iv~aG~V~~Lv~LL~~-~~~~i~e~al~~L~nLa~~~e-------~~~~i~~~-------------- 636 (775)
++-|+.+++....+...|.|+.|++++.. ....+..-++++|.||...+. ....++..
T Consensus 211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 99999988877777778999999999865 456778889999999988542 11122221
Q ss_pred -------------------------------------------------------------CCcHHHHHHHhc-CCCHHH
Q 004073 637 -------------------------------------------------------------PGLVSGLATVLD-TGELIE 654 (775)
Q Consensus 637 -------------------------------------------------------------~g~I~~Lv~lL~-~~s~~~ 654 (775)
-..+..|+++|. +.++.+
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 012334444442 223333
Q ss_pred HHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 655 QEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 655 ~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
..-|+.=+..+++.-|..+..+-+-|+=..++.|+.+.++++|..|...++.|-
T Consensus 371 laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 371 LAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred eehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 333333344444444556667777888788889999999999999998887663
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.1e-07 Score=96.46 Aligned_cols=223 Identities=22% Similarity=0.176 Sum_probs=162.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc------cCchHHHHHHhchhccCCCHHHHHHHHHHHHH
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA------NGFVVALLRFLESAVCERNSYAQEIGAMALFN 499 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~------~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~n 499 (775)
..+..++..+ +. +.+....++.-|..+..+++.....+.. .....++++++.+ +|..++..|+..|..
T Consensus 58 ~~~l~lL~~~-~~-~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~----~D~~i~~~a~~iLt~ 131 (312)
T PF03224_consen 58 SLFLNLLNKL-SS-NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR----NDSFIQLKAAFILTS 131 (312)
T ss_dssp ----HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-----SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-cC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC----CCHHHHHHHHHHHHH
Confidence 4555777776 33 7788889999999999888766555554 1257888888877 799999999999999
Q ss_pred hhccCCchhHHHHhhCcHHHHHHHhccCCh------HHHHHHHHhcccccCCccccccccCchHHHHHhh------cCCC
Q 004073 500 LAVNNNRNKELMLAAGVIPLLEKMISNSNS------HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELC------KGKT 567 (775)
Q Consensus 500 Ls~~~~~nk~~i~~~G~i~~Lv~lL~s~~~------~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL------~~~~ 567 (775)
+....+ .+..-...++++.++.+|.+... ...|+.+|.+|...+++|..+.+.|+++.|+.+| .+..
T Consensus 132 Ll~~~~-~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~ 210 (312)
T PF03224_consen 132 LLSQGP-KRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSS 210 (312)
T ss_dssp HHTSTT-T--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------
T ss_pred HHHcCC-ccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCC
Confidence 976433 33322236788888888876332 2558888899999999999999999999999999 3444
Q ss_pred CHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccC-CChHHHHHHHHHHHHHhCCcc--cHHHHhhCCCcHHHHH
Q 004073 568 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVP-GDPMWTEKSLAVLLNLAASAA--GKEEMNSTPGLVSGLA 644 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~-~~~~i~e~al~~L~nLa~~~e--~~~~i~~~~g~I~~Lv 644 (775)
+.+..-.++-++|-|+.+++....+...+.|+.|++++.. ....+..-++++|.||..... ....++.. | +..++
T Consensus 211 ~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~-~-~l~~l 288 (312)
T PF03224_consen 211 GIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLC-G-LLKTL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH---HHHHH
T ss_pred chhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHc-c-HHHHH
Confidence 6889999999999999999999999999999999998865 467888999999999999776 66677764 4 45555
Q ss_pred HHhcC---CCHHHHHH
Q 004073 645 TVLDT---GELIEQEQ 657 (775)
Q Consensus 645 ~lL~~---~s~~~~e~ 657 (775)
..|.. ++++..+.
T Consensus 289 ~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 289 QNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHHSS--SSHHHHHH
T ss_pred HHHhcCCCCCHHHHHH
Confidence 55543 46666654
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-05 Score=98.27 Aligned_cols=225 Identities=19% Similarity=0.182 Sum_probs=126.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|.+. +..+|..|+..|..+. ..++++.|+..|.+ .+..++..|+.+|..+.....
T Consensus 622 ~~~~L~~~L~D~-d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D----~d~~VR~~Aa~aL~~l~~~~~- 684 (897)
T PRK13800 622 SVAELAPYLADP-DPGVRRTAVAVLTETT-----------PPGFGPALVAALGD----GAAAVRRAAAEGLRELVEVLP- 684 (897)
T ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccC-
Confidence 455777788777 8999999998887653 34577888888876 788888888888876631100
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC-----------C--cc----ccccccCchHHHHHhhcCCC
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-----------D--AK----PIIGSSHAVPFLVELCKGKT 567 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~-----------~--~k----~~I~~~g~i~~LV~LL~~~~ 567 (775)
..+.|...|.+.+. +..|+.+|..+...+ + .+ ..++..+..+.|..++.+.
T Consensus 685 ---------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~- 754 (897)
T PRK13800 685 ---------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDE- 754 (897)
T ss_pred ---------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCC-
Confidence 11334444444333 222333332221000 0 00 0000011223444555555
Q ss_pred CHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHh
Q 004073 568 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL 647 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL 647 (775)
++.++..++.+|..+... ..+.++.|+.++.+.++.++..|+.+|.++... ...+..|+..|
T Consensus 755 ~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~----------~~~~~~l~~aL 816 (897)
T PRK13800 755 NREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCP----------PDDVAAATAAL 816 (897)
T ss_pred CHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc----------chhHHHHHHHh
Confidence 555555555555555321 122356667777777777777777777665321 11234455566
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004073 648 DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 648 ~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
.+.++.++..|+.+|..+.... +++.|+.++.+.+..+|..|...|..+
T Consensus 817 ~d~d~~VR~~Aa~aL~~l~~~~-----------a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 817 RASAWQVRQGAARALAGAAADV-----------AVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred cCCChHHHHHHHHHHHhccccc-----------hHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 6666666666666665553221 457777777777777777777777654
|
|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
Probab=98.48 E-value=6e-08 Score=72.89 Aligned_cols=36 Identities=25% Similarity=0.752 Sum_probs=23.3
Q ss_pred cccccccccC----ceecCCCCccchHHHHHHHhcC---CCCCC
Q 004073 285 CPISLQLMYD----PVIIASGQTYERICIEKWLSDG---HSTCP 321 (775)
Q Consensus 285 CPIs~~~m~d----PV~~~~G~ty~r~~I~~w~~~~---~~~CP 321 (775)
||||.+ |.+ |++++||||||+.||++|+..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999854 34577
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-05 Score=89.52 Aligned_cols=270 Identities=15% Similarity=0.163 Sum_probs=193.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
++++.|+.++.+.-=.+.|+.|+..|+.+++ ..|..++.. ++++|++.|..+. .|+++...++.+++++..+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~--~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDY--MDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhcc--CCHHHHHHHHHHHHHHHhcCc
Confidence 7899999999877456899999999999996 467666654 5899999998743 689999999999999976543
Q ss_pred ------chh----------HHHH-hhCcHHHHHHHhccCCh--HHHHHHHHhccccc--CCccccccc-cCchHHHHHhh
Q 004073 506 ------RNK----------ELML-AAGVIPLLEKMISNSNS--HGAATALYLNLSFL--DDAKPIIGS-SHAVPFLVELC 563 (775)
Q Consensus 506 ------~nk----------~~i~-~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~--~~~k~~I~~-~g~i~~LV~LL 563 (775)
+.+ ..++ ..+.|..|+..+...+- +-.|...+.++-.. .+.+..+.. +-+|..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 222 1222 36788888888876553 45577777654432 355666655 68999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCCChHHHHH-cCcHHHHHHhccC-C---ChHHHHHHHHHHHHHhCCcccHHHHhhCCC
Q 004073 564 KGKTEHQCKLDALHALYNLSTIPSNIPNLLS-AGIISGLQSLAVP-G---DPMWTEKSLAVLLNLAASAAGKEEMNSTPG 638 (775)
Q Consensus 564 ~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~-aG~V~~Lv~LL~~-~---~~~i~e~al~~L~nLa~~~e~~~~i~~~~g 638 (775)
.+. ...++-+|+-.|..|+.+..+..++|. .++...|..++.. | ..-+.+.|+..|-||-.....-..+....+
T Consensus 176 ~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~ 254 (970)
T KOG0946|consen 176 RDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGS 254 (970)
T ss_pred hhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccc
Confidence 987 778999999999999988888888877 8899999999854 2 235789999999999886665555555569
Q ss_pred cHHHHHHHhcC---CCH-------H---HHHHHHHHHHHhhcCC------hHhHHHHHHCCCHHHHHHhhhcC--ChHHH
Q 004073 639 LVSGLATVLDT---GEL-------I---EQEQAVSCLFLLCNGN------EKCCQMVLQEGVIPALVSISVNG--STRGR 697 (775)
Q Consensus 639 ~I~~Lv~lL~~---~s~-------~---~~e~Av~~L~~Lc~~~------~~~~~~v~~~G~i~~Lv~Ll~~g--~~~~k 697 (775)
.||.|.++|.. ++. . .--.|+.++..+...+ ..+..++.+.+++..|..++.+. ...++
T Consensus 255 ~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIl 334 (970)
T KOG0946|consen 255 YIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADIL 334 (970)
T ss_pred cHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHH
Confidence 99999998862 331 1 1123344444444321 12345677788999998666554 23444
Q ss_pred HHHHH
Q 004073 698 DKAQR 702 (775)
Q Consensus 698 ~kA~~ 702 (775)
..+.-
T Consensus 335 tesii 339 (970)
T KOG0946|consen 335 TESII 339 (970)
T ss_pred HHHHH
Confidence 44443
|
|
| >KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-07 Score=99.00 Aligned_cols=68 Identities=25% Similarity=0.436 Sum_probs=62.6
Q ss_pred CCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 004073 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEM 348 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~ 348 (775)
-.-++|-||.+.|+-||++|||||||--||.+++.. ++.||.|..+.....|+-|+.|..+|+.+-..
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNFA 88 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHHH
Confidence 356899999999999999999999999999999986 88999999999999999999999999988543
|
|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.8e-08 Score=76.65 Aligned_cols=58 Identities=21% Similarity=0.442 Sum_probs=34.1
Q ss_pred ccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 004073 282 ELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLI 342 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i 342 (775)
-++|++|.++|++||.+ .|.|+||+.||...+.. .||+|+.|....+++-|+.|.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 47999999999999975 89999999999887654 499999999999999999998886
|
|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-07 Score=69.08 Aligned_cols=39 Identities=41% Similarity=1.010 Sum_probs=36.4
Q ss_pred cccccccccCce-ecCCCCccchHHHHHHHh-cCCCCCCCC
Q 004073 285 CPISLQLMYDPV-IIASGQTYERICIEKWLS-DGHSTCPKT 323 (775)
Q Consensus 285 CPIs~~~m~dPV-~~~~G~ty~r~~I~~w~~-~~~~~CP~t 323 (775)
|||+++.+.+|+ +++|||+|++.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999998 667789986
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A .... |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.5e-05 Score=92.71 Aligned_cols=227 Identities=17% Similarity=0.081 Sum_probs=146.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC-
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN- 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~- 504 (775)
+.+..|+..|... +..++..|+..|..+.... ...+.|...|.+ .|+.++..|+.+|..+....
T Consensus 652 ~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~----~d~~VR~~A~~aL~~~~~~~~ 716 (897)
T PRK13800 652 GFGPALVAALGDG-AAAVRRAAAEGLRELVEVL----------PPAPALRDHLGS----PDPVVRAAALDVLRALRAGDA 716 (897)
T ss_pred hHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcC----CCHHHHHHHHHHHHhhccCCH
Confidence 3456667777666 8999999999887774321 112345555554 45566666655555442100
Q ss_pred ---------Cc--hhHHHH----hhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCC
Q 004073 505 ---------NR--NKELML----AAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT 567 (775)
Q Consensus 505 ---------~~--nk~~i~----~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~ 567 (775)
++ .|...+ .-+..+.|..+|...+. +..++.+|..+... ..+.++.|..++++.
T Consensus 717 ~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~- 787 (897)
T PRK13800 717 ALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDP- 787 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCC-
Confidence 00 000000 00112334444444433 23344444433221 123478999999998
Q ss_pred CHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHh
Q 004073 568 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL 647 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL 647 (775)
++.++..|+.+|.++.... .+++.|+..|.+.+..++..|+.+|..+.. ...++.|+.+|
T Consensus 788 d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L 847 (897)
T PRK13800 788 DPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEAL 847 (897)
T ss_pred CHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHh
Confidence 9999999999999884321 123567888888889999999999987642 35679999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHH
Q 004073 648 DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML 706 (775)
Q Consensus 648 ~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~ 706 (775)
.+.++.+|..|+.+|..+- .++. +.+.|...+.+.+..+|..|...|..
T Consensus 848 ~D~~~~VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 848 TDPHLDVRKAAVLALTRWP-GDPA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred cCCCHHHHHHHHHHHhccC-CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999999999998862 2221 46777788899999999999998863
|
|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.4e-07 Score=70.95 Aligned_cols=47 Identities=28% Similarity=0.602 Sum_probs=41.3
Q ss_pred CccccccccccccCceecCCCCc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
+++.|+||++-+.++++++|||. ||..|+.+|+. ....||+|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 47899999999999999999999 99999999998 5789999998864
|
... |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4e-05 Score=82.39 Aligned_cols=184 Identities=20% Similarity=0.243 Sum_probs=146.9
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHH
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPL 519 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~ 519 (775)
+.+.+..|+..|..++.+ -+|-..+...|++.+|+.+|.+ .+..+++.|+++|...+.+++.....+++.|+++.
T Consensus 96 ~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~----~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLEN----SDAELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred CHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcC----CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 789999999999999965 7788889999999999999988 89999999999999998776666666666665555
Q ss_pred HHHHhccCChHHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC-CChHHHHHcCcH
Q 004073 520 LEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGII 598 (775)
Q Consensus 520 Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V 598 (775)
|+..| .+..+..++..|+.|+++|-.+. ....++...++.
T Consensus 171 Ll~~l---------------------------------------s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~ 211 (342)
T KOG2160|consen 171 LLKIL---------------------------------------SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGY 211 (342)
T ss_pred HHHHH---------------------------------------ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCH
Confidence 55544 43325567778888888887654 466777788899
Q ss_pred HHHHHhccC--CChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004073 599 SGLQSLAVP--GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 599 ~~Lv~LL~~--~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
..|...|.+ .+..++.+++..|..|.........+....+....++.+....+....|.|+.+++.+..
T Consensus 212 ~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 212 QVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 999999987 578888999999999987554444455555777788888888899999999999888765
|
|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.8e-07 Score=92.64 Aligned_cols=48 Identities=21% Similarity=0.619 Sum_probs=41.3
Q ss_pred CCccccccccccccCc--------eecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDP--------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 280 p~~f~CPIs~~~m~dP--------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
.++..||||++.+.+| |+.+|||+||+.||.+|+.. +.+||.||+++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 4578999999988774 56689999999999999975 779999998764
|
|
| >KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.9e-07 Score=91.61 Aligned_cols=58 Identities=26% Similarity=0.551 Sum_probs=52.4
Q ss_pred CCccccccccccccCceecCCCCccchHHHHHHHh--cCCCCCCCCCCCCCCCCCcccHH
Q 004073 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLS--DGHSTCPKTQQKLPHLCLTPNYC 337 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~--~~~~~CP~t~~~l~~~~l~pn~~ 337 (775)
-..|-|-||++.-+|||+..|||-||=-||-+|++ .+...||+|+...+...++|-|.
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 36899999999999999999999999999999997 34567999999999999999764
|
|
| >KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.8e-07 Score=96.53 Aligned_cols=71 Identities=28% Similarity=0.613 Sum_probs=61.8
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 004073 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGV 351 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~i 351 (775)
...+++.||||++.|.+|++++|||+||+.||..|+. +...||.|+. ....+.||..+..++......+..
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~--~~~~~~~n~~l~~~~~~~~~~~~~ 79 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP--PSRNLRPNVLLANLVERLRQLRLS 79 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC--chhccCccHHHHHHHHHHHhcCCc
Confidence 3457999999999999999999999999999999998 6778999996 233788999999999998877653
|
|
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.4e-07 Score=85.40 Aligned_cols=53 Identities=25% Similarity=0.559 Sum_probs=45.2
Q ss_pred CccccccccccccCce--ecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004073 281 EELRCPISLQLMYDPV--IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP 334 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV--~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~p 334 (775)
.-|.||||++-+..=| ...|||.||+.||+..+.. ...||.|+.++++..+.+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhee
Confidence 5599999999988755 4689999999999999986 558999999998877654
|
|
| >KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.2e-06 Score=104.29 Aligned_cols=73 Identities=30% Similarity=0.435 Sum_probs=67.6
Q ss_pred CCCCCCccccccccccccCceecC-CCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004073 276 MPLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 349 (775)
Q Consensus 276 ~~~~p~~f~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 349 (775)
..++|++|..||+..+|+|||++| +|+|.||+.|++++.. ..+.|.||++|+..+++||..||.-|+.|...+
T Consensus 864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 356999999999999999999998 8999999999999875 568899999999999999999999999997654
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-05 Score=92.05 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=126.9
Q ss_pred cccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc-CCCCChHHHHHcCcHHHHHH-hccCCChHHHHHHHHHHHHHhCC
Q 004073 549 IIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS-TIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAAS 626 (775)
Q Consensus 549 ~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs-~~~~nk~~iv~aG~V~~Lv~-LL~~~~~~i~e~al~~L~nLa~~ 626 (775)
.+-..-++|.||.||++..+.++...|++||.+|+ ..+.....+|+.|+||.|++ |+.-.-..+.|+++.+|..|+..
T Consensus 206 ~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~ 285 (1051)
T KOG0168|consen 206 GFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR 285 (1051)
T ss_pred cccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh
Confidence 34446789999999999989999999999999999 58889999999999999999 55555566779999999999863
Q ss_pred cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-ChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHH
Q 004073 627 AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG-NEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM 705 (775)
Q Consensus 627 ~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~ 705 (775)
.-.+++.+ |++...+..|.--+..+|..|+++..|+|.. .++.-..+++ ++|.|-.|+...+...-+.+.-.+.
T Consensus 286 --H~~AiL~A-G~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ 360 (1051)
T KOG0168|consen 286 --HPKAILQA-GALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLT 360 (1051)
T ss_pred --ccHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHH
Confidence 33567774 9999999999988999999999999999964 2233333333 5888999999888888887776665
Q ss_pred HhHhc
Q 004073 706 LFREQ 710 (775)
Q Consensus 706 ~L~~~ 710 (775)
.+.+.
T Consensus 361 ri~d~ 365 (1051)
T KOG0168|consen 361 RIADG 365 (1051)
T ss_pred HHHHh
Confidence 55443
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=74.52 Aligned_cols=156 Identities=18% Similarity=0.119 Sum_probs=130.8
Q ss_pred ccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCccc
Q 004073 550 IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG 629 (775)
Q Consensus 550 I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~ 629 (775)
|...+-+..||.=..+.++.++++....-|.|.+-++-|-..+.+..++...+.-|...+..+++-+++.|.|||-.+.+
T Consensus 12 i~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 12 IDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred CcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence 44456788888888777799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHH
Q 004073 630 KEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML 706 (775)
Q Consensus 630 ~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~ 706 (775)
...|... ++++.++..+.+....+-..|+..|..||-+....+..++...++........+.+.+-+.-|...|.-
T Consensus 92 ~~~I~ea-~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 92 AKFIREA-LGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDK 167 (173)
T ss_pred HHHHHHh-cCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999885 889999999988888888999999999998776677777776666666655555555555555555543
|
|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.3e-06 Score=64.40 Aligned_cols=44 Identities=39% Similarity=0.973 Sum_probs=39.4
Q ss_pred ccccccccccCceecC-CCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004073 284 RCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 284 ~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
.||||++.+.+|+.+. |||+|+..|+..|+..++..||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999999999886 9999999999999988788899998753
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.5e-05 Score=80.83 Aligned_cols=147 Identities=20% Similarity=0.166 Sum_probs=128.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC-cccHHHHhhCCCcHHHHH
Q 004073 566 KTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLA 644 (775)
Q Consensus 566 ~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~-~e~~~~i~~~~g~I~~Lv 644 (775)
..+.+-++.|+.-|..++.+-+|...++..|+..+|+.++.+.+..+++.|+++|...+.+ +..+..+++. |+...|+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~-~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL-GALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc-ccHHHHH
Confidence 3478899999999999999999999999999999999999999999999999999999885 5667777875 8999999
Q ss_pred HHhcCC-CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc--CChHHHHHHHHHHHHhHhccCC
Q 004073 645 TVLDTG-ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN--GSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 645 ~lL~~~-s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~--g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
.++.+. +..++.+|+.++.++-++.+.....+...++...|...+.+ .+.+.|+||..|+..|-.....
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 999864 55677999999999999887788888888889999998888 5788899999999888754433
|
|
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.9e-06 Score=88.24 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=60.5
Q ss_pred CccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 004073 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEM 348 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~ 348 (775)
.-++|-||.+.++-|++.+||||||--||.+++.. ++.||+|+.+....-++-+..++..++.+...
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~ 90 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHARN 90 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhhc
Confidence 45799999999999999999999999999999986 88999999998888899898888888887553
|
|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.4e-06 Score=66.25 Aligned_cols=40 Identities=33% Similarity=0.855 Sum_probs=33.9
Q ss_pred cccccccccc---CceecCCCCccchHHHHHHHhcCCCCCCCCC
Q 004073 284 RCPISLQLMY---DPVIIASGQTYERICIEKWLSDGHSTCPKTQ 324 (775)
Q Consensus 284 ~CPIs~~~m~---dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~ 324 (775)
.||||++-|. .++.++|||+|.+.||.+|+.. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999994 5667799999999999999987 56999985
|
... |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00017 Score=84.04 Aligned_cols=250 Identities=15% Similarity=0.160 Sum_probs=166.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 509 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~ 509 (775)
.+...|.+. ++.+|.+|+..+..+.+.+++. +... .++.|.++|.+ .|+.++..|+.++..+ ..+++.-.
T Consensus 118 ~v~~ll~~~-~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d----~~~~V~~~a~~~l~~i-~~~~~~~~ 187 (526)
T PF01602_consen 118 DVIKLLSDP-SPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSD----KDPSVVSAALSLLSEI-KCNDDSYK 187 (526)
T ss_dssp HHHHHHHSS-SHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTH----SSHHHHHHHHHHHHHH-HCTHHHHT
T ss_pred HHHHHhcCC-chHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccC----CcchhHHHHHHHHHHH-ccCcchhh
Confidence 344456666 8999999999999999876642 2223 68999999977 7899999999999998 21221111
Q ss_pred HHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC
Q 004073 510 LMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS 587 (775)
Q Consensus 510 ~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~ 587 (775)
-.-...+..|..++...++ +...+.++..++........- ...++.+..++++. ++.+.-.|+.++..+.....
T Consensus 188 -~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~ 263 (526)
T PF01602_consen 188 -SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE 263 (526)
T ss_dssp -THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH
T ss_pred -hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH
Confidence 1122334444444445554 345666666555433211100 45678888888877 88889999999998866544
Q ss_pred ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhh
Q 004073 588 NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD-TGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 588 nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc 666 (775)
.-..++++|+.+|.+.+..++-.++..|..++... ...+. + ....+..+. +.++.++..++.+|..++
T Consensus 264 -----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~-~---~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 264 -----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF-N---QSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp -----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG-T---HHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred -----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh-h---hhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 44558888999998888888899999999998765 23332 2 233344555 778889999999999998
Q ss_pred cCChHhHHHHHHCCCHHHHHHhh-hcCChHHHHHHHHHHHHhHhcc
Q 004073 667 NGNEKCCQMVLQEGVIPALVSIS-VNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 667 ~~~~~~~~~v~~~G~i~~Lv~Ll-~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
... +... +++.|...+ ..+++..++.+...+..+....
T Consensus 333 ~~~--n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 333 NES--NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp -HH--HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred ccc--chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 743 3333 466676666 4457778888777776665443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=5e-06 Score=86.07 Aligned_cols=54 Identities=22% Similarity=0.545 Sum_probs=47.6
Q ss_pred CCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 004073 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLT 333 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~ 333 (775)
.+..+.|-||++-++||--+||||.||=+||..|..+ ..-||.||+++++..++
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence 3467999999999999999999999999999999987 44599999998876653
|
|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.7e-06 Score=59.98 Aligned_cols=39 Identities=49% Similarity=1.107 Sum_probs=36.3
Q ss_pred cccccccccCceecCCCCccchHHHHHHHhcCCCCCCCC
Q 004073 285 CPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKT 323 (775)
Q Consensus 285 CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t 323 (775)
|||+++...+|++++|||.|+..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998667789986
|
E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s) |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00021 Score=83.28 Aligned_cols=251 Identities=17% Similarity=0.221 Sum_probs=174.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
+-.+...|.+. ++.+|.-|++.|..+.. ++... -.++.+.++|.+ .++.++..|+.++..+...++
T Consensus 81 ~n~l~kdl~~~-n~~~~~lAL~~l~~i~~--~~~~~-----~l~~~v~~ll~~----~~~~VRk~A~~~l~~i~~~~p-- 146 (526)
T PF01602_consen 81 INSLQKDLNSP-NPYIRGLALRTLSNIRT--PEMAE-----PLIPDVIKLLSD----PSPYVRKKAALALLKIYRKDP-- 146 (526)
T ss_dssp HHHHHHHHCSS-SHHHHHHHHHHHHHH-S--HHHHH-----HHHHHHHHHHHS----SSHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHhhcCC-CHHHHHHHHhhhhhhcc--cchhh-----HHHHHHHHHhcC----CchHHHHHHHHHHHHHhccCH--
Confidence 44566678777 89999999999999872 33322 246778888887 789999999999999964322
Q ss_pred hHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcc-cccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004073 508 KELMLAAGVIPLLEKMISNSNS--HGAATALYLNL-SFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~L-s~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
..+... .++.|..+|...+. ...|+.++..+ ...+.+...+ ...+..|.+++... ++-.+..++..|..++.
T Consensus 147 -~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~--~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 147 -DLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLI--PKLIRILCQLLSDP-DPWLQIKILRLLRRYAP 221 (526)
T ss_dssp -CCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHH--HHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTS
T ss_pred -HHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhH--HHHHHHhhhccccc-chHHHHHHHHHHHhccc
Confidence 222233 79999999977765 35566666667 1111111111 34455566666666 88899999999988875
Q ss_pred CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004073 585 IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFL 664 (775)
Q Consensus 585 ~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~ 664 (775)
...... -....++.+..++.+.+..+.-.|+.++..+..... +.. .++..|+.+|.+.++.++-.++..|..
T Consensus 222 ~~~~~~--~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----~~~--~~~~~L~~lL~s~~~nvr~~~L~~L~~ 293 (526)
T PF01602_consen 222 MEPEDA--DKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----LLQ--KAINPLIKLLSSSDPNVRYIALDSLSQ 293 (526)
T ss_dssp SSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH----HHH--HHHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred CChhhh--hHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH----HHH--hhHHHHHHHhhcccchhehhHHHHHHH
Confidence 443222 115678888888888888899999999998887655 332 578999999999999999999999999
Q ss_pred hhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 665 LCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 665 Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
++...+ ..+. .....+..+..+.+..+|.+|..+|..+...
T Consensus 294 l~~~~~----~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 294 LAQSNP----PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp HCCHCH----HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred hhcccc----hhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 998652 2222 2222233444478899999999988877654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00089 Score=81.03 Aligned_cols=152 Identities=14% Similarity=0.114 Sum_probs=107.3
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHH--cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc--ccHH
Q 004073 556 VPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS--AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA--AGKE 631 (775)
Q Consensus 556 i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~--aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~--e~~~ 631 (775)
++.+-.+|.+. +..-+++|+.||..++.+- ...|.. ..+++..+..|.++++.++-.|+-++..++.+= +-..
T Consensus 350 ~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc--~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 350 FEALEAMLQST-EWKERHAALLALSVIAEGC--SDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 44455677788 9999999999999886432 222222 346666777889999999999999999998853 2222
Q ss_pred HHhhCCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHH-HHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 632 EMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIP-ALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 632 ~i~~~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~-~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
.. ++-.++.|+..+.+ ++++++.+|+.+|.+.....+...-.=.=.+.+. .|..|..++++.+|+.|...|--...
T Consensus 427 ~~--~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 427 KH--HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HH--HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 22 34677788888875 6889999999999998865432211111124555 55578889999999999988866554
Q ss_pred ccC
Q 004073 710 QRQ 712 (775)
Q Consensus 710 ~~~ 712 (775)
..+
T Consensus 505 AA~ 507 (1075)
T KOG2171|consen 505 AAQ 507 (1075)
T ss_pred HHh
Confidence 443
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0036 Score=70.47 Aligned_cols=238 Identities=12% Similarity=0.073 Sum_probs=162.8
Q ss_pred CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHh-----hCcHHHHHHHhccCCh--HHHHHHHHhccc
Q 004073 469 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA-----AGVIPLLEKMISNSNS--HGAATALYLNLS 541 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~-----~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls 541 (775)
..+..++.+|+.. .+..+....+..+-.+...++.-...+.+ .+...+++.+|.+++. ...|+.+|..+.
T Consensus 53 ~y~~~~l~ll~~~---~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 53 QYVKTFVNLLSQI---DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLA 129 (429)
T ss_pred HHHHHHHHHHhcc---CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 5677888888763 55667777777776665433222233333 2467778888887664 356777766554
Q ss_pred ccCCcc-ccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCC--ChHHHHHHHH
Q 004073 542 FLDDAK-PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPG--DPMWTEKSLA 618 (775)
Q Consensus 542 ~~~~~k-~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~--~~~i~e~al~ 618 (775)
.....+ ......-.+.-|...|+++.+...+.-|+.+|.+|...++.|..+.++++++.|+.+|... +..++-+++-
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 432211 0000011233455566654357788889999999999999999999999999999999652 5678899999
Q ss_pred HHHHHhCCcccHHHHhhCCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCC------hHhHHHHHHCCCHHHHHHhhhc
Q 004073 619 VLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGN------EKCCQMVLQEGVIPALVSISVN 691 (775)
Q Consensus 619 ~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~------~~~~~~v~~~G~i~~Lv~Ll~~ 691 (775)
+++.|+-.+++...... .+.|+.|+++++. .-.++..-++++|.||...+ ......+++.|+.+.|-.|...
T Consensus 210 ~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~r 288 (429)
T cd00256 210 CIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQR 288 (429)
T ss_pred HHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcC
Confidence 99999998887666554 5999999999985 45678888999999998743 2345677777777666566554
Q ss_pred --CChHHHHHHHHHHHHhHhc
Q 004073 692 --GSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 692 --g~~~~k~kA~~LL~~L~~~ 710 (775)
.+++..+--..+-..|.+.
T Consensus 289 k~~DedL~edl~~L~e~L~~~ 309 (429)
T cd00256 289 KYDDEDLTDDLKFLTEELKNS 309 (429)
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 4677776666665555433
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=1e-05 Score=80.81 Aligned_cols=56 Identities=18% Similarity=0.462 Sum_probs=44.1
Q ss_pred CCCCccccccccccccC---------ceecCCCCccchHHHHHHHhcC-----CCCCCCCCCCCCCCCCccc
Q 004073 278 LPPEELRCPISLQLMYD---------PVIIASGQTYERICIEKWLSDG-----HSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~d---------PV~~~~G~ty~r~~I~~w~~~~-----~~~CP~t~~~l~~~~l~pn 335 (775)
...++..|+||++...+ +++.+|||+||..||.+|.... ..+||.||+.+. .++|+
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pS 235 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMS 235 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccc
Confidence 34678999999998754 4677999999999999999742 356999999864 44443
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00021 Score=81.64 Aligned_cols=147 Identities=20% Similarity=0.108 Sum_probs=111.3
Q ss_pred HHHHHHHHhc--cccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC-CCCChHHHHHcCcHHHHHHhc
Q 004073 530 HGAATALYLN--LSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLA 605 (775)
Q Consensus 530 ~~~AaaaL~~--Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~-~~~nk~~iv~aG~V~~Lv~LL 605 (775)
...|+|.+.. ++.. +.-+.......++.+||.+|.++ +..++..+++||.||.. ...-|..+++.|+|..|..++
T Consensus 392 ~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~ 470 (678)
T KOG1293|consen 392 DFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESML 470 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHh
Confidence 3445555543 3321 22233344567899999999988 99999999999999995 556799999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHhCCcccHHHH--hhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHH
Q 004073 606 VPGDPMWTEKSLAVLLNLAASAAGKEEM--NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ 678 (775)
Q Consensus 606 ~~~~~~i~e~al~~L~nLa~~~e~~~~i--~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~ 678 (775)
.+.+...+..++++|.++.-+.+..... ... =.-..|+.+..+.+..+||.+...|.|+..+..+....+++
T Consensus 471 ~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~k-i~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 471 TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAK-IPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHH-hhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 9999999999999999998765544332 221 23356778888999999999999999999876444444443
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00066 Score=77.66 Aligned_cols=142 Identities=14% Similarity=0.085 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc-ccHHHHhhCCCcHHHHHH
Q 004073 568 EHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLAT 645 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~-e~~~~i~~~~g~I~~Lv~ 645 (775)
+.....+|+..+.+++..- .-+..+-+..++.+||+++.+++..+...++++|.||+..- .-+..++.. |+|..|.+
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~-ngId~l~s 468 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRN-NGIDILES 468 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHc-CcHHHHHH
Confidence 6778888888888876321 11112445679999999999999999999999999998754 457777875 99999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCC-CHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 646 VLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEG-VIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 646 lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G-~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
++.+..+..+..++++|+++.-++.+..+...... ....|+.+..+.+..+++.+..+||+|.-.
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999987755555544444 344567899999999999999999999754
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0045 Score=65.36 Aligned_cols=275 Identities=16% Similarity=0.178 Sum_probs=181.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhh-ccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTG-ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~-~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
....++..|.+. ++.+|..|+.-+-.++.. ..+.... +.-.++.|.+++.. .++ -+.|+++|.|++- +.
T Consensus 4 ~l~elv~ll~~~-sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~----~~~--~~~a~~alVnlsq-~~ 73 (353)
T KOG2973|consen 4 ELVELVELLHSL-SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKD----LDP--AEPAATALVNLSQ-KE 73 (353)
T ss_pred HHHHHHHHhccC-ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccC----ccc--ccHHHHHHHHHHh-hH
Confidence 445677778887 889999999988888876 2222222 24567888888876 333 5678999999975 56
Q ss_pred chhHHHHhhCcHHHHHHHhccCC-h-HHHHHHHHhcccccCCcccccc-------ccCchHHHHHhhcCCCCH-HHHHHH
Q 004073 506 RNKELMLAAGVIPLLEKMISNSN-S-HGAATALYLNLSFLDDAKPIIG-------SSHAVPFLVELCKGKTEH-QCKLDA 575 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~-~-~~~AaaaL~~Ls~~~~~k~~I~-------~~g~i~~LV~LL~~~~~~-~~k~~A 575 (775)
.-+..+++. .+..+++++-+.. . ....+.+|.||+..++....+. ..|.+...+...+.+.+. .-....
T Consensus 74 ~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~yl 152 (353)
T KOG2973|consen 74 ELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYL 152 (353)
T ss_pred HHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHH
Confidence 667777766 8888888887653 3 3557777789998765433221 145555555666655342 234456
Q ss_pred HHHHHHhcCCCCChHHHHHcCcHH--HHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCC-CcHHHH---------
Q 004073 576 LHALYNLSTIPSNIPNLLSAGIIS--GLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTP-GLVSGL--------- 643 (775)
Q Consensus 576 l~aL~nLs~~~~nk~~iv~aG~V~--~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~-g~I~~L--------- 643 (775)
+-.+.||+.....|..+.....++ .|+.+-..++.-=+.-.+++|.|.|-.......++... ..++.|
T Consensus 153 A~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 153 APVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccc
Confidence 677889999888888887755333 23333332222223457888999887766666555410 111111
Q ss_pred ------------HHHhc-----CCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc-CChHHHHHHHHHHH
Q 004073 644 ------------ATVLD-----TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLM 705 (775)
Q Consensus 644 ------------v~lL~-----~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~-g~~~~k~kA~~LL~ 705 (775)
+.+|- ..+|.++..-+-+|+.||.-. ..++.+...|+.+.|-.+=.+ .++.+++..-.+..
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq 311 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQ 311 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 12332 357889999999999999865 567888888888877777665 46777787778888
Q ss_pred HhHhccCC
Q 004073 706 LFREQRQR 713 (775)
Q Consensus 706 ~L~~~~~~ 713 (775)
+|.+-.+.
T Consensus 312 ~Lv~~e~~ 319 (353)
T KOG2973|consen 312 MLVRLEPE 319 (353)
T ss_pred HHHhcccc
Confidence 88774443
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=68.13 Aligned_cols=120 Identities=12% Similarity=0.029 Sum_probs=101.7
Q ss_pred CcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHH
Q 004073 515 GVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPN 591 (775)
Q Consensus 515 G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~ 591 (775)
+.+..|+.-...... ++...|-|.|++.++.|-..+.+.+++...|.-|... +...++.++.+|+|||.+..|+..
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHHHH
Confidence 456666665554432 5778888999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc-cHHHHhh
Q 004073 592 LLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNS 635 (775)
Q Consensus 592 iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e-~~~~i~~ 635 (775)
|+++|++|..+..++++...+...++..|..|+.... .|..+..
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 9999999999999999888888999999999987543 3444443
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00026 Score=82.62 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=115.1
Q ss_pred cHHHHHHHhccCChHHH--HHHHHhcccccCC----ccccccccCchHHHHHhhcCCC------CHHHHHHHHHHHHHhc
Q 004073 516 VIPLLEKMISNSNSHGA--ATALYLNLSFLDD----AKPIIGSSHAVPFLVELCKGKT------EHQCKLDALHALYNLS 583 (775)
Q Consensus 516 ~i~~Lv~lL~s~~~~~~--AaaaL~~Ls~~~~----~k~~I~~~g~i~~LV~LL~~~~------~~~~k~~Al~aL~nLs 583 (775)
.+...+.+|++.++.+. +...+..+...++ .+..|.+.=+.+.|-+||+++. ....+.-|+..|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 45666778887765444 3333345544333 2334666656799999999841 3567888999999999
Q ss_pred CCCCChHHHHHcCcHHHHHHhccCCCh-HHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004073 584 TIPSNIPNLLSAGIISGLQSLAVPGDP-MWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 584 ~~~~nk~~iv~aG~V~~Lv~LL~~~~~-~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
..++....=--.+-||.|++.+...+. .+...|+.+|..++.+++|+..++.. |+|+.|++.+.+ .+...|.|+.+|
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~-g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLES-GAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhc-CCHHHHHHHHHh-CcchHHHHHHHH
Confidence 977643222224579999998876655 89999999999999999999999995 999999999987 777899999999
Q ss_pred HHhhcCC
Q 004073 663 FLLCNGN 669 (775)
Q Consensus 663 ~~Lc~~~ 669 (775)
.+++...
T Consensus 164 ~~Lls~~ 170 (543)
T PF05536_consen 164 LNLLSRL 170 (543)
T ss_pred HHHHHhc
Confidence 9998754
|
|
| >KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.1e-06 Score=87.32 Aligned_cols=67 Identities=25% Similarity=0.371 Sum_probs=57.4
Q ss_pred CCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHH
Q 004073 279 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPH-LCLTPNYCVKGLIASW 345 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~-~~l~pn~~l~~~i~~~ 345 (775)
+--+|.||||+++++--.+. .|+|.||+.||-+-+..|+..||.|++.+.. ..|.+....-.+|.+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 45689999999999999988 6999999999999999999999999999865 4677666666777654
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00041 Score=80.46 Aligned_cols=195 Identities=16% Similarity=0.111 Sum_probs=152.0
Q ss_pred CcHHHHHHHhccCC---hHHHHHHHHhcccccCCccccccccCchHHHHHhhcCC-CCHHHHHHHHHHHHHhcCCCC---
Q 004073 515 GVIPLLEKMISNSN---SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK-TEHQCKLDALHALYNLSTIPS--- 587 (775)
Q Consensus 515 G~i~~Lv~lL~s~~---~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~-~~~~~k~~Al~aL~nLs~~~~--- 587 (775)
..|+.|..-+.+.. ++..|+..|..+| ..+|..+| ..|+++|+..|..+ .+++..+.++.+++++.++++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~s--rkYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFS--RKYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHH--HHHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 35777777776654 3677888887665 46788887 45689999999765 589999999999999987763
Q ss_pred ---ChH-----------HHH-HcCcHHHHHHhccCCChHHHHHHHHHHHHHhC--CcccHHHHhhCCCcHHHHHHHhcCC
Q 004073 588 ---NIP-----------NLL-SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA--SAAGKEEMNSTPGLVSGLATVLDTG 650 (775)
Q Consensus 588 ---nk~-----------~iv-~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~--~~e~~~~i~~~~g~I~~Lv~lL~~~ 650 (775)
+-. .++ ..+-|..|+..+...+..++..++..|.+|-+ ..+.+..+..++.+|..|+.+|.+.
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds 178 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS 178 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence 222 233 36788899999988899999999999999965 4577889999999999999999988
Q ss_pred CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc-CCh---HHHHHHHHHHHHhHhccC
Q 004073 651 ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-GST---RGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 651 s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~-g~~---~~k~kA~~LL~~L~~~~~ 712 (775)
-.-+|..|+-.|..|.+.++...+.+.-+.++..|..++.. |.. -+-+-+..+|.+|-+...
T Consensus 179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 88899999999999999887777777778899999988865 212 345666666665544433
|
|
| >COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=4e-05 Score=86.16 Aligned_cols=75 Identities=27% Similarity=0.323 Sum_probs=67.4
Q ss_pred CCCCCCCCccccccccccccCceecC-CCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004073 274 GQMPLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 349 (775)
Q Consensus 274 ~~~~~~p~~f~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 349 (775)
.+..++|++|..|++..+|+|||++| +|.|.||+.|..++-. ..|.|..|.||+-.+.+||-.||.-|-.|....
T Consensus 846 ED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k 921 (929)
T COG5113 846 EDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCK 921 (929)
T ss_pred hhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence 35678999999999999999999996 6999999999999875 568999999999999999999999999886543
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0052 Score=67.41 Aligned_cols=276 Identities=17% Similarity=0.139 Sum_probs=181.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc-------cCchHHHHHHhchhccCCCHHHHHHHHHHHHH
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-------NGFVVALLRFLESAVCERNSYAQEIGAMALFN 499 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~-------~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~n 499 (775)
.+-.++..++.....+...-++..+-.+..++. .|..+.. .-.-+..+++|.. .|.-+++.+.+.|..
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~-sr~~lf~~~a~~~k~~~~~~fl~ll~r----~d~~iv~~~~~Ils~ 140 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDR-SRVDLFHDYAHKLKRTEWLSFLNLLNR----QDTFIVEMSFRILSK 140 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCc-hHHHHHHHHHHhhhccchHHHHHHHhc----CChHHHHHHHHHHHH
Confidence 344455555443234555556666666665543 2222211 1235677888877 688888878888888
Q ss_pred hhccCCchhHHHHhhC-cHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhh-cCCCCHHHHHH
Q 004073 500 LAVNNNRNKELMLAAG-VIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELC-KGKTEHQCKLD 574 (775)
Q Consensus 500 Ls~~~~~nk~~i~~~G-~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL-~~~~~~~~k~~ 574 (775)
++..... +....+-. ....|...++++.. ..-|+..|-.+...+++|..+....++..|+..| .+..+.+.+-.
T Consensus 141 la~~g~~-~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYq 219 (442)
T KOG2759|consen 141 LACFGNC-KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQ 219 (442)
T ss_pred HHHhccc-cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHH
Confidence 8753222 21111111 23444555655332 3557778888999999999999888889999988 44457899999
Q ss_pred HHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCC-ChHHHHHHHHHHHHHhCCcccH-------HHHhhC----------
Q 004073 575 ALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPG-DPMWTEKSLAVLLNLAASAAGK-------EEMNST---------- 636 (775)
Q Consensus 575 Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~-~~~i~e~al~~L~nLa~~~e~~-------~~i~~~---------- 636 (775)
.+-+++-|+.++.-...+-..+.|+.|.+++.+. ...+..-+++++.||......+ ..++..
T Consensus 220 sifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~ 299 (442)
T KOG2759|consen 220 SIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLE 299 (442)
T ss_pred HHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHH
Confidence 9999999999998888887789999999999763 4667788999999999877422 222220
Q ss_pred -----------------------------------------------------------------CCcHHHHHHHhcCC-
Q 004073 637 -----------------------------------------------------------------PGLVSGLATVLDTG- 650 (775)
Q Consensus 637 -----------------------------------------------------------------~g~I~~Lv~lL~~~- 650 (775)
-..+..|+++|...
T Consensus 300 ~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~ 379 (442)
T KOG2759|consen 300 ERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN 379 (442)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC
Confidence 01122333333321
Q ss_pred CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 651 ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 651 s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
+|.+-.-|+.=+...-+..|+.+..+.+-|+=..++.|+.+.++++|-.|...++.|-
T Consensus 380 Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 380 DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 2332223333333333344677788888899999999999999999999998887664
|
|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.1e-05 Score=80.05 Aligned_cols=53 Identities=19% Similarity=0.464 Sum_probs=41.8
Q ss_pred Ccccccccccc-ccCce----ecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 004073 281 EELRCPISLQL-MYDPV----IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLT 333 (775)
Q Consensus 281 ~~f~CPIs~~~-m~dPV----~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~ 333 (775)
++..||+|..- ...|= +.+|||+||++||.+.|..|...||.|+.++....+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 46789999982 33442 2379999999999998888888999999998766643
|
All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.5e-05 Score=56.00 Aligned_cols=40 Identities=33% Similarity=0.282 Sum_probs=37.6
Q ss_pred ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhh
Q 004073 458 DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 458 ~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 501 (775)
+++++..+++.|+||.|+++|.+ .+..+|++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~----~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKS----PDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTS----SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcC----CCHHHHHHHHHHHHHHh
Confidence 47899999999999999999997 89999999999999996
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0077 Score=67.14 Aligned_cols=270 Identities=14% Similarity=0.117 Sum_probs=192.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 509 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~ 509 (775)
.+...+.+. +.+++..+.+.+|.+..+. +.-..+.+.+.--.++.-|.... .+..-+++|+..+..+.. -..+..
T Consensus 29 ~i~~~lL~~-~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~--~~~~ER~QALkliR~~l~-~~~~~~ 103 (371)
T PF14664_consen 29 RIQCMLLSD-SKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDN--KNDVEREQALKLIRAFLE-IKKGPK 103 (371)
T ss_pred HHHHHHCCC-cHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccC--CChHHHHHHHHHHHHHHH-hcCCcc
Confidence 333356666 6899999999999999874 44555667676666677776532 344556889888887743 222222
Q ss_pred HHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC
Q 004073 510 LMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS 587 (775)
Q Consensus 510 ~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~ 587 (775)
-+..|++..|+.+....++ +..|.++|..++..+ -..+..+||+..|++.+-++ ..+..+..+.++..+-..+.
T Consensus 104 -~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~-~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 104 -EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDG-SFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred -cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhc-cHhHHHHHHHHHHHHhCCcc
Confidence 2366889999999988665 467888998887653 34566689999999999987 77788999999999988888
Q ss_pred ChHHHHHcCcHHHHHHhccCC-------Ch--HHHHHHHHHHHHHhCCcccHHHHhhCC-CcHHHHHHHhcCCCHHHHHH
Q 004073 588 NIPNLLSAGIISGLQSLAVPG-------DP--MWTEKSLAVLLNLAASAAGKEEMNSTP-GLVSGLATVLDTGELIEQEQ 657 (775)
Q Consensus 588 nk~~iv~aG~V~~Lv~LL~~~-------~~--~i~e~al~~L~nLa~~~e~~~~i~~~~-g~I~~Lv~lL~~~s~~~~e~ 657 (775)
.|..+...--+..++.-+.+. +. .....+..++..+-.+..|-..+.... .++..|+..|...++.+++.
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 887766544455555533221 22 233456666666667777777766543 68999999999999999999
Q ss_pred HHHHHHHhhcCC-----------------hHh-----------------------------------HHHHHHCCCHHHH
Q 004073 658 AVSCLFLLCNGN-----------------EKC-----------------------------------CQMVLQEGVIPAL 685 (775)
Q Consensus 658 Av~~L~~Lc~~~-----------------~~~-----------------------------------~~~v~~~G~i~~L 685 (775)
.+.+|..+-.-. ... ....++.|.++.|
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L 339 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEAL 339 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHH
Confidence 999888774210 000 2234567999999
Q ss_pred HHhhhcC-ChHHHHHHHHHHHHhH
Q 004073 686 VSISVNG-STRGRDKAQRLLMLFR 708 (775)
Q Consensus 686 v~Ll~~g-~~~~k~kA~~LL~~L~ 708 (775)
+.+..+. ++....||.-||..+-
T Consensus 340 ~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 340 VELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHH
Confidence 9998887 8889999999887553
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00083 Score=73.70 Aligned_cols=242 Identities=14% Similarity=0.138 Sum_probs=166.6
Q ss_pred hHHhhccCchHHHHHHhchhccCCCH--HHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh---HHHHHHH
Q 004073 462 RVFTGANGFVVALLRFLESAVCERNS--YAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATAL 536 (775)
Q Consensus 462 r~~i~~~G~I~~Lv~lL~s~~~~~d~--~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~---~~~Aaaa 536 (775)
+..|...|++..|++++.+ .+. .++..+...|-.+. ..+|+..++.-| +..|+.+-+-..+ ....+.+
T Consensus 173 CD~iR~~~~lD~Llrmf~a----Pn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~i 245 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQA----PNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGI 245 (832)
T ss_pred hhHhhccchHHHHHHHHhC----CchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHH
Confidence 3457778999999999987 444 44678888887774 367888888766 4455555433222 2446777
Q ss_pred Hhccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC--CCChHHHHHcCcHHHHHHhccCCChHHH
Q 004073 537 YLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI--PSNIPNLLSAGIISGLQSLAVPGDPMWT 613 (775)
Q Consensus 537 L~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~--~~nk~~iv~aG~V~~Lv~LL~~~~~~i~ 613 (775)
|.++-.+ ++....+.+.|++..++-..+.. ++....+++-||.|++.+ ...+.+||+..+-+.|..|-.+.+.-++
T Consensus 246 l~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R 324 (832)
T KOG3678|consen 246 LEHMFKHSEETCQRLVAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLR 324 (832)
T ss_pred HHHHhhhhHHHHHHHHhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHH
Confidence 7776654 44566777789999998888887 899999999999999865 4589999999999999998877777777
Q ss_pred HHHHHHHHHHhCCcccHHHHhhC------------------------------CCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004073 614 EKSLAVLLNLAASAAGKEEMNST------------------------------PGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 614 e~al~~L~nLa~~~e~~~~i~~~------------------------------~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
-.|+-+.+.|+.+.+.-..+..+ ..-+..|+.+|.+ .+.-..++++++
T Consensus 325 ~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS--~R~EAq~i~AF~ 402 (832)
T KOG3678|consen 325 LHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDS--NRLEAQCIGAFY 402 (832)
T ss_pred HHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhc--chhhhhhhHHHH
Confidence 88888888888876544433321 1224445555542 222334444443
Q ss_pred Hhhc---CChHh-HHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccCC
Q 004073 664 LLCN---GNEKC-CQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 664 ~Lc~---~~~~~-~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
-.+. .+... ....-+-|+|+.|-.+..+.+..+-.-|...|+.+.+.-+.
T Consensus 403 l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP~ 456 (832)
T KOG3678|consen 403 LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVPY 456 (832)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccCh
Confidence 2221 11122 33444559999999998877777777888899988765544
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0069 Score=67.48 Aligned_cols=256 Identities=16% Similarity=0.090 Sum_probs=174.7
Q ss_pred HHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccC
Q 004073 448 VEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS 527 (775)
Q Consensus 448 l~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~ 527 (775)
+..|..+.+..++.|..+.-.-.++.+..++-+ ++..++..|..++..+. .+...-..+.+.+.--.++.-|...
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~----~~~~vraa~yRilRy~i-~d~~~l~~~~~l~id~~ii~SL~~~ 78 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLS----DSKEVRAAGYRILRYLI-SDEESLQILLKLHIDIFIIRSLDRD 78 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCchhhHhhhccc
Confidence 345666677777777776666666666654444 45888888999998885 4677777777877666677777654
Q ss_pred C----hHHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHH
Q 004073 528 N----SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS 603 (775)
Q Consensus 528 ~----~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~ 603 (775)
. +++.|...+..+.........+ ..|++..||.+..+. +...+..|+.+|..|+.. |-..++.+||+..|++
T Consensus 79 ~~~~~ER~QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~-~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~ 154 (371)
T PF14664_consen 79 NKNDVEREQALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHE-DDRLRRICLETLCELALL--NPELVAECGGIRVLLR 154 (371)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHH
Confidence 3 2567888877665554332223 368899999999987 889999999999999863 3346678999999999
Q ss_pred hccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCC-------C---HHHHHHHHHHHHHhhcCChHhH
Q 004073 604 LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG-------E---LIEQEQAVSCLFLLCNGNEKCC 673 (775)
Q Consensus 604 LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~-------s---~~~~e~Av~~L~~Lc~~~~~~~ 673 (775)
.+.++...+.+.++.++..+-.++..|.-+... --+..++.-.... . ...+..+..+...|-+.+ .-.
T Consensus 155 ~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~-~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~-GLl 232 (371)
T PF14664_consen 155 ALIDGSFSISESLLDTLLYLLDSPRTRKYLRPG-FDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP-GLL 232 (371)
T ss_pred HHHhccHhHHHHHHHHHHHHhCCcchhhhhcCC-ccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC-cee
Confidence 777776668899999999999999998877653 2344444433321 1 123333333333333333 121
Q ss_pred HHHHHC-CCHHHHHHhhhcCChHHHHHHHHHHHHhHhccCCC
Q 004073 674 QMVLQE-GVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 674 ~~v~~~-G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~~~ 714 (775)
..-... .++..|+..+..+++++|+....+|.-+=+...-.
T Consensus 233 ~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~ 274 (371)
T PF14664_consen 233 YLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPS 274 (371)
T ss_pred eeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCC
Confidence 111122 47888999999999999999988877666555443
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.59 E-value=5.7e-05 Score=56.33 Aligned_cols=40 Identities=38% Similarity=0.375 Sum_probs=37.3
Q ss_pred CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC
Q 004073 586 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 586 ~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~ 625 (775)
++|+..++++|+||+|+.+|.+++..+++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4678899999999999999999999999999999999984
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
Probab=97.57 E-value=5.9e-05 Score=57.27 Aligned_cols=41 Identities=20% Similarity=0.525 Sum_probs=35.3
Q ss_pred ccccccccc---cCceecCCCCccchHHHHHHHhcCCCCCCCCCC
Q 004073 284 RCPISLQLM---YDPVIIASGQTYERICIEKWLSDGHSTCPKTQQ 325 (775)
Q Consensus 284 ~CPIs~~~m---~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~ 325 (775)
.||||.+.+ ..|++++|||+||..||.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 389999988 457888999999999999999 45678999974
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.003 Score=73.93 Aligned_cols=238 Identities=15% Similarity=0.167 Sum_probs=154.1
Q ss_pred hHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc---hhHHHHhhCcHHHHHHHhccCCh---------HHHHHHHHh
Q 004073 471 VVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR---NKELMLAAGVIPLLEKMISNSNS---------HGAATALYL 538 (775)
Q Consensus 471 I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~---nk~~i~~~G~i~~Lv~lL~s~~~---------~~~AaaaL~ 538 (775)
+..-+++|++ .+-.-+-.|+..+-++...++. .+..+.++=+.+-|-++|+++.. ..-|+++|.
T Consensus 7 l~~c~~lL~~----~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 7 LEKCLSLLKS----ADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHhcc----CCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 4556678877 4423334555566666543332 24456676668899999987431 244888888
Q ss_pred cccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHH
Q 004073 539 NLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLA 618 (775)
Q Consensus 539 ~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~ 618 (775)
.++..++....-.-.+-||.|++.+.+..+.....+|+.+|..++..++.+..+++.|+|+.|++.+.+ .....+.|+.
T Consensus 83 ~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 83 AFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred HHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence 888866554322224789999999988733499999999999999999999999999999999998876 3445699999
Q ss_pred HHHHHhCCcccHHHHhhCCC----cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHh-HHHHHHCC----CHHHHHHhh
Q 004073 619 VLLNLAASAAGKEEMNSTPG----LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKC-CQMVLQEG----VIPALVSIS 689 (775)
Q Consensus 619 ~L~nLa~~~e~~~~i~~~~g----~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~-~~~v~~~G----~i~~Lv~Ll 689 (775)
+|.+++.... ...+-.+.. .+..|...........+-.++..|..+-...+.. ........ +..-|..++
T Consensus 162 lL~~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 162 LLLNLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 9999987543 222212222 3344444444444455666677777766544211 12222223 333445556
Q ss_pred hc-CChHHHHHHHHHHHHhHhccCCC
Q 004073 690 VN-GSTRGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 690 ~~-g~~~~k~kA~~LL~~L~~~~~~~ 714 (775)
.+ -++..|..|..+...|-+....+
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 55 46777888888887777764433
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0095 Score=67.20 Aligned_cols=131 Identities=16% Similarity=0.042 Sum_probs=69.3
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHh-
Q 004073 556 VPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN- 634 (775)
Q Consensus 556 i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~- 634 (775)
.++|..+|++. ++.++..|+.+|..|- ...+++.|...+.+.++.++..|+..|..+-. ++....+.
T Consensus 149 ~~~L~~~L~d~-d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 149 GPALEAALTHE-DALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHH
Confidence 45555555555 5555555555555542 12344445555555555555555555544322 11111110
Q ss_pred --------------------hCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCCh
Q 004073 635 --------------------STPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGST 694 (775)
Q Consensus 635 --------------------~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~ 694 (775)
..+..++.|..+++. +.+++.++.+|..+-.. .+++.|+..+.+.
T Consensus 217 ~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d--~~vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~-- 281 (410)
T TIGR02270 217 FQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQA--AATRREALRAVGLVGDV-----------EAAPWCLEAMREP-- 281 (410)
T ss_pred HHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcC--hhhHHHHHHHHHHcCCc-----------chHHHHHHHhcCc--
Confidence 011334445555543 22555555555544332 3688888877544
Q ss_pred HHHHHHHHHHHHhHhccCC
Q 004073 695 RGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 695 ~~k~kA~~LL~~L~~~~~~ 713 (775)
..++.|...++.+.+.+-.
T Consensus 282 ~~aR~A~eA~~~ItG~~l~ 300 (410)
T TIGR02270 282 PWARLAGEAFSLITGMDVA 300 (410)
T ss_pred HHHHHHHHHHHHhhCCCcc
Confidence 4999999999999875544
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.46 E-value=7.9e-05 Score=76.42 Aligned_cols=54 Identities=20% Similarity=0.430 Sum_probs=46.9
Q ss_pred CCCC-CccccccccccccCceecCCCCccchHHHHH-HHhcCCCCCCCCCCCCCCC
Q 004073 277 PLPP-EELRCPISLQLMYDPVIIASGQTYERICIEK-WLSDGHSTCPKTQQKLPHL 330 (775)
Q Consensus 277 ~~~p-~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~-w~~~~~~~CP~t~~~l~~~ 330 (775)
+-+| .+|.|+||++.|.+|+-.+|||.||=.||-. |-.+....||.||+...+.
T Consensus 209 pfip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 209 PFIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred CcccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 3344 7899999999999999999999999999999 8877677899999876544
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=6.9e-05 Score=81.29 Aligned_cols=52 Identities=27% Similarity=0.445 Sum_probs=47.4
Q ss_pred cccccccccccCceecC-CCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004073 283 LRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn 335 (775)
|.|.|++++-++||+.+ +||.|||+.|++++.+ +.+||+|+++|+..+|+|-
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~I 53 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVEI 53 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeeec
Confidence 57999999999999985 8999999999999987 7799999999998888763
|
|
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00016 Score=81.01 Aligned_cols=68 Identities=26% Similarity=0.469 Sum_probs=57.5
Q ss_pred CCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc-cHHHHHHHHHHHH
Q 004073 279 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP-NYCVKGLIASWCE 347 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~p-n~~l~~~i~~~~~ 347 (775)
+.+++.||+|..++.||+.. .|||.||+.||.+|+.. +..||.|++.+......| -..++..+..|-.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i 87 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLPI 87 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhccc
Confidence 56889999999999999994 99999999999999988 889999999887776665 3456777766633
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.033 Score=67.37 Aligned_cols=258 Identities=11% Similarity=0.027 Sum_probs=165.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+...+..+.+. +.+.|+-+--.|...++.+++.-. -+|..|.+-|.+ .|+.++-.|+.+|.++-. +
T Consensus 68 ~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d----~Np~IRaLALRtLs~Ir~--~ 135 (746)
T PTZ00429 68 YLFVDVVKLAPST-DLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTN----SSPVVRALAVRTMMCIRV--S 135 (746)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCC----CCHHHHHHHHHHHHcCCc--H
Confidence 5566666666666 888888888888888876655321 123445555554 799999999998888732 1
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
. + -.-.++.+.+.|...+. +..|+-++..+-.. +...+-..|.++.|.++|.+. ++.+..+|+.+|+.+.
T Consensus 136 ~----i-~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~--~pelv~~~~~~~~L~~LL~D~-dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 136 S----V-LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD--DMQLFYQQDFKKDLVELLNDN-NPVVASNAAAIVCEVN 207 (746)
T ss_pred H----H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--CcccccccchHHHHHHHhcCC-CccHHHHHHHHHHHHH
Confidence 1 1 12356667777776665 45555555555332 223444568899999999988 9999999999999998
Q ss_pred CCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004073 584 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 584 ~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
........ ...+.+..|+..|.+.+.-.+-..+.+|.... +...... ...+..+...|.+.++.+.=.|+.+++
T Consensus 208 ~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il 281 (746)
T PTZ00429 208 DYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVA 281 (746)
T ss_pred HhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 65443322 33556677777776666665666666664422 2222221 246777788888888999999999999
Q ss_pred HhhcCC-hHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 664 LLCNGN-EKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 664 ~Lc~~~-~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
++.... ++....+. ..+.++|+.|+ ++.+++|--+..-|..+....
T Consensus 282 ~l~~~~~~~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~ 328 (746)
T PTZ00429 282 NLASRCSQELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALLVIF 328 (746)
T ss_pred HhcCcCCHHHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC
Confidence 887542 22211111 11235566663 566778877776665555433
|
|
| >KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00015 Score=80.25 Aligned_cols=73 Identities=23% Similarity=0.446 Sum_probs=61.3
Q ss_pred CCCCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCC-----CCcccHHHHHHHHHHHHH
Q 004073 275 QMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL-----CLTPNYCVKGLIASWCEM 348 (775)
Q Consensus 275 ~~~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~-----~l~pn~~l~~~i~~~~~~ 348 (775)
....++.+|-|-||...+.+||+++|||+||+.||.+.++ ...-||.|+.++... ...+|+.+..+|..++..
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456789999999999999999999999999999999777 367899999988742 345678888888888765
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.045 Score=66.19 Aligned_cols=249 Identities=12% Similarity=0.055 Sum_probs=163.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
+..+-..|.+. +...+++|++.|-.....+.+. .-+.+-.++++.+ .|...+.-....|.+++..+++.
T Consensus 34 ~~ELr~~L~s~-~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S----~d~elKKLvYLYL~~ya~~~pel 102 (746)
T PTZ00429 34 GAELQNDLNGT-DSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPS----TDLELKKLVYLYVLSTARLQPEK 102 (746)
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcccChHH
Confidence 44555667777 7778888888776655443322 2345566777777 78888888888888886432221
Q ss_pred hHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 004073 508 KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 585 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~ 585 (775)
.. =++..|.+=|.+.+. +..|..+|.++-..+ +. .-.++++.+.|.+. ++-+++.|+.++..|-..
T Consensus 103 -al----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i~-e~l~~~lkk~L~D~-~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 103 -AL----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----VL-EYTLEPLRRAVADP-DPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred -HH----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhh
Confidence 11 145666776776665 455666666543211 11 23467778888887 999999999999999643
Q ss_pred CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004073 586 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 665 (775)
Q Consensus 586 ~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~L 665 (775)
.. ..+.+.|.++.|.++|.+.++.++..|+.+|..+.......-.+. .+.+..|+..|...++..|-..+.+|...
T Consensus 171 ~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~--~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 171 DM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESS--NEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred Cc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 33 344567899999999999999999999999999986543332222 24577788888777888888766666432
Q ss_pred hcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 666 CNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 666 c~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
.-.+.... ..++..+...+.+.++-+.-.|.+++-.+.
T Consensus 247 ~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 247 RPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred CCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 21111111 134555555566667777777776665554
|
|
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00017 Score=80.34 Aligned_cols=71 Identities=24% Similarity=0.453 Sum_probs=56.9
Q ss_pred CccccccccccccCceecCCCCccchHHHHHHHhc----CCCCCCCCCCCCCCCCCcccH----HHHHHHHHHHHHcCC
Q 004073 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSD----GHSTCPKTQQKLPHLCLTPNY----CVKGLIASWCEMNGV 351 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~----~~~~CP~t~~~l~~~~l~pn~----~l~~~i~~~~~~~~i 351 (775)
.+..||||++-..=|+...|||.||=.||-.+|.. +...||.|+..+...+|.|-+ .-+.-++..+..||+
T Consensus 185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~ 263 (513)
T KOG2164|consen 185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGI 263 (513)
T ss_pred cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCC
Confidence 38999999999999999999999999999998863 456799999988877666632 234446667777773
|
|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00026 Score=59.99 Aligned_cols=39 Identities=33% Similarity=0.763 Sum_probs=32.1
Q ss_pred cccccccccCc-------------eecCCCCccchHHHHHHHhcCCCCCCCCC
Q 004073 285 CPISLQLMYDP-------------VIIASGQTYERICIEKWLSDGHSTCPKTQ 324 (775)
Q Consensus 285 CPIs~~~m~dP-------------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~ 324 (775)
|+||++-|.|| +..+|||.|-..||.+|+.. +.+||.||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 99999999554 33489999999999999986 45999996
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D .... |
| >KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0002 Score=75.72 Aligned_cols=65 Identities=15% Similarity=0.367 Sum_probs=54.9
Q ss_pred CCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCC----CCcccHHHHHHHHH
Q 004073 279 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHL----CLTPNYCVKGLIAS 344 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~----~l~pn~~l~~~i~~ 344 (775)
+-....|++|..+|.|+-++ -|=|||||+||-++|.. ..+||.|+..+..+ .+.+..+|+.++..
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHH
Confidence 44578999999999999987 69999999999999998 88999999777654 36777788777744
|
|
| >COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00056 Score=70.68 Aligned_cols=66 Identities=27% Similarity=0.428 Sum_probs=56.8
Q ss_pred cccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCC-CCCCCCcccHHHHHHHHHHHHH
Q 004073 283 LRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQK-LPHLCLTPNYCVKGLIASWCEM 348 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~-l~~~~l~pn~~l~~~i~~~~~~ 348 (775)
+.||+|+.|++.|+-. +|||+||..||+..+-+....||.|... +--..|+|.+..+.-|+.+...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 9999999999999988 7899999999999988778899999653 3346799999888888887664
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.004 Score=64.44 Aligned_cols=180 Identities=17% Similarity=0.127 Sum_probs=108.8
Q ss_pred hcCCCHHHHHHHHHHHHHHhccC--hhhhHHhhc--cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHH
Q 004073 436 NEGENLGQKCNIVEQIRLLLKDD--EEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELM 511 (775)
Q Consensus 436 ~s~~~~~~q~~Al~~L~~Lak~~--~~nr~~i~~--~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i 511 (775)
.+. +|+.|.+|+..|+.+.+.+ ......+.+ ...+..+...+.+ ....+...|+.++..++..-. +...-
T Consensus 17 ~~~-~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d----~Rs~v~~~A~~~l~~l~~~l~-~~~~~ 90 (228)
T PF12348_consen 17 SES-DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD----LRSKVSKTACQLLSDLARQLG-SHFEP 90 (228)
T ss_dssp T-S-SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H----H---HHHHHHHHHHHHHHHHG-GGGHH
T ss_pred Ccc-CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHh-HhHHH
Confidence 344 9999999999999999887 333333332 2455666666665 566788889999888875322 22222
Q ss_pred HhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCc-hHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC-
Q 004073 512 LAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHA-VPFLVELCKGKTEHQCKLDALHALYNLSTIPS- 587 (775)
Q Consensus 512 ~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~-i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~- 587 (775)
.-...+|.|+..+..+.. ++.|..+|..+...-.+. ... ++.+...+.+. ++.++..++..|..+.....
T Consensus 91 ~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-----~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 91 YADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS-----PKILLEILSQGLKSK-NPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-----HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccc
Confidence 234588999999988765 466777776665543211 123 56666777777 99999999999999875444
Q ss_pred ChHHHHH----cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc
Q 004073 588 NIPNLLS----AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA 627 (775)
Q Consensus 588 nk~~iv~----aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~ 627 (775)
+...+-. ..+++.+...+.++++.+++.|-.++..+...-
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 2222222 346777888899999999999999999886543
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0073 Score=63.83 Aligned_cols=191 Identities=14% Similarity=0.132 Sum_probs=132.7
Q ss_pred HHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHH-hhCcHHHHHHHhccCChHHHHHHHHhcccccCCccccc
Q 004073 472 VALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELML-AAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPII 550 (775)
Q Consensus 472 ~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~-~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I 550 (775)
..|+.||.+ .++.++..|+.-|.+++. . ..+.... +.-.++.+..++......+.|+.+|-|++.....+..+
T Consensus 6 ~elv~ll~~----~sP~v~~~AV~~l~~lt~-~-~~~~~~~~~~~~lk~l~qL~~~~~~~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 6 VELVELLHS----LSPPVRKAAVEHLLGLTG-R-GLQSLSKYSEALLKDLTQLLKDLDPAEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHhcc----CChHHHHHHHHHHhhccc-c-chhhhccchhhhHHHHHHHccCcccccHHHHHHHHHHhhHHHHHHH
Confidence 357888988 788999999999999964 2 3333322 23478888999877665678999999999998887777
Q ss_pred cccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHH--c----CcHHHHHH-hccCC-C-hHHHHHHHHHHH
Q 004073 551 GSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS--A----GIISGLQS-LAVPG-D-PMWTEKSLAVLL 621 (775)
Q Consensus 551 ~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~--a----G~V~~Lv~-LL~~~-~-~~i~e~al~~L~ 621 (775)
.+. .+..|++++-+. ....-+..+..|.||+..++-...+.. . .++..|+. +...+ + ..-....+-++.
T Consensus 80 l~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 655 888999999877 556778899999999988775544432 2 33444444 33332 1 122367888999
Q ss_pred HHhCCcccHHHHhhCCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCh
Q 004073 622 NLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNE 670 (775)
Q Consensus 622 nLa~~~e~~~~i~~~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~ 670 (775)
||+....||.-+....-+....+..+.. ++.--+...+++|.|.|-...
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~ 207 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAK 207 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccch
Confidence 9999999999887642111111111222 445557788999999887653
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.013 Score=64.75 Aligned_cols=231 Identities=16% Similarity=0.160 Sum_probs=155.5
Q ss_pred HHHHHHHHHhcCCCHHH--HHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 427 RYQDFLNVLNEGENLGQ--KCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~--q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
.+..|+.++.+. +.+. +.++.+.|..+.. .+||..++.-| +..++.+-+. ...++.+...+..|.++=.++
T Consensus 181 ~lD~Llrmf~aP-n~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~---~e~~e~aR~~~~il~~mFKHS 253 (832)
T KOG3678|consen 181 GLDLLLRMFQAP-NLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKE---REPVELARSVAGILEHMFKHS 253 (832)
T ss_pred hHHHHHHHHhCC-chhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhh---cCcHHHHHHHHHHHHHHhhhh
Confidence 344567777777 5544 8888888888775 47888888866 5555554443 256788888899999986666
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC--CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD--DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY 580 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~--~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~ 580 (775)
++....+++.|++..++-..+..+. ...++-+|.|++.+. +.+..|.+..+-+-|.-|-.+. +.-.+-+|+-|..
T Consensus 254 eet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk-Del~R~~AClAV~ 332 (832)
T KOG3678|consen 254 EETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK-DELLRLHACLAVA 332 (832)
T ss_pred HHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch-HHHHHHHHHHHHh
Confidence 6667888999999998888776655 366778888877653 4566677666667777776666 7889999999999
Q ss_pred HhcCCCCChHHHHHcC---cHHHHHHhccCC-------------ChHH-------------HHHHHHHHHHHhC----Cc
Q 004073 581 NLSTIPSNIPNLLSAG---IISGLQSLAVPG-------------DPMW-------------TEKSLAVLLNLAA----SA 627 (775)
Q Consensus 581 nLs~~~~nk~~iv~aG---~V~~Lv~LL~~~-------------~~~i-------------~e~al~~L~nLa~----~~ 627 (775)
-|+++.+.-..+-+.| .|++|+..++.+ .+.+ -..++++....+. ..
T Consensus 333 vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~ 412 (832)
T KOG3678|consen 333 VLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSL 412 (832)
T ss_pred hhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHh
Confidence 9999888777766666 445555544311 0111 1234444433222 23
Q ss_pred ccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004073 628 AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 665 (775)
Q Consensus 628 e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~L 665 (775)
.|+..+...-|+|..|-++.++.+......|-.+|--|
T Consensus 413 Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 413 QGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred ccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 45555555558899988888866555555555555444
|
|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00022 Score=83.14 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=49.2
Q ss_pred CccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004073 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP 334 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~p 334 (775)
.-++||.|..=.+|-|++.|||.||-.||++-+......||.|+..+...++.|
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 457999999999999999999999999999999987899999999998777655
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.051 Score=66.37 Aligned_cols=266 Identities=16% Similarity=0.151 Sum_probs=166.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|.+. +.+++.+|-+.+..+..... .++.|..++... .|+.++.-|+-.++.+....-
T Consensus 4 ~~l~qLl~~l~sp-Dn~vr~~Ae~~l~~~~~~~~----------~l~~L~~i~~~~---~~p~~Rq~aaVl~Rkl~~~~w 69 (1075)
T KOG2171|consen 4 APLEQLLQQLLSP-DNEVRRQAEEALETLAKTEP----------LLPALAHILATS---ADPQVRQLAAVLLRKLLTKHW 69 (1075)
T ss_pred hHHHHHHHHhcCC-CchHHHHHHHHHHHhhcccc----------hHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHh
Confidence 4577889999998 88889999999988876532 678888888774 788888777777777753211
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.+-..=.....-..|+..+.+... +..-+-++..++..+--- .=.+.++.|++-++++ ++..++.|+.+|+++
T Consensus 70 ~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~-~~~~rE~al~il~s~ 145 (1075)
T KOG2171|consen 70 SRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSP-NPSLRESALLILSSL 145 (1075)
T ss_pred hcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCC-CcchhHHHHHHHHhh
Confidence 010001112233344555544432 334444444444432111 1157788888888898 999999999999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHHHhc----CCCHHHHHH
Q 004073 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLD----TGELIEQEQ 657 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~----~~s~~~~e~ 657 (775)
...-.|...=.=....+.+.+-+.+++..++-.|+.++...+..-+ +....-.-...+|.++..+. .++.+.-..
T Consensus 146 ~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~ 225 (1075)
T KOG2171|consen 146 PETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKS 225 (1075)
T ss_pred hhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHH
Confidence 8655553321001123333444556555588899998888876443 33322222245676666665 466666777
Q ss_pred HHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC--ChHHHHHHHHHHHHhHhc
Q 004073 658 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG--STRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 658 Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g--~~~~k~kA~~LL~~L~~~ 710 (775)
+..+|-.+....+......+.. ++..-+.+..+. ++.+|..|..+|-.+.+.
T Consensus 226 ~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 226 ALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 8888888877665554444332 444445555553 678888888888777776
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.064 Score=61.47 Aligned_cols=240 Identities=16% Similarity=0.142 Sum_probs=156.2
Q ss_pred CCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccC-CCHHHHHHHHHHHHHhhccCCchhHHHHh-hCc
Q 004073 439 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCE-RNSYAQEIGAMALFNLAVNNNRNKELMLA-AGV 516 (775)
Q Consensus 439 ~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~-~d~~~qe~A~~aL~nLs~~~~~nk~~i~~-~G~ 516 (775)
.+.++..+|++.|.++.-.++..|..+.+.|..+.++..|+..... .+.++.--....|+-++......+..+++ .++
T Consensus 44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~ 123 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHG 123 (446)
T ss_pred CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Confidence 3789999999999999999999999999999999999999874221 25667777777777776545556666664 578
Q ss_pred HHHHHHHhcc--------CC--------h---HHHHHHHHhcccccCCccccccccCchHHHHHhhcC--------CCCH
Q 004073 517 IPLLEKMISN--------SN--------S---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKG--------KTEH 569 (775)
Q Consensus 517 i~~Lv~lL~s--------~~--------~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~--------~~~~ 569 (775)
+..|+..|.. .. . ...+..++||+.........-...+.++.|+.+|.. ....
T Consensus 124 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~ 203 (446)
T PF10165_consen 124 VELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLD 203 (446)
T ss_pred HHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcch
Confidence 8888877632 00 1 134777788887754433321124556666665431 1134
Q ss_pred HHHHHHHHHHHHhcCCC-C-------ChHH----HHHcCcHHHHHHhccC----C---C-hHHHHHHHHHHHHHhCCcc-
Q 004073 570 QCKLDALHALYNLSTIP-S-------NIPN----LLSAGIISGLQSLAVP----G---D-PMWTEKSLAVLLNLAASAA- 628 (775)
Q Consensus 570 ~~k~~Al~aL~nLs~~~-~-------nk~~----iv~aG~V~~Lv~LL~~----~---~-~~i~e~al~~L~nLa~~~e- 628 (775)
....+++.+|.|+-... . +... -....++..|+.+|.. . . .....-.+.+|.+++....
T Consensus 204 ~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~ 283 (446)
T PF10165_consen 204 PPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAARE 283 (446)
T ss_pred hhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHH
Confidence 57888888888882110 0 0101 1123366777777642 1 1 1334567778888887643
Q ss_pred cHHHHhh---------------CCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCC
Q 004073 629 GKEEMNS---------------TPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEG 680 (775)
Q Consensus 629 ~~~~i~~---------------~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G 680 (775)
.|..+.. ....-..|++++.+..+.++..+...|+.||..+ ..+.+..-|
T Consensus 284 ~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d--~~~~v~~~G 348 (446)
T PF10165_consen 284 VRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED--ASRFVKYVG 348 (446)
T ss_pred HHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh--HHHHHHHcC
Confidence 3333322 3345667999998888999999999999999876 344444444
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.083 Score=58.44 Aligned_cols=240 Identities=14% Similarity=0.107 Sum_probs=167.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh---------hhhHHhhccCchHHHHHHhchhccC--CCHHHHHHHH
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE---------EARVFTGANGFVVALLRFLESAVCE--RNSYAQEIGA 494 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~---------~nr~~i~~~G~I~~Lv~lL~s~~~~--~d~~~qe~A~ 494 (775)
..+..|+..|.+. +.++-..++.-|..|+..+. ..-..+++.++++.||+-+..-..+ ++.....+++
T Consensus 125 n~V~slL~LLgHe-NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 125 NAVQSLLELLGHE-NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred ccHHHHHHHhcCC-CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 4577888999888 89999999999999987531 2334577889999999888652111 2234456667
Q ss_pred HHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh----HHHHHHHHhcc-cccCCccccccccCchHHHHHhhc-----
Q 004073 495 MALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS----HGAATALYLNL-SFLDDAKPIIGSSHAVPFLVELCK----- 564 (775)
Q Consensus 495 ~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~----~~~AaaaL~~L-s~~~~~k~~I~~~g~i~~LV~LL~----- 564 (775)
..+-|+..-.+.-...+++.|.+..|+.-+..... ...|.-+|.-+ ...++++...+.-.+|..|++-+.
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 78888876555566777788877776665544321 34566666544 344568889998888888887663
Q ss_pred C---CCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHH---HHhhCCC
Q 004073 565 G---KTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE---EMNSTPG 638 (775)
Q Consensus 565 ~---~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~---~i~~~~g 638 (775)
+ +...+..++-...|+.+...+.|+.+++...+++...=++.. ....+-.++.+|-.+..++++.. .+++. +
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~-l 361 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEI-L 361 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHH-H
Confidence 2 113567888889999999999999999999888877666655 33445778999999888887554 55553 5
Q ss_pred cHHHHHHHhc----------CCCHHHHHHHHHHHHHhhcC
Q 004073 639 LVSGLATVLD----------TGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 639 ~I~~Lv~lL~----------~~s~~~~e~Av~~L~~Lc~~ 668 (775)
|...+..+.- ......-|+.+.+|+++-.+
T Consensus 362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 5555554432 12345678888899888653
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.035 Score=66.44 Aligned_cols=117 Identities=10% Similarity=0.121 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhccChhhhHHhhc----cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHH
Q 004073 443 QKCNIVEQIRLLLKDDEEARVFTGA----NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIP 518 (775)
Q Consensus 443 ~q~~Al~~L~~Lak~~~~nr~~i~~----~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~ 518 (775)
.-.-++.+|+++.+.+++.-..++. -|-.+.+..+|... .++.+|.-|+.++..+.. +.+...-|++.|++.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~---~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCR---KHPKLQILALQVILLATA-NKECVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHc---CCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHH
Confidence 3345788999999988865554433 37778888888763 678899999998888754 677888899999999
Q ss_pred HHHHHhccCCh-HHHHHHHHhcccccCCccccccccCchHHHHHhh
Q 004073 519 LLEKMISNSNS-HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELC 563 (775)
Q Consensus 519 ~Lv~lL~s~~~-~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL 563 (775)
.|+.+|.+..+ ++.+.-+|+.|+.+.+.-..-.+.|++.-+..++
T Consensus 1817 ~LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~ 1862 (2235)
T KOG1789|consen 1817 TLLTLLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSIL 1862 (2235)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHH
Confidence 99999998665 7778888888887765444444456555555444
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.037 Score=63.44 Aligned_cols=265 Identities=16% Similarity=0.146 Sum_probs=168.5
Q ss_pred HHHHHHHHhccChhhhHHhhccCchHHHHHHhc------hhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHH
Q 004073 447 IVEQIRLLLKDDEEARVFTGANGFVVALLRFLE------SAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLL 520 (775)
Q Consensus 447 Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~------s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~L 520 (775)
++..||.+.++ +.+-..+....++..|+++-. ......+..+...|+.+|.|+...++..|...++.|+.+.+
T Consensus 1 ~L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 35677777765 445556666666777766551 11223678899999999999988778889888999999999
Q ss_pred HHHhccCC-----h--HHHHHHHHhcccc-cCCccccccc-cCchHHHHHhhcC--------C--------CCHHHHHHH
Q 004073 521 EKMISNSN-----S--HGAATALYLNLSF-LDDAKPIIGS-SHAVPFLVELCKG--------K--------TEHQCKLDA 575 (775)
Q Consensus 521 v~lL~s~~-----~--~~~AaaaL~~Ls~-~~~~k~~I~~-~g~i~~LV~LL~~--------~--------~~~~~k~~A 575 (775)
+..|+... . .--...+||.+.. ..+.+..+.. .+++..|+..|.. . .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 99998762 2 2337777776554 3445544444 5777777766531 0 145678889
Q ss_pred HHHHHHhcCCCCChHHHHHcCcHHHHHHhcc------C---CChHHHHHHHHHHHHHhCC-ccc-------HHHH---hh
Q 004073 576 LHALYNLSTIPSNIPNLLSAGIISGLQSLAV------P---GDPMWTEKSLAVLLNLAAS-AAG-------KEEM---NS 635 (775)
Q Consensus 576 l~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~------~---~~~~i~e~al~~L~nLa~~-~e~-------~~~i---~~ 635 (775)
+++|||+..+......--..+.++.|+.++. . +.....-.++.+|.|+--. ... ...+ ..
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 9999999865443332233455555555432 1 1234456777888877211 010 0000 11
Q ss_pred CCCcHHHHHHHhcC----CC----HHHHHHHHHHHHHhhcCChHhHHHHHHC--------------C--CHHHHHHhhhc
Q 004073 636 TPGLVSGLATVLDT----GE----LIEQEQAVSCLFLLCNGNEKCCQMVLQE--------------G--VIPALVSISVN 691 (775)
Q Consensus 636 ~~g~I~~Lv~lL~~----~s----~~~~e~Av~~L~~Lc~~~~~~~~~v~~~--------------G--~i~~Lv~Ll~~ 691 (775)
....+..|+.+|.. .. ...-.-.+.+|..+|..+...++.+... | .-..|+.|+.+
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS 319 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence 23467778888762 11 1334455667777777664555555442 2 45578999999
Q ss_pred CChHHHHHHHHHHHHhHhccC
Q 004073 692 GSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 692 g~~~~k~kA~~LL~~L~~~~~ 712 (775)
..+.+|..+..+|..|++...
T Consensus 320 ~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 320 PDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred CCchHHHHHHHHHHHHHhhhH
Confidence 999999999999988876544
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0072 Score=67.83 Aligned_cols=183 Identities=13% Similarity=0.074 Sum_probs=133.5
Q ss_pred HHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhcc
Q 004073 447 IVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISN 526 (775)
Q Consensus 447 Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s 526 (775)
++..|..+.+.-.-.|.-+.++...++|+++|+. ++..+.--+...+.|+....+.-+..+.+.|.|..|+.++.+
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~----Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN----PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC----ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 3445555555545567778888999999999987 566666667788999877666678889999999999999987
Q ss_pred CCh--HHHHHHHHhcccccCCcc--ccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC-CC---hHHHHHcC--
Q 004073 527 SNS--HGAATALYLNLSFLDDAK--PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SN---IPNLLSAG-- 596 (775)
Q Consensus 527 ~~~--~~~AaaaL~~Ls~~~~~k--~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~-~n---k~~iv~aG-- 596 (775)
.++ +.+..|.+..+..++++- -...+.-++..++.+.+++ ...++...+..|.|+..+. .| +.-.+++-
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~ 563 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR 563 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence 655 577899999888776543 3444566789999999998 9999999999999996532 22 33333322
Q ss_pred --cHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHh
Q 004073 597 --IISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN 634 (775)
Q Consensus 597 --~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~ 634 (775)
....|++.+...++-..+..+.+|.++|.+.+....++
T Consensus 564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V 603 (743)
T COG5369 564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIV 603 (743)
T ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHH
Confidence 22334444555666666777888988888877766544
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0026 Score=46.75 Aligned_cols=39 Identities=28% Similarity=0.276 Sum_probs=35.5
Q ss_pred hhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhh
Q 004073 459 EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 459 ~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 501 (775)
++++..+.+.|+|+.|+.+|.+ .+..++..|+++|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~----~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKS----EDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHc
Confidence 4588889999999999999986 78999999999999996
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0029 Score=46.47 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=36.4
Q ss_pred CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC
Q 004073 586 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 586 ~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~ 625 (775)
++++..+++.|+++.|+++|.+++..++..++++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3478889999999999999998899999999999999973
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.17 Score=56.03 Aligned_cols=234 Identities=15% Similarity=0.071 Sum_probs=162.0
Q ss_pred HHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc----C-Cc----hhHHHHhhCcH
Q 004073 447 IVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN----N-NR----NKELMLAAGVI 517 (775)
Q Consensus 447 Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~----~-~~----nk~~i~~~G~i 517 (775)
.+.++..+|.- ++.--.+++.++++.|+.+|.. +|.++-...+..|..|+-. . .+ -...+++.+++
T Consensus 104 ~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgH----eNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl 178 (536)
T KOG2734|consen 104 IIQEMHVLATM-PDLYPILVELNAVQSLLELLGH----ENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL 178 (536)
T ss_pred HHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcC----CCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence 45666666654 6677778999999999999998 7888888888888888621 1 11 14455678899
Q ss_pred HHHHHHhccCCh--------HHHHHHHHhcccccC-CccccccccCchHHHHHhhc-CCCCHHHHHHHHHHHHHhcCCCC
Q 004073 518 PLLEKMISNSNS--------HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCK-GKTEHQCKLDALHALYNLSTIPS 587 (775)
Q Consensus 518 ~~Lv~lL~s~~~--------~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~-~~~~~~~k~~Al~aL~nLs~~~~ 587 (775)
+.|+.-+..-+. ..++.+++.|+...+ +....+.+.|.+.-|+.-+. .+.-..-+..|..+|.-+-.+.+
T Consensus 179 aLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~ 258 (536)
T KOG2734|consen 179 ALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD 258 (536)
T ss_pred HHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc
Confidence 999988865322 245777777776543 45556666676666665333 22123456777788877776554
Q ss_pred -ChHHHHHcCcHHHHHHhcc-----C---C-ChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHH
Q 004073 588 -NIPNLLSAGIISGLQSLAV-----P---G-DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ 657 (775)
Q Consensus 588 -nk~~iv~aG~V~~Lv~LL~-----~---~-~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~ 657 (775)
|+..+-...+|..|++-+. + . ...+.+.....|+.+...++++..++.. .++... .++-......+..
T Consensus 259 e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~-EGlqLm-~Lmlr~Kk~sr~S 336 (536)
T KOG2734|consen 259 ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKG-EGLQLM-NLMLREKKVSRGS 336 (536)
T ss_pred hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcc-ccHHHH-HHHHHHHHHhhhh
Confidence 8888888999999988552 1 1 2455566777777777789999999986 445543 3443335567788
Q ss_pred HHHHHHHhhcCCh--HhHHHHHHCCCHHHHHH
Q 004073 658 AVSCLFLLCNGNE--KCCQMVLQEGVIPALVS 687 (775)
Q Consensus 658 Av~~L~~Lc~~~~--~~~~~v~~~G~i~~Lv~ 687 (775)
|+.+|-.+..+.+ .++...++.++...+..
T Consensus 337 alkvLd~am~g~~gt~~C~kfVe~lGLrtiF~ 368 (536)
T KOG2734|consen 337 ALKVLDHAMFGPEGTPNCNKFVEILGLRTIFP 368 (536)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhHHHHHH
Confidence 9999988776654 67888888887777763
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.015 Score=65.37 Aligned_cols=185 Identities=14% Similarity=0.040 Sum_probs=133.9
Q ss_pred HHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCChH--HHHHHHHhccccc-CCccccccccCchHHHHHhhcCCCCHH
Q 004073 494 AMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQ 570 (775)
Q Consensus 494 ~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~ 570 (775)
+.+|..++.+-.--|.-+.+..+..+|+.+|..+..+ ..+...++|+..- ..-+..+...|.|..|++++.+. +..
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK-Dda 488 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK-DDA 488 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-hhh
Confidence 3444555432222355566778999999999997764 3477777777654 44466666789999999999988 889
Q ss_pred HHHHHHHHHHHhcCCCCC--hHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc----ccHHHHhh---CCCcHH
Q 004073 571 CKLDALHALYNLSTIPSN--IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA----AGKEEMNS---TPGLVS 641 (775)
Q Consensus 571 ~k~~Al~aL~nLs~~~~n--k~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~----e~~~~i~~---~~g~I~ 641 (775)
.+.+..|.|++|..+.++ +-+.+..-++..++++.+++...+++.++.+|.|+.-+. +.+.-... ..-...
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 999999999999876543 566777889999999999999999999999999996522 12221111 112345
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHC
Q 004073 642 GLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE 679 (775)
Q Consensus 642 ~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~ 679 (775)
.|++.+....|-..+..+.+|.+++..+..-.+.+.+.
T Consensus 569 ~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q 606 (743)
T COG5369 569 RLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQ 606 (743)
T ss_pred HHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhH
Confidence 67777888888877788999998887765555655544
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0031 Score=54.64 Aligned_cols=85 Identities=25% Similarity=0.364 Sum_probs=68.7
Q ss_pred hHHHHHhh-cCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHh
Q 004073 556 VPFLVELC-KGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMN 634 (775)
Q Consensus 556 i~~LV~LL-~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~ 634 (775)
||.|++.| +++ ++.++..|+.+|.++- ...+++.|++++.++++.++..|+.+|..+-
T Consensus 1 i~~L~~~l~~~~-~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDP-DPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSS-SHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCC-CHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 68999999 666 9999999999998441 2246999999999999999999999999772
Q ss_pred hCCCcHHHHHHHhcCC-CHHHHHHHHHHH
Q 004073 635 STPGLVSGLATVLDTG-ELIEQEQAVSCL 662 (775)
Q Consensus 635 ~~~g~I~~Lv~lL~~~-s~~~~e~Av~~L 662 (775)
. ...++.|.+++.+. +..++..|+.+|
T Consensus 60 ~-~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 D-PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp H-HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 1 35789999999875 556688888876
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.027 Score=54.77 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=97.7
Q ss_pred ccccCchHHHHHhhcCCCC-----HHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCC--ChHHHHHHHHHHHH
Q 004073 550 IGSSHAVPFLVELCKGKTE-----HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPG--DPMWTEKSLAVLLN 622 (775)
Q Consensus 550 I~~~g~i~~LV~LL~~~~~-----~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~--~~~i~e~al~~L~n 622 (775)
+.+.||+..|++++.++.. ......++.|+..|-.++-.-...++.-.|...+.+++.. +..+...|+++|.+
T Consensus 7 FI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs 86 (160)
T PF11841_consen 7 FISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILES 86 (160)
T ss_pred HHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHH
Confidence 3447899999999998832 3677889999999877666566667777888888877543 68889999999999
Q ss_pred HhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 004073 623 LAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN 669 (775)
Q Consensus 623 La~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 669 (775)
++.+....-..+..+=.++.|+..|..+++.+|.+|++.+-+|....
T Consensus 87 ~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 87 IVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 99988876666665678999999999999999999999999988643
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.013 Score=60.67 Aligned_cols=180 Identities=16% Similarity=0.094 Sum_probs=108.6
Q ss_pred CCHHHHHHHHHHHHHhhccC--CchhHHHHh--hCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHH
Q 004073 485 RNSYAQEIGAMALFNLAVNN--NRNKELMLA--AGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPF 558 (775)
Q Consensus 485 ~d~~~qe~A~~aL~nLs~~~--~~nk~~i~~--~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~ 558 (775)
.|-..+..|+.-|..+..++ ......+.. ...+..++..+.+..+ ...|+.++..|+..-.....-.....+|.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~ 98 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPP 98 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 68888999999998887544 222333322 1455566666655443 25577777666654332221112468899
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhC--
Q 004073 559 LVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST-- 636 (775)
Q Consensus 559 LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~-- 636 (775)
|++.+.++ +..+++.|..+|..++.+-.....+ .++.+...+.+.++.++..++..|..+.............
T Consensus 99 Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 99 LLKKLGDS-KKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHGGG----HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHccc-cHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 99999998 8899999999999998754411121 1455666778889999999999998887654411111111
Q ss_pred --CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 004073 637 --PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN 669 (775)
Q Consensus 637 --~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 669 (775)
...++.+...+.+.++.+|+.|-.+++.+...-
T Consensus 174 ~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 246788888899999999999999999987643
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.28 Score=53.79 Aligned_cols=185 Identities=19% Similarity=0.184 Sum_probs=128.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..++..+.+. +..++..|+..+..+. ..-+++.|..+|.+ .+..++..|+.+|..+- +
T Consensus 44 ~~~~~~~~l~~~-~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d----~~~~vr~~a~~aLg~~~--~-- 103 (335)
T COG1413 44 AADELLKLLEDE-DLLVRLSAAVALGELG-----------SEEAVPLLRELLSD----EDPRVRDAAADALGELG--D-- 103 (335)
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcC----CCHHHHHHHHHHHHccC--C--
Confidence 455666677766 7888888887754433 23568899999988 78889999998777762 1
Q ss_pred hhHHHHhhCcHHHHHHHhcc-CCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCH------------HH
Q 004073 507 NKELMLAAGVIPLLEKMISN-SNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEH------------QC 571 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s-~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~------------~~ 571 (775)
..+++.|+..|.+ .+. +..|+.+|..+- ...++.+|+.++.+. .. ..
T Consensus 104 -------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~-~~~~a~~~~~~~~~~~ 165 (335)
T COG1413 104 -------PEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDE-DSGSAAAALDAALLDV 165 (335)
T ss_pred -------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccc-hhhhhhhhccchHHHH
Confidence 2367888999985 443 466777776433 345589999999886 42 23
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCC
Q 004073 572 KLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGE 651 (775)
Q Consensus 572 k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s 651 (775)
+..++.+|..+- ..-.++.|.+++.+....++..+..+|..+.... ...+..+...+...+
T Consensus 166 r~~a~~~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~ 226 (335)
T COG1413 166 RAAAAEALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDES 226 (335)
T ss_pred HHHHHHHHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCC
Confidence 444444444331 2236778888888887788888998888876644 245677888888888
Q ss_pred HHHHHHHHHHHHHhhcC
Q 004073 652 LIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 652 ~~~~e~Av~~L~~Lc~~ 668 (775)
..++..++..|..+-..
T Consensus 227 ~~vr~~~~~~l~~~~~~ 243 (335)
T COG1413 227 LEVRKAALLALGEIGDE 243 (335)
T ss_pred HHHHHHHHHHhcccCcc
Confidence 88888877777665443
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.057 Score=52.54 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=98.4
Q ss_pred HHHHHcCcHHHHHHhccCCC------hHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHHHhcCC--CHHHHHHHHH
Q 004073 590 PNLLSAGIISGLQSLAVPGD------PMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTG--ELIEQEQAVS 660 (775)
Q Consensus 590 ~~iv~aG~V~~Lv~LL~~~~------~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~~~--s~~~~e~Av~ 660 (775)
..++..||+..|+.++.++. ..+...++.++..|-.+.. +++.+- ..+|..++..+... ++.+.+.|++
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~--~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLS--DSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhcc--HHHHHHHHHHHccccccchHHHHHHH
Confidence 46788999999999998765 3666778999999988765 565443 36899999999853 5889999999
Q ss_pred HHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 661 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 661 ~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
+|-++..+++.....+.++=-++.|+..+...++..+.+|..|+..|---
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 99999999877778888887899999999999999999999999766533
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.013 Score=50.76 Aligned_cols=85 Identities=25% Similarity=0.350 Sum_probs=65.9
Q ss_pred hHHHHHHh-chhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCcc
Q 004073 471 VVALLRFL-ESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAK 547 (775)
Q Consensus 471 I~~Lv~lL-~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k 547 (775)
||.|++.| .+ .++.++..++.+|.++- ...++|.|+.++++++. +..|+.+|..+
T Consensus 1 i~~L~~~l~~~----~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i------- 58 (88)
T PF13646_consen 1 IPALLQLLQND----PDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRI------- 58 (88)
T ss_dssp HHHHHHHHHTS----SSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHhcC----CCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-------
Confidence 68899988 44 79999999999998552 12469999999987765 46688888765
Q ss_pred ccccccCchHHHHHhhcCCCCHHHHHHHHHHHH
Q 004073 548 PIIGSSHAVPFLVELCKGKTEHQCKLDALHALY 580 (775)
Q Consensus 548 ~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~ 580 (775)
+...+++.|.+++.++.+..++..|+.+|.
T Consensus 59 ---~~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 ---GDPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 346789999999988746677899998874
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.11 Score=58.89 Aligned_cols=147 Identities=16% Similarity=0.057 Sum_probs=100.6
Q ss_pred HHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHH
Q 004073 517 IPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS 594 (775)
Q Consensus 517 i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~ 594 (775)
+..|+..|...+. +..++.+|. .|+..++.+.|+.+|++. ++.++..++.++.. ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg----------~i~~~~a~~~L~~~L~~~-~p~vR~aal~al~~-----------r~ 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALG----------WLGGRQAEPWLEPLLAAS-EPPGRAIGLAALGA-----------HR 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHh----------cCCchHHHHHHHHHhcCC-ChHHHHHHHHHHHh-----------hc
Confidence 6777777776654 233444443 344567888999999888 88888888877766 12
Q ss_pred cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHH
Q 004073 595 AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQ 674 (775)
Q Consensus 595 aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~ 674 (775)
....+.|..+|.+.++.+...|+.+|..|-. ...++.|...+.+.++.++..|+..|..+-..
T Consensus 146 ~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~------ 208 (410)
T TIGR02270 146 HDPGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSR------ 208 (410)
T ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCH------
Confidence 3356678888888889999999999987643 35678888888889999999999988665331
Q ss_pred HHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004073 675 MVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 675 ~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
+++..|..+...........+..++.+.
T Consensus 209 -----~A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 209 -----LAWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred -----hHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 2345666644444444444444455543
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.18 Score=58.10 Aligned_cols=264 Identities=14% Similarity=0.139 Sum_probs=165.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHH-HHHHHHHhhccCCchh
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEI-GAMALFNLAVNNNRNK 508 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~-A~~aL~nLs~~~~~nk 508 (775)
.+.+.+... ....|..++..+..+.++.. -..+.+.+++..|-..+.. ........ +..+.-.... +-
T Consensus 138 ~l~~ll~~~-~~~~~~~aa~~~ag~v~g~~--i~~~~~~~~l~~l~~ai~d----k~~~~~re~~~~a~~~~~~----~L 206 (569)
T KOG1242|consen 138 LLLELLTST-KIAERAGAAYGLAGLVNGLG--IESLKEFGFLDNLSKAIID----KKSALNREAALLAFEAAQG----NL 206 (569)
T ss_pred HHHHHhccc-cHHHHhhhhHHHHHHHcCcH--HhhhhhhhHHHHHHHHhcc----cchhhcHHHHHHHHHHHHH----hc
Confidence 344455555 78899999999999998753 3346667888888888875 22222222 2111111111 11
Q ss_pred HHHHhhCcHHHHHHHhccCCh-----HHHHHHHHh-cccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 509 ELMLAAGVIPLLEKMISNSNS-----HGAATALYL-NLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 509 ~~i~~~G~i~~Lv~lL~s~~~-----~~~AaaaL~-~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
....+.+.+|.+-.+|.+-.+ ++.|..+.. .+.+.+.+ +..-.+|+++.-+... ..+.+.+++..|..+
T Consensus 207 g~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~----aVK~llpsll~~l~~~-kWrtK~aslellg~m 281 (569)
T KOG1242|consen 207 GPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY----AVKLLLPSLLGSLLEA-KWRTKMASLELLGAM 281 (569)
T ss_pred CCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc----hhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHH
Confidence 123466778888888865322 233322222 12222211 1123456666666665 789999999999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHH--HHh----h---------------------
Q 004073 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE--EMN----S--------------------- 635 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~--~i~----~--------------------- 635 (775)
+....-.....-..+||.|.+.|.+..+.+++.+..+|..+++.-++-. .++ +
T Consensus 282 ~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttF 361 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTF 361 (569)
T ss_pred HHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceee
Confidence 8888888788888999999999999999999999999998876333222 000 0
Q ss_pred ----CCCcHHHHHHHhcC----CCHHHHHHHHHHHHHhhcC--ChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHH-
Q 004073 636 ----TPGLVSGLATVLDT----GELIEQEQAVSCLFLLCNG--NEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL- 704 (775)
Q Consensus 636 ----~~g~I~~Lv~lL~~----~s~~~~e~Av~~L~~Lc~~--~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL- 704 (775)
.+-.+..++.+|.+ .+...+..++.+.+|+|+- ++....-.+. -.+|.|-..+.+..|++|.-|...|
T Consensus 362 V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 362 VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALG 440 (569)
T ss_pred eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHH
Confidence 12345566666654 3556778889999999974 3322222211 2556666666667899999999888
Q ss_pred HHhHhc
Q 004073 705 MLFREQ 710 (775)
Q Consensus 705 ~~L~~~ 710 (775)
.++.+.
T Consensus 441 ~l~e~~ 446 (569)
T KOG1242|consen 441 ALLERL 446 (569)
T ss_pred HHHHHH
Confidence 444443
|
|
| >KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0026 Score=66.54 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=45.3
Q ss_pred cccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCC-Ccc
Q 004073 283 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC-LTP 334 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~-l~p 334 (775)
-.|+||+.-|.-||.++|+|.||--||+--...+..+||+|+.+++++. +.|
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~p 60 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEP 60 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcch
Confidence 3699999999999999999999999999876667789999999997753 444
|
|
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0045 Score=53.36 Aligned_cols=49 Identities=29% Similarity=0.531 Sum_probs=36.6
Q ss_pred CCccccccccccccC-ceec-CCCCccchHHHHHHHhc--CCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYD-PVII-ASGQTYERICIEKWLSD--GHSTCPKTQQKLP 328 (775)
Q Consensus 280 p~~f~CPIs~~~m~d-PV~~-~~G~ty~r~~I~~w~~~--~~~~CP~t~~~l~ 328 (775)
+-+-.||.|...=.| |++. .|||.|-..||.+|++. .+.+||.||++..
T Consensus 30 ~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 30 PFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 334456666555445 6555 89999999999999984 4679999999753
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.88 Score=50.50 Aligned_cols=231 Identities=11% Similarity=0.079 Sum_probs=160.0
Q ss_pred CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHh-------hCcHHHHHHHhccCCh--HHHHHHHHhc
Q 004073 469 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA-------AGVIPLLEKMISNSNS--HGAATALYLN 539 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~-------~G~i~~Lv~lL~s~~~--~~~AaaaL~~ 539 (775)
-.+.+++.+++.- ...++....+..+-.+- +.+..+..+.. .-..+..+.+|..++. .+.+..++..
T Consensus 65 ~~v~~fi~LlS~~---~kdd~v~yvL~li~DmL-s~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~ 140 (442)
T KOG2759|consen 65 QYVKTFINLLSHI---DKDDTVQYVLTLIDDML-SEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSK 140 (442)
T ss_pred HHHHHHHHHhchh---hhHHHHHHHHHHHHHHH-hhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3566778888752 33445555555555553 24444444432 1246778888888776 3557788877
Q ss_pred ccccCCccccccccC-chHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhc-c-CCChHHHHHH
Q 004073 540 LSFLDDAKPIIGSSH-AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA-V-PGDPMWTEKS 616 (775)
Q Consensus 540 Ls~~~~~k~~I~~~g-~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL-~-~~~~~i~e~a 616 (775)
++.....+...++.. ....|-..+.+..+.+...-|+.+|.-+...++-|..++.+.++..|+..+ + ..+..++-..
T Consensus 141 la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqs 220 (442)
T KOG2759|consen 141 LACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQS 220 (442)
T ss_pred HHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHH
Confidence 777655554443333 234555666664478888999999999999999999999999999999977 3 2567888999
Q ss_pred HHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCh------HhHHHHHHCCCHHHHHHhh
Q 004073 617 LAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNE------KCCQMVLQEGVIPALVSIS 689 (775)
Q Consensus 617 l~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~------~~~~~v~~~G~i~~Lv~Ll 689 (775)
+-.++.|.-++...+.+ ...+.|+.|+++++. .-.++..-+++++.|++...+ +....++..++.+.+-.|.
T Consensus 221 ifciWlLtFn~~~ae~~-~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~ 299 (442)
T KOG2759|consen 221 IFCIWLLTFNPHAAEKL-KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLE 299 (442)
T ss_pred HHHHHHhhcCHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHH
Confidence 99999999888777666 446999999999985 456777788899999997653 4456677777777666665
Q ss_pred hcC--ChHHHHHHHHHH
Q 004073 690 VNG--STRGRDKAQRLL 704 (775)
Q Consensus 690 ~~g--~~~~k~kA~~LL 704 (775)
..+ ++....--..|-
T Consensus 300 ~rkysDEDL~~di~~L~ 316 (442)
T KOG2759|consen 300 ERKYSDEDLVDDIEFLT 316 (442)
T ss_pred hcCCCcHHHHHHHHHHH
Confidence 543 444444333333
|
|
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0036 Score=66.46 Aligned_cols=54 Identities=13% Similarity=0.311 Sum_probs=43.4
Q ss_pred CCCccccccccccccC--c-ee-cCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004073 279 PPEELRCPISLQLMYD--P-VI-IASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP 334 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~d--P-V~-~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~p 334 (775)
-...|.||||+..|.. + |. .+|||+|...+|..-- ....||+|++++...+++|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 3568999999999954 2 33 3999999999999873 3567999999999877654
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0032 Score=68.32 Aligned_cols=46 Identities=22% Similarity=0.561 Sum_probs=40.2
Q ss_pred cccccccccccC--c-eecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 283 LRCPISLQLMYD--P-VIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 283 f~CPIs~~~m~d--P-V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
+.|-||+|-+.+ - +++||+|.|-..||..|+...+.+||+|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 899999998874 3 367999999999999999987788999998653
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.2 Score=54.92 Aligned_cols=180 Identities=24% Similarity=0.238 Sum_probs=120.7
Q ss_pred CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCChH--HHHHHHHhcccccCCc
Q 004073 469 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFLDDA 546 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~~ 546 (775)
-.++.++++|.+ .+..++..|+..|..+. ..-++|.|..+|...+.. ..|+.+|.
T Consensus 43 ~~~~~~~~~l~~----~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg-------- 99 (335)
T COG1413 43 EAADELLKLLED----EDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALG-------- 99 (335)
T ss_pred hhHHHHHHHHcC----CCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHH--------
Confidence 467888888887 67888888887755542 234788999999887763 33444332
Q ss_pred cccccccCchHHHHHhhcC-CCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChH------------HH
Q 004073 547 KPIIGSSHAVPFLVELCKG-KTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPM------------WT 613 (775)
Q Consensus 547 k~~I~~~g~i~~LV~LL~~-~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~------------i~ 613 (775)
.++...++++|+++|.+ . +..++..|..+|..+-. ..++.+|+.++.+.... ++
T Consensus 100 --~~~~~~a~~~li~~l~~d~-~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r 166 (335)
T COG1413 100 --ELGDPEAVPPLVELLENDE-NEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVR 166 (335)
T ss_pred --ccCChhHHHHHHHHHHcCC-cHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHH
Confidence 33345689999999994 6 99999999999998843 22488888888765422 22
Q ss_pred HHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCC
Q 004073 614 EKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGS 693 (775)
Q Consensus 614 e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~ 693 (775)
..++..|..+ ..+..++.+...+......++..|+.+|..+...+ ..+.+.++..+.+..
T Consensus 167 ~~a~~~l~~~-----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~ 226 (335)
T COG1413 167 AAAAEALGEL-----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDES 226 (335)
T ss_pred HHHHHHHHHc-----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCC
Confidence 2233333222 23467889999999988999999999999888764 223334444444445
Q ss_pred hHHHHHHHHHH
Q 004073 694 TRGRDKAQRLL 704 (775)
Q Consensus 694 ~~~k~kA~~LL 704 (775)
..++..+...|
T Consensus 227 ~~vr~~~~~~l 237 (335)
T COG1413 227 LEVRKAALLAL 237 (335)
T ss_pred HHHHHHHHHHh
Confidence 55544444444
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.14 Score=58.36 Aligned_cols=230 Identities=11% Similarity=0.088 Sum_probs=151.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc-cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+...-|+.+|... +.++|.-+=..|..+.++= .+.-.-.+ ...++.|+.-+.+ .++.+|..|+.-|..+.. -
T Consensus 208 ~~ldGLf~~LsD~-s~eVr~~~~t~l~~fL~eI-~s~P~s~d~~~~i~vlv~~l~s----s~~~iq~~al~Wi~efV~-i 280 (675)
T KOG0212|consen 208 SLLDGLFNMLSDS-SDEVRTLTDTLLSEFLAEI-RSSPSSMDYDDMINVLVPHLQS----SEPEIQLKALTWIQEFVK-I 280 (675)
T ss_pred HHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHH-hcCccccCcccchhhccccccC----CcHHHHHHHHHHHHHHhc-C
Confidence 3445677778776 7777755544444443320 01111112 4567788887877 799999999988888743 2
Q ss_pred CchhHHHHhhCcHHHHHHHhccCChH-HHHHHH-----HhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNSH-GAATAL-----YLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA 578 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~~-~~Aaaa-----L~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~a 578 (775)
..+.....-+|++..+...+.....+ ..-++. |..+......+..|.-...+..|.+.+.+. ..+.+..++.-
T Consensus 281 ~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~-~~~tri~~L~W 359 (675)
T KOG0212|consen 281 PGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD-REETRIAVLNW 359 (675)
T ss_pred CCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc-hHHHHHHHHHH
Confidence 33333334567777777777665442 111222 223333333343333234688888999888 89999999999
Q ss_pred HHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHH
Q 004073 579 LYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQA 658 (775)
Q Consensus 579 L~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~A 658 (775)
+..|-....|+.......+.+.|+.-|.+.+..+...++.+|+++|.++....- -.++..|+++......-....+
T Consensus 360 i~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~----~~fl~sLL~~f~e~~~~l~~Rg 435 (675)
T KOG0212|consen 360 IILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL----RKFLLSLLEMFKEDTKLLEVRG 435 (675)
T ss_pred HHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH----HHHHHHHHHHHhhhhHHHHhhh
Confidence 999988888887777788999999999998899999999999999998876522 1234455555555555566777
Q ss_pred HHHHHHhhc
Q 004073 659 VSCLFLLCN 667 (775)
Q Consensus 659 v~~L~~Lc~ 667 (775)
.-|+..||.
T Consensus 436 ~lIIRqlC~ 444 (675)
T KOG0212|consen 436 NLIIRQLCL 444 (675)
T ss_pred hHHHHHHHH
Confidence 777777774
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.31 Score=56.99 Aligned_cols=217 Identities=15% Similarity=0.172 Sum_probs=134.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~-~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
....+++..|.+. -+-+|.+|+..+..+.-. .+..|. .+|.|+.=|.. +|+.+|-.|+.+++.||..+
T Consensus 144 DLa~Dv~tLL~ss-kpYvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeD----pDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 144 DLADDVFTLLNSS-KPYVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLED----PDPSVVSAAVSVICELARKN 212 (877)
T ss_pred HHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccC----CCchHHHHHHHHHHHHHhhC
Confidence 4556788889888 667888888777665543 333333 46888888887 89999999999999999877
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh-H--HHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHH-
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS-H--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY- 580 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~-~--~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~- 580 (775)
+.|-.. .-|.+.++|...+. + ..-.-+..+|+..+ ..+| ...+++|.+++.+..-....-.++.++.
T Consensus 213 PknyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplE---PRLg-KKLieplt~li~sT~AmSLlYECvNTVVa 283 (877)
T KOG1059|consen 213 PQNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE---PRLG-KKLIEPITELMESTVAMSLLYECVNTVVA 283 (877)
T ss_pred Cccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccC---chhh-hhhhhHHHHHHHhhHHHHHHHHHHHHhee
Confidence 777544 34667777755432 2 33333334454432 2333 3467888888876522222222333222
Q ss_pred -HhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHH
Q 004073 581 -NLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 659 (775)
Q Consensus 581 -nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av 659 (775)
|++....+....+.. +|+.|-.++.+.++.++--.+-++..++... -..+..+ -..++..|...++.++-.|+
T Consensus 284 ~s~s~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktH--p~~Vqa~---kdlIlrcL~DkD~SIRlrAL 357 (877)
T KOG1059|consen 284 VSMSSGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTH--PKAVQAH---KDLILRCLDDKDESIRLRAL 357 (877)
T ss_pred ehhccCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhC--HHHHHHh---HHHHHHHhccCCchhHHHHH
Confidence 344444466666655 6777777777777777777777776665432 1222222 24456666666777777777
Q ss_pred HHHHHhhcC
Q 004073 660 SCLFLLCNG 668 (775)
Q Consensus 660 ~~L~~Lc~~ 668 (775)
..|+.+.+.
T Consensus 358 dLl~gmVsk 366 (877)
T KOG1059|consen 358 DLLYGMVSK 366 (877)
T ss_pred HHHHHHhhh
Confidence 777776653
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0028 Score=70.28 Aligned_cols=51 Identities=20% Similarity=0.423 Sum_probs=43.7
Q ss_pred CCccccccccccccCceecCCCCccchHHHHHHHh---c-CCCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLS---D-GHSTCPKTQQKLPHL 330 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~---~-~~~~CP~t~~~l~~~ 330 (775)
..+..|-+|.+.-.||+...|.|+|||.||..|.. + .+-+||.|...|+-.
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 35789999999999999999999999999999865 2 356899998887644
|
|
| >KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0042 Score=64.89 Aligned_cols=58 Identities=19% Similarity=0.339 Sum_probs=46.2
Q ss_pred cccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 004073 283 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLI 342 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i 342 (775)
|.|-||.+.|.+||+..|||+||..|-.+.++. ...|++|++.. +..+.+..-|..+.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t-~g~~~~akeL~~~L 299 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQT-HGSFNVAKELLVSL 299 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccc-ccccchHHHHHHHH
Confidence 889999999999999999999999998888875 56899999875 44444444444333
|
|
| >KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.0032 Score=73.87 Aligned_cols=47 Identities=23% Similarity=0.619 Sum_probs=42.1
Q ss_pred CCccccccccccccC-----ceecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYD-----PVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 280 p~~f~CPIs~~~m~d-----PV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
..+-.|+||.|.|.. |-.++|||.|...|+.+|+.. ..+||.|+..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 447799999999999 788999999999999999987 77999998743
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.76 E-value=3.7 Score=50.30 Aligned_cols=138 Identities=20% Similarity=0.235 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhcCC-CCChHHHH----HcCcHHHHHHhcc-CCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHH
Q 004073 570 QCKLDALHALYNLSTI-PSNIPNLL----SAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGL 643 (775)
Q Consensus 570 ~~k~~Al~aL~nLs~~-~~nk~~iv----~aG~V~~Lv~LL~-~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~L 643 (775)
.-...++.||.||... ++-...+- =-|-.+.+..++. .+++.++..|+.++..+..+.+....+... +.+..|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~-~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATC-NVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhh-hHHHHH
Confidence 3567799999999754 43222211 1366666666664 467788899999999999999988888875 777777
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHH-hhhcCChHHHHHHHHHHHHhHhc
Q 004073 644 ATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS-ISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 644 v~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~-Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
+.+|. .-|.-++.++.+|++|++.. +......+.|++..+.. +..+.++..|..|+.||--|...
T Consensus 1819 L~lLH-S~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1819 LTLLH-SQPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHHh-cChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 77775 46888999999999999876 66777778887777764 55566788888889998777544
|
|
| >KOG2979 consensus Protein involved in DNA repair [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.0093 Score=61.39 Aligned_cols=62 Identities=27% Similarity=0.307 Sum_probs=44.8
Q ss_pred CccccccccccccCceec-CCCCccchHHHHHHHhc-CCCCCCCCCCC--C--CCCCCcccHHHHHHH
Q 004073 281 EELRCPISLQLMYDPVII-ASGQTYERICIEKWLSD-GHSTCPKTQQK--L--PHLCLTPNYCVKGLI 342 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~-~~~~CP~t~~~--l--~~~~l~pn~~l~~~i 342 (775)
-+++|||+......||+. .|||.|+|..|+..+.. -...||+-+-+ . ....+.+...++.-|
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kI 242 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKI 242 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHH
Confidence 368999999999999987 79999999999999864 24569995433 2 233444443444444
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.3 Score=58.64 Aligned_cols=270 Identities=14% Similarity=0.146 Sum_probs=154.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 509 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~ 509 (775)
.++.++.+. +-+.|.-|...|-.-...+.-+-..=.+...+..|+++|.. .+.++|..|+.+|.-|+..-.+.+.
T Consensus 9 ~Llekmtss-DKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D----~ngEVQnlAVKClg~lvsKvke~~l 83 (1233)
T KOG1824|consen 9 NLLEKMTSS-DKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED----KNGEVQNLAVKCLGPLVSKVKEDQL 83 (1233)
T ss_pred HHHHHccCC-CcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHhhchHHHH
Confidence 677777777 78888888887766554432111111235678889999987 7899999999999999743222221
Q ss_pred HHHhhCcHHHHHHHhccCChH---HHHHHHHhcccccCCccccccccCchHHHHHhhcCC-----CCHHHHHHHHHHHHH
Q 004073 510 LMLAAGVIPLLEKMISNSNSH---GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK-----TEHQCKLDALHALYN 581 (775)
Q Consensus 510 ~i~~~G~i~~Lv~lL~s~~~~---~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~-----~~~~~k~~Al~aL~n 581 (775)
. . .+..|..-+-++..+ ..+.+.....+.............+++.+...|..+ ....++-.++..|..
T Consensus 84 e---~-~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d 159 (1233)
T KOG1824|consen 84 E---T-IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILAD 159 (1233)
T ss_pred H---H-HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHH
Confidence 1 1 112222211222222 234444333333221111112233444444444322 123366666666665
Q ss_pred hcCCCC-ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc-CCCHHHHHHHH
Q 004073 582 LSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD-TGELIEQEQAV 659 (775)
Q Consensus 582 Ls~~~~-nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e~Av 659 (775)
.-+.-+ --.. ...+.+..|+.-+.+....++.+++.+|..|+..- ++.... +.|..|++=|. +.++....--+
T Consensus 160 ~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly~---~li~~Ll~~L~~~~q~~~~rt~I 234 (1233)
T KOG1824|consen 160 VLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLYV---ELIEHLLKGLSNRTQMSATRTYI 234 (1233)
T ss_pred HHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHHH---HHHHHHHhccCCCCchHHHHHHH
Confidence 543222 1111 44566777777777788889999999999998743 222222 34555555554 24555555566
Q ss_pred HHHHHhhcCChHhHHHHHHCCCHHHHHHhh---hcCChHHHHHHHHHHHHhHhccCCC
Q 004073 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSIS---VNGSTRGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 660 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll---~~g~~~~k~kA~~LL~~L~~~~~~~ 714 (775)
.+|..+|+.. .++---.-...+|.+.+.. ...+++.|++....|..|-...+.+
T Consensus 235 q~l~~i~r~a-g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 235 QCLAAICRQA-GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE 291 (1233)
T ss_pred HHHHHHHHHh-cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh
Confidence 7778888654 1221111223677777777 7789999999999998876665554
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.6 Score=54.01 Aligned_cols=220 Identities=18% Similarity=0.091 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
...+..|+..+... +..+|+.....|..+..... .....-+.+.+.+++.. .+..-+..|...+..+. +
T Consensus 95 ~~~~~~~~~~~~tp-s~~~q~~~~~~l~~~~~~~~----~~~~~~~l~~l~~ll~~----~~~~~~~~aa~~~ag~v--~ 163 (569)
T KOG1242|consen 95 ISIIEILLEELDTP-SKSVQRAVSTCLPPLVVLSK----GLSGEYVLELLLELLTS----TKIAERAGAAYGLAGLV--N 163 (569)
T ss_pred hHHHHHHHHhcCCC-cHHHHHHHHHHhhhHHHHhh----ccCHHHHHHHHHHHhcc----ccHHHHhhhhHHHHHHH--c
Confidence 45667778888877 88999998888877764322 11223456777888876 67777888888888884 2
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhc---CCCCHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK---GKTEHQCKLDALHA 578 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~---~~~~~~~k~~Al~a 578 (775)
...-..+.+.+.+..|...+..... ++.+.-+......+-. .-.+...++.|..+|. +. ...++.+|..+
T Consensus 164 g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~~d~-~~~Vr~Aa~~a 239 (569)
T KOG1242|consen 164 GLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSILTNFGDK-INKVREAAVEA 239 (569)
T ss_pred CcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHhhcc-chhhhHHHHHH
Confidence 3344555677888888888876543 3311111111111100 2233566666666664 33 45566655555
Q ss_pred HHHhcCCCCChHHHHHcCcHHH----HHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHH
Q 004073 579 LYNLSTIPSNIPNLLSAGIISG----LQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIE 654 (775)
Q Consensus 579 L~nLs~~~~nk~~iv~aG~V~~----Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~ 654 (775)
...+-.. +.+++|+. ++.-+.+..=..+..++..|..++.+...+-.... +..||.|.+.|-+..+.+
T Consensus 240 ~kai~~~-------~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~ev 311 (569)
T KOG1242|consen 240 AKAIMRC-------LSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKPEV 311 (569)
T ss_pred HHHHHHh-------cCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccCCHHH
Confidence 5444211 22333333 33322222223346788999999998877777766 489999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 004073 655 QEQAVSCLFLLCN 667 (775)
Q Consensus 655 ~e~Av~~L~~Lc~ 667 (775)
++.+..+|..+|+
T Consensus 312 r~a~~~~l~~~~s 324 (569)
T KOG1242|consen 312 RKAGIETLLKFGS 324 (569)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999986
|
|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.0086 Score=60.78 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=32.2
Q ss_pred CCCccccccccccccCceecCCCCccchHHHHHHHh
Q 004073 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLS 314 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~ 314 (775)
+-+.-+|.+|++.++|||+.+.||.|||.||..++-
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 444459999999999999999999999999999875
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.4 Score=56.16 Aligned_cols=259 Identities=13% Similarity=0.132 Sum_probs=158.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+.+|+.+|..+ ++.+|-.|+..|+.||+.++.|.-.+ -|.+.++|... .|-=+...-+....+|+--.+
T Consensus 181 ~~FprL~EkLeDp-Dp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttS---sNNWmLIKiiKLF~aLtplEP 251 (877)
T KOG1059|consen 181 PCFPRLVEKLEDP-DPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTS---SNNWVLIKLLKLFAALTPLEP 251 (877)
T ss_pred hhHHHHHHhccCC-CchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhcc---CCCeehHHHHHHHhhccccCc
Confidence 5678899999888 99999999999999999999886554 47788888652 232233445566667754333
Q ss_pred chhHHHHhhCcHHHHHHHhccCChHH---HHHHHHh--ccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHH
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNSHG---AATALYL--NLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL 579 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~~~---~AaaaL~--~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL 579 (775)
+-. .-.+|+|..++++..... .+.-++- +++.. .++-..| .-++..|-.++.+. ++-.+--++-|+
T Consensus 252 RLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fieds-DqNLKYlgLlam 323 (877)
T KOG1059|consen 252 RLG-----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDS-DQNLKYLGLLAM 323 (877)
T ss_pred hhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcC-CccHHHHHHHHH
Confidence 322 237899999998876321 1111111 23222 1222222 12456666777777 888999999999
Q ss_pred HHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCC-HHHHHHH
Q 004073 580 YNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGE-LIEQEQA 658 (775)
Q Consensus 580 ~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s-~~~~e~A 658 (775)
+.+.-.+ ...|.+ --..++..|.+.+..++-.|+..|.-+++. ++-.+ .|..|+..+...+ ..-+..-
T Consensus 324 ~KI~ktH---p~~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVsk-kNl~e------IVk~LM~~~~~ae~t~yrdel 392 (877)
T KOG1059|consen 324 SKILKTH---PKAVQA-HKDLILRCLDDKDESIRLRALDLLYGMVSK-KNLME------IVKTLMKHVEKAEGTNYRDEL 392 (877)
T ss_pred HHHhhhC---HHHHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhh-hhHHH------HHHHHHHHHHhccchhHHHHH
Confidence 8887432 233332 123456778899999999999999988763 23333 3455665554333 3667777
Q ss_pred HHHHHHhhcCChHhHHHHHHCC-CHHHHHHhhhc-CChHHHHHHHHHHHHhHhccCCC
Q 004073 659 VSCLFLLCNGNEKCCQMVLQEG-VIPALVSISVN-GSTRGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 659 v~~L~~Lc~~~~~~~~~v~~~G-~i~~Lv~Ll~~-g~~~~k~kA~~LL~~L~~~~~~~ 714 (775)
+.-+..+|+.+ +-+-+.+-. .+..|++|..- |+..+..-|-.++...-+.+.-+
T Consensus 393 l~~II~iCS~s--nY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR 448 (877)
T KOG1059|consen 393 LTRIISICSQS--NYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIR 448 (877)
T ss_pred HHHHHHHhhhh--hhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhh
Confidence 77778888765 222222222 34455555443 34555555555555544444333
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.33 Score=58.92 Aligned_cols=235 Identities=14% Similarity=0.021 Sum_probs=151.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHH--HHHHHHhhcc
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIG--AMALFNLAVN 503 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A--~~aL~nLs~~ 503 (775)
++++-.++-|.+ .--|..|+.-|..+..-++=.-..-..-|+.|-.++||.+ .-.+++-.- +|+ .-||.
T Consensus 472 eQLPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS----~a~ELrpiLVFIWA-KILAv- 542 (1387)
T KOG1517|consen 472 EQLPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS----SARELRPILVFIWA-KILAV- 542 (1387)
T ss_pred HhcchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc----chHhhhhhHHHHHH-HHHhc-
Confidence 444444554443 2345556666665555444333334457999999999998 333333222 222 22444
Q ss_pred CCchhHHHHhhCcHHHHHHHhccCCh-----HHHHHHHHhccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHH
Q 004073 504 NNRNKELMLAAGVIPLLEKMISNSNS-----HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALH 577 (775)
Q Consensus 504 ~~~nk~~i~~~G~i~~Lv~lL~s~~~-----~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~ 577 (775)
++.....+++.++-...+.+|..+.. +..|+-+|..+..+ .-.+..-.+.+.|..-+..|.++..+-.+.-++-
T Consensus 543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~i 622 (1387)
T KOG1517|consen 543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCI 622 (1387)
T ss_pred CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHH
Confidence 46677778888777778888876321 23344445444433 2233344445677777788887535778888889
Q ss_pred HHHHhcCC-CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC-----cccHHHH---h-------hCCCcHH
Q 004073 578 ALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-----AAGKEEM---N-------STPGLVS 641 (775)
Q Consensus 578 aL~nLs~~-~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~-----~e~~~~i---~-------~~~g~I~ 641 (775)
+|..|-.+ +++|-.=++.++...|+.+|.+.-+.++..|+-+|..+-++ ++....+ + ..+..|.
T Consensus 623 cLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~ 702 (1387)
T KOG1517|consen 623 CLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLII 702 (1387)
T ss_pred HHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHH
Confidence 99998754 45777777899999999999999999999999999998774 2221111 0 0123333
Q ss_pred ----HHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 004073 642 ----GLATVLDTGELIEQEQAVSCLFLLCNGN 669 (775)
Q Consensus 642 ----~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 669 (775)
.++.+++.+++-++...+-+|.....+.
T Consensus 703 ~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 703 KGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred hhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 7888888999999888888887776654
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.048 Score=49.15 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHh
Q 004073 444 KCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA 513 (775)
Q Consensus 444 q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~ 513 (775)
+...++.|.+++..+..++..+.+.|+||.++..-.- +..+|-+++.|+.+|.||...+.+|+..+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~i--D~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNI--DDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCC--CcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5567888999999999999999999999999987643 4478999999999999999888888887664
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.7 Score=49.56 Aligned_cols=243 Identities=16% Similarity=0.116 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHH
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPL 519 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~ 519 (775)
+.-.|..++.-|-.+..-+++.-...-..|.+..|..-|+.. .|.-+..+.+.....|+. .+..+..+.+.|.|..
T Consensus 184 ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt---eDtLVianciElvteLae-teHgreflaQeglIdl 259 (524)
T KOG4413|consen 184 NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT---EDTLVIANCIELVTELAE-TEHGREFLAQEGLIDL 259 (524)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC---cceeehhhHHHHHHHHHH-HhhhhhhcchhhHHHH
Confidence 445666777777777777777666667789888888877753 566677777777788874 5668888889999999
Q ss_pred HHHHhccCCh--HHH--HHH----HHhcccccCCccccccc--cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCCh
Q 004073 520 LEKMISNSNS--HGA--ATA----LYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNI 589 (775)
Q Consensus 520 Lv~lL~s~~~--~~~--Aaa----aL~~Ls~~~~~k~~I~~--~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk 589 (775)
|-.++...++ -+. ++- .+.+++..+..-..+.+ .-+|..-.+++... ++...+.|+.+|..|-++.+.+
T Consensus 260 icnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGSnteGa 338 (524)
T KOG4413|consen 260 ICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGSNTEGA 338 (524)
T ss_pred HHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccCCcchh
Confidence 9999976553 122 222 12233333322223322 23455666777777 8999999999999999999999
Q ss_pred HHHHHcC--cHHHHHH-hccCCChHHHHHHHHHHHHHhCC--------cccHHHH------hhC------CCcHHHHHHH
Q 004073 590 PNLLSAG--IISGLQS-LAVPGDPMWTEKSLAVLLNLAAS--------AAGKEEM------NST------PGLVSGLATV 646 (775)
Q Consensus 590 ~~iv~aG--~V~~Lv~-LL~~~~~~i~e~al~~L~nLa~~--------~e~~~~i------~~~------~g~I~~Lv~l 646 (775)
..+.+.| +...|+. ........-++.++.+|.++++- .+|+... .+. -.-...+..+
T Consensus 339 dlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgi 418 (524)
T KOG4413|consen 339 DLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGI 418 (524)
T ss_pred HHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHH
Confidence 8888877 3444444 44333333357788888888762 1233211 110 0223455667
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHH
Q 004073 647 LDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS 687 (775)
Q Consensus 647 L~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~ 687 (775)
++...|++.-.+..++-.|+...=......-.+|.|.....
T Consensus 419 lqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtD 459 (524)
T KOG4413|consen 419 LQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTD 459 (524)
T ss_pred HcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecc
Confidence 77789999999999999998876444555555666655543
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.46 Score=55.17 Aligned_cols=275 Identities=16% Similarity=0.120 Sum_probs=173.1
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHH--hhc--cCchHHHHHHhchhccCCCHHHHHHHHHHHHHh
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVF--TGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNL 500 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~--i~~--~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nL 500 (775)
.+....|...|.+. +...+..|..+|..++.++.+.-.. .-+ .-.||.++++.+. .++.++..|+.++-.+
T Consensus 127 pelLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h----~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 127 PELLPQLCELLDSP-DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH----PSPKIRSHAVGCVNQF 201 (885)
T ss_pred hhHHHHHHHHhcCC-cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC----CChhHHHHHHhhhhhe
Confidence 57788888888887 7788889999999999887654322 111 2467889999988 7899999999888776
Q ss_pred hccCCchhHHHHhhC-cHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHH
Q 004073 501 AVNNNRNKELMLAAG-VIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALH 577 (775)
Q Consensus 501 s~~~~~nk~~i~~~G-~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~ 577 (775)
.. .++...+..-+ .+..|..+-...+. +.+.+.++..|-...-.|..=--.+.|+-++..-++. +..+.-.|+.
T Consensus 202 i~--~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~-dE~VALEACE 278 (885)
T KOG2023|consen 202 II--IQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENVALEACE 278 (885)
T ss_pred ee--cCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCc-chhHHHHHHH
Confidence 44 33455555433 55555555433333 4556666544443322221111147788888888877 8889999999
Q ss_pred HHHHhcCCCCChHHHHH--cCcHHHHHHhcc-CC-Ch-------------------------------------------
Q 004073 578 ALYNLSTIPSNIPNLLS--AGIISGLQSLAV-PG-DP------------------------------------------- 610 (775)
Q Consensus 578 aL~nLs~~~~nk~~iv~--aG~V~~Lv~LL~-~~-~~------------------------------------------- 610 (775)
-...++..+-.+..+.. ...||.|+.=+. +. +.
T Consensus 279 Fwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddD 358 (885)
T KOG2023|consen 279 FWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDD 358 (885)
T ss_pred HHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccc
Confidence 99999988855555544 467787776331 10 00
Q ss_pred -----------HHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHC
Q 004073 611 -----------MWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE 679 (775)
Q Consensus 611 -----------~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~ 679 (775)
.++..++++|.-|+.. -+..++. -..|.|-+.|.+..=.+||.++-+|.+++.+. -+-+...
T Consensus 359 e~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~--~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc---M~g~~p~ 431 (885)
T KOG2023|consen 359 EDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLP--ILLPLLKEHLSSEEWKVREAGVLALGAIAEGC---MQGFVPH 431 (885)
T ss_pred ccccccccccccHhhccHHHHHHHHHh--hHHHHHH--HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH---hhhcccc
Confidence 1233344444444321 1122222 12333333444444568999999999998653 1222222
Q ss_pred --CCHHHHHHhhhcCChHHHHHHHHHHHHhHhccCCC
Q 004073 680 --GVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 680 --G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~~~ 714 (775)
..||.|+.++.+..+-+|.-.++.|..+..+--.+
T Consensus 432 LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~ 468 (885)
T KOG2023|consen 432 LPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD 468 (885)
T ss_pred hHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC
Confidence 26888889999999999999999888877664443
|
|
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.017 Score=59.76 Aligned_cols=50 Identities=24% Similarity=0.431 Sum_probs=42.4
Q ss_pred CCCccccccccccccCceecC-CCCccchHHHHHHHh-cCCCCCCCCCCCCC
Q 004073 279 PPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLS-DGHSTCPKTQQKLP 328 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~-~~~~~CP~t~~~l~ 328 (775)
--.+-.||+|++.-+-|.++. |||.||--||.+-+. ....+||.|+.+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 346789999999999999885 999999999999765 34679999997754
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.77 Score=49.26 Aligned_cols=249 Identities=14% Similarity=0.154 Sum_probs=158.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhhH----HhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARV----FTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 431 Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~----~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
|-..|... +..++.-++..+.-+..+.+.|-. .++.+|..+.++..+.. +|..+-..|...|..++. ...
T Consensus 87 LQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg----eddeVAkAAiesikrial-fpa 160 (524)
T KOG4413|consen 87 LQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG----EDDEVAKAAIESIKRIAL-FPA 160 (524)
T ss_pred HHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC----CcHHHHHHHHHHHHHHHh-cHH
Confidence 33345555 777888889888888887764432 25578999999999887 788888899999988875 455
Q ss_pred hhHHHHhhCcHHHHHHH--hccCCh--HHHHHHHHhcc-cccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 507 NKELMLAAGVIPLLEKM--ISNSNS--HGAATALYLNL-SFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~l--L~s~~~--~~~AaaaL~~L-s~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
.-..+.....+..+-.. -...++ +......+..+ |..++.......+|.+..|..=|+...+.-++.+++...+.
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 55555555544433221 111221 23334443333 33334444444578777777666643377788899999999
Q ss_pred hcCCCCChHHHHHcCcHHHHHHhccC--CChHHHHHHHHHHHHHhCC----cccHHHHhhC-CCcHHHHHHHhcCCCHHH
Q 004073 582 LSTIPSNIPNLLSAGIISGLQSLAVP--GDPMWTEKSLAVLLNLAAS----AAGKEEMNST-PGLVSGLATVLDTGELIE 654 (775)
Q Consensus 582 Ls~~~~nk~~iv~aG~V~~Lv~LL~~--~~~~i~e~al~~L~nLa~~----~e~~~~i~~~-~g~I~~Lv~lL~~~s~~~ 654 (775)
|+..+-.+..+.+.|.|+.+..++.. .++--+-.++.....+-+. .-.-+++++. .-+|....+++...+|..
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 99888889999999999999998753 2332223344443333321 1112222221 123455566777889999
Q ss_pred HHHHHHHHHHhhcCChHhHHHHHHCC--CHHHHH
Q 004073 655 QEQAVSCLFLLCNGNEKCCQMVLQEG--VIPALV 686 (775)
Q Consensus 655 ~e~Av~~L~~Lc~~~~~~~~~v~~~G--~i~~Lv 686 (775)
++.|+.+|..|.++. +..+.++..| ....|+
T Consensus 321 ieaAiDalGilGSnt-eGadlllkTgppaaehll 353 (524)
T KOG4413|consen 321 IEAAIDALGILGSNT-EGADLLLKTGPPAAEHLL 353 (524)
T ss_pred HHHHHHHHHhccCCc-chhHHHhccCChHHHHHH
Confidence 999999999998876 5677777776 344444
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.28 E-value=2.1 Score=51.09 Aligned_cols=227 Identities=19% Similarity=0.153 Sum_probs=141.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhcc-----------CCCHHHHHHHHHHHH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVC-----------ERNSYAQEIGAMALF 498 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~-----------~~d~~~qe~A~~aL~ 498 (775)
.+-..|.+. +..+-..++.-+..+++.++++-....+ .++.||..|+.-.. -.||-+|...+..|.
T Consensus 183 ~~~~lL~ek-~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLr 259 (866)
T KOG1062|consen 183 AFRKLLCEK-HHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLR 259 (866)
T ss_pred HHHHHHhhc-CCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHH
Confidence 334445544 6667777788888888887766555544 66777777754211 257889999998888
Q ss_pred HhhccCCchhHHHHh--------------------hCcHHHHHHHhccCChHHHHHHHHhccc-ccCCcccccccc----
Q 004073 499 NLAVNNNRNKELMLA--------------------AGVIPLLEKMISNSNSHGAATALYLNLS-FLDDAKPIIGSS---- 553 (775)
Q Consensus 499 nLs~~~~~nk~~i~~--------------------~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls-~~~~~k~~I~~~---- 553 (775)
-|-.++.+....|-+ -..+..+..+...+.-++.|+-+|..+- ..+.|-..++-.
T Consensus 260 iLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r 339 (866)
T KOG1062|consen 260 ILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLR 339 (866)
T ss_pred HhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHh
Confidence 886544433333321 0123334444433434566777775433 333443333311
Q ss_pred ------Cch----HHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 004073 554 ------HAV----PFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL 623 (775)
Q Consensus 554 ------g~i----~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nL 623 (775)
.++ ..+++.|++. +..+++.|+..++.| .+..|...|++ .|+++|...+...+..++.-+..+
T Consensus 340 ~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~l-vn~~Nv~~mv~-----eLl~fL~~~d~~~k~~~as~I~~l 412 (866)
T KOG1062|consen 340 VVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYAL-VNESNVRVMVK-----ELLEFLESSDEDFKADIASKIAEL 412 (866)
T ss_pred hhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHH-hccccHHHHHH-----HHHHHHHhccHHHHHHHHHHHHHH
Confidence 122 2567788887 999999999999988 45556665554 478878777777888888888888
Q ss_pred hCC--cccHH------HHhh------CCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 004073 624 AAS--AAGKE------EMNS------TPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 624 a~~--~e~~~------~i~~------~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc 666 (775)
+.. ++.+= .+.. +...+..++.++..+.++..+.++.-|+.-.
T Consensus 413 aEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~ 469 (866)
T KOG1062|consen 413 AEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLAL 469 (866)
T ss_pred HHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 762 33221 1111 3467889999998887777777777666543
|
|
| >KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.0079 Score=63.67 Aligned_cols=54 Identities=26% Similarity=0.525 Sum_probs=46.0
Q ss_pred CCCCCCCccccccccccccCceecC-CCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 275 QMPLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 275 ~~~~~p~~f~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
..+.+|+.=.||||++--.+|-++. +|.+||-.||-++.. .+..||+|+.|..-
T Consensus 293 ~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 293 SELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASV 347 (357)
T ss_pred cccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchH
Confidence 3445678889999999999998885 599999999999998 48899999988643
|
|
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.016 Score=60.71 Aligned_cols=47 Identities=21% Similarity=0.651 Sum_probs=38.9
Q ss_pred ccccccccccc--Cce-ecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 283 LRCPISLQLMY--DPV-IIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 283 f~CPIs~~~m~--dPV-~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
.-|-||++=+. |-+ ++||.|.|-+.||++|+......||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 57999987653 444 579999999999999999778899999987754
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.029 Score=44.36 Aligned_cols=55 Identities=18% Similarity=0.073 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 004073 569 HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL 623 (775)
Q Consensus 569 ~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nL 623 (775)
+.++..|+++|.+++........-....+++.|+.+|.+++..++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999887666655556678999999999988889999999999875
|
... |
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.02 Score=58.27 Aligned_cols=54 Identities=19% Similarity=0.354 Sum_probs=46.9
Q ss_pred CccccccccccccCce----ecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004073 281 EELRCPISLQLMYDPV----IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV----~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn 335 (775)
..|.||+|.+.+++-+ +-+|||+++..|.++.+. +...||+|+.++...++++-
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEee
Confidence 6799999999998864 348999999999999886 46799999999999888874
|
|
| >KOG4367 consensus Predicted Zn-finger protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.0094 Score=64.74 Aligned_cols=34 Identities=26% Similarity=0.647 Sum_probs=30.6
Q ss_pred CCccccccccccccCceecCCCCccchHHHHHHH
Q 004073 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWL 313 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~ 313 (775)
-+++.||||...++||+|++|||+.||.|-..-+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 3689999999999999999999999999977544
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.75 Score=47.62 Aligned_cols=177 Identities=14% Similarity=0.116 Sum_probs=120.5
Q ss_pred HHHHHHHhcccccCCccccccccCchHHHHHhhc----CCCCHHHHHHHHHHHHHhcCCCC--ChHHHHHcCcHHHHHHh
Q 004073 531 GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK----GKTEHQCKLDALHALYNLSTIPS--NIPNLLSAGIISGLQSL 604 (775)
Q Consensus 531 ~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~----~~~~~~~k~~Al~aL~nLs~~~~--nk~~iv~aG~V~~Lv~L 604 (775)
-+|.++|.-++++++.|..+.....---|-..|. +...+-.+-.++++|..|..+++ ....+...++||..++.
T Consensus 97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 5677777778888888887775443223333332 33345678889999999986554 56677789999999999
Q ss_pred ccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCC---cH----HHH-HHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHH
Q 004073 605 AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPG---LV----SGL-ATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMV 676 (775)
Q Consensus 605 L~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g---~I----~~L-v~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v 676 (775)
+..|+..-+..|..++..+-.++.|-.-+..+.. .| ..+ ..+.+.++++.-.+++++...||.+. ..+..+
T Consensus 177 me~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp-rar~aL 255 (293)
T KOG3036|consen 177 MESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP-RARAAL 255 (293)
T ss_pred HhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH-HHHHHH
Confidence 9999888888899999999888888776655321 12 222 22334689999999999999998765 444444
Q ss_pred HHC---CCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 677 LQE---GVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 677 ~~~---G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
... +.-..-...+-..++..|+--+.++.++.
T Consensus 256 ~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 256 RSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC 290 (293)
T ss_pred HhhCcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence 332 22222223334456677777777777765
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.3 Score=50.66 Aligned_cols=275 Identities=18% Similarity=0.167 Sum_probs=169.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhH-HhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARV-FTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~-~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+.+-+.+.++..+ +....+.+++-+-.+.++-..-+. .+ -++.++.+|+......++.++..-+.-|..|-. .
T Consensus 124 n~iFdvL~klsaD-sd~~V~~~aeLLdRLikdIVte~~~tF----sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~ 197 (675)
T KOG0212|consen 124 NEIFDVLCKLSAD-SDQNVRGGAELLDRLIKDIVTESASTF----SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-V 197 (675)
T ss_pred HHHHHHHHHHhcC-CccccccHHHHHHHHHHHhcccccccc----CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-C
Confidence 4455666777665 334444556666555554211111 12 234444444433323678887777776666621 2
Q ss_pred CchhHHHHh--hCcHHHHHHHhccCCh--HHHHHHHHhc-ccccCCccccccc-cCchHHHHHhhcCCCCHHHHHHHHHH
Q 004073 505 NRNKELMLA--AGVIPLLEKMISNSNS--HGAATALYLN-LSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHA 578 (775)
Q Consensus 505 ~~nk~~i~~--~G~i~~Lv~lL~s~~~--~~~AaaaL~~-Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~a 578 (775)
+ ... |+. ...++.|..+|...+. +..+-.+|.+ |.... ++....+ ...++.||.-+.+. ++..+..|+.-
T Consensus 198 P-~~~-m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~-s~P~s~d~~~~i~vlv~~l~ss-~~~iq~~al~W 273 (675)
T KOG0212|consen 198 P-DLE-MISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR-SSPSSMDYDDMINVLVPHLQSS-EPEIQLKALTW 273 (675)
T ss_pred C-cHH-HHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh-cCccccCcccchhhccccccCC-cHHHHHHHHHH
Confidence 2 222 333 4578888888876664 2223333322 22211 2222223 46788999999888 89999999999
Q ss_pred HHHhcCCCCChHHHHHcCcHHHHHHhccCCCh-HHHHHHHH---HHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHH
Q 004073 579 LYNLSTIPSNIPNLLSAGIISGLQSLAVPGDP-MWTEKSLA---VLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIE 654 (775)
Q Consensus 579 L~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~-~i~e~al~---~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~ 654 (775)
|.....-.++....--+|++..++..+.+.+. .+++.+.. .|..+++.+.....+ +-...|..|.+.+.+.....
T Consensus 274 i~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~i-d~~~ii~vl~~~l~~~~~~t 352 (675)
T KOG0212|consen 274 IQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEI-DYGSIIEVLTKYLSDDREET 352 (675)
T ss_pred HHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhcccc-chHHHHHHHHHHhhcchHHH
Confidence 99988777776666678899999998876544 34444432 355566666555543 32356777888888888888
Q ss_pred HHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccC
Q 004073 655 QEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 655 ~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
+-.++.-+..|-+.-+ +.-.+......+.|+.-+.+.++.+-..+..+|..+....+
T Consensus 353 ri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 353 RIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 8877776666655432 23334445688888888888888888888888877765433
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.14 Score=51.78 Aligned_cols=123 Identities=16% Similarity=0.106 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCChHHHHHc----------------CcHHHHHHhccC------CChHHHHHHHHHHHHHhC
Q 004073 568 EHQCKLDALHALYNLSTIPSNIPNLLSA----------------GIISGLQSLAVP------GDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~~nk~~iv~a----------------G~V~~Lv~LL~~------~~~~i~e~al~~L~nLa~ 625 (775)
+......++..|.||+..++.+..++.. .++..|++++.. ....-.+..+.+|.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 3446677888899998887777766542 367778886644 123345789999999999
Q ss_pred CcccHHHHhhCC-Cc--HHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHC--CCHHHHHHhhh
Q 004073 626 SAAGKEEMNSTP-GL--VSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE--GVIPALVSISV 690 (775)
Q Consensus 626 ~~e~~~~i~~~~-g~--I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~--G~i~~Lv~Ll~ 690 (775)
.++||..++... +. +..|+..+.+.+..-|.-+++++-|+|-....+...+-.. +++|.|+.-+.
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 999999998743 33 6677777777788889999999999998765554444433 57777764444
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.72 Score=56.10 Aligned_cols=200 Identities=14% Similarity=0.092 Sum_probs=136.4
Q ss_pred hHHHHhhCcHHHHHHHhccCCh-HHHHHHHHh--cccccCCccccccccCchHHHHHhhcC-C-CCHHHHHHHHHHHHHh
Q 004073 508 KELMLAAGVIPLLEKMISNSNS-HGAATALYL--NLSFLDDAKPIIGSSHAVPFLVELCKG-K-TEHQCKLDALHALYNL 582 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s~~~-~~~AaaaL~--~Ls~~~~~k~~I~~~g~i~~LV~LL~~-~-~~~~~k~~Al~aL~nL 582 (775)
...-..-|++|-.+++|++... -...+..+. -|+.++.++.-+...++-.-.+..|.. . .+++-+..|+-+|..+
T Consensus 505 V~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAvi 584 (1387)
T KOG1517|consen 505 VDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVI 584 (1387)
T ss_pred hhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHH
Confidence 3334567999999999998764 233444443 467777777766665544445555554 2 3567788888889888
Q ss_pred cCCC-CChHHHHHcCcHHHHHHhccCC-ChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHH
Q 004073 583 STIP-SNIPNLLSAGIISGLQSLAVPG-DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS 660 (775)
Q Consensus 583 s~~~-~nk~~iv~aG~V~~Lv~LL~~~-~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~ 660 (775)
+.+- -.+....+.+.|..-++.|.++ .+-++.=++-.|..|-.+-+...-.....++...|..+|....|+++..|+-
T Consensus 585 v~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVF 664 (1387)
T KOG1517|consen 585 VRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVF 664 (1387)
T ss_pred HcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHH
Confidence 8654 4677778889999888888875 4555566677777776665544444444588999999999999999999999
Q ss_pred HHHHhhcCC----hHhHHHH-----------HHCCCHH----HHHHhhhcCChHHHHHHHHHHHHh
Q 004073 661 CLFLLCNGN----EKCCQMV-----------LQEGVIP----ALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 661 ~L~~Lc~~~----~~~~~~v-----------~~~G~i~----~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
+|..+-.+. ++....+ .-+..+. .|+.+...|++-++...+-.|..+
T Consensus 665 ALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 665 ALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred HHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 998887642 2222221 1122233 667788889998887766555444
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.66 E-value=2.1 Score=49.14 Aligned_cols=265 Identities=16% Similarity=0.075 Sum_probs=135.6
Q ss_pred hhHHHHHHH-HHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc
Q 004073 425 FERYQDFLN-VLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 503 (775)
Q Consensus 425 ~~~i~~Ll~-~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 503 (775)
...+.+|+. .|++. -.-++.++++.+..++..+- -.... .-+|..|-.+|++ .....+-.|+..|-.|+..
T Consensus 262 ~~q~rpfL~~wls~k-~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s----~rv~~rFsA~Riln~lam~ 333 (898)
T COG5240 262 LLQLRPFLNSWLSDK-FEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKS----TRVVLRFSAMRILNQLAMK 333 (898)
T ss_pred HHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhc----chHHHHHHHHHHHHHHHhh
Confidence 345666666 45443 56789999999999886641 01111 1345556666666 7888999999999988853
Q ss_pred CCc-------hhHHHH-hhC---cHHHHHHHhccCChH--HHHHHHHhcccc--cCCccccccc-------------cCc
Q 004073 504 NNR-------NKELML-AAG---VIPLLEKMISNSNSH--GAATALYLNLSF--LDDAKPIIGS-------------SHA 555 (775)
Q Consensus 504 ~~~-------nk~~i~-~~G---~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~--~~~~k~~I~~-------------~g~ 555 (775)
.++ +...++ +.+ ..-.+..+|+.|... ..-+..+-++.. .|..|..+.+ .-.
T Consensus 334 ~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~ 413 (898)
T COG5240 334 YPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY 413 (898)
T ss_pred CCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHH
Confidence 332 122222 111 344566667766542 122222222221 1233333221 001
Q ss_pred hHHHHHhh-cCCCCHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHH
Q 004073 556 VPFLVELC-KGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM 633 (775)
Q Consensus 556 i~~LV~LL-~~~~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i 633 (775)
+..|...| +.| ..+.++.+..||.....+. +.|.++ +..|..++.+..-. +-++.+|..|-.. |-.+-
T Consensus 414 l~FL~~~L~~eG-g~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDcey~--~I~vrIL~iLG~E--gP~a~ 483 (898)
T COG5240 414 LDFLGSSLLQEG-GLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDCEYH--QITVRILGILGRE--GPRAK 483 (898)
T ss_pred HHHHHHHHHhcc-cchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhcchh--HHHHHHHHHhccc--CCCCC
Confidence 22333333 233 5566666666666655433 444443 33455555544332 3444444444321 10000
Q ss_pred hhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 634 NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 634 ~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
- -...|..+..-+--.+.-++..|+.+|...+-+-. ..+....+...|-..+.+.++++|+.|.-+|+.++..+
T Consensus 484 ~-P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d 557 (898)
T COG5240 484 T-PGKYVRHIYNRLILENNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSD 557 (898)
T ss_pred C-cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence 0 00122333333323455678888888855443210 01112223344557788899999999999999998543
|
|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.022 Score=62.79 Aligned_cols=45 Identities=24% Similarity=0.575 Sum_probs=37.6
Q ss_pred CccccccccccccCce----ecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDPV----IIASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV----~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
+--+||||+|-|-+-| ++.|.|+|--.|+.+|+.. +||+||--..
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 4459999999998887 4689999999999999754 9999985443
|
|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.03 Score=60.03 Aligned_cols=47 Identities=23% Similarity=0.673 Sum_probs=39.7
Q ss_pred CCccccccccccccCc-------------eecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDP-------------VIIASGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 280 p~~f~CPIs~~~m~dP-------------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
-.+-.|-||++-|-.| =-++|||.+--+|+..|... ..|||.|+.|+
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 3577899999875433 68999999999999999986 77999999985
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.59 Score=55.54 Aligned_cols=245 Identities=14% Similarity=0.086 Sum_probs=152.4
Q ss_pred HHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHH-HhhccCCchhHHHHhhCcHHHHHHHhccCC
Q 004073 450 QIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALF-NLAVNNNRNKELMLAAGVIPLLEKMISNSN 528 (775)
Q Consensus 450 ~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~-nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~ 528 (775)
....++.....-|...+..|+...|+++... ..+.....+..+|. .++. +.++. ..+++++...+++..
T Consensus 485 ~~E~~aA~~K~~~~~~Ik~~~~~aLlrl~~~----q~e~akl~~~~aL~~~i~f--~~~~~----~~v~~~~~s~~~~d~ 554 (748)
T KOG4151|consen 485 KNEYLAAKEKYERAKKIKPGGYEALLRLGQQ----QFEEAKLKWYHALAGKIDF--PGERS----YEVVKPLDSALHNDE 554 (748)
T ss_pred HHHHHhhhhHHhcCccccccHHHHHHHHHHH----hchHHHHHHHHHHhhhcCC--CCCch----hhhhhhhcchhhhhH
Confidence 3444554445566678889999999999887 45566666666665 3322 22221 245666666665443
Q ss_pred h-HH--HHHHHHhcccccCC-ccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHH-H-cCcHHHHH
Q 004073 529 S-HG--AATALYLNLSFLDD-AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLL-S-AGIISGLQ 602 (775)
Q Consensus 529 ~-~~--~AaaaL~~Ls~~~~-~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv-~-aG~V~~Lv 602 (775)
. .+ .++-++.||+..++ .|..|...-+++.+-.++... ++-.+..++..+.||..++.--.+.+ + ...++...
T Consensus 555 ~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~ 633 (748)
T KOG4151|consen 555 KGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWN 633 (748)
T ss_pred HHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHH
Confidence 2 22 37778888887654 455566555555555556666 89999999999999987776433333 3 33555555
Q ss_pred HhccCCChHHHHHHHHHHHHHhCCcccHHH-HhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCC
Q 004073 603 SLAVPGDPMWTEKSLAVLLNLAASAAGKEE-MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGV 681 (775)
Q Consensus 603 ~LL~~~~~~i~e~al~~L~nLa~~~e~~~~-i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~ 681 (775)
..+........-.+++++..+....++... +...-..-..++.++.++++.+|...+.+.+++.....+....+.....
T Consensus 634 ~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~ 713 (748)
T KOG4151|consen 634 LNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEV 713 (748)
T ss_pred HHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchH
Confidence 555444444444555566645444333332 3333345677888888999999999999888877666566666766677
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHH
Q 004073 682 IPALVSISVNGSTRGRDKAQRLLM 705 (775)
Q Consensus 682 i~~Lv~Ll~~g~~~~k~kA~~LL~ 705 (775)
++.+..+........++.|..-|.
T Consensus 714 ~~~l~~~~~~~~a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 714 MELLSGLQKLNRAPKREDAAPCLS 737 (748)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHH
Confidence 777765555444444444444443
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=94.27 E-value=2.4 Score=51.82 Aligned_cols=242 Identities=16% Similarity=0.078 Sum_probs=134.9
Q ss_pred HhhccCchHHHHHHhchhccC-CCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhc----cCC----h--HHH
Q 004073 464 FTGANGFVVALLRFLESAVCE-RNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMIS----NSN----S--HGA 532 (775)
Q Consensus 464 ~i~~~G~I~~Lv~lL~s~~~~-~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~----s~~----~--~~~ 532 (775)
.+.+.|++..|+.+|.+-.+. .+.......+..|... ..-..||..+++.|+++.|+..|. .+. . .+.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c-~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYC-CKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHH-HhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence 456789999999999864321 2223333344444444 457889999999999999999985 222 1 233
Q ss_pred HHHHHhccccc---CCcc---cccccc-------CchHHHHHhhcCC---CCHHHHHHHHHHHHHhcCCCCChHHHHHcC
Q 004073 533 ATALYLNLSFL---DDAK---PIIGSS-------HAVPFLVELCKGK---TEHQCKLDALHALYNLSTIPSNIPNLLSAG 596 (775)
Q Consensus 533 AaaaL~~Ls~~---~~~k---~~I~~~-------g~i~~LV~LL~~~---~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG 596 (775)
-..++..|... +... ...... .-+..|++.+.+. .++.+....+.+|-+|+.....+..++-.-
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence 33333322211 1111 111111 2366777777654 368899999999999987776554433211
Q ss_pred cHHHHHHh--ccC---CCh-HHHHHHHHHHHHHhCCcc---cHHHHhhCCCcHHHHHHHhcC--------CCHHHHH---
Q 004073 597 IISGLQSL--AVP---GDP-MWTEKSLAVLLNLAASAA---GKEEMNSTPGLVSGLATVLDT--------GELIEQE--- 656 (775)
Q Consensus 597 ~V~~Lv~L--L~~---~~~-~i~e~al~~L~nLa~~~e---~~~~i~~~~g~I~~Lv~lL~~--------~s~~~~e--- 656 (775)
.-+.| ++ +.. .+. -..+..+.+..++-.+.. -|..|+.. |.+...+++|.. .+++.++
T Consensus 271 F~p~l-~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~-GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 271 FKPYL-DFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILES-GIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred HHHhc-ChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh-hHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 11111 21 111 111 222333333444433332 34566764 999988888862 4566655
Q ss_pred -----HHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhh-cCChHHHHHHHHHHHHhHh
Q 004073 657 -----QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV-NGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 657 -----~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~-~g~~~~k~kA~~LL~~L~~ 709 (775)
.++.+|..||.+. ...+.++..++++.|-.|=. .++..+-.-|-.+|..|++
T Consensus 349 ~psLp~iL~lL~GLa~gh-~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGH-EPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CCcHHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 4788999999877 34555566767755543322 1234444455555555544
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.43 Score=51.00 Aligned_cols=224 Identities=13% Similarity=0.061 Sum_probs=145.4
Q ss_pred CCHHHHHHHHHHHHHhhccCCchhHHH-HhhCcHHHHHHHhccCC--h--HHHHHHHHhcccccCCccccccc-cCchHH
Q 004073 485 RNSYAQEIGAMALFNLAVNNNRNKELM-LAAGVIPLLEKMISNSN--S--HGAATALYLNLSFLDDAKPIIGS-SHAVPF 558 (775)
Q Consensus 485 ~d~~~qe~A~~aL~nLs~~~~~nk~~i-~~~G~i~~Lv~lL~s~~--~--~~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~ 558 (775)
-++.++.-|+.+|.++.. ..+.|..+ ++...-..++.+|++.- . +-+..-++..|+...+...-|.. ...|.-
T Consensus 161 i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~d 239 (432)
T COG5231 161 IDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIND 239 (432)
T ss_pred HHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 455677888999999976 44444443 44556677888887633 2 23455556666666655544443 467888
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhcCC--CCChHHHHHcCcHHHHHHhccCC---ChHHHHHH---HHHHHH----Hh--
Q 004073 559 LVELCKGKTEHQCKLDALHALYNLSTI--PSNIPNLLSAGIISGLQSLAVPG---DPMWTEKS---LAVLLN----LA-- 624 (775)
Q Consensus 559 LV~LL~~~~~~~~k~~Al~aL~nLs~~--~~nk~~iv~aG~V~~Lv~LL~~~---~~~i~e~a---l~~L~n----La-- 624 (775)
|+.+++......+.+.++.++.|++.- .+....+.-.|-+.+-+++|..+ +..++... -.+|.+ ||
T Consensus 240 li~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 240 LIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 888888765677888999999999862 24555666677666667755432 22222211 111111 11
Q ss_pred -------------CCcc---------cHHHHh-hCCCcHHHHHHHhcCCCHH-HHHHHHHHHHHhhcCChHhHHHHHHCC
Q 004073 625 -------------ASAA---------GKEEMN-STPGLVSGLATVLDTGELI-EQEQAVSCLFLLCNGNEKCCQMVLQEG 680 (775)
Q Consensus 625 -------------~~~e---------~~~~i~-~~~g~I~~Lv~lL~~~s~~-~~e~Av~~L~~Lc~~~~~~~~~v~~~G 680 (775)
-++. +...+. +....+..|.++++...+. .-.-|+.=+.++.+..|+....+...|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 1111 111221 2234567788888866554 445566667777777788888999999
Q ss_pred CHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 681 VIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 681 ~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
+=..++.|+.+.++++|-.|.+.++.+-.
T Consensus 400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 400 VKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999887653
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.26 Score=44.49 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhC-CcccHHHHhhCCCcHHHHHHHhc--CCCHHHHHHHHHHHHHhhcCChHhHHHHHHC
Q 004073 612 WTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLD--TGELIEQEQAVSCLFLLCNGNEKCCQMVLQE 679 (775)
Q Consensus 612 i~e~al~~L~nLa~-~~e~~~~i~~~~g~I~~Lv~lL~--~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~ 679 (775)
++...+.+|+|||- ++..+..+... |+|+.++..-. ..+|-.+|.|+.++.+||.+++++...+.+-
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~-~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVREL-GGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 35678899999987 45667777775 77999988754 5789999999999999999998887777654
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.37 Score=46.59 Aligned_cols=105 Identities=21% Similarity=0.271 Sum_probs=67.5
Q ss_pred cccccchHHHHHhhHHHHHHHHHhhccCccccCCC----ChhhHHHHHHHHHHHHHHHHHHhhccCCCceeehhhchHHH
Q 004073 12 AASDAKLHGDMCKKLSALYCKILSVFPSLEASRPR----SKSGIQALCSLHIALEKAKNILHHCSECSKLYLAITGDSVL 87 (775)
Q Consensus 12 ~~~~~~~~~~~c~~l~~~~rri~ll~p~lEe~r~~----~~s~~~~l~~L~~~l~kak~Ll~~c~~~Sklyl~~~~~~i~ 87 (775)
+.+.....+..+.++..++.+| .|.++|+... +..-..-++.|...|++|+.|++.|++.++ |=++.-....
T Consensus 25 ~~~k~~~fk~~l~~L~sTl~~i---~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r-~n~~kk~~y~ 100 (147)
T PF05659_consen 25 ASKKSLSFKSILKRLESTLESI---IPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVRR-WNLYKKPRYA 100 (147)
T ss_pred HHHHHHhhhhHHHHHHHHHHHh---hhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccccH-HHHHhhHhHH
Confidence 3444445566666665555555 9999999632 222267789999999999999999998864 4445666677
Q ss_pred HHHHHHHHHHHHHHHHhhh-cCChhHHHHHHHHHHHHh
Q 004073 88 LKFEKARSALAESLRRVED-IVPQSIGCQILEIVNELE 124 (775)
Q Consensus 88 ~~f~~~~~~l~~~L~~~~~-~~p~~~~~~i~~~~~~l~ 124 (775)
.+.++ |+.+|...-+ .+|......+.++...+.
T Consensus 101 ~Ki~~----le~~l~~f~~v~~q~~~~~D~~~l~~~~~ 134 (147)
T PF05659_consen 101 RKIEE----LEESLRRFIQVDLQLHQLRDIKELLAKMS 134 (147)
T ss_pred HHHHH----HHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 77777 5555554433 245554444555544444
|
Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif []. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.51 Score=55.82 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
-.+.++...+.+. +..+|..|+-.+..+-..+. ....+.|+++.|-.++.+ .++.+..+|+.+|..+...+
T Consensus 121 y~~~Pl~~~l~d~-~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D----~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 121 YLCDPLLKCLKDD-DPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSD----SNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHHhccCC-ChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcC----CCchHHHHHHHHHHHHHHhC
Confidence 3455777778777 88999999888888776544 345668999999999986 79999999999999986543
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.33 Score=56.34 Aligned_cols=170 Identities=14% Similarity=0.124 Sum_probs=116.1
Q ss_pred cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHh--------hCcHHHHHHHhccCChH--HHHHHHH
Q 004073 468 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA--------AGVIPLLEKMISNSNSH--GAATALY 537 (775)
Q Consensus 468 ~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~--------~G~i~~Lv~lL~s~~~~--~~AaaaL 537 (775)
...+|.|..+|.+ .|...++.|..||..++.+.. .+.+ .-.+|.++.+.++.+.+ ..|++.+
T Consensus 127 pelLp~L~~~L~s----~d~n~~EgA~~AL~KIcEDsa----~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cv 198 (885)
T KOG2023|consen 127 PELLPQLCELLDS----PDYNTCEGAFGALQKICEDSA----QFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCV 198 (885)
T ss_pred hhHHHHHHHHhcC----CcccccchhHHHHHHHHhhhH----HHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhh
Confidence 5678899999988 788899999999999964221 1111 12689999999988764 4455544
Q ss_pred hcccccCCccccccc-cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHH
Q 004073 538 LNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKS 616 (775)
Q Consensus 538 ~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~a 616 (775)
-..... ..+..+.. ...+..|..+-.+. +++++++.+.+|..|......|..=--.|+|+.++....+.+..+.-+|
T Consensus 199 Nq~i~~-~~qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEA 276 (885)
T KOG2023|consen 199 NQFIII-QTQALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEA 276 (885)
T ss_pred hheeec-CcHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHH
Confidence 322211 12222222 35677788887777 9999999999999997554443322235788888888888888888999
Q ss_pred HHHHHHHhCCcccHHHHhhC-CCcHHHHHHHh
Q 004073 617 LAVLLNLAASAAGKEEMNST-PGLVSGLATVL 647 (775)
Q Consensus 617 l~~L~nLa~~~e~~~~i~~~-~g~I~~Lv~lL 647 (775)
+.....+|..+.-+..+..+ ...||.|+.-|
T Consensus 277 CEFwla~aeqpi~~~~L~p~l~kliPvLl~~M 308 (885)
T KOG2023|consen 277 CEFWLALAEQPICKEVLQPYLDKLIPVLLSGM 308 (885)
T ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence 99999999988666554332 24566665533
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.2 Score=50.03 Aligned_cols=79 Identities=24% Similarity=0.281 Sum_probs=66.1
Q ss_pred hHHHHHcCcHHHHHHhccC---------CChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHH
Q 004073 589 IPNLLSAGIISGLQSLAVP---------GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 659 (775)
Q Consensus 589 k~~iv~aG~V~~Lv~LL~~---------~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av 659 (775)
...+++.||+..|+.+|.. .+......++..|..|..+..|...++.++++|..|+..|.+.+..++..|+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 4467788999999997742 2346678899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 004073 660 SCLFLLCN 667 (775)
Q Consensus 660 ~~L~~Lc~ 667 (775)
.+|..+|.
T Consensus 180 eiL~~lc~ 187 (187)
T PF06371_consen 180 EILAALCL 187 (187)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 99999983
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.46 Score=55.72 Aligned_cols=150 Identities=10% Similarity=0.045 Sum_probs=102.3
Q ss_pred CchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCCh---HHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccH
Q 004073 554 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNI---PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGK 630 (775)
Q Consensus 554 g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk---~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~ 630 (775)
..+..+++.|++. ++.++..|+..+..|+.--.++ ..+...|+| |.+.|....+.+.-..+.+|..++..-..-
T Consensus 799 qi~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 799 QICSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcccc
Confidence 3456677888888 9999999999999987544444 233445654 777888888888777777777776532211
Q ss_pred HHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHH
Q 004073 631 EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML 706 (775)
Q Consensus 631 ~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~ 706 (775)
...--..+.+|.|..+|++...+++++++..+..||..+++....--=--+---|++++..-...+|+.|...+-.
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~ 951 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGY 951 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 1111123789999999999999999999999999998776532111000122346677777777777777654433
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.38 E-value=4 Score=48.62 Aligned_cols=256 Identities=14% Similarity=0.124 Sum_probs=156.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc-
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR- 506 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~- 506 (775)
..+|+......+..-+..+|+.++..|...+.. .+. -++..|--||++ ..+.++-.|+++|..+|..++.
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~--pavs~Lq~flss----p~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELA--PAVSVLQLFLSS----PKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcc--hHHHHHHHHhcC----cHHHHHHHHHHHHHHHHHhCCcc
Confidence 445555433333778899999999988765432 122 167777778877 7888999999999998854432
Q ss_pred ----hh--HHHH-hhC---cHHHHHHHhccCChH--HH----HHHHHhcccccCCccccccc-------------cCchH
Q 004073 507 ----NK--ELML-AAG---VIPLLEKMISNSNSH--GA----ATALYLNLSFLDDAKPIIGS-------------SHAVP 557 (775)
Q Consensus 507 ----nk--~~i~-~~G---~i~~Lv~lL~s~~~~--~~----AaaaL~~Ls~~~~~k~~I~~-------------~g~i~ 557 (775)
|+ ..++ +.+ +-+.+..+|+.|.+. .. ....+.+++ ++.|..+.+ .+.+.
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~dis--DeFKivvvdai~sLc~~fp~k~~~~m~ 394 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDIS--DEFKIVVVDAIRSLCLKFPRKHTVMMN 394 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--ccceEEeHHHHHHHHhhccHHHHHHHH
Confidence 11 1112 222 567778888887741 22 222222332 455553321 24556
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcC-CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhC
Q 004073 558 FLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST 636 (775)
Q Consensus 558 ~LV~LL~~~~~~~~k~~Al~aL~nLs~-~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~ 636 (775)
.|-++|+.....+.+++...++..+.. +++.|.. ++..|.+.+.+.... .-+..+|..|-. +|-.+..-
T Consensus 395 FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~~--~i~~rILhlLG~--EgP~a~~P- 464 (865)
T KOG1078|consen 395 FLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEFT--QIAVRILHLLGK--EGPKAPNP- 464 (865)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccch--HHHHHHHHHHhc--cCCCCCCc-
Confidence 677777654367788888888877764 5555544 456677777654443 667777776643 11111111
Q ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 637 PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 637 ~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
+..|..+...+--.+..++..|+.+|..+..+++.- ..-+.-.|...+.+.++.+|+.|...|+.+.+
T Consensus 465 skyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 465 SKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred chhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 133444444444467788999999999887444211 11223334477888999999999999999983
|
|
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.035 Score=54.60 Aligned_cols=44 Identities=16% Similarity=0.363 Sum_probs=38.7
Q ss_pred cccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004073 283 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
|.|-||.+-++.||+..|||.||-.|--+-++. ...|-+|+...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence 999999999999999999999999997777665 56899998654
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.21 E-value=2.2 Score=50.63 Aligned_cols=217 Identities=12% Similarity=0.077 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHHHHHHhccChhhhHH-hhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC-------------
Q 004073 439 ENLGQKCNIVEQIRLLLKDDEEARVF-TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN------------- 504 (775)
Q Consensus 439 ~~~~~q~~Al~~L~~Lak~~~~nr~~-i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~------------- 504 (775)
++.++|.+|+..|..+..-..+.-.. |.+ .....-+.-.++ .+..+..+|+..-.+++-..
T Consensus 229 ~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~-alfaitl~amks----~~deValQaiEFWsticeEEiD~~~e~~e~~d~ 303 (859)
T KOG1241|consen 229 PDEEIQVAAFQCLVKIMSLYYEFMEPYMEQ-ALFAITLAAMKS----DNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQ 303 (859)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 38899999999999888755443222 322 222333333344 67777777776666554110
Q ss_pred ---CchhHHHHh--hCcHHHHHHHhccCC------hH--HHHHHH-HhcccccCCccccccccCchHHHHHhhcCCCCHH
Q 004073 505 ---NRNKELMLA--AGVIPLLEKMISNSN------SH--GAATAL-YLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQ 570 (775)
Q Consensus 505 ---~~nk~~i~~--~G~i~~Lv~lL~s~~------~~--~~Aaaa-L~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~ 570 (775)
+.++..... .+++|.|+++|...+ ++ ..|+++ |..++..- +..|. .-++|.+=.-++++ +.+
T Consensus 304 ~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~--~D~Iv-~~Vl~Fiee~i~~p-dwr 379 (859)
T KOG1241|consen 304 GLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV--GDDIV-PHVLPFIEENIQNP-DWR 379 (859)
T ss_pred CCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh--cccch-hhhHHHHHHhcCCc-chh
Confidence 011222211 368899999996522 11 333333 43333321 12232 24555555577788 999
Q ss_pred HHHHHHHHHHHhcCCCC-ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhC---CCcHHHHHHH
Q 004073 571 CKLDALHALYNLSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST---PGLVSGLATV 646 (775)
Q Consensus 571 ~k~~Al~aL~nLs~~~~-nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~---~g~I~~Lv~l 646 (775)
-++.|+.|+..+-..++ .+..-+-.+++|.++.++.++..-+++.+.++|..++..-. ..+... ...+..++.=
T Consensus 380 ~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~~n~~~l~~~l~~l~~g 457 (859)
T KOG1241|consen 380 NREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAIINQELLQSKLSALLEG 457 (859)
T ss_pred hhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhcccHhhhhHHHHHHHHH
Confidence 99999999998876654 56666668899999999998888888999999999987432 222221 1233333333
Q ss_pred hcCCCHHHHHHHHHHHHHhhc
Q 004073 647 LDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 647 L~~~s~~~~e~Av~~L~~Lc~ 667 (775)
| ...|++-.++++++.+|+.
T Consensus 458 L-~DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 458 L-NDEPRVASNVCWAFISLAE 477 (859)
T ss_pred h-hhCchHHHHHHHHHHHHHH
Confidence 3 3689999999999999983
|
|
| >KOG3113 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.063 Score=54.97 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=41.4
Q ss_pred CCccccccccccccCce----ecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 004073 280 PEELRCPISLQLMYDPV----IIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLT 333 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV----~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~ 333 (775)
-..|.|||++-.|.+-. +-+|||+|.-.++.+- +..+||+|++.+..++.+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei---kas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI---KASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh---hhccccccCCcccccCeE
Confidence 36799999999999864 4589999988887665 356999999999877533
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.061 Score=58.79 Aligned_cols=43 Identities=19% Similarity=0.500 Sum_probs=38.0
Q ss_pred ccccccccccccC---ceecCCCCccchHHHHHHHhcCC--CCCCCCC
Q 004073 282 ELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGH--STCPKTQ 324 (775)
Q Consensus 282 ~f~CPIs~~~m~d---PV~~~~G~ty~r~~I~~w~~~~~--~~CP~t~ 324 (775)
-|.|||..+-=.| |+.+.|||+.+|.+|.+-...|. .-||.|-
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 3899999887776 99999999999999999998887 6799983
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.96 Score=51.60 Aligned_cols=151 Identities=21% Similarity=0.170 Sum_probs=114.4
Q ss_pred chHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCCh----HHHHHHHHHHHHHhCCcc-c
Q 004073 555 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDP----MWTEKSLAVLLNLAASAA-G 629 (775)
Q Consensus 555 ~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~----~i~e~al~~L~nLa~~~e-~ 629 (775)
....+.+++.++ +...+..|++.|..|+.+..-...+++..++..|..++.+++. .+...++.++..|-.+.- .
T Consensus 84 ~a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 84 YAKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 456778889999 8888888999999999999999999999999999999987643 344455555555544322 1
Q ss_pred HHHHhhCCCcHHHHHHHhc--CCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004073 630 KEEMNSTPGLVSGLATVLD--TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 630 ~~~i~~~~g~I~~Lv~lL~--~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
+..+.. .+|...+.++. .....+-..|+.+|-++..++....+.+.++--+..|+..+..++.+++.+|..+|..+
T Consensus 163 W~~~~~--~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 163 WESVSN--DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eeeccc--HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 222221 34555555553 23556778899999999888877888888888999999999999999999999998765
Q ss_pred H
Q 004073 708 R 708 (775)
Q Consensus 708 ~ 708 (775)
-
T Consensus 241 ~ 241 (713)
T KOG2999|consen 241 F 241 (713)
T ss_pred H
Confidence 4
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.14 Score=40.35 Aligned_cols=54 Identities=19% Similarity=0.057 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004073 611 MWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 665 (775)
Q Consensus 611 ~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~L 665 (775)
.++..|+.+|.+++........-.. ...++.|+.+|.+.++.++..|+.+|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678899999998875544443333 36899999999999999999999999765
|
... |
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.91 E-value=2.2 Score=44.37 Aligned_cols=140 Identities=17% Similarity=0.110 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCC-----ChHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHH
Q 004073 572 KLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPG-----DPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLAT 645 (775)
Q Consensus 572 k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~-----~~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~ 645 (775)
.-+|+..|.-++++++.|..++++.+--.|..+|... ..-++-.++++++.|...++ +...+.-..+.||..++
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 4467778888899999999999999888888887532 34566789999999988654 33444444599999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcCChH---hHHHHHHCC----CHHHHH-HhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 646 VLDTGELIEQEQAVSCLFLLCNGNEK---CCQMVLQEG----VIPALV-SISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 646 lL~~~s~~~~e~Av~~L~~Lc~~~~~---~~~~v~~~G----~i~~Lv-~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
.+..||...|.-|.-||..+-..+.. .++..-+-- ++..++ .+...++.+.-+.+..+.-.|.+..
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999887765522 123222222 334444 6667788888888877776665543
|
|
| >PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.094 Score=40.96 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=24.7
Q ss_pred ccccccccccccCceec-CCCC--ccchHHHHH-HHhcCCCCCCCCCCC
Q 004073 282 ELRCPISLQLMYDPVII-ASGQ--TYERICIEK-WLSDGHSTCPKTQQK 326 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~-~~G~--ty~r~~I~~-w~~~~~~~CP~t~~~ 326 (775)
.++||||...|.-||-. .|-| .||-...-. ....+...||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 47899999999999965 6765 488754444 444566789999874
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.055 Score=59.01 Aligned_cols=60 Identities=27% Similarity=0.559 Sum_probs=48.0
Q ss_pred cccccccccccCce-----ecCCCCccchHHHHHHHhc-CCCCCCCCCCCCCCCCCcccHHHHHHH
Q 004073 283 LRCPISLQLMYDPV-----IIASGQTYERICIEKWLSD-GHSTCPKTQQKLPHLCLTPNYCVKGLI 342 (775)
Q Consensus 283 f~CPIs~~~m~dPV-----~~~~G~ty~r~~I~~w~~~-~~~~CP~t~~~l~~~~l~pn~~l~~~i 342 (775)
..||||++-..-|+ ++.|||-|--.||++|+.. -...||.|.-+-.-..+.|-+.+|...
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 57999999888774 6789999999999999952 235699998777667888887776554
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.96 Score=52.65 Aligned_cols=221 Identities=14% Similarity=0.038 Sum_probs=130.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh------hhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHH
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE------EARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFN 499 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~------~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~n 499 (775)
..+...+..++.. ..++|..|+..+..+.+..+ .+...+.+ .+...+-+.+.. ....++..|+.+|..
T Consensus 234 ~~Y~~A~~~lsD~-~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D-~aF~~vC~~v~D----~sl~VRV~AaK~lG~ 307 (823)
T KOG2259|consen 234 ACYSRAVKHLSDD-YEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD-AAFSSVCRAVRD----RSLSVRVEAAKALGE 307 (823)
T ss_pred HHHHHHHHHhcch-HHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH-HHHHHHHHHHhc----CceeeeehHHHHhch
Confidence 3455666677666 77888888888877765431 11111211 223333344433 445566667777666
Q ss_pred hhccCCchhHHHHhhCcHHHHHHHhccCCh-HHHHHHHHhcc--cc------------cCCccccccccCchHHHHHhhc
Q 004073 500 LAVNNNRNKELMLAAGVIPLLEKMISNSNS-HGAATALYLNL--SF------------LDDAKPIIGSSHAVPFLVELCK 564 (775)
Q Consensus 500 Ls~~~~~nk~~i~~~G~i~~Lv~lL~s~~~-~~~AaaaL~~L--s~------------~~~~k~~I~~~g~i~~LV~LL~ 564 (775)
+-.-++ .++..-.=..++.-|+...+ .+.....+.+. |. .++.-..|..+|+..++|.=|.
T Consensus 308 ~~~vSe----e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlE 383 (823)
T KOG2259|consen 308 FEQVSE----EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLE 383 (823)
T ss_pred HHHhHH----HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeech
Confidence 531111 11111111111111111111 12222223222 11 2334456777899999999998
Q ss_pred CCCCHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHH
Q 004073 565 GKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGL 643 (775)
Q Consensus 565 ~~~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~L 643 (775)
+. =-+++++|...++.|+.+. .-... ++..|++++++....++.+|+.+|..++.+-.-+ +.-++.+
T Consensus 384 DE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~------eeql~~i 451 (823)
T KOG2259|consen 384 DE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIR------EEQLRQI 451 (823)
T ss_pred HH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHheec------HHHHHHH
Confidence 87 7899999999999998644 33333 6778999999988889999999999998762222 3456778
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhcCC
Q 004073 644 ATVLDTGELIEQEQAVSCLFLLCNGN 669 (775)
Q Consensus 644 v~lL~~~s~~~~e~Av~~L~~Lc~~~ 669 (775)
.+.|...++++++..--+|. .|+.+
T Consensus 452 l~~L~D~s~dvRe~l~elL~-~~~~~ 476 (823)
T KOG2259|consen 452 LESLEDRSVDVREALRELLK-NARVS 476 (823)
T ss_pred HHHHHhcCHHHHHHHHHHHH-hcCCC
Confidence 88888889999887555443 34433
|
|
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=92.54 E-value=2.6 Score=47.06 Aligned_cols=245 Identities=19% Similarity=0.151 Sum_probs=134.8
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
...+..++..|..+.+...|+.++-.|..-+.+ ++.|..+.+.|.+..+++.+.... .+...-..++.+++-++ .+
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~--~d~~~~l~~a~i~~~l~-~d 95 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAP--DDDILALATAAILYVLS-RD 95 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhcccc--chHHHHHHHHHHHHHHc-cC
Confidence 355777888887555778999999999888875 788889999999999999996531 23333333344444453 23
Q ss_pred CchhHHHHhhCcHHHHHHHhcc--CCh-HHHHHHH-HhcccccCCccccccccCchHHHHHhhcC--------CCCHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISN--SNS-HGAATAL-YLNLSFLDDAKPIIGSSHAVPFLVELCKG--------KTEHQCK 572 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s--~~~-~~~Aaaa-L~~Ls~~~~~k~~I~~~g~i~~LV~LL~~--------~~~~~~k 572 (775)
..+-..+.+.+.+..++.+|.. ... ....-.. =.+++. +. ...+....+++.. .....-+
T Consensus 96 ~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk-------~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~ 167 (361)
T PF07814_consen 96 GLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK-------VQ-QKSRSLCKELLSSGSSWKSPKPPELSPQ 167 (361)
T ss_pred CcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhH-------HH-HHHHHHHHHHHhccccccccCCcccccc
Confidence 4444444466777777888871 100 0000000 000000 00 0011111111100 0012223
Q ss_pred HHHHHHHHHhc---------------CCCCChHHHHHcCcHHHHHHhccC----C------------ChHHHHHHHHHHH
Q 004073 573 LDALHALYNLS---------------TIPSNIPNLLSAGIISGLQSLAVP----G------------DPMWTEKSLAVLL 621 (775)
Q Consensus 573 ~~Al~aL~nLs---------------~~~~nk~~iv~aG~V~~Lv~LL~~----~------------~~~i~e~al~~L~ 621 (775)
..|+.+|-.++ ..+--|..+...|++..+++++.+ . +....+.++.+|.
T Consensus 168 ~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILE 247 (361)
T PF07814_consen 168 TLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILE 247 (361)
T ss_pred cHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHH
Confidence 34444444442 112236777788999999997641 0 1345577999999
Q ss_pred HHhCC-cccHHHHhhCC-CcHHHHHH-HhcC---CCHHHHHHHHHHHHHhhcCChHhHHHHHHCCC
Q 004073 622 NLAAS-AAGKEEMNSTP-GLVSGLAT-VLDT---GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGV 681 (775)
Q Consensus 622 nLa~~-~e~~~~i~~~~-g~I~~Lv~-lL~~---~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~ 681 (775)
|.+-. .+++....... +.++.+.. ++.. ..+.....++++|.||+.+++..+..+...++
T Consensus 248 s~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l 313 (361)
T PF07814_consen 248 SVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKL 313 (361)
T ss_pred HHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHh
Confidence 98653 44455444332 22233332 2222 23344678999999999988766666655543
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.15 Score=51.76 Aligned_cols=57 Identities=25% Similarity=0.324 Sum_probs=45.4
Q ss_pred ccccccccccccCceec-CCCCccchHHHHHHHh-cCCCCCCC--CCCCCCCCCCcccHHH
Q 004073 282 ELRCPISLQLMYDPVII-ASGQTYERICIEKWLS-DGHSTCPK--TQQKLPHLCLTPNYCV 338 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~-~~~~~CP~--t~~~l~~~~l~pn~~l 338 (775)
+.+|||+++...-|++. .|.|.|||..|++.++ .....||. |.|.+....++-.+-|
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 46999999999999876 7999999999999998 45677997 7677666655544433
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.95 E-value=4.7 Score=47.97 Aligned_cols=236 Identities=9% Similarity=0.102 Sum_probs=138.1
Q ss_pred hhhHHHHHHH-HHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc
Q 004073 424 VFERYQDFLN-VLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 424 ~~~~i~~Ll~-~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 502 (775)
+...+.+|++ .+.++ +|..+..|+.+......+.+..+..=...+++|.++.++.. ...-+...+.|+|..++.
T Consensus 361 Iv~~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D----~sl~VkdTaAwtlgrI~d 435 (859)
T KOG1241|consen 361 IVPHVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD----PSLWVKDTAAWTLGRIAD 435 (859)
T ss_pred chhhhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC----chhhhcchHHHHHHHHHh
Confidence 3467888888 78887 99999999999999998877777666667999999999985 566777889999999875
Q ss_pred cCCchhHH-HHhhCcHHHHHHHhccCCh-HHHHHHHHhccccc--CCccc----cccc---cCchHHHHHhhc--CCCCH
Q 004073 503 NNNRNKEL-MLAAGVIPLLEKMISNSNS-HGAATALYLNLSFL--DDAKP----IIGS---SHAVPFLVELCK--GKTEH 569 (775)
Q Consensus 503 ~~~~nk~~-i~~~G~i~~Lv~lL~s~~~-~~~AaaaL~~Ls~~--~~~k~----~I~~---~g~i~~LV~LL~--~~~~~ 569 (775)
+..+...- ..-.+.++.++.-|..... ..+++|++.+|+.. +.... .... ...|..|++.-+ ++...
T Consensus 436 ~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqs 515 (859)
T KOG1241|consen 436 FLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQS 515 (859)
T ss_pred hchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchh
Confidence 43322111 1123455555555554443 47899999999842 21111 1221 112333333332 22235
Q ss_pred HHHHHHHHHHHHhcCCCC-ChHHHHHcCcHHHHHH---------hccCCC----hHHHHHHHHHHHHHhC-CcccHHHHh
Q 004073 570 QCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQS---------LAVPGD----PMWTEKSLAVLLNLAA-SAAGKEEMN 634 (775)
Q Consensus 570 ~~k~~Al~aL~nLs~~~~-nk~~iv~aG~V~~Lv~---------LL~~~~----~~i~e~al~~L~nLa~-~~e~~~~i~ 634 (775)
..+..|-.||..|..+.. ....++ .+....... .+...+ ..++..-+.+|..+-. ....+..+.
T Consensus 516 NLR~AAYeALmElIk~st~~vy~~v-~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~ 594 (859)
T KOG1241|consen 516 NLRSAAYEALMELIKNSTDDVYPMV-QKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVS 594 (859)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHH-HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHH
Confidence 688888899998875443 333332 222222222 121111 1223333444444322 122333343
Q ss_pred hCCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhc
Q 004073 635 STPGLVSGLATVLDT-GELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 635 ~~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~ 667 (775)
+ .....++.++.+ .|..+.|.|..+...+..
T Consensus 595 d--~iM~lflri~~s~~s~~v~e~a~laV~tl~~ 626 (859)
T KOG1241|consen 595 D--QIMGLFLRIFESKRSAVVHEEAFLAVSTLAE 626 (859)
T ss_pred H--HHHHHHHHHHcCCccccchHHHHHHHHHHHH
Confidence 3 345566677766 566677777766666654
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.69 E-value=3.4 Score=49.82 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=37.0
Q ss_pred chHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 004073 555 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 624 (775)
Q Consensus 555 ~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa 624 (775)
+++++.+++.++ ++.+++.|+-|+.+| +.-++....++|.+..+..++.+.++.++..|+.+|..+.
T Consensus 128 ~~~~ik~~l~d~-~ayVRk~Aalav~kl--y~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 128 IIDPIKKLLTDP-HAYVRKTAALAVAKL--YRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHHHHHccCC-cHHHHHHHHHHHHHH--HhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 455555555555 555666666555555 2333444455555555555555555555555555555554
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.65 E-value=3.8 Score=50.94 Aligned_cols=211 Identities=16% Similarity=0.192 Sum_probs=119.1
Q ss_pred CCHHHHHHHHHHHHHhhccCCchhHHHHh--hCcHHHHHHHhccCCh--HHHHHHHH---hcccccCCccccccccCchH
Q 004073 485 RNSYAQEIGAMALFNLAVNNNRNKELMLA--AGVIPLLEKMISNSNS--HGAATALY---LNLSFLDDAKPIIGSSHAVP 557 (775)
Q Consensus 485 ~d~~~qe~A~~aL~nLs~~~~~nk~~i~~--~G~i~~Lv~lL~s~~~--~~~AaaaL---~~Ls~~~~~k~~I~~~g~i~ 557 (775)
.+..+|..+..+|..++.. +.......+ ......|..-+++... +..++.+| +.+.. .+....| ...|+
T Consensus 666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-AEHCDLI--PKLIP 741 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-HHHHHHH--HHHHH
Confidence 4678899998888888643 222222211 1123333333333222 22233333 32222 1222222 24555
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcC------cHHHHHHhccCC----ChHHHHHHHHHHHHHhCCc
Q 004073 558 FLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAG------IISGLQSLAVPG----DPMWTEKSLAVLLNLAASA 627 (775)
Q Consensus 558 ~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG------~V~~Lv~LL~~~----~~~i~e~al~~L~nLa~~~ 627 (775)
.++-.+++. +...++.|...|+.++. .....+.| +|...+.++..+ ...++-..+-++..+....
T Consensus 742 EvIL~~Ke~-n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~ 816 (1176)
T KOG1248|consen 742 EVILSLKEV-NVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF 816 (1176)
T ss_pred HHHHhcccc-cHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 555555666 89999999999999972 11112222 444444444332 2222222133333332211
Q ss_pred ccHHHHhhC---CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHH
Q 004073 628 AGKEEMNST---PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704 (775)
Q Consensus 628 e~~~~i~~~---~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL 704 (775)
..++.. .+.+..+...|..+++.+...|++.+-.++..-++.+-.-..+-+++.+..++...+...|.+...||
T Consensus 817 ---~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 817 ---KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLL 893 (1176)
T ss_pred ---hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 112221 24556666677789999999999999999987665555555555888888999888899998888888
Q ss_pred HHh
Q 004073 705 MLF 707 (775)
Q Consensus 705 ~~L 707 (775)
..|
T Consensus 894 ekL 896 (1176)
T KOG1248|consen 894 EKL 896 (1176)
T ss_pred HHH
Confidence 655
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.49 E-value=13 Score=43.99 Aligned_cols=242 Identities=12% Similarity=0.117 Sum_probs=137.1
Q ss_pred HHHhcCCC-HHHHHHHHHHHHHHhccChhhhHHhhc-cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHH
Q 004073 433 NVLNEGEN-LGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL 510 (775)
Q Consensus 433 ~~L~s~~~-~~~q~~Al~~L~~Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~ 510 (775)
..|.++.+ .-++.+|+-.|-.|.+.+++ ++. .+-+..++.+|.. .+..+...+...+--|+..+++.-
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~r~spD----l~~~~~W~~riv~LL~D----~~~gv~ta~~sLi~~lvk~~p~~y-- 222 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLFRKSPD----LVNPGEWAQRIVHLLDD----QHMGVVTAATSLIEALVKKNPESY-- 222 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHhcCcc----ccChhhHHHHHHHHhCc----cccceeeehHHHHHHHHHcCCHHH--
Confidence 34555522 34555666666666666653 334 4677889999987 455555555555555554333221
Q ss_pred HHhhCcHHHHHHHhc-----cCCh--------------HHHHHHHHhcccccCCccccccccCchHHHHHhhcCC---CC
Q 004073 511 MLAAGVIPLLEKMIS-----NSNS--------------HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK---TE 568 (775)
Q Consensus 511 i~~~G~i~~Lv~lL~-----s~~~--------------~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~---~~ 568 (775)
.+++++-+.-|. .+.+ ..+.+.+|.++-..++.-....-..++..++...+.. .+
T Consensus 223 ---k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~ 299 (938)
T KOG1077|consen 223 ---KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKK 299 (938)
T ss_pred ---hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccc
Confidence 122333232221 1111 1446666665533333221111123334444433321 01
Q ss_pred H---HHHHHHHHHHHHhcCCCC-ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHH
Q 004073 569 H---QCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLA 644 (775)
Q Consensus 569 ~---~~k~~Al~aL~nLs~~~~-nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv 644 (775)
. -++.+.+--..+|+.+-+ ....+++ ++..|-.+|.+.+..++-.++..+..||++.....++-.+ ...++
T Consensus 300 vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h---~d~Ii 374 (938)
T KOG1077|consen 300 VQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH---QDTII 374 (938)
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH---HHHHH
Confidence 1 123333333345555444 3333333 5778888999888899999999999999997777777665 67888
Q ss_pred HHhc-CCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHH
Q 004073 645 TVLD-TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDK 699 (775)
Q Consensus 645 ~lL~-~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~k 699 (775)
..|+ ..+-.++..|+..|+.+|..+ +...+ |.-|++-+.+.+..+|+.
T Consensus 375 ~sLkterDvSirrravDLLY~mcD~~--Nak~I-----V~elLqYL~tAd~siree 423 (938)
T KOG1077|consen 375 NSLKTERDVSIRRRAVDLLYAMCDVS--NAKQI-----VAELLQYLETADYSIREE 423 (938)
T ss_pred HHhccccchHHHHHHHHHHHHHhchh--hHHHH-----HHHHHHHHhhcchHHHHH
Confidence 8888 467789999999999999865 33333 334555555555555543
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=91.20 E-value=7.2 Score=43.01 Aligned_cols=198 Identities=14% Similarity=0.056 Sum_probs=137.6
Q ss_pred HhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH-----HHHh--hCcHHHHHHHhccCChHHHHHHH
Q 004073 464 FTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE-----LMLA--AGVIPLLEKMISNSNSHGAATAL 536 (775)
Q Consensus 464 ~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~-----~i~~--~G~i~~Lv~lL~s~~~~~~Aaaa 536 (775)
.+...|.+..|+..|.. -+-+.+..++....++-.....++. .+.. ..++..|+.--...+.--.+-.+
T Consensus 71 Ei~~~dll~~Li~~L~~----L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~m 146 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPK----LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDM 146 (335)
T ss_dssp HHHHHTHHHHHHHTGGG----S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhh----CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHH
Confidence 34556889999998887 6888888888888777543333332 2222 23555555554544434556666
Q ss_pred HhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC-CCChHHHHHc---CcHHHHHHhccCCChHH
Q 004073 537 YLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSA---GIISGLQSLAVPGDPMW 612 (775)
Q Consensus 537 L~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~-~~nk~~iv~a---G~V~~Lv~LL~~~~~~i 612 (775)
|.....++.....|.....+-.+.+.+..+ +-++..+|..++..|-.. ..-....+.. ..+.....||.+++-.+
T Consensus 147 lRec~k~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 147 LRECIKHESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp HHHHTTSHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred HHHHHhhHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 666777666555666677888899999988 999999999999997654 3334444443 35566777999999999
Q ss_pred HHHHHHHHHHHhCCcccHHH---HhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 004073 613 TEKSLAVLLNLAASAAGKEE---MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 613 ~e~al~~L~nLa~~~e~~~~---i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc 666 (775)
+..++..|..|-..+.+... .+.++.-+..++.+|++.+..+|-.|..++=-..
T Consensus 226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 99999999999988887664 4555567888999999999999999998875443
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.14 Score=55.40 Aligned_cols=53 Identities=30% Similarity=0.448 Sum_probs=48.5
Q ss_pred ccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004073 282 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn 335 (775)
.-.|.+++..|.|||-...|-.||-..|-.|+.. +.+-|.|++++...+|++-
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIkL 92 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIKL 92 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccceee
Confidence 4589999999999999999999999999999986 7788999999999888874
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.93 Score=40.61 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=55.8
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHH--CCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 638 GLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ--EGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 638 g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~--~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
..++.++..+.+.+.++|..|+.+|++++... +..++. ..++..|..++.+.++.+|..|.-|-++|.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 57888999999999999999999999999753 223332 458889999999999999999987777764
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.76 E-value=3.6 Score=47.68 Aligned_cols=148 Identities=14% Similarity=0.049 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcc---ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKD---DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~---~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+...+..|.+. ++.++.+|+.....|++- .-+ -..+...|. .|-...+..++++.-..+.|+..+....
T Consensus 606 vStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e-~~~l~klg~------iLyE~lge~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 606 VSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGE-TKELAKLGN------ILYENLGEDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred HHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcch-HHHHHHHhH------HHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence 44556677777 889999999888887752 100 012333332 3333333477887766666666653222
Q ss_pred CchhHHHHhhCcHHHHHHHhccCChH--HHHHHHHhcccccCCccccccc-cCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
.-.+.+---.|.+|.|..+|++...+ .+..+.+..++..........+ -..--.|+++|++- +.+.+.+|..++..
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~-nKeiRR~A~~tfG~ 756 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW-NKEIRRNATETFGC 756 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh-hHHHHHhhhhhhhh
Confidence 11111112368999999999987753 5566666666554332222222 23445788999887 99999999999988
Q ss_pred hcC
Q 004073 582 LST 584 (775)
Q Consensus 582 Ls~ 584 (775)
++.
T Consensus 757 Is~ 759 (975)
T COG5181 757 ISR 759 (975)
T ss_pred HHh
Confidence 763
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.68 E-value=2.4 Score=50.40 Aligned_cols=241 Identities=17% Similarity=0.127 Sum_probs=137.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
.-+.+++...... +.+.++-.---|.+.++..++-. .+++..+++ +..++++.++.-|++.+.-+-. +
T Consensus 49 slF~dvvk~~~T~-dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~k----D~~d~np~iR~lAlrtm~~l~v--~ 116 (734)
T KOG1061|consen 49 SLFPDVVKCMQTR-DLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLK----DCEDPNPLIRALALRTMGCLRV--D 116 (734)
T ss_pred hhhHHHHhhcccC-CchHHHHHHHHHHHhhccCchHH-----Hhhhhhhhc----cCCCCCHHHHHHHhhceeeEee--h
Confidence 4566677767666 77777777777777777765421 233333333 3344788888887777666532 1
Q ss_pred chhHHHHhhCcHHHHHHHhccCChHHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 585 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~ 585 (775)
+ +-...+.+|...++.++.-....+++..-...+.+.......|.++.|-+++.+. ++.+..+|+.+|..+...
T Consensus 117 -~----i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 117 -K----ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDS-NPMVVANALAALSEIHES 190 (734)
T ss_pred -H----HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCC-CchHHHHHHHHHHHHHHh
Confidence 1 1234678899999988875554444444445566677777789999999999987 999999999999999854
Q ss_pred CCC-hHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC---CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHH
Q 004073 586 PSN-IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA---SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSC 661 (775)
Q Consensus 586 ~~n-k~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~---~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~ 661 (775)
+.+ -.-.+..-.+..++..+...+.-- -+.+|.+|+. .+. +++ ...+..+...|.+..+.+.-.++.+
T Consensus 191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~---qi~IL~~l~~y~p~d~-~ea----~~i~~r~~p~Lqh~n~avvlsavKv 262 (734)
T KOG1061|consen 191 HPSVNLLELNPQLINKLLEALNECTEWG---QIFILDCLAEYVPKDS-REA----EDICERLTPRLQHANSAVVLSAVKV 262 (734)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhhhhh---HHHHHHHHHhcCCCCc-hhH----HHHHHHhhhhhccCCcceEeehHHH
Confidence 443 111111123333444343322221 2233333433 221 111 1234444555556666666666666
Q ss_pred HHHhhcCChHhHHHHHHCCCHHHHHHhhhcCC
Q 004073 662 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGS 693 (775)
Q Consensus 662 L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~ 693 (775)
++.+...-.. .....-..+-++|+.++....
T Consensus 263 ~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 263 ILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred HHHHHHHHHH-HHHHHHHHhcccceeeecccc
Confidence 6665543322 222222334455555554443
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=90.51 E-value=5 Score=42.31 Aligned_cols=194 Identities=13% Similarity=0.088 Sum_probs=124.1
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhc-cCchHHHHHHhchhccC---C--CH---HHHHHHHHHHHHhhccCCchhHH
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCE---R--NS---YAQEIGAMALFNLAVNNNRNKEL 510 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~---~--d~---~~qe~A~~aL~nLs~~~~~nk~~ 510 (775)
+.+.|..|+.+|..--...++.--.+-. .|.+..|++=+-+-... . .. .-..+|+..|--+|. +++-|..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 5677888887776554444444434444 68888887644332111 1 11 222455555666665 7889999
Q ss_pred HHhhCcHHHHHHHhccCCh-------HHHHHHHHhcccccCCc--cccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 511 MLAAGVIPLLEKMISNSNS-------HGAATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 511 i~~~G~i~~Lv~lL~s~~~-------~~~AaaaL~~Ls~~~~~--k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
++++...--|..+|+..+. +-.+.+++..|...++. -..+...+.+|..++.+..| +.-.|..|.-++..
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqK 165 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQK 165 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHH
Confidence 9999877777777765542 23477777777664432 22334579999999999999 99999999999988
Q ss_pred hcCCCC-------ChHHHHH-cCcHHHHHH-hccCCChHHHHHHHHHHHHHhCCcccHHHHhh
Q 004073 582 LSTIPS-------NIPNLLS-AGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS 635 (775)
Q Consensus 582 Ls~~~~-------nk~~iv~-aG~V~~Lv~-LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~ 635 (775)
+-.++. +..++-. +.++..+|. +..+.++.+.+..+..-..|+.++.++.++..
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 865543 2333333 335555565 45677899999999999999999999988764
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.48 Score=54.50 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=102.8
Q ss_pred chHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCC---hHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHH
Q 004073 555 AVPFLVELCKGKTEHQCKLDALHALYNLSTIPSN---IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE 631 (775)
Q Consensus 555 ~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~n---k~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~ 631 (775)
.+..++.+|++. .+.++..|+.....|+.--.+ -..+...|.| |.+-|....+.+.-..+.++..+.+.-.-+.
T Consensus 605 ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 466677889998 899999999988888643222 2334445554 6677777778777777777776655332221
Q ss_pred HHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 632 EMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 632 ~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
----..|.+|.|..+|++...+++++.+..+..+|..++++...--=--+---|+.++.+.+.+.|++|...+-.++
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 10012488999999999999999999999999999887654211100112234677778888888988876654443
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.10 E-value=9.1 Score=41.31 Aligned_cols=221 Identities=14% Similarity=0.127 Sum_probs=137.7
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHH-hhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHh-hCcH
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVF-TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA-AGVI 517 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~-i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~-~G~i 517 (775)
+.-.+.-|+..+.+++-. .+.|.. .++...-..++.+|++.. .+..+|.+.+.++.-|+. +......+-+ ...+
T Consensus 162 ~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~v--g~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dli 237 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYV--GVKQLQYNSLIIIWILTF-SKECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 334666777788777765 445554 455656677888887644 567899999999988875 3333322222 3466
Q ss_pred HHHHHHhccCCh---HHHHHHHHhcccccCCccccccc---cCchHHHHHhhcCC--CCHHHHHHHHHH-----------
Q 004073 518 PLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGS---SHAVPFLVELCKGK--TEHQCKLDALHA----------- 578 (775)
Q Consensus 518 ~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~---~g~i~~LV~LL~~~--~~~~~k~~Al~a----------- 578 (775)
.-|+.+.+.... -.-+++++.|+.. ...|..|.. .|-+.+-|++|..+ .+.+.+.+.-..
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 677777765432 1347788877665 233444443 45456666666543 233322211110
Q ss_pred ------HHHh-------cC-------CCCChHHHHHc--CcHHHHHHhccCCChH-HHHHHHHHHHHHhC-CcccHHHHh
Q 004073 579 ------LYNL-------ST-------IPSNIPNLLSA--GIISGLQSLAVPGDPM-WTEKSLAVLLNLAA-SAAGKEEMN 634 (775)
Q Consensus 579 ------L~nL-------s~-------~~~nk~~iv~a--G~V~~Lv~LL~~~~~~-i~e~al~~L~nLa~-~~e~~~~i~ 634 (775)
+..| |. .+.|..++.+. .++..|.++++..++. +...|+.=|..+.. .|+++.-+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 1111 11 12367777764 4788889988765544 33445555555544 688888777
Q ss_pred hCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 004073 635 STPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 635 ~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc 666 (775)
.. |+=..++++|.+.+++++=.|+.++..+-
T Consensus 397 Ky-g~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 397 KY-GVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred Hh-hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 75 99999999999999999999999987654
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=89.97 E-value=1.6 Score=44.15 Aligned_cols=105 Identities=14% Similarity=0.035 Sum_probs=78.0
Q ss_pred ccCCChHHHHHHHHHHHHHhCCcccHHHHhhC---------------CCcHHHHHHHhcC------CCHHHHHHHHHHHH
Q 004073 605 AVPGDPMWTEKSLAVLLNLAASAAGKEEMNST---------------PGLVSGLATVLDT------GELIEQEQAVSCLF 663 (775)
Q Consensus 605 L~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~---------------~g~I~~Lv~lL~~------~s~~~~e~Av~~L~ 663 (775)
+.+.+....+.++.+|+||+...++...++.. ...+..|++.+.. .....-.+.+.+|.
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 33445556789999999999999998866542 1356677777665 23456788999999
Q ss_pred HhhcCChHhHHHHHHC--CC--HHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 664 LLCNGNEKCCQMVLQE--GV--IPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 664 ~Lc~~~~~~~~~v~~~--G~--i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
|+++.. +.++.+++. +. +..|+.+....+..-|+.++.+|+++.=.
T Consensus 84 NlS~~~-~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd 133 (192)
T PF04063_consen 84 NLSQLP-EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD 133 (192)
T ss_pred HhcCCH-HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Confidence 998875 677777775 34 77888888888666677888999998733
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.34 E-value=3.8 Score=47.93 Aligned_cols=213 Identities=11% Similarity=0.083 Sum_probs=120.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC-----Cc
Q 004073 432 LNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN-----NR 506 (775)
Q Consensus 432 l~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~-----~~ 506 (775)
+..+.++.+..++..|++.|-.|.....-.+ -.....+..++. .+..++..|+.++.-.+.-. .+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~------~~Y~~A~~~lsD----~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSK------ACYSRAVKHLSD----DYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccH------HHHHHHHHHhcc----hHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 3334333388899999999887765321111 223566778877 67888888877665543111 11
Q ss_pred -hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHH-HH-HhhcCCCCHHHHHHHHHHHHH
Q 004073 507 -NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPF-LV-ELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 507 -nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~-LV-~LL~~~~~~~~k~~Al~aL~n 581 (775)
+...+ ...++..+-+.++..+- +..|+.+|..+-...+ ..|.- |= +++.+..........-+.|+.
T Consensus 273 ~~e~kl-~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe--------e~i~QTLdKKlms~lRRkr~ahkrpk~l~s 343 (823)
T KOG2259|consen 273 SEEEKL-KDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE--------EIIQQTLDKKLMSRLRRKRTAHKRPKALYS 343 (823)
T ss_pred hhhhhh-HHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH--------HHHHHHHHHHHhhhhhhhhhcccchHHHHh
Confidence 11111 23355555666655442 3444444433222110 00000 00 011100001111112222222
Q ss_pred hc---C------------CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHH
Q 004073 582 LS---T------------IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATV 646 (775)
Q Consensus 582 Ls---~------------~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~l 646 (775)
=- + .++.-..++..|+-..+|.=|.+.-..+++.|+..+..|+.+..+-. ..++.-||++
T Consensus 344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDM 418 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDM 418 (823)
T ss_pred cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHH
Confidence 11 0 12234457788888888988877777888999999999988655433 2467889999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcC
Q 004073 647 LDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 647 L~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
+.+.-..++..|+.+|..|+.+
T Consensus 419 fNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 419 FNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred hccHHHHHHHHHHHHHHHHHHH
Confidence 9888889999999999888764
|
|
| >smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.4 Score=37.26 Aligned_cols=40 Identities=25% Similarity=0.648 Sum_probs=31.2
Q ss_pred cccccc--cccCceecCCC-----CccchHHHHHHHhc-CCCCCCCCC
Q 004073 285 CPISLQ--LMYDPVIIASG-----QTYERICIEKWLSD-GHSTCPKTQ 324 (775)
Q Consensus 285 CPIs~~--~m~dPV~~~~G-----~ty~r~~I~~w~~~-~~~~CP~t~ 324 (775)
|-||++ --.+|.+.||. +-+=+.|+.+|+.. ++.+||.|+
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 677775 45678888874 66889999999974 467899985
|
Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=89.08 E-value=15 Score=41.84 Aligned_cols=192 Identities=20% Similarity=0.114 Sum_probs=111.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHh-chhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFL-ESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL-~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+.+..++....+..+...+..++..+..++..-...- .+ ..++..+...+ ............+..+|..-.|...+
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 4455666665555467888888888888875411000 00 12233333333 11111112222233334433333211
Q ss_pred CchhHHHHhhCcHHHHHHHhccCChHHHHHHHHhccccc-CCc-------------cccccccCchHHHHHhhcCCCCHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFL-DDA-------------KPIIGSSHAVPFLVELCKGKTEHQ 570 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~-~~~-------------k~~I~~~g~i~~LV~LL~~~~~~~ 570 (775)
+.. ....+..|+.+|.+......|+..+..|..+ ++. |..+. ...+|.|++-.+.. +..
T Consensus 266 ~~~-----~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~-~~~ 338 (415)
T PF12460_consen 266 HPL-----ATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEA-DDE 338 (415)
T ss_pred Cch-----HHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhc-Chh
Confidence 111 1235777888888755445566666554443 221 11121 35688888888876 666
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHH-cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc
Q 004073 571 CKLDALHALYNLSTIPSNIPNLLS-AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA 627 (775)
Q Consensus 571 ~k~~Al~aL~nLs~~~~nk~~iv~-aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~ 627 (775)
.+.+-+.||.++..+-.....+-+ ...+|.|++-|..++..++..++.+|..+....
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 899999999999876553333333 458888889888888888899999999988755
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.97 E-value=41 Score=40.69 Aligned_cols=248 Identities=11% Similarity=0.088 Sum_probs=132.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHh
Q 004073 434 VLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA 513 (775)
Q Consensus 434 ~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~ 513 (775)
.|+.. ++-++.+|+.....+-...++.-. -+++....+|.+ .+..+...++..+..++..++++-..+.+
T Consensus 150 Ll~~~-~~~irKKA~Lca~r~irK~P~l~e-----~f~~~~~~lL~e----k~hGVL~~~l~l~~e~c~~~~~~l~~fr~ 219 (866)
T KOG1062|consen 150 LLQHR-DPYIRKKAALCAVRFIRKVPDLVE-----HFVIAFRKLLCE----KHHGVLIAGLHLITELCKISPDALSYFRD 219 (866)
T ss_pred HHhCC-CHHHHHHHHHHHHHHHHcCchHHH-----HhhHHHHHHHhh----cCCceeeeHHHHHHHHHhcCHHHHHHHHH
Confidence 44555 788888888777666655554322 345666677766 56677777777777776544433333322
Q ss_pred hCcHHHHHHHhccCChHHHHHHHHhcccccCCcccccccc--C-chHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC---
Q 004073 514 AGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSS--H-AVPFLVELCKGKTEHQCKLDALHALYNLSTIPS--- 587 (775)
Q Consensus 514 ~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~~--g-~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~--- 587 (775)
.++.|+..|+.-.. ..++...++ .-|-+. . -|-.|+++|..+ +++..+.-...|..++.+.+
T Consensus 220 --l~~~lV~iLk~l~~--------~~yspeydv-~gi~dPFLQi~iLrlLriLGq~-d~daSd~M~DiLaqvatntdssk 287 (866)
T KOG1062|consen 220 --LVPSLVKILKQLTN--------SGYSPEYDV-HGISDPFLQIRILRLLRILGQN-DADASDLMNDILAQVATNTDSSK 287 (866)
T ss_pred --HHHHHHHHHHHHhc--------CCCCCccCc-cCCCchHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhcccccc
Confidence 66666666643110 001100000 001000 0 012344555555 66666666666666665433
Q ss_pred ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhh----------CCCc----HHHHHHHhcCCCHH
Q 004073 588 NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS----------TPGL----VSGLATVLDTGELI 653 (775)
Q Consensus 588 nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~----------~~g~----I~~Lv~lL~~~s~~ 653 (775)
|...++=-..|..++.+.. +..++..|+.+|...-.++++-...+. .+.+ =..+++.|++.++.
T Consensus 288 N~GnAILYE~V~TI~~I~~--~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~S 365 (866)
T KOG1062|consen 288 NAGNAILYECVRTIMDIRS--NSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVS 365 (866)
T ss_pred cchhHHHHHHHHHHHhccC--CchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHH
Confidence 3333333233333333332 233345555555555444432221111 0011 24577788888888
Q ss_pred HHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHH-HHHHHhHhccC
Q 004073 654 EQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQ-RLLMLFREQRQ 712 (775)
Q Consensus 654 ~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~-~LL~~L~~~~~ 712 (775)
+|..|+..++.|...+ +.+.+ +..|+.++...++..|...+ ++...-.++.+
T Consensus 366 IkrralELs~~lvn~~--Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 366 IKRRALELSYALVNES--NVRVM-----VKELLEFLESSDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred HHHHHHHHHHHHhccc--cHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 9999999888888764 44444 55688888888888885555 44444444444
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.74 E-value=47 Score=39.63 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=42.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhh-cCChHHHHHHHHHHHHhHhccC
Q 004073 639 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV-NGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 639 ~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~-~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
++..|-.+|.+....+|--|+..+..||+.. .....+... ...++..+. ..+..+|++|..||..+++..+
T Consensus 330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~--~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~N 401 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETNIRYLALESMCKLASSE--FSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN 401 (938)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHhcc--chHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhh
Confidence 4555555555555555555555555555542 222222222 455555555 6788999999999999987654
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.73 E-value=1.1 Score=46.53 Aligned_cols=89 Identities=20% Similarity=0.252 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHhhCC------CcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCChHhH-HHHHHCCCH
Q 004073 611 MWTEKSLAVLLNLAASAAGKEEMNSTP------GLVSGLATVLD-TGELIEQEQAVSCLFLLCNGNEKCC-QMVLQEGVI 682 (775)
Q Consensus 611 ~i~e~al~~L~nLa~~~e~~~~i~~~~------g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~~~~-~~v~~~G~i 682 (775)
.-+..|+.+|..|+-.+.+..-+..++ ..+..|+++|. +.++..+|-|+.+|.+||..+...+ ....+.+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 446899999999999888888776642 24555666665 4688999999999999999886665 555777899
Q ss_pred HHHHHhhhcCChHHHHH
Q 004073 683 PALVSISVNGSTRGRDK 699 (775)
Q Consensus 683 ~~Lv~Ll~~g~~~~k~k 699 (775)
..|+.+++.+...++..
T Consensus 219 ~~Li~FiE~a~~~~~~~ 235 (257)
T PF12031_consen 219 SHLIAFIEDAEQNAHQV 235 (257)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998766555443
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=88.71 E-value=1.6 Score=39.11 Aligned_cols=91 Identities=13% Similarity=0.018 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhC-CCcHHHHHHHhcCC
Q 004073 572 KLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST-PGLVSGLATVLDTG 650 (775)
Q Consensus 572 k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~-~g~I~~Lv~lL~~~ 650 (775)
++.++.+|...+..-.....-.-.-++++++..+.+.+..++..|+.+|.|++.... ..+..+ ......|.+++...
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCC
Confidence 556777777776543333222234589999999999999999999999999986543 333322 25667778888888
Q ss_pred CHHHHHHHHHHHHHh
Q 004073 651 ELIEQEQAVSCLFLL 665 (775)
Q Consensus 651 s~~~~e~Av~~L~~L 665 (775)
++.+|..| ..|-.|
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 88877665 444443
|
|
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.69 E-value=0.27 Score=53.90 Aligned_cols=49 Identities=18% Similarity=0.448 Sum_probs=40.7
Q ss_pred CCccccccccccccCce-----e---cCCCCccchHHHHHHHhcC------CCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDPV-----I---IASGQTYERICIEKWLSDG------HSTCPKTQQKLP 328 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV-----~---~~~G~ty~r~~I~~w~~~~------~~~CP~t~~~l~ 328 (775)
-.+..|-||++.-.+++ . ..|.|+||-.||.+|-... ...||.|+.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 47899999999999998 3 4699999999999997532 367999987643
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.44 E-value=7 Score=46.40 Aligned_cols=254 Identities=14% Similarity=0.084 Sum_probs=132.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChh--hhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEE--ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~--nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
..+..|.+. +..++.+|+..+..+++--.. --..|+..|.| |...|.. +++++.-..+.||..+.....-.
T Consensus 803 tiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylge----eypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 803 TILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGE----EYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCc----ccHHHHHHHHHHHHHHHHhcccc
Confidence 345566666 889999999998888753100 01124444532 4455544 77877655555554442111111
Q ss_pred hHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccc-cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004073 508 KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
|..==-.|.+|.|..+|++.+. ++++...+..++..........+ -..--.|+++|+.- +.+.+.+|..++..++.
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah-kK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH-KKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHH
Confidence 1111135799999999998876 46777777777654332222221 13445788888887 88999999999988863
Q ss_pred CCCChHHHHHcCcHHHHHHhccCCChH---HHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHH
Q 004073 585 IPSNIPNLLSAGIISGLQSLAVPGDPM---WTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSC 661 (775)
Q Consensus 585 ~~~nk~~iv~aG~V~~Lv~LL~~~~~~---i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~ 661 (775)
--+- ..++..|+.-|...+.. .+..|+++.+.-|.- -.++|.|+.=-+.....+|.-.+.+
T Consensus 955 aIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p----------FtVLPalmneYrtPe~nVQnGVLka 1018 (1172)
T KOG0213|consen 955 AIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP----------FTVLPALMNEYRTPEANVQNGVLKA 1018 (1172)
T ss_pred hcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc----------hhhhHHHHhhccCchhHHHHhHHHH
Confidence 1111 22333344333222111 111223332222221 1234444444445566667665555
Q ss_pred HHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 662 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 662 L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
|..+...-.+.....+ .-+.|.|-.-+.+.+.--|.-|..+++++.
T Consensus 1019 lsf~FeyigemskdYi-yav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1019 LSFMFEYIGEMSKDYI-YAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred HHHHHHHHHHHhhhHH-HHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 5554432111111110 113444445556666666677777776665
|
|
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.86 E-value=0.14 Score=53.02 Aligned_cols=53 Identities=21% Similarity=0.458 Sum_probs=41.8
Q ss_pred CccccccccccccCce----------ecCCCCccchHHHHHHHhcC-CCCCCCCCCCCCCCCCc
Q 004073 281 EELRCPISLQLMYDPV----------IIASGQTYERICIEKWLSDG-HSTCPKTQQKLPHLCLT 333 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV----------~~~~G~ty~r~~I~~w~~~~-~~~CP~t~~~l~~~~l~ 333 (775)
++=.|-||++-+-+-| .++|+|+|---||.-|.--| ..|||.|+++.+-+.+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 4568999988777666 68999999999999997654 57999998876544433
|
|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
Probab=87.56 E-value=0.55 Score=36.21 Aligned_cols=43 Identities=21% Similarity=0.464 Sum_probs=22.0
Q ss_pred cccccccc--cCceec--CCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004073 285 CPISLQLM--YDPVII--ASGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 285 CPIs~~~m--~dPV~~--~~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
||+|.+.| +|--.. +||.-+||-|..+-...++..||-|++++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888888 332334 57999999997777766788999999876
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=87.55 E-value=1.4 Score=37.25 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhcc-CCChHHHHHHHHHHHHHhCCcccHHHHhh
Q 004073 572 KLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNS 635 (775)
Q Consensus 572 k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~-~~~~~i~e~al~~L~nLa~~~e~~~~i~~ 635 (775)
.+.|++|+.|+++.+.....+-+.++|+.++++.. ++...++--|..+|..++...+|.+.+.+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~ 68 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE 68 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 67899999999998888877778899999999875 46678889999999999999999887654
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=87.54 E-value=2.8 Score=44.15 Aligned_cols=175 Identities=15% Similarity=0.149 Sum_probs=116.9
Q ss_pred HHHHHHHhcccccCCccccccccCchHHHHHhhcCC----CCHHHHHHHHHHHHHhcCCC--CChHHHHHcCcHHHHHHh
Q 004073 531 GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK----TEHQCKLDALHALYNLSTIP--SNIPNLLSAGIISGLQSL 604 (775)
Q Consensus 531 ~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~----~~~~~k~~Al~aL~nLs~~~--~nk~~iv~aG~V~~Lv~L 604 (775)
.+|.+.+..++.+++.|..+.+....--|.-.|+.. .-+-.+-.+++++..|...+ +....+...++||..+..
T Consensus 68 cnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~ 147 (262)
T PF04078_consen 68 CNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI 147 (262)
T ss_dssp HHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence 457888888999999999888877655555555433 12457888999999998633 356666779999999999
Q ss_pred ccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCC-------cHHHHHH-HhcCCCHHHHHHHHHHHHHhhcCChHhHHHH
Q 004073 605 AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPG-------LVSGLAT-VLDTGELIEQEQAVSCLFLLCNGNEKCCQMV 676 (775)
Q Consensus 605 L~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g-------~I~~Lv~-lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v 676 (775)
+..|+.--+..|.-++..+-.++.|-.-+..+.. ++..+|. +....+++.-.+.+++-..|+.+. ..+.++
T Consensus 148 me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp-rar~aL 226 (262)
T PF04078_consen 148 MEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP-RAREAL 226 (262)
T ss_dssp HHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST-THHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH-HHHHHH
Confidence 9888887778899999998888888777665432 2222332 233679999999999999998876 445544
Q ss_pred HHCCCHHH-H----HHhhhcCChHHHHHHHHHHHHhH
Q 004073 677 LQEGVIPA-L----VSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 677 ~~~G~i~~-L----v~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
.+ .+|. | ..-...+++.+|+.=..++.++.
T Consensus 227 ~~--~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 227 RQ--CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp HH--HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHTT
T ss_pred HH--hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 43 2222 2 11222357777877777777664
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=87.43 E-value=23 Score=40.30 Aligned_cols=137 Identities=15% Similarity=0.214 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhhccC---CchhHHHHhhCcHHHHHHHhccCCh---------HHHHHHHHhcccccCCccccccccCc
Q 004073 488 YAQEIGAMALFNLAVNN---NRNKELMLAAGVIPLLEKMISNSNS---------HGAATALYLNLSFLDDAKPIIGSSHA 555 (775)
Q Consensus 488 ~~qe~A~~aL~nLs~~~---~~nk~~i~~~G~i~~Lv~lL~s~~~---------~~~AaaaL~~Ls~~~~~k~~I~~~g~ 555 (775)
.-|-.|+-....+..++ ..||+.+.++=+++.+-++|.+++. +.-+.++|.-++..++-...----..
T Consensus 26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v~~ 105 (698)
T KOG2611|consen 26 EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMVSR 105 (698)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHHHh
Confidence 33455554455554322 2468888888888899999976431 24466666666666553321111367
Q ss_pred hHHHHHhhcCCCCHH------HHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhc--cCCChHHHHHHHHHHHHHhC
Q 004073 556 VPFLVELCKGKTEHQ------CKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA--VPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 556 i~~LV~LL~~~~~~~------~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL--~~~~~~i~e~al~~L~nLa~ 625 (775)
||.|..++..+.+++ ..+++-..|+.+++.+.....++..|+++.+-++- .+.... ...++.++..++.
T Consensus 106 IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d-~alal~Vlll~~~ 182 (698)
T KOG2611|consen 106 IPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHD-MALALKVLLLLVS 182 (698)
T ss_pred hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchh-HHHHHHHHHHHHH
Confidence 999999998664444 88999999999999999999999999999999843 333222 1344444444443
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=87.12 E-value=26 Score=38.31 Aligned_cols=190 Identities=18% Similarity=0.167 Sum_probs=104.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc--cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 503 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~--~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 503 (775)
+.+...+..|... ....|..++..|..+.....-. ..+.+ .-.+..+.+.++. +...-+.-|+.++.-++..
T Consensus 43 ~~L~~~Id~l~eK-~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkk----g~~~E~~lA~~~l~Ll~lt 116 (309)
T PF05004_consen 43 DKLKEAIDLLTEK-SSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKK----GKSEEQALAARALALLALT 116 (309)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHhhh
Confidence 3456667777666 7889999999999988654322 22222 3456677777776 4445555566555444432
Q ss_pred --CCchhHHHHhhCcHHHHHHHhccCCh----HHHHH---HHHhcccccCCccccccc-cCchHHHH--HhhcC-C----
Q 004073 504 --NNRNKELMLAAGVIPLLEKMISNSNS----HGAAT---ALYLNLSFLDDAKPIIGS-SHAVPFLV--ELCKG-K---- 566 (775)
Q Consensus 504 --~~~nk~~i~~~G~i~~Lv~lL~s~~~----~~~Aa---aaL~~Ls~~~~~k~~I~~-~g~i~~LV--~LL~~-~---- 566 (775)
.......+. ....|.|..++..+.. +..++ +++..++..+. ..+.. -..+..+. ..++. +
T Consensus 117 lg~g~~~~ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~--~~~~~~~~~le~if~~~~~~~~~~~~~ 193 (309)
T PF05004_consen 117 LGAGEDSEEIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE--EETEELMESLESIFLLSILKSDGNAPV 193 (309)
T ss_pred cCCCccHHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh--hHHHHHHHHHHHHHHHHhcCcCCCccc
Confidence 223333333 3578888888876653 12222 33333333221 11100 01222111 11121 1
Q ss_pred ----CCHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 004073 567 ----TEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 624 (775)
Q Consensus 567 ----~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa 624 (775)
.++.+..+|+.+-.-|.+.- .....-.-...++.|+.+|.+.+..++..|-.+|+-|.
T Consensus 194 ~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 194 VAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred ccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 13567777777766665433 32222222457999999999999888887777776664
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=86.79 E-value=1.3 Score=45.83 Aligned_cols=81 Identities=23% Similarity=0.229 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHcCc-------HHHHHHhccC-CChHHHHHHHHHHHHHhCCcccHH-HHhhCCCcH
Q 004073 570 QCKLDALHALYNLSTIPSNIPNLLSAGI-------ISGLQSLAVP-GDPMWTEKSLAVLLNLAASAAGKE-EMNSTPGLV 640 (775)
Q Consensus 570 ~~k~~Al~aL~nLs~~~~nk~~iv~aG~-------V~~Lv~LL~~-~~~~i~e~al~~L~nLa~~~e~~~-~i~~~~g~I 640 (775)
.-+..|+.+|+.||..+.|...++..|- +..|+++|.. ++...+|-|+.+|.|||...+... .+....++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 4588999999999999999988887653 3445555543 678889999999999999877655 455556899
Q ss_pred HHHHHHhcCC
Q 004073 641 SGLATVLDTG 650 (775)
Q Consensus 641 ~~Lv~lL~~~ 650 (775)
..|+..|...
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999643
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.60 E-value=0.41 Score=50.63 Aligned_cols=45 Identities=22% Similarity=0.481 Sum_probs=37.8
Q ss_pred CCccccccccccccC---ceecCCCCccchHHHHHHHhcCC--CCCCCCC
Q 004073 280 PEELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGH--STCPKTQ 324 (775)
Q Consensus 280 p~~f~CPIs~~~m~d---PV~~~~G~ty~r~~I~~w~~~~~--~~CP~t~ 324 (775)
-.-|.||+..+.-+| ||.++|||..-+.+..+--+.|. ..||.|-
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 346999999998876 99999999999999988877774 4599983
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=86.42 E-value=2.2 Score=39.66 Aligned_cols=73 Identities=11% Similarity=0.180 Sum_probs=58.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~ 502 (775)
+.+..|+..|..+.+.....-|+..|..+++..+..|..+-+.|+-..+..++.. .|++++.+|+.++-.+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h----~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH----EDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-----SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC----CCHHHHHHHHHHHHHHHH
Confidence 5666777777443367777889999999999999988888889999999999998 899999999999877743
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.75 E-value=13 Score=44.98 Aligned_cols=140 Identities=13% Similarity=0.096 Sum_probs=76.4
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhh
Q 004073 556 VPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS 635 (775)
Q Consensus 556 i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~ 635 (775)
.+-+++.+.+. |.++|+-.--=|.+.+....+.. +. ++..++.=+.+.++.++-.|+++|..|= -.++..
T Consensus 57 f~dViK~~~tr-d~ElKrL~ylYl~~yak~~P~~~-lL---avNti~kDl~d~N~~iR~~AlR~ls~l~-----~~el~~ 126 (757)
T COG5096 57 FPDVIKNVATR-DVELKRLLYLYLERYAKLKPELA-LL---AVNTIQKDLQDPNEEIRGFALRTLSLLR-----VKELLG 126 (757)
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHHhccCHHHH-HH---HHHHHHhhccCCCHHHHHHHHHHHHhcC-----hHHHHH
Confidence 34445555544 66666644444444443333111 11 3444444455566666666666665442 123332
Q ss_pred CCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 636 TPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 636 ~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
..++.+.+++.++++.+|..|+-++..+-+-+ .....+.|.+..+..|+.+.+|.+..+|...|..+...
T Consensus 127 --~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 --NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred --HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 35666666666666677777666666666544 24455566666666666666666666666666555444
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.71 E-value=52 Score=34.87 Aligned_cols=201 Identities=15% Similarity=0.145 Sum_probs=118.2
Q ss_pred hhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccc
Q 004073 465 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSF 542 (775)
Q Consensus 465 i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~ 542 (775)
+....+|+.|+..|... +..+.++..|..+|.++- .. +.++.+.+..+.+.. ++.+..++..+-.
T Consensus 63 ~~~~~Av~~l~~vl~de--sq~pmvRhEAaealga~~--~~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~ 129 (289)
T KOG0567|consen 63 MQDEDAVPVLVEVLLDE--SQEPMVRHEAAEALGAIG--DP---------ESLEILTKYIKDPCKEVRETCELAIKRLEW 129 (289)
T ss_pred hccchhhHHHHHHhccc--ccchHHHHHHHHHHHhhc--ch---------hhHHHHHHHhcCCccccchHHHHHHHHHHH
Confidence 34467889999888752 256778888888888873 22 233344444422211 2323333332221
Q ss_pred cC---C--ccccc--------cccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCC
Q 004073 543 LD---D--AKPII--------GSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGD 609 (775)
Q Consensus 543 ~~---~--~k~~I--------~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~ 609 (775)
.+ . +.... ...+-+..|-..|.+.+.+-..+. .++|.|--.. -..+|..|++=+..++
T Consensus 130 ~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry--~amF~LRn~g-------~EeaI~al~~~l~~~S 200 (289)
T KOG0567|consen 130 KDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY--RAMFYLRNIG-------TEEAINALIDGLADDS 200 (289)
T ss_pred hhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH--hhhhHhhccC-------cHHHHHHHHHhcccch
Confidence 11 0 11111 112334555555544412333222 4444441110 0125666777676667
Q ss_pred hHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHH
Q 004073 610 PMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT--GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS 687 (775)
Q Consensus 610 ~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~--~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~ 687 (775)
.-.+..+..+|..|-+ .-.|+.|.+.|.. ..|-+|..|+.+|..++... .++.|..
T Consensus 201 alfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~-----------~~~vL~e 258 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED-----------CVEVLKE 258 (289)
T ss_pred HHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH-----------HHHHHHH
Confidence 7778888888877633 4678999998874 57899999999999987754 4666777
Q ss_pred hhhcCChHHHHHHHHHHHHhHh
Q 004073 688 ISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 688 Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
.+.+..+-+++.+.-.|.++..
T Consensus 259 ~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 259 YLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HcCCcHHHHHHHHHHHHHHHHH
Confidence 7777888888888888877653
|
|
| >PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A | Back alignment and domain information |
|---|
Probab=85.63 E-value=0.21 Score=41.88 Aligned_cols=47 Identities=23% Similarity=0.712 Sum_probs=23.1
Q ss_pred cccccccccccc-C---ceec----CCCCccchHHHHHHHhc--CC--------CCCCCCCCCCC
Q 004073 282 ELRCPISLQLMY-D---PVII----ASGQTYERICIEKWLSD--GH--------STCPKTQQKLP 328 (775)
Q Consensus 282 ~f~CPIs~~~m~-d---PV~~----~~G~ty~r~~I~~w~~~--~~--------~~CP~t~~~l~ 328 (775)
+..|+||..... + |+++ .||++|=..|+.+||.. +. .+||.|+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 578999998754 2 5554 57999999999999962 21 25999988764
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=85.45 E-value=7 Score=46.82 Aligned_cols=135 Identities=18% Similarity=0.164 Sum_probs=100.7
Q ss_pred HHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCC-ccccccc-cCchHHHHHhhcCC
Q 004073 491 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD-AKPIIGS-SHAVPFLVELCKGK 566 (775)
Q Consensus 491 e~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~-~k~~I~~-~g~i~~LV~LL~~~ 566 (775)
-.++.+|.||+..++..|..|.+.-+++.|-.++-..+. +..++..+.||...+. +...|++ ....+.....+...
T Consensus 560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~ 639 (748)
T KOG4151|consen 560 FEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA 639 (748)
T ss_pred HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh
Confidence 567889999988777778888888778777766655554 4556677788887654 5566776 56778888777776
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChHH-HHH-cCcHHHHHHhccCCChHHHHHHHHHHHHHhCC
Q 004073 567 TEHQCKLDALHALYNLSTIPSNIPN-LLS-AGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS 626 (775)
Q Consensus 567 ~~~~~k~~Al~aL~nLs~~~~nk~~-iv~-aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~ 626 (775)
......+++.++..+.+..+|.-. +.+ ......++.++.+.+..++...+.+..|+...
T Consensus 640 -~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~ 700 (748)
T KOG4151|consen 640 -DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA 700 (748)
T ss_pred -hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH
Confidence 888888888888877776665444 443 56777888888888888888888888886554
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=85.21 E-value=4 Score=43.08 Aligned_cols=83 Identities=10% Similarity=0.049 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHH
Q 004073 444 KCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKM 523 (775)
Q Consensus 444 q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~l 523 (775)
...|+..|.-++--++..|..+.....+..|+++|... ..+.+|..++.+|..+-.++..|...+-+.+++..++.+
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~---~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPS---NPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccC---CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 45577788888877899999999999999999999542 578899999999988878888999988999999999999
Q ss_pred hccCCh
Q 004073 524 ISNSNS 529 (775)
Q Consensus 524 L~s~~~ 529 (775)
+++...
T Consensus 185 lk~~~~ 190 (257)
T PF08045_consen 185 LKSKST 190 (257)
T ss_pred Hccccc
Confidence 998764
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.04 E-value=0.47 Score=53.06 Aligned_cols=50 Identities=18% Similarity=0.482 Sum_probs=37.7
Q ss_pred CCccccccccccc-----------------cCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLM-----------------YDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 280 p~~f~CPIs~~~m-----------------~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
-..--|+||+.-. ++=++.||.|.|-|.|+++|.+.-.-.||+|+.+|++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3445799987531 1123458999999999999998655689999999864
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.79 E-value=7.6 Score=47.34 Aligned_cols=174 Identities=19% Similarity=0.150 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCChHHHHHHHHhccccc--CCccccccccCchHHHHHh
Q 004073 485 RNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFL--DDAKPIIGSSHAVPFLVEL 562 (775)
Q Consensus 485 ~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~--~~~k~~I~~~g~i~~LV~L 562 (775)
.|.++++.|+.++..+...-. .....--...++.+++-|.+..++-.|+.++..++.. +-++..++ ..+++.|+..
T Consensus 582 ~DqeVkeraIscmgq~i~~fg-D~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l-~~il~~l~~f 659 (1233)
T KOG1824|consen 582 SDQEVKERAISCMGQIIANFG-DFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVL-TEILPELASF 659 (1233)
T ss_pred ccHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhH-HHHHHHHHHH
Confidence 688999999988876643111 1111112457888888888888888888888765543 33333333 4578899998
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCCC--CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcH
Q 004073 563 CKGKTEHQCKLDALHALYNLSTIP--SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLV 640 (775)
Q Consensus 563 L~~~~~~~~k~~Al~aL~nLs~~~--~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I 640 (775)
++.. ....+...+.++-.|..+. .....++++ ++..|-.|+.+.+..++..|+..|..++........-.. .-.+
T Consensus 660 lrK~-~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~-~~iL 736 (1233)
T KOG1824|consen 660 LRKN-QRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKIS-NPIL 736 (1233)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHh-hhhH
Confidence 8875 5555666666666665322 223333333 444455567777888899999999999886654443333 3678
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHh
Q 004073 641 SGLATVLDTGELIEQEQAVSCLFLL 665 (775)
Q Consensus 641 ~~Lv~lL~~~s~~~~e~Av~~L~~L 665 (775)
..++.+++ ||-.+-.|..+++.+
T Consensus 737 ~~ii~ll~--Spllqg~al~~~l~~ 759 (1233)
T KOG1824|consen 737 DEIIRLLR--SPLLQGGALSALLLF 759 (1233)
T ss_pred HHHHHHhh--CccccchHHHHHHHH
Confidence 88888886 456666666665543
|
|
| >KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.71 E-value=0.62 Score=49.07 Aligned_cols=30 Identities=23% Similarity=0.519 Sum_probs=28.0
Q ss_pred CCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 299 ASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 299 ~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
+|||+.|-+|...-|..|...||.|+..|-
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 899999999999999999999999988764
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.31 E-value=8.2 Score=44.41 Aligned_cols=150 Identities=14% Similarity=0.052 Sum_probs=101.2
Q ss_pred HHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCC---CHHHHHHHHHHHHHhcCCCCChHHHH
Q 004073 519 LLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT---EHQCKLDALHALYNLSTIPSNIPNLL 593 (775)
Q Consensus 519 ~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~---~~~~k~~Al~aL~nLs~~~~nk~~iv 593 (775)
.+..++.+|+. +..|...|..|+.+......+....++..|..++.+|. +.....-.+.++..|-.+.-.--..+
T Consensus 87 ~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~~ 166 (713)
T KOG2999|consen 87 RIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWESV 166 (713)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeeec
Confidence 34556666654 33366667777777766666677788999999999882 23566666777766643332222223
Q ss_pred HcCcHHHHHHhcc--CCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 004073 594 SAGIISGLQSLAV--PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 594 ~aG~V~~Lv~LL~--~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
...+|.....+.. .-+..+-..|+.+|.++..+.......+..+--+..|+..|..++..++-+|.+.+-++...
T Consensus 167 ~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 167 SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 3334444444432 22445558899999999988876555555568899999999999999999999988888753
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=84.24 E-value=16 Score=38.64 Aligned_cols=97 Identities=12% Similarity=0.081 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhC-CcccHHHHhhCCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhh
Q 004073 613 TEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLD-TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISV 690 (775)
Q Consensus 613 ~e~al~~L~nLa~-~~e~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~ 690 (775)
...|+.+|.-+|- ++..+..+.. ...+..|+++|. ..++.++-.++.+|..+...++.+.+...+.+|+..++.++.
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 3456677777776 5666666666 488999999995 468999999999999999998899999999999999999887
Q ss_pred cC--ChHHHHHHHHHHHHhHhc
Q 004073 691 NG--STRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 691 ~g--~~~~k~kA~~LL~~L~~~ 710 (775)
+. +..+|-|....|..+--.
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred cccccHHHhHHHHHHHHHHHcc
Confidence 64 677888888776655433
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.08 E-value=0.28 Score=57.51 Aligned_cols=48 Identities=21% Similarity=0.441 Sum_probs=40.6
Q ss_pred CccccccccccccCceec---CCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDPVII---ASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~---~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
..-.||+|+.-+.|-.+. .|||-||.+||..|-.- -.|||.|+..+..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 345899999999999875 69999999999999863 5699999987754
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=83.77 E-value=0.26 Score=58.93 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=39.5
Q ss_pred cccccccccccCceecCCCCccchHHHHHHHhc-CCCCCCCCCCCCCCC
Q 004073 283 LRCPISLQLMYDPVIIASGQTYERICIEKWLSD-GHSTCPKTQQKLPHL 330 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~-~~~~CP~t~~~l~~~ 330 (775)
+.|+||.+ ..+||++.|||.||+.|+.+.+.. ....||.|+..+.+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 99999999 888999999999999999997763 334699998766543
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=83.42 E-value=5.8 Score=39.50 Aligned_cols=94 Identities=14% Similarity=0.195 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCC-CHHHHHHh
Q 004073 610 PMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEG-VIPALVSI 688 (775)
Q Consensus 610 ~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G-~i~~Lv~L 688 (775)
+.++-.++.+|.-|+..-. .+++ ..++.+...|.+.++.+|..|+.+|..|-..+. +.-.| .+..++.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~---~~ve--~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP---NLVE--PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc---HHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence 5567788888888876443 3332 568899999999999999999999999987541 11223 34777788
Q ss_pred hhcCChHHHHHHHHHHHHhHhccCC
Q 004073 689 SVNGSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 689 l~~g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
+.+.++.++..|..++..+......
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~ 96 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNP 96 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999888877533
|
|
| >KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=83.32 E-value=0.54 Score=51.21 Aligned_cols=46 Identities=22% Similarity=0.392 Sum_probs=39.5
Q ss_pred ccccccccccCceecCCCCccchHHHHHHHhc-CCCCCCCCCCCCCC
Q 004073 284 RCPISLQLMYDPVIIASGQTYERICIEKWLSD-GHSTCPKTQQKLPH 329 (775)
Q Consensus 284 ~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~-~~~~CP~t~~~l~~ 329 (775)
+|-||-+==+|=-|=+|||-.|-.|+..|... +..+||.|+-.+..
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 79999998888777799999999999999964 47899999866643
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=83.18 E-value=2.2 Score=39.69 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=55.9
Q ss_pred CcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 638 GLVSGLATVLD-TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 638 g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
..+..|+++|. +.++.+..-|+.=|..+++.-+..+..+-+.|+=..++.|+.+.++++|..|...++.+-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 46788899995 346666777777788888877788888888888889999999999999999999887664
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=83.09 E-value=1.7 Score=30.09 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=24.9
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004073 556 VPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 556 i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
+|.+++++.++ +++++..|+.+|.+++.
T Consensus 2 lp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 78999999999 99999999999999864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF14447 Prok-RING_4: Prokaryotic RING finger family 4 | Back alignment and domain information |
|---|
Probab=82.25 E-value=0.88 Score=35.99 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=33.5
Q ss_pred cccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 004073 283 LRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 330 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~ 330 (775)
..|=.+...=...++++|||..++.| |-.+.-+-||.|+.++...
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~---f~~~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNC---FPGERYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEccccccccccccccceeeccc---cChhhccCCCCCCCcccCC
Confidence 34445566667788999999999988 4334566799999998654
|
|
| >KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.24 E-value=0.73 Score=53.14 Aligned_cols=60 Identities=25% Similarity=0.424 Sum_probs=42.0
Q ss_pred Cccccccccccc----cCceecCCCCccchHHHHHHHhcCCCCCCCCCCC---C-CCCCCcccHHHHHHHH
Q 004073 281 EELRCPISLQLM----YDPVIIASGQTYERICIEKWLSDGHSTCPKTQQK---L-PHLCLTPNYCVKGLIA 343 (775)
Q Consensus 281 ~~f~CPIs~~~m----~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~---l-~~~~l~pn~~l~~~i~ 343 (775)
+-++|+||..+| ..||.+-||||.||.|.++-.+. +||.-+.. + ..++.--|++|-+++.
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp~~~De~~~~~~~~e~p~n~alL~~~~ 77 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCPTKRDEDSSLMQLKEEPRNYALLRREH 77 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCCCCccccchhcChhhcchhHHHHHhhc
Confidence 457999997766 47999999999999999998754 78832211 1 1234555777766663
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=82.04 E-value=7 Score=38.89 Aligned_cols=92 Identities=21% Similarity=0.157 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcH-HHHHHH
Q 004073 568 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLV-SGLATV 646 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I-~~Lv~l 646 (775)
++.++.+++.+|.-|+....|- ++ ..++.+...|.++++.++..|+.+|..|...+--+. .|-+ ..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~---ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~-----k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL---VE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV-----KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH---HH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee-----hhhhhHHHHHH
Confidence 4678999999999998755442 22 257788888999999999999999999987532222 2333 788888
Q ss_pred hcCCCHHHHHHHHHHHHHhhcC
Q 004073 647 LDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 647 L~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
+.+.++.++..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8899999999999999998865
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.02 E-value=15 Score=46.00 Aligned_cols=252 Identities=14% Similarity=0.113 Sum_probs=131.8
Q ss_pred CHHHHHHHHHHHHHHhcc-ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhh---ccCCchhHHHHhhC
Q 004073 440 NLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA---VNNNRNKELMLAAG 515 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~-~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs---~~~~~nk~~i~~~G 515 (775)
..+.+.+|++-|..|+.. +++++. .-++|-+|.++.. .+..+|..|+.+|..+- ..-+.+-..+.-.-
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~D----s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY 507 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMD----SEADVRATALETLTELLALVRDIPPSDANIFPEY 507 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcC----chHHHHHHHHHHHHHHHhhccCCCcccchhhHhh
Confidence 568899999999999864 233322 3568999999987 78899999988876652 11222233344556
Q ss_pred cHHHHHHHhccCCh---HHH--------HHHHHh--cccc--------cCCccccccc---cCchHHHH--------Hhh
Q 004073 516 VIPLLEKMISNSNS---HGA--------ATALYL--NLSF--------LDDAKPIIGS---SHAVPFLV--------ELC 563 (775)
Q Consensus 516 ~i~~Lv~lL~s~~~---~~~--------AaaaL~--~Ls~--------~~~~k~~I~~---~g~i~~LV--------~LL 563 (775)
.+|.|-.++...+. +.. |-.++. +++. ++.+-..... ......|+ .||
T Consensus 508 lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLl 587 (1431)
T KOG1240|consen 508 LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLL 587 (1431)
T ss_pred hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 88999999876332 111 111111 1111 1111110110 01111111 222
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcC----cHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCc
Q 004073 564 KGKTEHQCKLDALHALYNLSTIPSNIPNLLSAG----IISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGL 639 (775)
Q Consensus 564 ~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG----~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~ 639 (775)
.+. .+-+|..-+. +|+. -+.-+.+.+ +++.|+.+|++.+..++-.-...|.-+|.. -|+..+ .+..
T Consensus 588 sd~-~~~Vkr~Lle---~i~~---LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~-VG~rs~--seyl 657 (1431)
T KOG1240|consen 588 SDS-PPIVKRALLE---SIIP---LCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIF-VGWRSV--SEYL 657 (1431)
T ss_pred cCC-chHHHHHHHH---HHHH---HHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEE-EeeeeH--HHHH
Confidence 222 2222221111 1211 111222221 445556666655444332222222222211 111111 2467
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 640 VSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 640 I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
+|.|..-|.++.+.+-..|+++|..||...--.+..+.+ .++-..-++-.++.-+|+.+..++-...++-
T Consensus 658 lPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 658 LPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 888888888999999999999999999754211122211 2333446677888999999998876555443
|
|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.90 E-value=0.68 Score=50.37 Aligned_cols=50 Identities=28% Similarity=0.381 Sum_probs=43.2
Q ss_pred ccccccccccccC---ceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 004073 282 ELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC 331 (775)
Q Consensus 282 ~f~CPIs~~~m~d---PV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~ 331 (775)
.+.|.|++++|-| |++.|.|++|-..+|+.|-...+-.||.++..+....
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~ 382 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSE 382 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHH
Confidence 3789999999987 9999999999999999998765589999998876543
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.37 E-value=31 Score=42.17 Aligned_cols=223 Identities=15% Similarity=0.134 Sum_probs=130.4
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+....+....|-...+..++..++..+.++++.-.. .....+.++.++.++.. +...+++.|...+.++...-
T Consensus 235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~D----dqdsVr~~a~~~~~~l~~l~ 307 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRD----DQDSVREAAVESLVSLLDLL 307 (759)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhc----chhhHHHHHHHHHHHHHHhc
Confidence 344556666665555778899999999888876433 56678999999999986 45567888877776664211
Q ss_pred CchhHHHHhhCcHHHHHHHhccCChH--HHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
+ ...=...-..+.++.....++.+ -+.+.....|+..- ....+...-+++...++++. ..+.+..++.-...+
T Consensus 308 ~--~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~--~~~~~~~~~~~~~~~l~~~~-~~e~r~a~a~~~~~l 382 (759)
T KOG0211|consen 308 D--DDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAV--GPSATRTQLVPPVSNLLKDE-EWEVRYAIAKKVQKL 382 (759)
T ss_pred C--CchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHh--ccccCcccchhhHHHHhcch-hhhhhHHhhcchHHH
Confidence 1 11022345677788887776643 12222222222211 11333455678888888876 555665555555555
Q ss_pred cC--CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHH
Q 004073 583 ST--IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS 660 (775)
Q Consensus 583 s~--~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~ 660 (775)
+. +.+....+....++|.+..++.+.+..++...+..+.++.-.-. +..-+ +-..+.+...+++..+.++.+-..
T Consensus 383 ~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti--~~llp~~~~~l~de~~~V~lnli~ 459 (759)
T KOG0211|consen 383 ACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTI--SELLPLLIGNLKDEDPIVRLNLID 459 (759)
T ss_pred hhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCc--cccChhhhhhcchhhHHHHHhhHH
Confidence 53 33456666666677888877777776666665555555533111 11111 124455555555556666666554
Q ss_pred HH
Q 004073 661 CL 662 (775)
Q Consensus 661 ~L 662 (775)
.|
T Consensus 460 ~l 461 (759)
T KOG0211|consen 460 KL 461 (759)
T ss_pred HH
Confidence 33
|
|
| >COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.56 E-value=1.1 Score=37.96 Aligned_cols=28 Identities=25% Similarity=0.729 Sum_probs=25.5
Q ss_pred CCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004073 299 ASGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 299 ~~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
.|.|.|--.||.+|++. ...||.++|+.
T Consensus 53 ~CnHaFH~HCI~rWL~T-k~~CPld~q~w 80 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT-KGVCPLDRQTW 80 (88)
T ss_pred ecchHHHHHHHHHHHhh-CCCCCCCCcee
Confidence 69999999999999997 77999999875
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.48 E-value=4.1 Score=47.84 Aligned_cols=108 Identities=18% Similarity=0.056 Sum_probs=71.4
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhC-----CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHh
Q 004073 598 ISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST-----PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKC 672 (775)
Q Consensus 598 V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~-----~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~ 672 (775)
...+++||++.+..++-..+.+.+|++.+-....+++++ ...+..|++-+.+..|-.+..|+.++..+|.-+...
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 345778888888877788888999987744333333331 123445555556789999999999999999654221
Q ss_pred HHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004073 673 CQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 673 ~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
.. .++.++...+.-+.+-+..+|++|.+++.-|
T Consensus 381 ~~--~r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 381 VG--RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred cc--hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 10 1112233344667788899999999988533
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 775 | ||||
| 1t1h_A | 78 | Nmr Solution Structure Of The U Box Domain From Atp | 2e-23 |
| >pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 1e-39
Identities = 48/75 (64%), Positives = 57/75 (76%)
Query: 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 336
P PE RCPISL+LM DPVI+++GQTYER I+KWL GH TCPK+Q+ L H LTPNY
Sbjct: 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 62
Query: 337 CVKGLIASWCEMNGV 351
+K LIA WCE NG+
Sbjct: 63 VLKSLIALWCESNGI 77
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 3e-37
Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 7/161 (4%)
Query: 193 RVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEH 252
+ + +E ++ L SKL +E + D + +
Sbjct: 24 KKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGDISKM-----KS 78
Query: 253 AFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKW 312
D+ L + + + +R + P+ L IS +LM +P I SG TY+R IE+
Sbjct: 79 KHDKYLMDMDELFSQVDEKR--KKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEH 136
Query: 313 LSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVSV 353
L P T+ L L PN +K +I ++ + NG
Sbjct: 137 LQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVE 177
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 5e-31
Identities = 58/280 (20%), Positives = 99/280 (35%), Gaps = 13/280 (4%)
Query: 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 490
+ + ++ + L E + G + AL++ L S
Sbjct: 64 IVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGG-IPALVKMLGSP----VDSVL 118
Query: 491 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLD-DA 546
L NL ++ K + AG + + +++ +N L L++ + ++
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ-ILAYGNQES 177
Query: 547 KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV 606
K II +S LV + + T + L LS SN P ++ AG + L
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 237
Query: 607 PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666
+ L L NL+ +A +E M GL+ L +L + ++ A L L
Sbjct: 238 DPSQRLVQNCLWTLRNLSDAATKQEGME---GLLGTLVQLLGSDDINVVTCAAGILSNLT 294
Query: 667 NGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML 706
N K MV Q G I ALV + R + L
Sbjct: 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 5e-21
Identities = 50/286 (17%), Positives = 100/286 (34%), Gaps = 16/286 (5%)
Query: 429 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSY 488
Q + +LN+ N+ + +++L ++E+++ A+G AL+ + +
Sbjct: 146 QKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEK 201
Query: 489 AQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALY--LNLSFLDDA 546
+ L L+V ++ NK ++ AG + L +++ + L+ NLS D A
Sbjct: 202 LLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAA 258
Query: 547 KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLA 605
G + LV+L + A L NL+ N + G I L
Sbjct: 259 TKQEGMEGLLGTLVQLLGSDDINV-VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 317
Query: 606 VPGDPMW--TEKSLAVLLNLAASAAGKEEMNS---TPGLVSGLATVLDTGELIEQEQAVS 660
+ TE ++ L +L + E + + + +L +A
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377
Query: 661 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML 706
L + ++G IP LV + V + +
Sbjct: 378 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 91.8 bits (228), Expect = 2e-19
Identities = 41/256 (16%), Positives = 86/256 (33%), Gaps = 16/256 (6%)
Query: 451 IRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL 510
+ L+ ++A + T A + L + L + A+ + L+ +
Sbjct: 2 VVNLINYQDDAELATRA---IPELTKLLNDE----DQVVVNKAAVMVHQLSKKEASRHAI 54
Query: 511 MLAAGVIPLLEKMISNSNS----HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK 566
M + ++ + + + N+N A L+ NLS + I S +P LV++
Sbjct: 55 MRSPQMVSAIVRTMQNTNDVETARCTAGTLH-NLSHHREGLLAIFKSGGIPALVKMLGSP 113
Query: 567 TEHQCKLDALHALYNLSTIPSNIPNL-LSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625
+ A+ L+NL AG + + +L + + + L LA
Sbjct: 114 VD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172
Query: 626 SAAGKEEMNSTPGLVSGLATVLDTGELIE-QEQAVSCLFLLCNGNEKCCQMVLQEGVIPA 684
+ + G L ++ T + L +L + +++ G + A
Sbjct: 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQA 231
Query: 685 LVSISVNGSTRGRDKA 700
L + S R
Sbjct: 232 LGLHLTDPSQRLVQNC 247
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 2e-19
Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 9/214 (4%)
Query: 496 ALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDA-KPIIG 551
A+ NL N + LA IP L K++++ + + AA + LS + + I+
Sbjct: 1 AVVNLI---NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMV-HQLSKKEASRHAIMR 56
Query: 552 SSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPM 611
S V +V + + + L+NLS + + +G I L +
Sbjct: 57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDS 116
Query: 612 WTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEK 671
++ L NL G + G + + +L+ + CL +L GN++
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176
Query: 672 CCQMVLQEGVIPALVSISVNGSTRG-RDKAQRLL 704
++L G ALV+I + R+L
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 210
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 2e-18
Identities = 49/297 (16%), Positives = 90/297 (30%), Gaps = 41/297 (13%)
Query: 439 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALF 498
+ N + +R L + G + L++ L S + A L
Sbjct: 239 PSQRLVQNCLWTLRNLSDAATKQEGMEGL---LGTLVQLLGSD----DINVVTCAAGILS 291
Query: 499 NLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG-----AATALYLNLSFLDDAKPI---- 549
NL NN +NK ++ G I L + + + A AL +L+ +
Sbjct: 292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR-HLTSRHQEAEMAQNA 350
Query: 550 IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGD 609
+ + +P +V+L + + + NL+ P+N L G I L L V
Sbjct: 351 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH 410
Query: 610 PMW----------------------TEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL 647
E L LA + + + +L
Sbjct: 411 QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL-NTIPLFVQLL 469
Query: 648 DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704
+ Q A L L +++ + + EG L + + + A +L
Sbjct: 470 YSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 3e-13
Identities = 32/219 (14%), Positives = 68/219 (31%), Gaps = 34/219 (15%)
Query: 434 VLNEGENLGQKCNIVEQIRLL---LKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 490
VL G+ + +R L ++ E A+ + + +++ L + +
Sbjct: 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP----SHWPL 372
Query: 491 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--------------------- 529
+ L N + G IP L +++ ++
Sbjct: 373 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 432
Query: 530 ----HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 585
G AL+ L+ + +I + +P V+L E + A L L+
Sbjct: 433 EEIVEGCTGALH-ILARDVHNRIVIRGLNTIPLFVQLLYSPIE-NIQRVAAGVLCELAQD 490
Query: 586 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 624
+ + G + L L + + AVL ++
Sbjct: 491 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 7e-30
Identities = 57/275 (20%), Positives = 96/275 (34%), Gaps = 13/275 (4%)
Query: 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 490
+ + ++ L E + +G + AL+ L S
Sbjct: 197 IVRTMQNTNDVETARCTSG-TLHNLSHHREGLLAIFKSGGIPALVNMLGSP----VDSVL 251
Query: 491 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLD-DA 546
L NL ++ K + AG + + +++ +N L L++ + ++
Sbjct: 252 FHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ-ILAYGNQES 310
Query: 547 KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV 606
K II +S LV + + T + L LS SN P ++ AG + L
Sbjct: 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 370
Query: 607 PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666
+ L L NL+ +A +E M GL+ L +L + ++ A L L
Sbjct: 371 DPSQRLVQNCLWTLRNLSDAATKQEGME---GLLGTLVQLLGSDDINVVTCAAGILSNLT 427
Query: 667 NGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQ 701
N K MV Q G I ALV + R
Sbjct: 428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 462
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 95.1 bits (236), Expect = 2e-20
Identities = 49/287 (17%), Positives = 98/287 (34%), Gaps = 18/287 (6%)
Query: 429 QDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSY 488
Q + +LN+ N+ + +++L ++E+++ A+G AL+ + +
Sbjct: 279 QKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEK 334
Query: 489 AQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDD 545
+ L L+V ++ NK ++ AG + L +++ + L NLS D
Sbjct: 335 LLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR-NLS--DA 390
Query: 546 AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSL 604
A G + LV+L + A L NL+ N + G I L
Sbjct: 391 ATKQEGMEGLLGTLVQLLGSDDINV-VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 449
Query: 605 AVPGDPMWT--EKSLAVLLNLAASAAGKEEMNSTP---GLVSGLATVLDTGELIEQEQAV 659
+ E ++ L +L + E + + + +L +A
Sbjct: 450 VLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 509
Query: 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML 706
L + ++G IP LV + V + +
Sbjct: 510 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 556
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 89.7 bits (222), Expect = 1e-18
Identities = 54/288 (18%), Positives = 107/288 (37%), Gaps = 12/288 (4%)
Query: 417 EDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVF--TGANGFVVAL 474
E + + ++ N+ N Q +I Q + A +F T G +
Sbjct: 51 NPEDDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPS 110
Query: 475 LRFLES--AVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--- 529
+F + +R + ++ A+ NL N + LA IP L K++++ +
Sbjct: 111 TQFDSAHPTNVQRLAEPSQMLKHAVVNLI---NYQDDAELATRAIPELTKLLNDEDQVVV 167
Query: 530 HGAATALYLNLSFLDDAK-PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSN 588
+ AA + LS + ++ I+ S V +V + + + L+NLS
Sbjct: 168 NKAAVMV-HQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG 226
Query: 589 IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD 648
+ + +G I L ++ ++ L NL G + G + + +L+
Sbjct: 227 LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 286
Query: 649 TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRG 696
+ CL +L GN++ ++L G ALV+I +
Sbjct: 287 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 334
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 87.8 bits (217), Expect = 5e-18
Identities = 51/297 (17%), Positives = 91/297 (30%), Gaps = 41/297 (13%)
Query: 439 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALF 498
+ N + +R L + G G +V LL + A L
Sbjct: 372 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG-------SDDINVVTCAAGILS 424
Query: 499 NLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG-----AATALYLNLSF----LDDAKPI 549
NL NN +NK ++ G I L + + + A AL +L+ + A+
Sbjct: 425 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL-RHLTSRHQDAEMAQNA 483
Query: 550 IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGD 609
+ + +P +V+L + + + NL+ P+N L G I L L V
Sbjct: 484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH 543
Query: 610 PMW----------------------TEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL 647
E L LA + + + +L
Sbjct: 544 QDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRG-LNTIPLFVQLL 602
Query: 648 DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704
+ Q A L L +++ + + EG L + + + A +L
Sbjct: 603 YSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 658
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 2e-13
Identities = 35/238 (14%), Positives = 72/238 (30%), Gaps = 34/238 (14%)
Query: 434 VLNEGENLGQKCNIVEQIRLL---LKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 490
VL G+ + +R L +D E A+ + + +++ L + +
Sbjct: 450 VLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP----SHWPL 505
Query: 491 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--------------------- 529
+ L N + G IP L +++ ++
Sbjct: 506 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 565
Query: 530 ----HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 585
AL+ L+ + +I + +P V+L E + A L L+
Sbjct: 566 EEIVEACTGALH-ILARDIHNRIVIRGLNTIPLFVQLLYSPIE-NIQRVAAGVLCELAQD 623
Query: 586 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGL 643
+ + G + L L + + AVL ++ + + L S L
Sbjct: 624 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSL 681
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 5/98 (5%)
Query: 439 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALF 498
+ + L +D E A L L S RN A LF
Sbjct: 605 PIENIQRVAAGVLCELAQDKEAAEAIEAEGA-TAPLTELLHS----RNEGVATYAAAVLF 659
Query: 499 NLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATAL 536
++ + ++ + L+ + L + + + L
Sbjct: 660 RMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGL 697
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 1e-29
Identities = 58/280 (20%), Positives = 99/280 (35%), Gaps = 13/280 (4%)
Query: 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 490
+ + ++ + L E + G + AL++ L S
Sbjct: 61 IVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGG-IPALVKMLGSP----VDSVL 115
Query: 491 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLD-DA 546
L NL ++ K + AG + + +++ +N L L++ + ++
Sbjct: 116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ-ILAYGNQES 174
Query: 547 KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV 606
K II +S LV + + T + L LS SN P ++ AG + L
Sbjct: 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 234
Query: 607 PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666
+ L L NL+ +A +E M GL+ L +L + ++ A L L
Sbjct: 235 DPSQRLVQNCLWTLRNLSDAATKQEGME---GLLGTLVQLLGSDDINVVTCAAGILSNLT 291
Query: 667 NGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLML 706
N K MV Q G I ALV + R + L
Sbjct: 292 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 6e-20
Identities = 49/286 (17%), Positives = 98/286 (34%), Gaps = 18/286 (6%)
Query: 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 490
+ +LN+ N+ + +++L ++E+++ A+G AL+ + +
Sbjct: 145 MVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLL 200
Query: 491 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAK 547
+ L L+V ++ NK ++ AG + L +++ + L NLS D A
Sbjct: 201 WTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL-RNLS--DAAT 256
Query: 548 PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAV 606
G + LV+L + A L NL+ N + G I L +
Sbjct: 257 KQEGMEGLLGTLVQLLGSDDINV-VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 315
Query: 607 PGDPMW--TEKSLAVLLNLAASAAGKEEMNST---PGLVSGLATVLDTGELIEQEQAVSC 661
TE ++ L +L + E + + + +L +A
Sbjct: 316 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 375
Query: 662 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 707
L + ++G IP LV + V + +
Sbjct: 376 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 421
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 7e-19
Identities = 51/304 (16%), Positives = 93/304 (30%), Gaps = 41/304 (13%)
Query: 432 LNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQE 491
L + + N + +R L + G + L++ L S +
Sbjct: 229 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL---LGTLVQLLGSD----DINVVT 281
Query: 492 IGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG-----AATALYLNLSFLDD- 545
A L NL NN +NK ++ G I L + + + A AL +L+
Sbjct: 282 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL-RHLTSRHQE 340
Query: 546 ---AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQ 602
A+ + + +P +V+L + + + NL+ P+N L G I L
Sbjct: 341 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLV 400
Query: 603 SLAVPGDP----------------------MWTEKSLAVLLNLAASAAGKEEMNSTPGLV 640
L V E L LA + + +
Sbjct: 401 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL-NTI 459
Query: 641 SGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKA 700
+L + Q A L L +++ + + EG L + + + A
Sbjct: 460 PLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 518
Query: 701 QRLL 704
+L
Sbjct: 519 AAVL 522
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 8e-19
Identities = 41/208 (19%), Positives = 79/208 (37%), Gaps = 6/208 (2%)
Query: 505 NRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAK-PIIGSSHAVPFLV 560
N + LA IP L K++++ + + AA + LS + ++ I+ S V +V
Sbjct: 4 NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMV-HQLSKKEASRHAIMRSPQMVSAIV 62
Query: 561 ELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVL 620
+ + + L+NLS + + +G I L + ++ L
Sbjct: 63 RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122
Query: 621 LNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEG 680
NL G + G + + +L+ + CL +L GN++ ++L G
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 182
Query: 681 VIPALVSISVNGSTRG-RDKAQRLLMLF 707
ALV+I + R+L +
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVL 210
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 88.5 bits (219), Expect = 2e-18
Identities = 41/253 (16%), Positives = 86/253 (33%), Gaps = 16/253 (6%)
Query: 454 LLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLA 513
L+ ++A + T A + L + L + A+ + L+ +M +
Sbjct: 2 LINYQDDAELATRA---IPELTKLLNDE----DQVVVNKAAVMVHQLSKKEASRHAIMRS 54
Query: 514 AGVIPLLEKMISNSNS----HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEH 569
++ + + + N+N A L+ NLS + I S +P LV++ +
Sbjct: 55 PQMVSAIVRTMQNTNDVETARCTAGTLH-NLSHHREGLLAIFKSGGIPALVKMLGSPVDS 113
Query: 570 QCKLDALHALYNLSTIPSNIPNLL-SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA 628
A+ L+NL + AG + + +L + + + L LA
Sbjct: 114 V-LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 172
Query: 629 GKEEMNSTPGLVSGLATVLDTGELIE-QEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS 687
+ + G L ++ T + L +L + +++ G + AL
Sbjct: 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGL 231
Query: 688 ISVNGSTRGRDKA 700
+ S R
Sbjct: 232 HLTDPSQRLVQNC 244
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 2e-14
Identities = 39/265 (14%), Positives = 81/265 (30%), Gaps = 37/265 (13%)
Query: 434 VLNEGENLGQKCNIVEQIRLL---LKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 490
VL G+ + +R L ++ E A+ + + +++ L + +
Sbjct: 314 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP----SHWPL 369
Query: 491 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--------------------- 529
+ L N + G IP L +++ ++
Sbjct: 370 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 429
Query: 530 ----HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 585
G AL+ L+ + +I + +P V+L E + A L L+
Sbjct: 430 EEIVEGCTGALH-ILARDVHNRIVIRGLNTIPLFVQLLYSPIE-NIQRVAAGVLCELAQD 487
Query: 586 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLAT 645
+ + G + L L + + AVL + + K + V ++
Sbjct: 488 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM---SEDKPQDYKKRLSVELTSS 544
Query: 646 VLDTGELIEQEQAVSCLFLLCNGNE 670
+ T + E A L + G
Sbjct: 545 LFRTEPMAWNETADLGLDIGAQGEP 569
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 9e-28
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 339
P+E R P+ LM DPV + SG +R I + L T P +Q L L P +K
Sbjct: 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLTESMLEPVPELK 70
Query: 340 GLIASWCE 347
I +W
Sbjct: 71 EQIQAWMR 78
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 3e-27
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCV 338
P+E R P+ LM DPV + SG +R I + L T P +Q L L P +
Sbjct: 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-LNSPTDPFNRQTLTESMLEPVPEL 84
Query: 339 KGLIASWCE 347
K I +W
Sbjct: 85 KEQIQAWMR 93
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 9e-25
Identities = 53/287 (18%), Positives = 93/287 (32%), Gaps = 24/287 (8%)
Query: 440 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-------CERNSYAQEI 492
Q C V + L D+E G + A+ L+ + +
Sbjct: 45 VEHQICPAVCVLMKLSFDEEHRHAMNELGG-LQAIAELLQVDCEMYGLTNDHYSITLRRY 103
Query: 493 GAMALFNLAVNNNRNK-ELMLAAGVIPLLEKMISNSNSH---GAATALYLNLSFLDDA-- 546
MAL NL + NK L G + L + + + A+ L NLS+ D
Sbjct: 104 AGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR-NLSWRADVNS 162
Query: 547 KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSAG-----IISG 600
K + +V L+E + L AL+NLS N ++ + ++
Sbjct: 163 KKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT 222
Query: 601 LQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST---PGLVSGLATVLDTGELIEQEQ 657
L + E +L N+++ A E+ + L L + L
Sbjct: 223 LTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282
Query: 658 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704
A L+ L N K + + G + L ++ + + L
Sbjct: 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 1e-16
Identities = 43/249 (17%), Positives = 80/249 (32%), Gaps = 22/249 (8%)
Query: 453 LLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-NNRNKELM 511
L D G + AL+ L+S + Q++ A L NL+ + +K+ +
Sbjct: 111 LTFGDVANKATLCSMKGCMRALVAQLKSE----SEDLQQVIASVLRNLSWRADVNSKKTL 166
Query: 512 LAAGVIPLLEKMISNSNSHG----AATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKG 565
G + L + +AL+ NLS I A+ FLV
Sbjct: 167 REVGSVKALMECALEVKKESTLKSVLSALW-NLSAHCTENKADICAVDGALAFLVGTLTY 225
Query: 566 KTEHQC---KLDALHALYNLSTI----PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLA 618
+++ L N+S++ + L + L +
Sbjct: 226 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285
Query: 619 VLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN---EKCCQM 675
L NL+A +E G VS L ++ + + + + L L K +
Sbjct: 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANI 345
Query: 676 VLQEGVIPA 684
+ +P+
Sbjct: 346 MSPGSSLPS 354
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 5e-10
Identities = 34/232 (14%), Positives = 66/232 (28%), Gaps = 21/232 (9%)
Query: 491 EIGAMALFN--LAVNNNRNKELMLAAGVIPLLEKMISNSNSH---GAATALYLNLSFLDD 545
+ L A + + + + H A L LSF ++
Sbjct: 6 HHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLM-KLSFDEE 64
Query: 546 AKPIIGSSHAVPFLVELCKGKTEHQCKLD----------ALHALYNLSTIPSNIPNLL-- 593
+ + + + EL + E + A AL NL+ L
Sbjct: 65 HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124
Query: 594 SAGIISGLQSLAVPGDPMWTEKSLAVLLNLA--ASAAGKEEMNSTPGLVSGLATVLDTGE 651
G + L + + +VL NL+ A K+ + + + + L+ +
Sbjct: 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 184
Query: 652 LIEQEQAVSCLFLLCNGN-EKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR 702
+ +S L+ L E + +G + LV S
Sbjct: 185 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 236
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 57/301 (18%), Positives = 102/301 (33%), Gaps = 27/301 (8%)
Query: 439 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-------CERNSYAQE 491
Q C V + L D+E G + A+ L+ + +
Sbjct: 160 PVEHQICPAVCVLMKLSFDEEHRHAMNELGG-LQAIAELLQVDCEMYGLTNDHYSITLRR 218
Query: 492 IGAMALFNLAVNNNRNKELMLA-AGVIPLLEKMISNSNSHG---AATALYLNLSFL--DD 545
MAL NL + NK + + G + L + + + A+ L NLS+ +
Sbjct: 219 YAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR-NLSWRADVN 277
Query: 546 AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSA-GIISGLQS 603
+K + +V L+E + L AL+NLS N ++ + G ++ L
Sbjct: 278 SKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG 337
Query: 604 LAVPGDPMWT----EKSLAVLLNLAASAAGKEEMNST---PGLVSGLATVLDTGELIEQE 656
T E +L N+++ A E+ + L L + L
Sbjct: 338 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 397
Query: 657 QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQ---RLLMLFREQRQR 713
A L+ L N K + + G + L ++ + + R LM R + +
Sbjct: 398 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457
Query: 714 D 714
D
Sbjct: 458 D 458
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 1e-10
Identities = 40/256 (15%), Positives = 78/256 (30%), Gaps = 43/256 (16%)
Query: 489 AQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS------------------- 529
A+ + AL N+ + +K V+ LLE++ + +
Sbjct: 98 ARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPM 157
Query: 530 --------HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLD------- 574
A L LSF ++ + + + + EL + E +
Sbjct: 158 PAPVEHQICPAVCVLM-KLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITL 216
Query: 575 ---ALHALYNLSTIPSNIPNLL--SAGIISGLQSLAVPGDPMWTEKSLAVLLNLA--ASA 627
A AL NL+ L G + L + + +VL NL+ A
Sbjct: 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV 276
Query: 628 AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF-LLCNGNEKCCQMVLQEGVIPALV 686
K+ + + + + L+ + + +S L+ L + E + +G + LV
Sbjct: 277 NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 336
Query: 687 SISVNGSTRGRDKAQR 702
S
Sbjct: 337 GTLTYRSQTNTLAIIE 352
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 40/279 (14%), Positives = 82/279 (29%), Gaps = 63/279 (22%)
Query: 471 VVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSN-- 528
V +LL L + + + + L ++ ++ + M +G +PLL +++ ++
Sbjct: 34 VYSLLSMLGTH-DKDDM------SRTLLAMS-SSQDSCISMRQSGCLPLLIQLLHGNDKD 85
Query: 529 -------------SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK----------- 564
A+ AL+ + D K + L ++
Sbjct: 86 SVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEA 145
Query: 565 --------------GKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDP 610
C A+ L LS + + G + + L
Sbjct: 146 HEPGMDQDKNPMPAPVEHQICP--AVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCE 203
Query: 611 MWTEKSLAVLLNLAASAAG------------KEEMNSTPGLVSGLATVLDTGELIEQEQA 658
M+ + + L A K + S G + L L + Q+
Sbjct: 204 MYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVI 263
Query: 659 VSCLFLLCNGNEKCCQMVLQE-GVIPALVSISVNGSTRG 696
S L L + + L+E G + AL+ ++
Sbjct: 264 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 2e-24
Identities = 56/279 (20%), Positives = 99/279 (35%), Gaps = 10/279 (3%)
Query: 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 490
F+ L EN + + + + G V + L S + Q
Sbjct: 69 FVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFED----VQ 124
Query: 491 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG---AATALYLNLSFLDDAK 547
E AL N+A ++ ++ +L ++P L ++ S N A NL
Sbjct: 125 EQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPP 184
Query: 548 P-IIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQSLA 605
P S + L L DA AL LS P+ I ++ AG+ L L
Sbjct: 185 PEFAKVSPCLNVLSWLLFVSDT-DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL 243
Query: 606 VPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 665
+ D +L + N+ + ++ + L +L + + +++A + +
Sbjct: 244 MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303
Query: 666 CNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704
GN Q V+ + PAL+SI R R +A +
Sbjct: 304 TAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAI 342
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 3e-19
Identities = 47/272 (17%), Positives = 102/272 (37%), Gaps = 9/272 (3%)
Query: 439 ENLGQKCNIVEQIRLLLKDDEEARVFT--GANGFVVALLRFLESAVCERNSYAQEIGAMA 496
++ Q+ + ++ R LL + + G V + FL+ + N Q A
Sbjct: 32 KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKR---KENCTLQFESAWV 88
Query: 497 LFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSH---GAATALYLNLSFLDDAKPIIGSS 553
L N+A N+ +++ AG +P+ +++S+ A AL + +
Sbjct: 89 LTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDC 148
Query: 554 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNL-LSAGIISGLQSLAVPGDPMW 612
+ +P L++L + +A+ AL NL S P + ++ L L D
Sbjct: 149 NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDV 208
Query: 613 TEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKC 672
+ L L+ K + G+ L +L + A+ + + G++
Sbjct: 209 LADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQ 268
Query: 673 CQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704
Q++L + +L+ + + + +A +
Sbjct: 269 TQVILNCSALQSLLHLLSSPKESIKKEACWTI 300
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 29/183 (15%), Positives = 64/183 (34%), Gaps = 12/183 (6%)
Query: 451 IRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL 510
+ L + G L+ L + A+ N+ ++ ++
Sbjct: 216 LSYLSDGPNDKIQAVIDAGVCRRLVELLMHN----DYKVVSPALRAVGNIVTGDDIQTQV 271
Query: 511 MLAAGVIPLLEKMISNSNSHG---AATALYLNLSFLDDA-KPIIGSSHAVPFLVELCKGK 566
+L + L ++S+ A + N++ + A + ++ P L+ + +
Sbjct: 272 ILNCSALQSLLHLLSSPKESIKKEACWTI-SNITAGNRAQIQTVIDANIFPALISILQ-T 329
Query: 567 TEHQCKLDALHALYNLSTIPS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 624
E + + +A A+ N ++ S I L+ G I L L D + +L L N+
Sbjct: 330 AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENIL 389
Query: 625 ASA 627
Sbjct: 390 RLG 392
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 6e-24
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 279 PPEELRCPISLQLMYDPVIIASGQ-TYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYC 337
+E PI LM DPV++ S + T +R I + L T P + L + PN
Sbjct: 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQIRPNTE 77
Query: 338 VKGLIASWCEMN 349
+K I W
Sbjct: 78 LKEKIQRWLAER 89
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 2e-23
Identities = 47/241 (19%), Positives = 101/241 (41%), Gaps = 11/241 (4%)
Query: 469 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSN 528
+ + + L S + Q + + N + ++ AG +P L +++S+ N
Sbjct: 12 SELPQMTQQLNSD----DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN 67
Query: 529 S---HGAATALYLNLSFLDDA-KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 584
A AL N++ + + + A+P LV+L E + +AL AL N+++
Sbjct: 68 EQILQEALWAL-SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIAS 125
Query: 585 I-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGL 643
I ++ AG + L L + +++L L N+A+ + + G + L
Sbjct: 126 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 185
Query: 644 ATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRL 703
+L + ++A+ L + +G + Q V + G + L + + + + + +AQ
Sbjct: 186 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 245
Query: 704 L 704
L
Sbjct: 246 L 246
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 3e-20
Identities = 50/233 (21%), Positives = 98/233 (42%), Gaps = 11/233 (4%)
Query: 439 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALF 498
+++ ++ + + +L D E G + AL++ L S N + AL
Sbjct: 24 DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALS 79
Query: 499 NLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG---AATALYLNLSFLDDA-KPIIGSSH 554
N+A N + ++ AG +P L +++S+ N A AL N++ + + +
Sbjct: 80 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS-NIASGGNEQIQAVIDAG 138
Query: 555 AVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWT 613
A+P LV+L Q +AL AL N+++ I ++ AG + L L +
Sbjct: 139 ALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 197
Query: 614 EKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666
+++L L N+A+ +++ G + L + Q++A L L
Sbjct: 198 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 1e-14
Identities = 40/202 (19%), Positives = 85/202 (42%), Gaps = 5/202 (2%)
Query: 507 NKELMLAAGVIPLLEKMISNSNSH---GAATALYLNLSFLDDAKPIIGSSHAVPFLVELC 563
+ +P + + +++ + A LS ++ + + A+P LV+L
Sbjct: 4 SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63
Query: 564 KGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLN 622
E Q +AL AL N+++ I ++ AG + L L + +++L L N
Sbjct: 64 SSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122
Query: 623 LAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVI 682
+A+ + + G + L +L + ++A+ L + +G + Q V+ G +
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 182
Query: 683 PALVSISVNGSTRGRDKAQRLL 704
PALV + + + + +A L
Sbjct: 183 PALVQLLSSPNEQILQEALWAL 204
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 5e-13
Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 12/178 (6%)
Query: 453 LLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELML 512
+ +E+ + A + AL++ L S N + AL N+A N + ++
Sbjct: 81 IASGGNEQIQAVIDAGA-LPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 513 AAGVIPLLEKMISNSNSHG---AATALYLNLS-FLDDAKPIIGSSHAVPFLVELCKGKTE 568
AG +P L +++S+ N A AL N++ ++ + + A+P LV+L E
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALS-NIASGGNEQIQAVIDAGALPALVQLLSSPNE 194
Query: 569 HQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625
Q +AL AL N+++ + AG + L+ L + +++ L L +
Sbjct: 195 -QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 95.1 bits (236), Expect = 1e-20
Identities = 44/280 (15%), Positives = 100/280 (35%), Gaps = 11/280 (3%)
Query: 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 490
+ + E + + + + V ++ L + + +
Sbjct: 135 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT----GSVEVK 190
Query: 491 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG---AATALYLNLSFLDDAK 547
E AL N+A ++ ++ +L + + + +++ A L NL +
Sbjct: 191 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTL-SNLCRGKKPQ 249
Query: 548 P-IIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS-NIPNLLSAGIISGLQSLA 605
P S A+P L +L + +DA A+ LS P I ++ I L L
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDT-ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL 308
Query: 606 VPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLL 665
+ +L + N+ + ++ G++ L +L + + +++A + +
Sbjct: 309 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368
Query: 666 CNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM 705
GN + Q V+ +IP LV + + + +A +
Sbjct: 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 408
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 83.9 bits (207), Expect = 5e-17
Identities = 40/262 (15%), Positives = 91/262 (34%), Gaps = 11/262 (4%)
Query: 449 EQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-NNRN 507
+ + ++ + + + L S + Q + + +
Sbjct: 67 SDEEDESSVSADQQFYSQLQQELPQMTQQLNS----DDMQEQLSATVKFRQILSREHRPP 122
Query: 508 KELMLAAGVIPLLEKMISNSNSHG----AATALYLNLSFLDDAKPIIGSSHAVPFLVELC 563
++++ AGV+P L + + + AA AL S ++ + AVP ++L
Sbjct: 123 IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL 182
Query: 564 KGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLN 622
+ + A+ AL N++ +L + + L P + L N
Sbjct: 183 YTGSVEVKE-QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 241
Query: 623 LAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVI 682
L + + + + LA ++ + + A + L +G ++ Q V+ +
Sbjct: 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP 301
Query: 683 PALVSISVNGSTRGRDKAQRLL 704
LV + + ST + A R +
Sbjct: 302 KRLVELLSHESTLVQTPALRAV 323
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 46/247 (18%), Positives = 90/247 (36%), Gaps = 21/247 (8%)
Query: 432 LNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQE 491
L L + + I L +EA L+ L ++ Q
Sbjct: 262 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE----STLVQT 317
Query: 492 IGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG---AATALYLNLSFLDDAKP 548
A+ N+ N+ ++++ AGV+P L ++S+ + A + + +
Sbjct: 318 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377
Query: 549 IIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPN----LLSAGIISGLQSL 604
+ ++ +P LV+L + E++ K +A A+ N S+ P+ L+S G I L L
Sbjct: 378 AVIDANLIPPLVKLLE-VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDL 436
Query: 605 AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL-F 663
D E +L L N+ +E + + + IE+ + +
Sbjct: 437 LEIADNRIIEVTLDALENILKMGEADKEARGLN--------INENADFIEKAGGMEKIFN 488
Query: 664 LLCNGNE 670
N N+
Sbjct: 489 CQQNEND 495
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 93.9 bits (233), Expect = 3e-20
Identities = 48/283 (16%), Positives = 106/283 (37%), Gaps = 14/283 (4%)
Query: 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 490
F++ L + + + + + E G + A + L S +++
Sbjct: 105 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP----HAHIS 160
Query: 491 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLN----LSFL--- 543
E AL N+A + + ++L++ G I L +++ + A N LS L
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220
Query: 544 -DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGL 601
+ A P+ +P LV L + D+ A+ L+ I ++ G++ L
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279
Query: 602 QSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSC 661
L + +L + N+ + + G ++ ++L + Q++A
Sbjct: 280 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 339
Query: 662 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704
+ + G + Q V+ G++P LV + + + +A +
Sbjct: 340 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI 382
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 5e-13
Identities = 59/326 (18%), Positives = 111/326 (34%), Gaps = 20/326 (6%)
Query: 384 RSCKLKEMKVVPLEVSGTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQ 443
+ K + + ++ ++ DI + + S +D + +N NL
Sbjct: 22 AAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWS-------VEDIVKGINS-NNLES 73
Query: 444 KCNIVEQIR-LLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 502
+ + R LL ++ + G + + FL S Q A AL N+A
Sbjct: 74 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG---KTDCSPIQFESAWALTNIAS 130
Query: 503 NNNRNKELMLAAGVIPLLEKMISNSNSHG---AATALYLNLSFLDDAKPIIGSSHAVPFL 559
+ + ++ G IP ++++ ++H A AL + ++ A+ L
Sbjct: 131 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPL 190
Query: 560 VELCKGKTEHQCKLDALH-ALYNLSTIPSNIPNL----LSAGIISGLQSLAVPGDPMWTE 614
+ L L + LS + N I+ L L DP
Sbjct: 191 LALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 615 KSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQ 674
S + L + EM G+V L +L EL A+ + + G ++ Q
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 310
Query: 675 MVLQEGVIPALVSISVNGSTRGRDKA 700
V+ G + S+ N T + +A
Sbjct: 311 KVIDAGALAVFPSLLTNPKTNIQKEA 336
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 1e-12
Identities = 39/290 (13%), Positives = 98/290 (33%), Gaps = 24/290 (8%)
Query: 432 LNVLNEGENLGQK----CNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNS 487
L +L + N+ + L ++ A + L+R L +
Sbjct: 191 LALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH----NDP 246
Query: 488 YAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSH---GAATALYLNLSFLD 544
A+ L N E+++ GV+P L K++ + A A+ ++ D
Sbjct: 247 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306
Query: 545 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQS 603
+ + + A+ L + + +A + N++ I +++ G++ L
Sbjct: 307 EQTQKVIDAGALAVFPSLLTNPKTN-IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365
Query: 604 LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST---PGLVSGLATVLDTGELIEQEQAVS 660
+ D +++ + N + G E G++ L +L + + +
Sbjct: 366 VLSKADFKTQKEAAWAITNYTSG--GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILD 423
Query: 661 CLFLLCN------GNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704
+ + EK M+ + G + + ++ + + + L+
Sbjct: 424 AISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 | Back alignment and structure |
|---|
Score = 89.8 bits (222), Expect = 1e-18
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 279 PPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYC 337
P+E P+ +M DPVI+ S +R I+ L ST P + L +TPN
Sbjct: 888 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLL-SDSTDPFNRMPLKLEDVTPNEE 946
Query: 338 VKGLIASWCE 347
++ I + +
Sbjct: 947 LRQKILCFKK 956
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 3e-18
Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 17/178 (9%)
Query: 175 SRAALTERRALKKLIERARVEEDKRKESIVAYLLHLMRKYSKLFRSEMIDDNDSQGSTPC 234
A ++ IE R+ ++ S + + +I + C
Sbjct: 114 PSALRIAKKKRWNSIEERRIHQESELHSYL---------------TRLIAAERERELEEC 158
Query: 235 SPTIQCSFEDGVHNGNEHAFDRQLSKLCSF--NFRPNNRRSGQMPLPPEELRCPISLQLM 292
+ +DG + + + K + + P+ L IS +LM
Sbjct: 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELM 218
Query: 293 YDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNG 350
+P I SG TY+R IE+ L P T+ L L PN +K +I ++ NG
Sbjct: 219 REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG 276
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 6e-16
Identities = 36/203 (17%), Positives = 85/203 (41%), Gaps = 7/203 (3%)
Query: 507 NKELMLAAGVIPLLEKMISNSNSH---GAATALYLNLSFL-DDAKPIIGSSHAVPFLVEL 562
+ +P + + +++ + A L ++ ++ + + A+P LV+L
Sbjct: 4 SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLS-QIASGGNEQIQAVIDAGALPALVQL 62
Query: 563 CKGKTEHQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLL 621
E + +AL AL N+++ I ++ AG + L L + +++L L
Sbjct: 63 LSSPNEQILQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 622 NLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGV 681
N+A+ + + G + L +L + ++A+ L + +G + Q V + G
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA 181
Query: 682 IPALVSISVNGSTRGRDKAQRLL 704
+ L + + + + + +AQ L
Sbjct: 182 LEKLEQLQSHENEKIQKEAQEAL 204
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 1e-15
Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 11/180 (6%)
Query: 451 IRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL 510
+ + E G + AL++ L S N + AL N+A N +
Sbjct: 36 LSQIASGGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQA 91
Query: 511 MLAAGVIPLLEKMISNSNSHG---AATALYLNLSFLDDA-KPIIGSSHAVPFLVELCKGK 566
++ AG +P L +++S+ N A AL N++ + + + A+P LV+L
Sbjct: 92 VIDAGALPALVQLLSSPNEQILQEALWAL-SNIASGGNEQIQAVIDAGALPALVQLLSSP 150
Query: 567 TEHQCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625
E Q +AL AL N+++ + AG + L+ L + +++ L L +
Sbjct: 151 NE-QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 78.3 bits (192), Expect = 2e-15
Identities = 40/234 (17%), Positives = 81/234 (34%), Gaps = 24/234 (10%)
Query: 473 ALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--- 529
+++L S ++ Q IGA + + + K+ + G I L ++ + N
Sbjct: 6 KAVQYLSS----QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61
Query: 530 HGAATALYLNLSFLDDA-KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSN 588
AA AL NL F K + + V L + + + L+NLS+
Sbjct: 62 QAAAGAL-RNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120
Query: 589 IPNLLSAGIISGLQSLAVP---------------GDPMWTEKSLAVLLNLAASAAGKEEM 633
L++ + + +P DP + L NL+++ AG++ M
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180
Query: 634 NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVS 687
+ GL+ L + + S +C + ++ + +
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 9e-09
Identities = 35/296 (11%), Positives = 83/296 (28%), Gaps = 24/296 (8%)
Query: 433 NVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLE--SAVCERNSYAQ 490
N+ E + N +R L D + +G + +L+ +++ A + +
Sbjct: 149 NMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSV 208
Query: 491 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKM-----------ISNSNSHGAATALYLN 539
E L NL+ + S+ +
Sbjct: 209 ENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE 268
Query: 540 LSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPN------LL 593
+ S A+ + L + AL NL+ + + L
Sbjct: 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328
Query: 594 SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEM--NSTPGLVSGLATVLDTGE 651
+ + L G+ ++L N++ M P + L +
Sbjct: 329 KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTS 388
Query: 652 LIE--QEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGST-RGRDKAQRLL 704
E A + L + + ++ ++++ + ++ + + A+ LL
Sbjct: 389 NSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLL 444
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 2e-05
Identities = 19/163 (11%), Positives = 49/163 (30%), Gaps = 10/163 (6%)
Query: 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVAL-LRFLESAVCERNSYA 489
+LN++ + + ++ L + L + + NS
Sbjct: 288 YLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDV 347
Query: 490 QEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSH--------GAATALYLNLS 541
GA L N++ + +M + + S++ + A + ++
Sbjct: 348 VRSGASLLSNMSRHP-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA 406
Query: 542 FLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 584
SS + ++ LC+ + A L ++ +
Sbjct: 407 SQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 5e-15
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 9/89 (10%)
Query: 280 PEELRCPISLQLMYDPVIIAS-GQTYERICIEKWLSDGHS-----TCPKT---QQKLPHL 330
CPI+ + M PV G TYE I + + CP+ +
Sbjct: 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64
Query: 331 CLTPNYCVKGLIASWCEMNGVSVPDSPPD 359
L + ++ I + + P
Sbjct: 65 DLIQDEALRRAIENHNKKRHRHSESGPSS 93
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 4e-14
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 38/232 (16%)
Query: 471 VVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSH 530
V++L + + R S A A + + + ++ + I L +++ N
Sbjct: 13 AVSMLEA-DHMLPSRISAA----ATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNED 67
Query: 531 ---GAATALYLNLSFLDDA-KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP 586
AL NL F D+ K + + VP L+++ K + + K L+NLS+
Sbjct: 68 VQRAVCGAL-RNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126
Query: 587 SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATV 646
+++ +++ +++ +P W E L
Sbjct: 127 KLKNLMITEALLTLTENIIIPF-SGWPEGDYPKANGLLDFDI------------------ 167
Query: 647 LDTGELIEQEQAVSCLFLLC-NGNEKCCQMVLQEGVIPALVSISVNGSTRGR 697
CL + G + M +G+I +LV +
Sbjct: 168 --------FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQ 211
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 4e-12
Identities = 44/234 (18%), Positives = 72/234 (30%), Gaps = 41/234 (17%)
Query: 443 QKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV 502
+ I+ EAR ++ LL+ L+ +N Q AL NL
Sbjct: 26 RISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV----QNEDVQRAVCGALRNLVF 81
Query: 503 NNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFL 559
+N NK + +P L +++ + T L NLS D K ++ + A+ L
Sbjct: 82 EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLM-ITEALLTL 140
Query: 560 VELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAV 619
E + S P + + +
Sbjct: 141 TENI---------------IIPFSGWPEGDYPKANGLLDFDIFYNVT-----------GC 174
Query: 620 LLNL-AASAAGKEEMNSTPGLVSGLATVLDTGELIEQ------EQAVSCLFLLC 666
L N+ +A A G++ M GL+ L + Q E V L L
Sbjct: 175 LRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 2e-13
Identities = 111/663 (16%), Positives = 209/663 (31%), Gaps = 166/663 (25%)
Query: 30 YCKILSVFPSLEASRPRSKSGIQALCSLHIALEKAKNILHHCSECSKLYLAITGDS-VLL 88
Y ILSVF +A + + + K+IL E + ++ S L
Sbjct: 18 YKDILSVF--EDAF-------VDNFDCKDV-QDMPKSILSK-EEIDHIIMSKDAVSGTLR 66
Query: 89 KFEKARSALAESLRR-VEDIVPQSIGCQILEIVNELETIAFSLDPSEKQVGDDIIALLQQ 147
F S E +++ VE+++ + + I E PS + + Q+
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE------QRQPS----MMTRMYIEQR 116
Query: 148 GRKFNDSNDNNELESFHQAATRLGITSSRAALTERRALKKLIERARVEEDKRKESIVAYL 207
R +ND+ Q + ++ + L R+AL +L R V L
Sbjct: 117 DRLYNDN----------QVFAKYNVSRLQPYLKLRQALLEL----------RPAKNV--L 154
Query: 208 LHLMR---KYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVH--N-GNEHAFD---RQL 258
+ + K + + ++ +QC + + N N ++ + L
Sbjct: 155 IDGVLGSGK-TWV-ALDVCLSYK----------VQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 259 SKLC---SFNFRPNNRRSGQMPLPPEELRC-----------PISLQLMYDPVIIASGQTY 304
KL N+ + S + L ++ L L+ V + + +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNV--QNAKAW 259
Query: 305 E------RICI---EKWLSDGHSTCPKTQQKLPHLC--LTPNYCVKGLIASWCEMNGVSV 353
+I + K ++D S T L H LTP+ VK L+ + +
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDC---RP 315
Query: 354 PDSPPDSLDLNYWRLALSEESTNSKSNEIVRSCKLKEMKVVPLEVSGTIEESEYNDIENI 413
D P + L N RL++ ES + + K + L + IE S + +
Sbjct: 316 QDLPREVLTTNPRRLSIIAES---IRDGLATWDNWKHVNCDKL--TTIIESS----LNVL 366
Query: 414 YAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQ-IRLLLKDDEEARVFTGANGFVV 472
E + + L+V + I + L+ D ++ V N
Sbjct: 367 EPAEYR------KMFDR-LSVFPPSAH------IPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 473 ALLRFLESAVCERNSYAQEIGAMAL-FNLAVNNNRNKEL---MLAA----------GVIP 518
L E+ I ++ L V L ++ +IP
Sbjct: 414 YSL-------VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 519 LLE------------KMISNSNSHGAATALYLNLSFLD-----DAKPIIGSSHAVPFLVE 561
K I + ++L+ FL+ D+ S + L +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 562 LCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISG----LQ-SLAVPGDPMWTEKS 616
L K + C D + ++ I +P + I S L+ +L + ++ E
Sbjct: 527 LKFYK-PYICDNDPKYERL-VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Query: 617 LAV 619
V
Sbjct: 585 KQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 2e-12
Identities = 81/521 (15%), Positives = 158/521 (30%), Gaps = 136/521 (26%)
Query: 3 IAEVEENLFAASDAK---LHGDM--CKK--LSALYC---KILSVFPS----LEASRPRSK 48
++ + L AK + G + K ++ C K+ L S
Sbjct: 137 YLKLRQALLELRPAKNVLIDG-VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 49 SGI----QALCSLHIALEKAKNILHHCSECSKLYLAITGDSVLLKFEKARSALAESLRRV 104
+ Q L I H + +++ LLK + + L L V
Sbjct: 196 ETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNV 253
Query: 105 EDIVPQ-----SIGCQILEIVNELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNE 159
++ + ++ C+IL L T KQV D + A
Sbjct: 254 QN--AKAWNAFNLSCKIL-----LTT-------RFKQVTDFLSA---------------- 283
Query: 160 LESFHQAATRLGITSSRAALTERRALKKLIERARVEEDK-RKE---------SIVAYLLH 209
T + + LT L++ +E SI+A +
Sbjct: 284 -----ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 210 LMRKYSKLFRSEMIDDNDSQGSTPCSPTIQCSFEDGVHNGNEHAFDRQLSKLCSFNFRPN 269
++ D + I+ S V E+ R++ S F P+
Sbjct: 339 DGLATWDNWKHVNCDKLTT--------IIESSLN--VLEPAEY---RKMFDRLSV-FPPS 384
Query: 270 NRRSGQMPLPPEELRCPISLQLM------YDPVIIASGQTYERICIEKWLSDGHSTCPKT 323
+P L L+ D +++ + + ++ +EK + + P
Sbjct: 385 ------AHIPTI------LLSLIWFDVIKSDVMVVVN-KLHKYSLVEKQPKESTISIPSI 431
Query: 324 QQKLPHLCLTPNYCV--KGLIASWCEMNGVSVPDSPPDSLDLNYWRLALS---EESTNSK 378
+L N + ++ + D P LD Y+ + + + +
Sbjct: 432 YLEL--KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-QYFYSHIGHHLKNIEHPE 488
Query: 379 SNEIVRSCKLK----EMKVVPLEVSGTIEESEYNDIENI-----YAQEDESGNNVFER-- 427
+ R L E K+ + S N ++ + Y +++ +ER
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND---PKYERLV 545
Query: 428 --YQDFLNVLNEGENL--GQKCNIVEQIRLLLKDD---EEA 461
DFL ENL + +++ +I L+ +D+ EEA
Sbjct: 546 NAILDFL--PKIEENLICSKYTDLL-RIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 8e-10
Identities = 78/528 (14%), Positives = 155/528 (29%), Gaps = 179/528 (33%)
Query: 131 DPSEKQVG-DDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALTERRALKKLI 189
+ E Q DI+++ + F D+ D +++ ++ L++ ++
Sbjct: 10 ETGEHQYQYKDILSVFED--AFVDNFDCKDVQDM-----------PKSILSKEEIDHIIM 56
Query: 190 ERARVE---------EDKRKESIVAYLLHLMRK-YSKLFRSEMIDDNDSQGSTPCSPTIQ 239
+ V K++E + ++ ++R Y F I Q S I+
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK--FLMSPIKTEQRQPSMMTRMYIE 114
Query: 240 CSFEDGVHNGNEHAFDRQLSKLCSFNFRP---NNRRSGQMPLPPEELRCPISLQLMYDPV 296
D ++N N+ +S R R + L P + + + +
Sbjct: 115 Q--RDRLYNDNQVFAKYNVS-------RLQPYLKLRQALLELRPAKN---VLIDGV---- 158
Query: 297 IIASGQT---------YERICIEK----WLSDGHSTCPKT----QQKLPHLCLTPNYCVK 339
+ SG+T Y+ C WL+ + P+T QKL + + PN+
Sbjct: 159 -LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ-IDPNWT-- 214
Query: 340 GLIASWCEMNGVSVPDSPPDSLDLNYWRLALSEESTNSKSNEIVRSCKLKEMKVVPLEVS 399
S D + L S ++ +++S + +V L V
Sbjct: 215 ------------SRSDHSS--------NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 400 GTIEESEYNDIENIYAQEDESGNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLL--KD 457
+ + N F + C ++LL +
Sbjct: 255 ---------NAKAW---------NAF----NL------------SC------KILLTTRF 274
Query: 458 DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL-MLAAGV 516
+ + A ++L + +L ++ R ++L
Sbjct: 275 KQVTDFLSAATTTHISL-DHHSMTLTPDEV-------KSLLLKYLDC-RPQDLPREVLTT 325
Query: 517 IPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDAL 576
P +I+ S G AT D II SS L+ L
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-------------------LNVL 366
Query: 577 H-----ALY-NLSTIP--SNIPNLLSAGIISGLQSLAVPGDPMWTEKS 616
++ LS P ++IP L++ +W +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIP----------TILLSL----IWFDVI 400
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 2e-13
Identities = 33/274 (12%), Positives = 85/274 (31%), Gaps = 15/274 (5%)
Query: 434 VLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIG 493
++ G++ + + + L D E + AL+ N
Sbjct: 386 LIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGG----NQSCLYGV 441
Query: 494 AMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSS 553
NL + + +P + ++ + H ++ F++ ++ +
Sbjct: 442 VTTFVNLCNAYEKQEM-------LPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE 494
Query: 554 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWT 613
L L K ++ + L + + ++ G + L +A+ G
Sbjct: 495 GITTALCALAKTESH-NSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGK 553
Query: 614 EKSLAVLLNLAASAAGKEEMNSTPGL--VSGLATVLDTG-ELIEQEQAVSCLFLLCNGNE 670
+ L + + + + L + L +L +E +++ L L + NE
Sbjct: 554 RHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE 613
Query: 671 KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704
Q +++E + + + A + L
Sbjct: 614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCL 647
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 8e-07
Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 10/200 (5%)
Query: 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQ 490
LN+L + + + + L +E R V + +L + Y
Sbjct: 585 LLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME----DHLYLT 640
Query: 491 EIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSN--SHGAATALYLNLSFLDD--A 546
A L NL ++ + K + L + + + + A ++ +
Sbjct: 641 RAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC 700
Query: 547 KPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL-STIPSNIPNLLSAGIISGLQSLA 605
+ I+ + + L L + + + + N+ + L I+ L L
Sbjct: 701 EKILAIASWLDILHTLIANPSP-AVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLG 759
Query: 606 VPGDPMWTEKSLAVLLNLAA 625
D + LAA
Sbjct: 760 QLPDDTRAKAREVATQCLAA 779
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 70.8 bits (172), Expect = 8e-13
Identities = 49/279 (17%), Positives = 88/279 (31%), Gaps = 31/279 (11%)
Query: 453 LLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELML 512
L + ++ L R + A L +L N++ K +
Sbjct: 32 LDSLRKGGPPPPNWRQPELPEVIAMLGF----RLDAVKSNAAAYLQHLCYRNDKVKTDVR 87
Query: 513 AAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKGKT 567
IP+L ++ + GA AL N+SF D K I + VP LV L +
Sbjct: 88 KLKGIPVLVGLLDHPKKEVHLGACGAL-KNISFGRDQDNKIAIKNCDGVPALVRLLRKAR 146
Query: 568 EHQCKLDALHALYNLSTIPSNIPNLLSAGII----------SGLQSLAVPGDPMWTEKSL 617
+ L+NLS+ S ++ + SG + +
Sbjct: 147 DMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206
Query: 618 AVLLNLA--------ASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS---CLFLLC 666
+VL N A + + ++ GLV L ++ + + C+ LL
Sbjct: 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLR 266
Query: 667 NGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM 705
N + + + + Q N + + LL
Sbjct: 267 NLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLF 305
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 1e-09
Identities = 42/274 (15%), Positives = 88/274 (32%), Gaps = 26/274 (9%)
Query: 445 CNIVEQIRLLLKDDEEAR-VFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 503
N +R + + EAR +G V AL+ +++ + +++S ++ + ++
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269
Query: 504 NNRNKELMLAAGVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELC 563
++E+ A + +N+ + ++ V + L
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSP------------ARGYELLFQPEVVRIYISLL 317
Query: 564 KGKTEHQCKLDALHALYNLSTIPSNIPN-----LLSAGIISGLQSLAVPGDPMWTEKSLA 618
K + A+ NL L +S + L + +
Sbjct: 318 KESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASG 377
Query: 619 VLLNLAASAAGKEEMNST--PGLV----SGLATVLDTGELIEQEQAVSCLFLLCNGNEKC 672
L NLA A KE + P LV G ++ + + N +
Sbjct: 378 ALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA 437
Query: 673 CQMVLQEGVIPALVSISVNG--STRGRDKAQRLL 704
+ + + I LV I+ +G S + A +L
Sbjct: 438 AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVL 471
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-11
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 282 ELRCPISLQLMYDPVI-IASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP 334
+ C IS ++ PV+ S +E+ +E+++ D P T + L +
Sbjct: 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVE 55
|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 | Back alignment and structure |
|---|
Score = 58.0 bits (139), Expect = 2e-09
Identities = 29/244 (11%), Positives = 71/244 (29%), Gaps = 11/244 (4%)
Query: 125 TIAFSLDPSEKQVGDDIIALLQQGRKFNDSNDNNELESFHQAATRLGITSSRAALTERRA 184
++ KQ+ + I L+ + ++ L +E +
Sbjct: 29 DLSNIYQQCYKQIDETINQLVDS-TSPSTIGIEEQVADITSTYKLL-----STYESESNS 82
Query: 185 LKKLIERARVEEDKRKESIVAYLLHLMRKY-SKLFRSEMIDDNDSQGSTPCSPTIQCSFE 243
+ I+ + + ++ L KY + + + + TP T+ + +
Sbjct: 83 FDEHIKDLKKNFKQSSDACPQIDLSTWDKYRTGELTAPKLSELYLNMPTPEPATMVNNTD 142
Query: 244 DGVHNGNEHAFDRQLSKLCSFNFRPNNRRSGQMPLPPEELRCPISLQLMYDPVIIAS-GQ 302
+ + P + Q+ EL CPI+ + P+I
Sbjct: 143 TLKILKVLPYIWNDPTCVIPDLQNPADEDDLQIEGGKIELTCPITCKPYEAPLISRKCNH 202
Query: 303 TYERICIEKWL-SDGHSTCPKT--QQKLPHLCLTPNYCVKGLIASWCEMNGVSVPDSPPD 359
++R I+ +L CP+ Q + + ++
Sbjct: 203 VFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKESQEQDKRSSQ 262
Query: 360 SLDL 363
++D+
Sbjct: 263 AIDV 266
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 8e-09
Identities = 29/190 (15%), Positives = 60/190 (31%), Gaps = 4/190 (2%)
Query: 496 ALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGS 552
L +L N + + +G+ L+ + + + AA + + + +
Sbjct: 63 LLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG 122
Query: 553 SHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPM 611
A+ L+ L ++ AL A+ L + + L S L
Sbjct: 123 LGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK 182
Query: 612 WTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEK 671
KS +L NL + + G+V L ++ T E + L L +
Sbjct: 183 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ 242
Query: 672 CCQMVLQEGV 681
+ + +
Sbjct: 243 GVRECREPEL 252
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 8e-09
Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 7/156 (4%)
Query: 432 LNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQE 491
+ E G + + I ++ + G + LLR L+ + +
Sbjct: 87 VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR---DACDTVRV 143
Query: 492 IGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKP 548
A+ L L +L + + +A L L + K
Sbjct: 144 KALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG 203
Query: 549 IIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 584
+ S V LV L + L AL +L T
Sbjct: 204 TLCSMGMVQQLVALVR-TEHSPFHEHVLGALCSLVT 238
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-08
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCV 338
+ CPI L + + V G + + CI K + D CP + L L P+
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74
Query: 339 KGLIAS---WCEMNG 350
K I S C G
Sbjct: 75 KREILSLMVKCPNEG 89
|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-07
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 280 PEELRCPISLQLMYDPVIIAS-GQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCV 338
E RC I ++ + D + + CI +WL++ + CP + L L
Sbjct: 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWA 79
Query: 339 KGLI 342
+ +
Sbjct: 80 EEVT 83
|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 3e-07
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 273 SGQMPLPPEELRCPISLQLMYDPVIIAS-GQTYERICIEKWLSD-GHSTCPKTQQKLP 328
SG+ P+EL C I +M D V+I G +Y CI L + TCP Q
Sbjct: 6 SGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 5e-07
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 280 PEELRCPISLQLMYDPVIIAS-GQTYERICIEK-WLSDGHSTCPKTQQKLPHL-CLTPNY 336
P+EL C I +M D V+I G +Y CI L TCP Q L N
Sbjct: 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANK 70
Query: 337 CVKGLI 342
++ +
Sbjct: 71 FLRQAV 76
|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-06
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 327
++ +C ++ P G + C+ LS C Q+ +
Sbjct: 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 60
|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-06
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWL--SDGHSTCPKTQQKLPHLCLTPNYCV 338
+ L CPI L+L+ +PV + + C+ K L G S CP + + L +
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRF 79
Query: 339 KGLI 342
L+
Sbjct: 80 SQLV 83
|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 2e-06
Identities = 18/66 (27%), Positives = 26/66 (39%)
Query: 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCV 338
+ CPI L + + V G + + CI K + D CP + L L P+
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74
Query: 339 KGLIAS 344
K I S
Sbjct: 75 KREILS 80
|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 2e-06
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL-PHLCLTPNYCVK 339
+ + C I ++ DPV + + RICI + L S CP + P +P
Sbjct: 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFL 81
Query: 340 GLIAS 344
++ S
Sbjct: 82 NILNS 86
|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-06
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 336
C I LQ PV + + +C++ G C +Q++P L
Sbjct: 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-RCALCRQEIPEDFLDSGP 68
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 3e-06
Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH-LCLTPNYCVK 339
E +C +L++ P+ + C+++ +CP + L + N ++
Sbjct: 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQ 110
Query: 340 GLI 342
++
Sbjct: 111 TVL 113
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 4e-06
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL-PHLCLTPNYCVK 339
+ C +L+Y PV + C+++ +CP + L + + PN ++
Sbjct: 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQ 136
Query: 340 GLI 342
L+
Sbjct: 137 TLL 139
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 4e-06
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 280 PEELRCPISLQLMYDPVIIAS-GQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCV 338
+ LRC I + +II Y +CI K+LS + CP + L N +
Sbjct: 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRIL 78
Query: 339 KGLIASW 345
L+ S
Sbjct: 79 DELVKSL 85
|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 1e-05
Identities = 9/43 (20%), Positives = 13/43 (30%)
Query: 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCP 321
+ C ++ P G Y C+ LS G C
Sbjct: 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCA 70
|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 1e-05
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 281 EELRCPISLQLMYDPVIIAS-GQTYERICIEKWLSDGHSTCPKTQQKL-PHLCLTPNYCV 338
EL CPI L ++ + + + CI L G+ CP ++KL L P+
Sbjct: 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNF 112
Query: 339 KGLIA 343
LI+
Sbjct: 113 DALIS 117
|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-05
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 270 NRRSGQMPLPPEELRCPISLQLMYDPVIIAS-GQTYERICIEKWLSDGHSTCPK 322
+ SG + + C I + D I T+ + CI + + CPK
Sbjct: 3 SGSSGNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPK 55
|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-05
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWL-----SDGHSTCPKTQQKLPHLCLTPN 335
EE+ CPI L+L+ +PV ++ R CI +DG CP + P L PN
Sbjct: 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPN 77
Query: 336 YCVKGLI 342
V ++
Sbjct: 78 LHVANIV 84
|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 5e-05
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 281 EELRCPISLQLMYDPVIIAS-GQTYERICIEKWLSDGHSTCP----KTQQKLPHLCLTPN 335
L C + D I ++ + CI ++L + CP + + P L + +
Sbjct: 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL-ETSKYCPICDVQVHKTRPLLNIRSD 72
Query: 336 YCVKGLI 342
++ ++
Sbjct: 73 KTLQDIV 79
|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 281 EELRCPISLQLMYDPVIIAS-GQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 339
+ LRC ++ +PV + + C+ + + CP L N +
Sbjct: 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLD 77
Query: 340 GLIASWCEM 348
+I ++
Sbjct: 78 SMIQLCSKL 86
|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 2e-04
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCP 321
E +C I ++++ +PV + T + C + + CP
Sbjct: 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCP 54
|
| >4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 2e-04
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCP--KTQQKLPHLCLTPNYCV 338
EL+C I + + V + ++ CI +W+ CP + K L + C+
Sbjct: 63 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWM-KRKIECPICRKDIKSKTYSLVLDNCI 121
Query: 339 KGLIASWCE 347
++ +
Sbjct: 122 NKMVNNLSS 130
|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 2e-04
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWL--SDGHSTCP 321
EE+ CPI L ++ PV I G + CI + S G CP
Sbjct: 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCP 61
|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 3e-04
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWL--SDGHSTCP 321
EE+ CPI L ++ PV I G + CI + S G CP
Sbjct: 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCP 61
|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 4e-04
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSD------GHSTCPKTQQKLPHLCLTP 334
EE+ CPI L+L+ +P+ + G + R CI + G S+CP L
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70
Query: 335 NYCVKGLI 342
N + ++
Sbjct: 71 NQHLANIV 78
|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58 | Back alignment and structure |
|---|
Score = 37.7 bits (88), Expect = 6e-04
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCP 321
E C + L+ + +PVII G + + CI +W D CP
Sbjct: 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCP 56
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 775 | |||
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.97 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.96 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.96 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.96 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.95 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.95 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.95 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.94 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.94 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.94 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.94 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.94 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.93 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.93 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.93 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.93 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.93 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.92 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.91 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.91 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.91 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.91 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.91 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.9 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.9 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.89 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.89 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.88 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.88 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.87 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.86 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.86 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.85 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.84 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.84 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 99.83 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 99.83 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 99.82 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 99.8 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 99.76 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.76 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.76 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.73 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.73 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 99.7 | |
| 3m62_A | 968 | Ubiquitin conjugation factor E4; armadillo-like re | 99.59 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 99.59 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 99.56 | |
| 3htk_C | 267 | E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- | 99.53 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 99.42 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 99.39 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.37 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 99.31 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 99.3 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 99.28 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 99.27 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 99.26 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 99.25 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 99.25 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 99.24 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 99.24 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 99.24 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 99.24 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 99.22 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 99.22 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 99.19 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 99.17 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.15 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 99.15 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 99.15 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.09 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 99.09 | |
| 3hcs_A | 170 | TNF receptor-associated factor 6; cross-brace, bet | 99.07 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 99.06 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 99.06 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 99.05 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.03 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.03 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.02 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.0 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 99.0 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 98.98 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 98.97 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 98.94 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 98.91 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 98.88 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 98.87 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 98.85 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.84 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 98.66 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.65 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.65 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 98.65 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.65 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.64 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 98.63 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 98.63 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 98.62 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 98.57 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 98.55 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 98.55 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.54 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 98.52 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 98.51 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.5 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.49 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.49 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.48 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 98.44 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 98.4 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.37 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.35 | |
| 2ecg_A | 75 | Baculoviral IAP repeat-containing protein 4; BIRC4 | 98.27 | |
| 1wim_A | 94 | KIAA0161 protein; ring finger domain, UBCM4-intera | 98.21 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 98.17 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.11 | |
| 2vje_A | 64 | E3 ubiquitin-protein ligase MDM2; proto-oncogene, | 98.07 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.07 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.01 | |
| 2vje_B | 63 | MDM4 protein; proto-oncogene, phosphorylation, alt | 98.01 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 97.96 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 97.95 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 97.94 | |
| 2ea5_A | 68 | Cell growth regulator with ring finger domain prot | 97.93 | |
| 2yho_A | 79 | E3 ubiquitin-protein ligase mylip; ligase, E2 liga | 97.93 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.93 | |
| 3t6p_A | 345 | Baculoviral IAP repeat-containing protein 2; ring, | 97.93 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.92 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 97.91 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 97.9 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.86 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.84 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 97.82 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.7 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.69 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.64 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.59 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 97.49 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.49 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.42 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.32 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.17 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.11 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 96.72 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.72 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.67 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.6 | |
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 96.59 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 96.46 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 96.39 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 96.36 | |
| 1vyx_A | 60 | ORF K3, K3RING; zinc-binding protein, ring domain, | 96.28 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.11 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 96.1 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.01 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 95.97 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.56 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 95.2 | |
| 3k1l_B | 381 | Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A | 95.03 | |
| 3vk6_A | 101 | E3 ubiquitin-protein ligase hakai; HYB, phosphotyr | 94.72 | |
| 3i2d_A | 371 | E3 SUMO-protein ligase SIZ1; signal transduction, | 94.4 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 93.16 | |
| 4fo9_A | 360 | E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom | 93.13 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 92.75 | |
| 2jun_A | 101 | Midline-1; B-BOX, TRIM, ring finger, alternative s | 92.7 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 91.91 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 91.37 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 90.7 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 90.35 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 90.26 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 89.68 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 89.57 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 88.71 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 87.16 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 85.85 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 85.79 | |
| 3nw0_A | 238 | Non-structural maintenance of chromosomes element | 85.69 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 84.38 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 84.22 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 83.79 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 83.01 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 81.82 |
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=285.69 Aligned_cols=269 Identities=19% Similarity=0.181 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhc-------cCCCHHHHHHHHHHHHHhhccCCchhHHHHh-
Q 004073 442 GQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-------CERNSYAQEIGAMALFNLAVNNNRNKELMLA- 513 (775)
Q Consensus 442 ~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~-------~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~- 513 (775)
+.+..|++.|.+++.+ +++|..|++.|++++|+.+|.... +..++.+|+.|+++|.||+.+++.+|..+..
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4566899999999987 799999999999999999996421 1124679999999999999766668887764
Q ss_pred hCcHHHHHHHhccCCh--HHHHHHHHhccccc--CCccccccccCchHHHHHhh-cCCCCHHHHHHHHHHHHHhcC-CCC
Q 004073 514 AGVIPLLEKMISNSNS--HGAATALYLNLSFL--DDAKPIIGSSHAVPFLVELC-KGKTEHQCKLDALHALYNLST-IPS 587 (775)
Q Consensus 514 ~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~--~~~k~~I~~~g~i~~LV~LL-~~~~~~~~k~~Al~aL~nLs~-~~~ 587 (775)
.|+||.|+.+|++++. ++.|+++|.||+.. +++|..|.+.|+||+||++| +++ +..+++.|+.+|+||+. +++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChh
Confidence 5679999999998875 58899999999985 46899999999999999975 566 89999999999999998 568
Q ss_pred ChHHHH-HcCcHHHHHHhccCCCh----HHHHHHHHHHHHHhC----CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHH
Q 004073 588 NIPNLL-SAGIISGLQSLAVPGDP----MWTEKSLAVLLNLAA----SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQA 658 (775)
Q Consensus 588 nk~~iv-~aG~V~~Lv~LL~~~~~----~i~e~al~~L~nLa~----~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~A 658 (775)
|+..++ .+|+|+.|+.+|.+++. .+++.|+++|.||+. +++++..+.+. |+|+.|+.+|.+++..++++|
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN-NCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT-THHHHHHHHTTCSCHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc-CCHHHHHHHHcCCChHHHHHH
Confidence 999998 69999999999986543 588999999999995 78888888874 999999999999999999999
Q ss_pred HHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccCC
Q 004073 659 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 659 v~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
+++|++|+.+++++++.+.+.|+++.|+.|+.++++++++.|...|++|....+.
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999988889999999999999999999999999999999999999976444
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=286.11 Aligned_cols=266 Identities=20% Similarity=0.186 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhc-------cCCCHHHHHHHHHHHHHhhccCCchhHHHHh-h
Q 004073 443 QKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-------CERNSYAQEIGAMALFNLAVNNNRNKELMLA-A 514 (775)
Q Consensus 443 ~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~-------~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~-~ 514 (775)
.+++|++.|.+++.+ +++|..|.+.|++++|+.+|.... +..++.+|++|+++|.||+.+++.+|..+.. .
T Consensus 164 ~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~ 242 (458)
T 3nmz_A 164 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 242 (458)
T ss_dssp TTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcC
Confidence 355899999999765 899999999999999999996421 1134678999999999999766667777754 5
Q ss_pred CcHHHHHHHhccCCh--HHHHHHHHhccccc--CCccccccccCchHHHHHhh-cCCCCHHHHHHHHHHHHHhcC-CCCC
Q 004073 515 GVIPLLEKMISNSNS--HGAATALYLNLSFL--DDAKPIIGSSHAVPFLVELC-KGKTEHQCKLDALHALYNLST-IPSN 588 (775)
Q Consensus 515 G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~--~~~k~~I~~~g~i~~LV~LL-~~~~~~~~k~~Al~aL~nLs~-~~~n 588 (775)
|+||.|+.+|.+++. ++.|+++|.||+.. +++|..|.+.|+||+||++| .++ +..+++.|+.+|+||+. +++|
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~-~~~v~~~A~~aL~nLs~~~~~n 321 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTEN 321 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHHHCHHH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHccCCHHH
Confidence 679999999998875 58899999999985 46889999999999999975 556 89999999999999998 7789
Q ss_pred hHHHH-HcCcHHHHHHhccCCCh----HHHHHHHHHHHHHhC----CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHH
Q 004073 589 IPNLL-SAGIISGLQSLAVPGDP----MWTEKSLAVLLNLAA----SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 659 (775)
Q Consensus 589 k~~iv-~aG~V~~Lv~LL~~~~~----~i~e~al~~L~nLa~----~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av 659 (775)
+..++ .+|+|+.|+.+|..++. .+++.|+++|.||+. +++++..+.+. |+|+.|+.+|.+++..++++|+
T Consensus 322 k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~-G~i~~Lv~LL~~~~~~v~~~A~ 400 (458)
T 3nmz_A 322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN-NCLQTLLQHLKSHSLTIVSNAC 400 (458)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHSSCSCHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc-ccHHHHHHHHcCCChHHHHHHH
Confidence 99998 69999999999976543 488999999999995 78888888875 9999999999999999999999
Q ss_pred HHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 660 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
++|++|+.++++++..+.+.|+++.|+.|+.+++.++++.|...|++|....
T Consensus 401 ~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 401 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999888899999999999999999999999999999999999998764
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-29 Score=284.64 Aligned_cols=278 Identities=20% Similarity=0.183 Sum_probs=237.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.++.++..|.++ +.++|..|+..|++++.+++.++..+++.|+||.||++|++ .++.+|+.|+++|.||+.++++
T Consensus 3 ~l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s----~~~~~~~~A~~aL~nLa~~~~~ 77 (457)
T 1xm9_A 3 TIPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS----PNQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp CHHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHH
T ss_pred CHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHH
Confidence 467889999998 89999999999999999888899999999999999999998 7899999999999999986689
Q ss_pred hhHHHHhhCcHHHHHHHhc-cCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhc--------CC-------CC
Q 004073 507 NKELMLAAGVIPLLEKMIS-NSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK--------GK-------TE 568 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~-s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~--------~~-------~~ 568 (775)
+|..|++.|++|+|+.+|. +++. ++.|+++|.||+..+++|..|.+ |++|+|+++|. ++ .+
T Consensus 78 ~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~ 156 (457)
T 1xm9_A 78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhccccc
Confidence 9999999999999999998 6664 58899999999999999999998 99999999993 22 14
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHc-CcHHHHHHhccC------CChHHHHHHHHHHHHHhCC---------------
Q 004073 569 HQCKLDALHALYNLSTIPSNIPNLLSA-GIISGLQSLAVP------GDPMWTEKSLAVLLNLAAS--------------- 626 (775)
Q Consensus 569 ~~~k~~Al~aL~nLs~~~~nk~~iv~a-G~V~~Lv~LL~~------~~~~i~e~al~~L~nLa~~--------------- 626 (775)
..+.++|+++|+|||.+++++..++++ |++++|+.+|.+ .+..+++.|+.+|.||+..
T Consensus 157 ~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~ 236 (457)
T 1xm9_A 157 PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence 566779999999999988899999998 999999999974 3456789999999999731
Q ss_pred ------------------------------------cccHHHHhhCCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCC
Q 004073 627 ------------------------------------AAGKEEMNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGN 669 (775)
Q Consensus 627 ------------------------------------~e~~~~i~~~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~ 669 (775)
+.+.+.+.. .|+++.|+.+|.. .++.++|.|+++|++||.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~ 315 (457)
T 1xm9_A 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH-SDAIRTYLNLMGKSKKDATLEACAGALQNLTASK 315 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCS
T ss_pred cccccccccccchhhccchhhhhccccCCccccccCchHHHHHhC-cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCc
Confidence 112223333 4778999999985 57999999999999999865
Q ss_pred hHh----HH-HHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 670 EKC----CQ-MVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 670 ~~~----~~-~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
... .+ .+.++|++|.|+.|+.+++.++++.|+++|++|....
T Consensus 316 ~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp SSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred CcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 322 13 3446899999999999999999999999999998743
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=281.40 Aligned_cols=280 Identities=18% Similarity=0.162 Sum_probs=237.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc-C
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-N 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~ 504 (775)
..+..||..|.++ +.++|..|+..|++++..++++|..|++.|+||+||++|.+ .+..+|+.|+++|.||+.+ +
T Consensus 48 ~~i~~LV~~L~s~-~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s----~~~~vq~~Aa~AL~nLa~~~~ 122 (584)
T 3l6x_A 48 PELPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH----PKKEVHLGACGALKNISFGRD 122 (584)
T ss_dssp CCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC----SSHHHHHHHHHHHHHHTSSSC
T ss_pred ccHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC----CCHHHHHHHHHHHHHHHccCC
Confidence 4688999999998 89999999999999999999999999999999999999998 7999999999999999874 5
Q ss_pred CchhHHHHhhCcHHHHHHHhccC-Ch--HHHHHHHHhcccccCCccccccccCchHHHHHhhc-----------------
Q 004073 505 NRNKELMLAAGVIPLLEKMISNS-NS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK----------------- 564 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~-~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~----------------- 564 (775)
++||..|++.|+||+|+.+|.++ +. ++.|+++|++||.++++|..|.. +++|+||++|.
T Consensus 123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~ 201 (584)
T 3l6x_A 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPR 201 (584)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccc
Confidence 78999999999999999999974 33 58899999999999999999984 67999999872
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCC-ChHHHHH-cCcHHHHHHhccC------CChHHHHHHHHHHHHHhCCcc--------
Q 004073 565 GKTEHQCKLDALHALYNLSTIPS-NIPNLLS-AGIISGLQSLAVP------GDPMWTEKSLAVLLNLAASAA-------- 628 (775)
Q Consensus 565 ~~~~~~~k~~Al~aL~nLs~~~~-nk~~iv~-aG~V~~Lv~LL~~------~~~~i~e~al~~L~nLa~~~e-------- 628 (775)
+..+..+++.|+++|+||+.+.+ +|..+++ .|+|+.||.+|.+ .+...++.|+++|.||+..-+
T Consensus 202 ~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~ 281 (584)
T 3l6x_A 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281 (584)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred ccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence 11157899999999999998775 5888988 4677899998863 456788999999999987521
Q ss_pred ------------------cHHHHhhCCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCh----HhHHHHHHCCCHHHH
Q 004073 629 ------------------GKEEMNSTPGLVSGLATVLD-TGELIEQEQAVSCLFLLCNGNE----KCCQMVLQEGVIPAL 685 (775)
Q Consensus 629 ------------------~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~----~~~~~v~~~G~i~~L 685 (775)
|...+.. .++|+.|+.+|. ..++.++|+|+++|++||.++. ..+..+.++|+++.|
T Consensus 282 ~~~~~~~~~~~~~~~~~~Gve~L~~-~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~L 360 (584)
T 3l6x_A 282 YQEAAPNVANNTGTSPARGYELLFQ-PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI 360 (584)
T ss_dssp --------------CCCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHH
T ss_pred hhhhcccccccccccCchhHHHHhc-ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHH
Confidence 1111121 245778899996 5689999999999999998652 233455567899999
Q ss_pred HHhhhcCChHHHHHHHHHHHHhHhccC
Q 004073 686 VSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 686 v~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
+.|+.+++.++++.|..+|++|.....
T Consensus 361 v~LL~s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 361 ADLLTNEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCChh
Confidence 999999999999999999999997643
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=267.94 Aligned_cols=280 Identities=14% Similarity=0.138 Sum_probs=241.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhc-hhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLE-SAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~-s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
..+..|+..|.++ +.++|..|+++|++++.+++++|..|++.|+||.|+++|. + .+..+++.|+++|.||+.+
T Consensus 44 g~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~----~~~~~~~~a~~aL~nLa~~- 117 (457)
T 1xm9_A 44 GGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT----GNAEIQKQLTGLLWNLSST- 117 (457)
T ss_dssp THHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTS-
T ss_pred CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhC----CCHHHHHHHHHHHHHHhcC-
Confidence 4678889899888 9999999999999999998999999999999999999998 5 6899999999999999974
Q ss_pred CchhHHHHhhCcHHHHHHHhc--------cCCh--H--------HHHHHHHhcccccCCcccccccc-CchHHHHHhhcC
Q 004073 505 NRNKELMLAAGVIPLLEKMIS--------NSNS--H--------GAATALYLNLSFLDDAKPIIGSS-HAVPFLVELCKG 565 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~--------s~~~--~--------~~AaaaL~~Ls~~~~~k~~I~~~-g~i~~LV~LL~~ 565 (775)
+.+|..+++ |++|.|+.+|. ++.. + .+|+++|.||+..++++..+.+. |++++|+.+|.+
T Consensus 118 ~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 118 DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence 789999999 99999999993 2211 1 38999999999988888888886 999999988863
Q ss_pred C-------------------------------------------------------------------------------
Q 004073 566 K------------------------------------------------------------------------------- 566 (775)
Q Consensus 566 ~------------------------------------------------------------------------------- 566 (775)
+
T Consensus 197 ~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (457)
T 1xm9_A 197 CVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS 276 (457)
T ss_dssp HHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGG
T ss_pred hccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHH
Confidence 0
Q ss_pred -------------------CCHHHHHHHHHHHHHhcCCCCCh-----HHHH-HcCcHHHHHHhccCCChHHHHHHHHHHH
Q 004073 567 -------------------TEHQCKLDALHALYNLSTIPSNI-----PNLL-SAGIISGLQSLAVPGDPMWTEKSLAVLL 621 (775)
Q Consensus 567 -------------------~~~~~k~~Al~aL~nLs~~~~nk-----~~iv-~aG~V~~Lv~LL~~~~~~i~e~al~~L~ 621 (775)
.++..++.|+++|.||+...... ..++ ++|++|.|+++|.+++..++..|+++|.
T Consensus 277 ~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~ 356 (457)
T 1xm9_A 277 GWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS 356 (457)
T ss_dssp GGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHH
Confidence 13567778999999999866542 2344 5899999999999999999999999999
Q ss_pred HHhCCcccHHHHhhCCCcHHHHHHHhcCCC------HHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC-Ch
Q 004073 622 NLAASAAGKEEMNSTPGLVSGLATVLDTGE------LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG-ST 694 (775)
Q Consensus 622 nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s------~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g-~~ 694 (775)
||+.+++.+..|.. |+|+.|+++|..++ +++...++++|.++...++++...+.+.|++++|+.|+.++ ++
T Consensus 357 nls~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~ 434 (457)
T 1xm9_A 357 NMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP 434 (457)
T ss_dssp HHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCH
T ss_pred HHhcCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcH
Confidence 99999888877764 78999999999763 46888999999999988888999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhHhccCCC
Q 004073 695 RGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 695 ~~k~kA~~LL~~L~~~~~~~ 714 (775)
+++++|..+|.++..+.+-+
T Consensus 435 ~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 435 KAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHHHHHHHcchhhh
Confidence 99999999999998765543
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=265.35 Aligned_cols=278 Identities=16% Similarity=0.204 Sum_probs=247.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.++.||..|...++.++|..|+++|.+++..+++++..+++.|+||.|+.+|.+ .+..+++.|+++|.||+.+++.
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s----~~~~v~e~A~~aL~nLa~d~~~ 176 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS----PHAHISEQAVWALGNIAGDGSA 176 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCCHH
Confidence 567788888766478999999999999999999999999999999999999998 7999999999999999976677
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh-------HHHHHHHHhcccccCCccccccc-cCchHHHHHhhcCCCCHHHHHHHHHH
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS-------HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHA 578 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~-------~~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~a 578 (775)
++..+++.|++++|+.+|.+.+. ...++++|.+++........+.. .|++|.|+++|.++ +.+++..|+++
T Consensus 177 ~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~A~~a 255 (510)
T 3ul1_B 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWA 255 (510)
T ss_dssp HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 89999999999999999987653 35689999999987766655543 68999999999998 99999999999
Q ss_pred HHHhcCCCCCh-HHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCccc-HHHHhhCCCcHHHHHHHhcCCCHHHHH
Q 004073 579 LYNLSTIPSNI-PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG-KEEMNSTPGLVSGLATVLDTGELIEQE 656 (775)
Q Consensus 579 L~nLs~~~~nk-~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~-~~~i~~~~g~I~~Lv~lL~~~s~~~~e 656 (775)
|.+|+.+..++ ..+++.|+++.|+++|.+.+..++..++.+|.||+...+. +..+.. .|+++.|+.+|.+.++.+++
T Consensus 256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~v~~ 334 (510)
T 3ul1_B 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQK 334 (510)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGCC-CTTCSSHHHHH
T ss_pred HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhh-ccchHHHHHHhcCCCHHHHH
Confidence 99999877655 4556799999999999999999999999999999876554 445555 59999999999999999999
Q ss_pred HHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 657 QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 657 ~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
.|+++|.+|+.++......+.+.|+++.|+.++.+++..+|+.|++.|.++...
T Consensus 335 ~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 999999999999989999999999999999999999999999999999988754
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-26 Score=263.82 Aligned_cols=279 Identities=16% Similarity=0.197 Sum_probs=249.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..||..|...++.++|..|+++|.+++..+.+++..+++.|+||.|+.+|.+ .+..+++.|+++|.||+.+++
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s----~~~~v~e~A~~aL~nLa~~~~ 194 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS----PHAHISEQAVWALGNIAGAGS 194 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhccCH
Confidence 3577888888766578999999999999999999999999999999999999998 899999999999999997677
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh-------HHHHHHHHhcccccCCccccccc-cCchHHHHHhhcCCCCHHHHHHHHH
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS-------HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTEHQCKLDALH 577 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~-------~~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~ 577 (775)
.++..+++.|++++|+.+|..... ...++++|.+++.+......+.. .|++|.|+.+|.++ +++++.+|++
T Consensus 195 ~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~a~~ 273 (529)
T 3tpo_A 195 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCW 273 (529)
T ss_dssp HHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-CHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC-cHHHHHHHHH
Confidence 889999999999999999987553 35689999999988766555543 78999999999999 9999999999
Q ss_pred HHHHhcCCCCCh-HHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHHHhcCCCHHHH
Q 004073 578 ALYNLSTIPSNI-PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTGELIEQ 655 (775)
Q Consensus 578 aL~nLs~~~~nk-~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~~~s~~~~ 655 (775)
+|.+|+.+..++ ..++++|+++.|+.+|.+.+..++..++.+|.||+...+ .+..+.. .|+++.|+.+|.++++.++
T Consensus 274 aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~i~ 352 (529)
T 3tpo_A 274 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQ 352 (529)
T ss_dssp HHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGHHHHTTCSSHHHH
T ss_pred HHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhh-cccHHHHHHHHcCCCHHHH
Confidence 999999877654 456679999999999999999999999999999987654 4555665 5999999999999999999
Q ss_pred HHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 656 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 656 e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
+.|+++|.+|+.++......+.+.|+++.|+.++.+++..++..|++.|.++...
T Consensus 353 ~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 353 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999989999999999999999999999999999999999988754
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=273.94 Aligned_cols=279 Identities=15% Similarity=0.163 Sum_probs=246.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-----------------------------hhh---HHhhccCchHH
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE-----------------------------EAR---VFTGANGFVVA 473 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~-----------------------------~nr---~~i~~~G~I~~ 473 (775)
..++.|+..|.++ +..++..|++.|.+++.+.+ .++ ..++++|+||.
T Consensus 421 g~Ip~LV~LL~s~-d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~ 499 (810)
T 3now_A 421 ASIHALMDLARGG-NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA 499 (810)
T ss_dssp HHHHHHHHHHHTT-CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred chHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence 4577888889887 88999999999999998542 233 57889999999
Q ss_pred HHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCcccccc
Q 004073 474 LLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIG 551 (775)
Q Consensus 474 Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~ 551 (775)
|+.+|++ .++.+|++|+++|.|++. +++++..++++|++|+|+.+|.+++. ++.|+++|.+|+...+....+.
T Consensus 500 LV~LL~s----~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~ 574 (810)
T 3now_A 500 LCALAKT----ESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFS 574 (810)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTT
T ss_pred HHHHHcC----CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhc
Confidence 9999998 789999999999999985 67899999999999999999999876 6889999999987655444332
Q ss_pred c---cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc
Q 004073 552 S---SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA 627 (775)
Q Consensus 552 ~---~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~ 627 (775)
. .|++|+|+.+|.++.+...+..|++||.||+..+ +++..++++|+++.|+.+|.+++..++..|+++|.||+.++
T Consensus 575 ~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~ 654 (810)
T 3now_A 575 GQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE 654 (810)
T ss_dssp THHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH
T ss_pred chhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence 1 4799999999987635556679999999999875 68999999999999999999989999999999999999999
Q ss_pred ccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHH-CCCHHHHHHhhhcCChHHHHHHHHHHHH
Q 004073 628 AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQ-EGVIPALVSISVNGSTRGRDKAQRLLML 706 (775)
Q Consensus 628 e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~-~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~ 706 (775)
+.+..+....|+++.|+.++.+.+..+|+.|+++|.+|+.+++..++.+++ +|+++.|+.|+.+++.++|+.|.+.|.+
T Consensus 655 ~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~N 734 (810)
T 3now_A 655 DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILN 734 (810)
T ss_dssp HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 999888864599999999999999999999999999999977788888888 8999999999999999999999999999
Q ss_pred hHhc
Q 004073 707 FREQ 710 (775)
Q Consensus 707 L~~~ 710 (775)
+...
T Consensus 735 L~~~ 738 (810)
T 3now_A 735 MINA 738 (810)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 8763
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-27 Score=262.91 Aligned_cols=280 Identities=15% Similarity=0.109 Sum_probs=237.4
Q ss_pred HHHHHHHHhcCC-----------CHHHHHHHHHHHHHHhccChhhhHHhhccCch----------HHHHHHhchhccCCC
Q 004073 428 YQDFLNVLNEGE-----------NLGQKCNIVEQIRLLLKDDEEARVFTGANGFV----------VALLRFLESAVCERN 486 (775)
Q Consensus 428 i~~Ll~~L~s~~-----------~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I----------~~Lv~lL~s~~~~~d 486 (775)
++.||+.|.... +.+.|.+|+++|.+++...++......+.|++ +.++++|.+.....+
T Consensus 72 ~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (458)
T 3nmz_A 72 LPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMD 151 (458)
T ss_dssp HHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSC
T ss_pred HHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccc
Confidence 556677776531 37999999999999999988888888888888 777777876421111
Q ss_pred ----------HHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccC--------C-----hHHHHHHHHhccccc
Q 004073 487 ----------SYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS--------N-----SHGAATALYLNLSFL 543 (775)
Q Consensus 487 ----------~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~--------~-----~~~~AaaaL~~Ls~~ 543 (775)
...+.+|+++|.|++. +++||..|++.|++++|+.+|... + .+.+|+++|.||+..
T Consensus 152 ~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~ 230 (458)
T 3nmz_A 152 QDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG 230 (458)
T ss_dssp CCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCC
Confidence 1123489999999975 688999999999999999999521 1 157899999999987
Q ss_pred CC-ccccccc-cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC--CCChHHHHHcCcHHHHHHh-ccCCChHHHHHHHH
Q 004073 544 DD-AKPIIGS-SHAVPFLVELCKGKTEHQCKLDALHALYNLSTI--PSNIPNLLSAGIISGLQSL-AVPGDPMWTEKSLA 618 (775)
Q Consensus 544 ~~-~k~~I~~-~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~--~~nk~~iv~aG~V~~Lv~L-L~~~~~~i~e~al~ 618 (775)
++ +|..|.. .|+||+||.+|.++ ++++++.|+++|.||+.. ++||..++++|+|++|+++ +.+++..+++.|+.
T Consensus 231 ~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~ 309 (458)
T 3nmz_A 231 DVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLS 309 (458)
T ss_dssp CHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred CcccHHHHHHcCCcHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHH
Confidence 65 7777754 56799999999998 999999999999999975 4689999999999999996 56678889999999
Q ss_pred HHHHHhC-CcccHHHHhhCCCcHHHHHHHhcCCCH----HHHHHHHHHHHHhhc---CChHhHHHHHHCCCHHHHHHhhh
Q 004073 619 VLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGEL----IEQEQAVSCLFLLCN---GNEKCCQMVLQEGVIPALVSISV 690 (775)
Q Consensus 619 ~L~nLa~-~~e~~~~i~~~~g~I~~Lv~lL~~~s~----~~~e~Av~~L~~Lc~---~~~~~~~~v~~~G~i~~Lv~Ll~ 690 (775)
+|+||+. +++++..|....|+|+.|+.+|.++++ .++++|+++|.+|+. .++++++.+.+.|+++.|+.++.
T Consensus 310 aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~ 389 (458)
T 3nmz_A 310 ALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 389 (458)
T ss_dssp HHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSS
T ss_pred HHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHc
Confidence 9999999 778899998557999999999997655 489999999999997 67789999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhHh
Q 004073 691 NGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 691 ~g~~~~k~kA~~LL~~L~~ 709 (775)
+++..+++.|+++|.+|..
T Consensus 390 ~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 390 SHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp CSCHHHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHHHc
Confidence 9999999999999999984
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=261.52 Aligned_cols=280 Identities=19% Similarity=0.185 Sum_probs=246.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~-~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
.+..+|..|.++ +.+.|.+|+..+|.+... .......+++.|+||.||++|++. +++.+|..|+++|.|++.+++
T Consensus 58 ~i~~~v~~l~s~-d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~---~~~~lq~~Aa~aL~nias~~~ 133 (510)
T 3ul1_B 58 SVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGTS 133 (510)
T ss_dssp CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT---TCHHHHHHHHHHHHHHHTSCH
T ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCH
Confidence 478899999999 999999999999987643 333456788999999999999762 578999999999999998888
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhccccc-CCccccccccCchHHHHHhhcCC----CCHHHHHHHHHH
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGK----TEHQCKLDALHA 578 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~----~~~~~k~~Al~a 578 (775)
+++..++++|++|.|+.+|.+++. ++.|+++|.||+.+ ++++..+...|++++|+.+|... .....+..++++
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 213 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 899999999999999999999876 58899999999986 46788888899999999999865 134678899999
Q ss_pred HHHhcCCCCChHHHH-HcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHH
Q 004073 579 LYNLSTIPSNIPNLL-SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ 657 (775)
Q Consensus 579 L~nLs~~~~nk~~iv-~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~ 657 (775)
|.|++.+..+...+. ..|+++.|+.+|.+.+..++..|+++|.+|+.....+..++...|+++.|+.+|.++++.++..
T Consensus 214 L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 293 (510)
T 3ul1_B 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293 (510)
T ss_dssp HHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhH
Confidence 999998876655544 4789999999999999999999999999999987776666555799999999999999999999
Q ss_pred HHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 658 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 658 Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
|+.+|.+|+..++..+..+++.|+++.|+.++.++++.+++.|+++|.++...
T Consensus 294 al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~ 346 (510)
T 3ul1_B 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 346 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999988999999999999999999999999999999999998753
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=260.09 Aligned_cols=277 Identities=16% Similarity=0.112 Sum_probs=227.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~-~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
..+..||..|.++ +.++|..|+++|++|+.. +++||..|++.|+||+||++|.+. .+..+|++|+++|.||+. +
T Consensus 90 G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~---~~~~~~e~aa~aL~nLS~-~ 164 (584)
T 3l6x_A 90 KGIPVLVGLLDHP-KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKA---RDMDLTEVITGTLWNLSS-H 164 (584)
T ss_dssp THHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHC---CSHHHHHHHHHHHHHHTT-S
T ss_pred CCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHhC-C
Confidence 4678899999998 999999999999999985 799999999999999999999873 478899999999999986 6
Q ss_pred CchhHHHHhhCcHHHHHHHhc---cC---------------Ch--HHHHHHHHhcccccCC-ccccccc-cCchHHHHHh
Q 004073 505 NRNKELMLAAGVIPLLEKMIS---NS---------------NS--HGAATALYLNLSFLDD-AKPIIGS-SHAVPFLVEL 562 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~---s~---------------~~--~~~AaaaL~~Ls~~~~-~k~~I~~-~g~i~~LV~L 562 (775)
+.+|..|++ |++|+|+.+|. ++ +. .++|+++|.||+...+ +|..|.+ .|++++||.+
T Consensus 165 ~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~ 243 (584)
T 3l6x_A 165 DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFI 243 (584)
T ss_dssp GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHH
T ss_pred chhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHH
Confidence 788998885 56999999872 11 11 4678888888887653 3665555 3445566655
Q ss_pred hc-------------------------------------------------------------------------CCCCH
Q 004073 563 CK-------------------------------------------------------------------------GKTEH 569 (775)
Q Consensus 563 L~-------------------------------------------------------------------------~~~~~ 569 (775)
|+ ...++
T Consensus 244 L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~ 323 (584)
T 3l6x_A 244 VQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTP 323 (584)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCH
T ss_pred HHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCH
Confidence 53 21245
Q ss_pred HHHHHHHHHHHHhcCCCC-----ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHH
Q 004073 570 QCKLDALHALYNLSTIPS-----NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLA 644 (775)
Q Consensus 570 ~~k~~Al~aL~nLs~~~~-----nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv 644 (775)
.++++|++||.|||.+.. ++..+.+.|+++.|++||.+++..+++.|+++|.||+.+...+..| . .|+|+.||
T Consensus 324 ~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~-~g~ip~LV 401 (584)
T 3l6x_A 324 AILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-G-KHAIPNLV 401 (584)
T ss_dssp HHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-H-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-H-hCCHHHHH
Confidence 666777777777765432 2333345799999999999999999999999999999999998877 4 38999999
Q ss_pred HHhcCC--------CHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC--ChHHHHHHHHHHHHhHhc
Q 004073 645 TVLDTG--------ELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG--STRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 645 ~lL~~~--------s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g--~~~~k~kA~~LL~~L~~~ 710 (775)
.+|..+ +..+...|+++|.+|+..++++.+.+.+.|+|+.|+.|+.++ .+++++.|..+|.++..+
T Consensus 402 ~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 402 KNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred HHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 999876 578899999999999999999999999999999999999987 899999999999998643
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=252.65 Aligned_cols=226 Identities=18% Similarity=0.117 Sum_probs=201.8
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhc-cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc-CCchhHHHHhhCcH
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN-NNRNKELMLAAGVI 517 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~nk~~i~~~G~i 517 (775)
+.+.|..|++.|++++.+++++|..+.. .|+||.|+++|.+ .+..+|+.|+++|.||+.. ++++|..+++.|+|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s----~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~I 172 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS----ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 172 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC----SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC----CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCH
Confidence 4678999999999999998889998865 6779999999998 7999999999999999874 45789999999999
Q ss_pred HHHHHHh-ccCCh--HHHHHHHHhcccc-cCCcccccc-ccCchHHHHHhhcCCCCH----HHHHHHHHHHHHhcC----
Q 004073 518 PLLEKMI-SNSNS--HGAATALYLNLSF-LDDAKPIIG-SSHAVPFLVELCKGKTEH----QCKLDALHALYNLST---- 584 (775)
Q Consensus 518 ~~Lv~lL-~s~~~--~~~AaaaL~~Ls~-~~~~k~~I~-~~g~i~~LV~LL~~~~~~----~~k~~Al~aL~nLs~---- 584 (775)
|.|+.+| ++++. ++.|+++|.||+. .+++|..|. ..|+||+|+++|.++ +. .+++.|+++|+||+.
T Consensus 173 p~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~ 251 (354)
T 3nmw_A 173 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIAT 251 (354)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccC
Confidence 9999985 55553 5789999999998 668888888 689999999999977 43 589999999999995
Q ss_pred CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC-CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004073 585 IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 585 ~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~-~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
+++++..++++|+|+.|+.+|.+++..+++.|+++|.||+. +++.+..+.+. |+|+.|+++|.++++.+++.|+++|.
T Consensus 252 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~-G~i~~Lv~LL~s~~~~i~~~A~~aL~ 330 (354)
T 3nmw_A 252 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM-GAVSMLKNLIHSKHKMIAMGSAAALR 330 (354)
T ss_dssp CHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHT-THHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHC-CCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999994 67888888874 99999999999999999999999999
Q ss_pred HhhcCChH
Q 004073 664 LLCNGNEK 671 (775)
Q Consensus 664 ~Lc~~~~~ 671 (775)
+|+.+++.
T Consensus 331 nL~~~~~~ 338 (354)
T 3nmw_A 331 NLMANRPA 338 (354)
T ss_dssp HHHTTCCG
T ss_pred HHHcCCHH
Confidence 99987654
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-25 Score=252.34 Aligned_cols=281 Identities=19% Similarity=0.182 Sum_probs=248.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~-~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
..+..++..+.++ +.+.|..|+..+|.+... .......+++.|+||.||++|... .++.+|..|+++|.|++.++
T Consensus 76 ~~l~~lv~~l~s~-d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~---~~~~~q~~Aa~aL~nia~~~ 151 (529)
T 3tpo_A 76 WSVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGT 151 (529)
T ss_dssp CCHHHHHHHHTSS-CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCC
Confidence 4578899999998 999999999999987643 333466788999999999999752 57899999999999999877
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhccccc-CCccccccccCchHHHHHhhcCC----CCHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGK----TEHQCKLDALH 577 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~----~~~~~k~~Al~ 577 (775)
+.++..+++.|++|.|+.+|.+++. ++.|+++|.||+.+ ++++..+...|++++|+.+|... .....+..+++
T Consensus 152 ~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 152 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHH
Confidence 7888999999999999999999886 58899999999976 57888999999999999999865 13467889999
Q ss_pred HHHHhcCCCCChHHHH-HcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHH
Q 004073 578 ALYNLSTIPSNIPNLL-SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQE 656 (775)
Q Consensus 578 aL~nLs~~~~nk~~iv-~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e 656 (775)
+|.|++.+..+...+. ..|++|.|+.+|.+++..++..|+++|.+|+.....+..++...|+++.|+.+|.+.++.++.
T Consensus 232 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 311 (529)
T 3tpo_A 232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 311 (529)
T ss_dssp HHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred HHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHH
Confidence 9999998876555444 478999999999999999999999999999998777666655569999999999999999999
Q ss_pred HHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 657 QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 657 ~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
.|+.+|.+|+.+++.....+++.|+++.|+.++.++++.+++.|+++|.++...
T Consensus 312 ~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~ 365 (529)
T 3tpo_A 312 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 365 (529)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999988999999999999999999999999999999999998754
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=263.72 Aligned_cols=281 Identities=14% Similarity=0.094 Sum_probs=245.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|.++ +..+|.+|++.|.+++. +.++|..+++.|+||+|+.+|.+ .+..+|+.|+++|.||+.+.+.
T Consensus 496 aVp~LV~LL~s~-s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s----~~~~~k~~Aa~AL~nL~~~~~p 569 (810)
T 3now_A 496 ITTALCALAKTE-SHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALE----GTEKGKRHATQALARIGITINP 569 (810)
T ss_dssp HHHHHHHHHTCC-CHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHSCH
T ss_pred CHHHHHHHHcCC-CHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcc----CCHHHHHHHHHHHHHHhcCCCh
Confidence 466778888888 99999999999999996 57799999999999999999988 6889999999999999864332
Q ss_pred hhHHH---HhhCcHHHHHHHhccCCh---HHHHHHHHhccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHH
Q 004073 507 NKELM---LAAGVIPLLEKMISNSNS---HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL 579 (775)
Q Consensus 507 nk~~i---~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL 579 (775)
...+ ...|++|+|+.+|.++.. ...|+++|.||+.. ++++..|.+.|+++.|+.+|.++ ++.+++.|+++|
T Consensus 570 -~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L 647 (810)
T 3now_A 570 -EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCL 647 (810)
T ss_dssp -HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHH
T ss_pred -hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 2211 124699999999987643 35699999999987 46788888899999999999998 899999999999
Q ss_pred HHhcCCCCChHHHHH-cCcHHHHHHhccCCChHHHHHHHHHHHHHhC-CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHH
Q 004073 580 YNLSTIPSNIPNLLS-AGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQ 657 (775)
Q Consensus 580 ~nLs~~~~nk~~iv~-aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~-~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~ 657 (775)
.||+.+++++..+++ .|+++.|+.|+.+.+..+++.|+++|+||+. ++.....++...|+|+.|+.+|.+++..++..
T Consensus 648 ~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~ 727 (810)
T 3now_A 648 CNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHR 727 (810)
T ss_dssp HHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHH
T ss_pred HHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHH
Confidence 999999999999986 7999999999999999999999999999998 67777888875699999999999999999999
Q ss_pred HHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC---ChHHHHHHHHHHHHhHhccCCCC
Q 004073 658 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG---STRGRDKAQRLLMLFREQRQRDH 715 (775)
Q Consensus 658 Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g---~~~~k~kA~~LL~~L~~~~~~~~ 715 (775)
|+++|.||+..+.+....+.+.|++++|+.|+... +.++.+.|...|..+-++..-+.
T Consensus 728 A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~ 788 (810)
T 3now_A 728 GIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIER 788 (810)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccC
Confidence 99999999988888999999999999999998644 78999999999999987765443
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=223.58 Aligned_cols=242 Identities=21% Similarity=0.253 Sum_probs=221.0
Q ss_pred CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhccccc-CC
Q 004073 469 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DD 545 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~-~~ 545 (775)
|.|+.|+.+|.+ .++.++..|+++|.+++..+++++..+++.|+++.|+.+|.+++. +..|+++|.+|+.. ++
T Consensus 2 ~~i~~L~~~L~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 2 NDVEKLVKLLTS----TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp CHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred CcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 679999999998 789999999999999987666689999999999999999998875 57899999999987 77
Q ss_pred ccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc-CCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 004073 546 AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS-TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 624 (775)
Q Consensus 546 ~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs-~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa 624 (775)
++..+.+.|+++.|+.+|+++ ++.++..|+++|.||+ ..++++..+++.|+++.|+++|.+++..++..++++|.||+
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 888898899999999999998 9999999999999999 56678999999999999999999999999999999999999
Q ss_pred CCcccH-HHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHH
Q 004073 625 ASAAGK-EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRL 703 (775)
Q Consensus 625 ~~~e~~-~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~L 703 (775)
...+.. ..+.. .|+++.|+.+|.++++.+++.|+.+|.+||..++.....+.+.|+++.|+.++.++++.+++.|..+
T Consensus 157 ~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~ 235 (252)
T 4hxt_A 157 SGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRA 235 (252)
T ss_dssp TSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHH
Confidence 865554 55665 5999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred HHHhHhccCCCCC
Q 004073 704 LMLFREQRQRDHP 716 (775)
Q Consensus 704 L~~L~~~~~~~~~ 716 (775)
|.+|........+
T Consensus 236 L~~l~~~~~~~~~ 248 (252)
T 4hxt_A 236 LENIKSGGWLEHH 248 (252)
T ss_dssp HHHHHHTCBCCC-
T ss_pred HHHHHcCCCcccc
Confidence 9999988766544
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-24 Score=243.95 Aligned_cols=279 Identities=18% Similarity=0.166 Sum_probs=247.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|.++++..+|..|++.|.+++.++++++..+++.|+|+.|+.+|.+ .+..+++.|+++|.|++..++
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~aL~~l~~~~~ 192 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS----SSDDVREQAVWALGNVAGDSP 192 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC----CCHHHHHHHHHHHHHHhCCCh
Confidence 3567788888877339999999999999999999999999999999999999998 789999999999999987667
Q ss_pred chhHHHHhhCcHHHHHHHhc-cCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 506 RNKELMLAAGVIPLLEKMIS-NSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~-s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.++..+++.|+++.|+.+|. +.+. +..|+++|.+|+............|+++.|+.+|.++ ++.++..|+++|.+|
T Consensus 193 ~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l 271 (528)
T 4b8j_A 193 KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN-DEEVLTDACWALSYL 271 (528)
T ss_dssp HHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence 77889999999999999994 4443 5789999999998765555555589999999999998 999999999999999
Q ss_pred cCCCCCh-HHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHHHhcCC-CHHHHHHHH
Q 004073 583 STIPSNI-PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTG-ELIEQEQAV 659 (775)
Q Consensus 583 s~~~~nk-~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~~~-s~~~~e~Av 659 (775)
+....++ ..+++.|+++.|+.+|.+.+..++..|+++|.||+.... ....+.. .|+++.|+.+|.++ ++.++..|+
T Consensus 272 ~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~ 350 (528)
T 4b8j_A 272 SDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSIKKEAC 350 (528)
T ss_dssp TSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHH
Confidence 9876654 567789999999999999999999999999999998544 4455555 59999999999998 999999999
Q ss_pred HHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 660 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
++|.+|+.++......+.+.|+++.|+.++.++++.++..|..+|.++...
T Consensus 351 ~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 351 WTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 999999998888888999999999999999999999999999999999866
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-24 Score=246.54 Aligned_cols=280 Identities=16% Similarity=0.143 Sum_probs=248.2
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhhHHhhccCchHHHHHHhchhccCCC-HHHHHHHHHHHHHhhc
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTGANGFVVALLRFLESAVCERN-SYAQEIGAMALFNLAV 502 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~-~nr~~i~~~G~I~~Lv~lL~s~~~~~d-~~~qe~A~~aL~nLs~ 502 (775)
.+.+..++..|.++ +++.|..|+..|+.++.... .++..+++.|+||.|+.+|.+ .+ +.+|..|+++|.+++.
T Consensus 73 ~~~l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~----~~~~~v~~~A~~~L~~l~~ 147 (528)
T 4b8j_A 73 LESLPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR----EDFPQLQFEAAWALTNIAS 147 (528)
T ss_dssp --CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC----TTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC----CCCHHHHHHHHHHHHHHhC
Confidence 35688899999888 89999999999999987654 677888999999999999987 44 8999999999999997
Q ss_pred cCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHH
Q 004073 503 NNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL 579 (775)
Q Consensus 503 ~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL 579 (775)
.+.+++..+++.|++|.|+.+|.+++. ++.|+++|.+|+.. +.++..+...|++++|+.+|....+..++..|+++|
T Consensus 148 ~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L 227 (528)
T 4b8j_A 148 GTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTL 227 (528)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 667889999999999999999998775 57899999999876 456778888899999999994433899999999999
Q ss_pred HHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHH
Q 004073 580 YNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 659 (775)
Q Consensus 580 ~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av 659 (775)
.||+....+....+..|+++.|+.+|.+.+..++..|+++|.+|+.....+...+...|+++.|+.+|.++++.+++.|+
T Consensus 228 ~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~ 307 (528)
T 4b8j_A 228 SNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 307 (528)
T ss_dssp HHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHH
Confidence 99998876666677799999999999999999999999999999988776644433359999999999999999999999
Q ss_pred HHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcC-ChHHHHHHHHHHHHhHh
Q 004073 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNG-STRGRDKAQRLLMLFRE 709 (775)
Q Consensus 660 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g-~~~~k~kA~~LL~~L~~ 709 (775)
++|.+|+.++....+.+++.|+++.|+.++.++ ++.++..|.++|.++..
T Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 308 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 999999998888899999999999999999999 99999999999999975
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=224.03 Aligned_cols=235 Identities=22% Similarity=0.257 Sum_probs=212.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..++..|.++ +.++|..|++.|+.++..+.+++..+.+.|+|+.|+.+|.+ .++.++..|+++|.|++.+++
T Consensus 12 ~~~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 12 SELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp CSHHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCH
T ss_pred chHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCH
Confidence 4578899999998 89999999999988777678889999999999999999998 679999999999999987678
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCcc-ccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAK-PIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k-~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.++..+++.|++|.|+.+|++++. ++.|+++|.+|+..+.++ ..+...|+++.|+++|.++ +..++..|+++|.||
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNI 165 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 899999999999999999999875 578999999999998888 7788899999999999998 999999999999999
Q ss_pred cCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC-cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHH
Q 004073 583 STIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS 660 (775)
Q Consensus 583 s~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~-~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~ 660 (775)
+... +++..+++.|+++.|+.+|.+++..+++.|+++|.||+.. ++.+..+.. .|+++.|+.++.++++.+++.|+.
T Consensus 166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~A~~ 244 (252)
T 4db8_A 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQE 244 (252)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTTCSSSHHHHTHHH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhCCCCHHHHHHHHH
Confidence 9755 5777888999999999999999999999999999999964 455666666 599999999999999999999999
Q ss_pred HHHHhhc
Q 004073 661 CLFLLCN 667 (775)
Q Consensus 661 ~L~~Lc~ 667 (775)
+|.+|++
T Consensus 245 ~L~~l~~ 251 (252)
T 4db8_A 245 ALEKLQS 251 (252)
T ss_dssp HHHTTC-
T ss_pred HHHHHhc
Confidence 9999985
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=216.43 Aligned_cols=236 Identities=21% Similarity=0.248 Sum_probs=213.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|.++ +.++|..|+..|++++..+++++..+.+.|+++.|+++|.+ .+..++..|+++|.+++.+++.
T Consensus 3 ~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 3 DVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHH
T ss_pred cHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHcCChH
Confidence 467888899888 89999999999999999999999999999999999999998 7899999999999999876688
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhccc-ccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLS-FLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls-~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
++..+++.|+++.|+.+|.+++. +..|+++|.+|+ ..++++..+.+.|+++.|+++|+++ ++.++..|+++|.||+
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIA 156 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 89999999999999999998775 578999999999 5667888888899999999999998 9999999999999999
Q ss_pred CCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC-cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHH
Q 004073 584 TIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSC 661 (775)
Q Consensus 584 ~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~-~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~ 661 (775)
... .++..+++.|+++.|+.+|.+++..++..|+++|.||+.. ++.+..+.. .|+++.|++++.++++.+++.|+.+
T Consensus 157 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~ 235 (252)
T 4hxt_A 157 SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEAQRA 235 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHHHHH
Confidence 855 4567888999999999999999999999999999999984 445556666 5999999999999999999999999
Q ss_pred HHHhhcCC
Q 004073 662 LFLLCNGN 669 (775)
Q Consensus 662 L~~Lc~~~ 669 (775)
|.+|+...
T Consensus 236 L~~l~~~~ 243 (252)
T 4hxt_A 236 LENIKSGG 243 (252)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 99999754
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-24 Score=220.70 Aligned_cols=236 Identities=19% Similarity=0.223 Sum_probs=213.7
Q ss_pred cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccc-cC
Q 004073 468 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSF-LD 544 (775)
Q Consensus 468 ~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~-~~ 544 (775)
....+.++..|.+ +|+.+|..|+++|.++...++.++..+++.|++|.|+.+|.+++. +..|+++|.+++. .+
T Consensus 11 ~~~~~~~~~~L~s----~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 11 GSELPQMTQQLNS----DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp TCSHHHHHHHHHS----SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cchHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 4568899999998 788999999999988655566778889999999999999998875 5779999999997 56
Q ss_pred CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCCh-HHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 004073 545 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNI-PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL 623 (775)
Q Consensus 545 ~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk-~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nL 623 (775)
+++..+.+.|+++.|+.+|+++ ++.+++.|+++|.||+.+..++ ..+++.|+++.|+.+|.+++..++..|+++|.||
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7888888899999999999998 9999999999999999999888 8899999999999999999999999999999999
Q ss_pred hCCcc-cHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHH
Q 004073 624 AASAA-GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR 702 (775)
Q Consensus 624 a~~~e-~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~ 702 (775)
+.... .+..+.. .|+++.|+.+|.++++.+++.|+.+|.+|+..++.....+.+.|+++.|+.++.++++.+++.|..
T Consensus 166 ~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~ 244 (252)
T 4db8_A 166 ASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 244 (252)
T ss_dssp TTSCHHHHHHHHH-TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHH
T ss_pred HcCChHHHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHH
Confidence 98654 4455555 599999999999999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHhHh
Q 004073 703 LLMLFRE 709 (775)
Q Consensus 703 LL~~L~~ 709 (775)
+|.+|..
T Consensus 245 ~L~~l~~ 251 (252)
T 4db8_A 245 ALEKLQS 251 (252)
T ss_dssp HHHTTC-
T ss_pred HHHHHhc
Confidence 9998864
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-23 Score=235.60 Aligned_cols=278 Identities=15% Similarity=0.140 Sum_probs=245.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|.++.++.+|..|++.|.+++..+++++..+++.|+++.|+.+|.+ .+..+++.|+++|.+++..++.
T Consensus 131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~----~~~~vr~~A~~aL~~l~~~~~~ 206 (530)
T 1wa5_B 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT----GSVEVKEQAIWALGNVAGDSTD 206 (530)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH----CCHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCcc
Confidence 466777777764478999999999999999988999999999999999999998 7999999999999999875567
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC-CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
++..++..|+++.|+.+|.+.+. +..|+++|.+|+... .........|+++.|+.+|.++ ++.++..|+++|.+|+
T Consensus 207 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLS 285 (530)
T ss_dssp HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHH
T ss_pred chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence 88888999999999999998664 577999999999875 4445555589999999999998 9999999999999999
Q ss_pred CCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHH
Q 004073 584 TIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSC 661 (775)
Q Consensus 584 ~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~ 661 (775)
... +....+++.|+++.|+.+|.+.+..++..|+.+|.||+...+ ....+.. .|+++.|+.+|.++++.+++.|+++
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~vr~~A~~a 364 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKENIKKEACWT 364 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCCCHHHHHHHHHH
Confidence 765 467778889999999999999899999999999999997644 4445555 5999999999999999999999999
Q ss_pred HHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 662 LFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 662 L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
|.+|+.+++...+.+++.|+++.|+.++.++++.++..|.++|.++...
T Consensus 365 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999998888888899999999999999999999999999999999765
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-22 Score=225.42 Aligned_cols=277 Identities=19% Similarity=0.163 Sum_probs=243.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|.++.+.++|..|++.|.+++..+.+++..+.+.|+++.|+.+|.+ .++.+++.|+++|.+++..++.
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~----~~~~vr~~a~~~L~~l~~~~~~ 140 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS----EFEDVQEQAVWALGNIAGDSTM 140 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHccCCHH
Confidence 466777778766478999999999999999888888888899999999999998 7999999999999999876567
Q ss_pred hhHHHHhhCcHHHHHHHhcc-CCh--HHHHHHHHhcccccC--CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 507 NKELMLAAGVIPLLEKMISN-SNS--HGAATALYLNLSFLD--DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s-~~~--~~~AaaaL~~Ls~~~--~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
++..+++.|+++.|+.+|.+ .+. +..|+++|.+|+... ..+..+. .+++|.|+.+|.++ +..++..|+++|.+
T Consensus 141 ~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~-~~~v~~~a~~~L~~ 218 (450)
T 2jdq_A 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS-DTDVLADACWALSY 218 (450)
T ss_dssp HHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 88888999999999999986 343 578999999999764 3333333 79999999999998 99999999999999
Q ss_pred hcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHH-HHhhCCCcHHHHHHHhcCCCHHHHHHHH
Q 004073 582 LSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKE-EMNSTPGLVSGLATVLDTGELIEQEQAV 659 (775)
Q Consensus 582 Ls~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~-~i~~~~g~I~~Lv~lL~~~s~~~~e~Av 659 (775)
|+... +++..+++.|+++.|+.+|.+.+..++..|+++|.+|+...+... .+.. .|+++.|+.+|.+.++.++..|+
T Consensus 219 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~vr~~a~ 297 (450)
T 2jdq_A 219 LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSSPKESIKKEAC 297 (450)
T ss_dssp HTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcCCCHHHHHHHH
Confidence 99764 567778889999999999998899999999999999998766544 4454 59999999999999999999999
Q ss_pred HHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 660 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
++|.+|+.+++...+.+.+.|+++.|+.++.++++++|..|..+|.++...
T Consensus 298 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 298 WTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 999999998888888899999999999999999999999999999999754
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-23 Score=236.42 Aligned_cols=278 Identities=16% Similarity=0.156 Sum_probs=247.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~-~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
..+..++..|.++ ++++|..|+..|+.++... ..++..+++.|++|.|+.+|.+. .++.+|..|+++|.+++..+
T Consensus 87 ~~i~~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~---~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 87 QELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN---QPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp CCHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCC
Confidence 4578899999988 8999999999999997643 45567788899999999999872 28999999999999998766
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
+.++..+++.|++|.|+.+|.+++. ++.|+++|.+|+.. ++++..+...|++++|+.+|.+. +..++..|+++|.+
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 6788888899999999999998775 58899999999976 46777888889999999999997 99999999999999
Q ss_pred hcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc-ccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHH
Q 004073 582 LSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 659 (775)
Q Consensus 582 Ls~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~-e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av 659 (775)
|+.+. .+....+..|+++.|+.+|.+++..++..++++|.+|+... +....+.. .|+++.|+.+|.+.++.+++.|+
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~ 320 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPAL 320 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhhHHHHH
Confidence 99876 66667778999999999999999999999999999999864 44566666 49999999999999999999999
Q ss_pred HHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 660 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
.+|.+|+.+++...+.+++.|+++.|+.++.+++..++..|.++|.++..
T Consensus 321 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 321 RAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999888888889999999999999999999999999999999975
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-23 Score=235.25 Aligned_cols=277 Identities=21% Similarity=0.178 Sum_probs=244.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..++..|.++.+++++..|+..|++++.+ ++++..+++.|+||.|+++|.+ .++.+|..|+++|.|++..++
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~ 133 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQE 133 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCc
Confidence 45777888887654899999999999999876 5699999999999999999998 789999999999999987667
Q ss_pred chhHHHHhhCcHHHHHHHhccCChH--HHHHHHHhccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.++..+++.|++|.|+.+|.+++.. ..++.+|.+++.. ++++..+...|+++.|+++|+++.....+..++.+|.||
T Consensus 134 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l 213 (529)
T 1jdh_A 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213 (529)
T ss_dssp THHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 7788888999999999999987753 5566788899874 678888888999999999999875677888899999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004073 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
+.+++++..+++.|+++.|+.++.+++..++..++++|.||+....... . ..++++.|+++|.+.++.+++.|+++|
T Consensus 214 ~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~-~~~~i~~L~~ll~~~~~~v~~~a~~~L 290 (529)
T 1jdh_A 214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--G-MEGLLGTLVQLLGSDDINVVTCAAGIL 290 (529)
T ss_dssp TTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--C-CHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--H-HHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999998899999999999999998754332 1 137899999999999999999999999
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhhcC--ChHHHHHHHHHHHHhHhc
Q 004073 663 FLLCNGNEKCCQMVLQEGVIPALVSISVNG--STRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g--~~~~k~kA~~LL~~L~~~ 710 (775)
.+|+..+++.+..+.+.|+++.|+.++.+. .+.+++.|..+|.+|...
T Consensus 291 ~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 291 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 999998888999999999999999888763 379999999999999653
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=240.58 Aligned_cols=276 Identities=21% Similarity=0.178 Sum_probs=244.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..++..|.++.+.++|..|+..|+.++.. .+++..+.+.|+|+.|+.+|.+ .++.+|..|+++|.|++..++
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~A~~aL~nL~~~~~ 130 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQE 130 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHhCcc
Confidence 45777888888655789999999999999887 5699999999999999999998 789999999999999987666
Q ss_pred chhHHHHhhCcHHHHHHHhccCChHHH--HHHHHhcccc-cCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNSHGA--ATALYLNLSF-LDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~~~~--AaaaL~~Ls~-~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.++..+++.|++|.|+.+|.+++.+.. ++.+|.+|+. +++++..+.+.|+++.|+++|++......+..++.+|+||
T Consensus 131 ~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nL 210 (644)
T 2z6h_A 131 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 210 (644)
T ss_dssp THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 778888899999999999999876533 4558889986 6788889999999999999999875678889999999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004073 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
+.+++++..++++|+++.|+.++.+++..+++.++++|.||+....... .. .++++.|+.+|.+.++.+++.|+++|
T Consensus 211 s~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~--~~-~~~i~~Lv~lL~~~d~~v~~~a~~aL 287 (644)
T 2z6h_A 211 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GM-EGLLGTLVQLLGSDDINVVTCAAGIL 287 (644)
T ss_dssp TTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCC--SC-HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhh--hh-hhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999998899999999999999997643321 11 37899999999999999999999999
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhhc-CC-hHHHHHHHHHHHHhHh
Q 004073 663 FLLCNGNEKCCQMVLQEGVIPALVSISVN-GS-TRGRDKAQRLLMLFRE 709 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~-g~-~~~k~kA~~LL~~L~~ 709 (775)
.+|+..+++++..+.+.|+++.|+.++.+ ++ +.++..|..+|.+|..
T Consensus 288 ~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 288 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 99999888899999999999999988876 33 7999999999999964
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-23 Score=215.11 Aligned_cols=194 Identities=18% Similarity=0.160 Sum_probs=172.8
Q ss_pred CchHHHHHHhchhccCCCH--HHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccc-c
Q 004073 469 GFVVALLRFLESAVCERNS--YAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSF-L 543 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~--~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~-~ 543 (775)
-.||.||++|.+ +++ .+|..|+++|.+++..++.+|..+++.|+||+|+.+|++++. ++.|+++|.||+. +
T Consensus 8 ~~i~~lV~lL~s----~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 8 MTLERAVSMLEA----DHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp CCHHHHHHTCCS----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHhCC----CCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 468999999998 555 899999999999998788899999999999999999999876 6889999999998 5
Q ss_pred CCccccccccCchHHHHHhhc-CCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhcc----------------
Q 004073 544 DDAKPIIGSSHAVPFLVELCK-GKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAV---------------- 606 (775)
Q Consensus 544 ~~~k~~I~~~g~i~~LV~LL~-~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~---------------- 606 (775)
+++|..|.+.|+||+||++|+ ++ +.++++.|+.+|+||+..+.||..+++. +|++|++++.
T Consensus 84 ~~nk~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 84 NDNKLEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred HHHHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccc
Confidence 789999999999999999998 46 8999999999999999999999999974 7999999663
Q ss_pred CCChHHHHHHHHHHHHHhC-CcccHHHHhhCCCcHHHHHHHhcCC------CHHHHHHHHHHHHHhhcC
Q 004073 607 PGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTG------ELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 607 ~~~~~i~e~al~~L~nLa~-~~e~~~~i~~~~g~I~~Lv~lL~~~------s~~~~e~Av~~L~~Lc~~ 668 (775)
..+..+++.|.++|.||+. ++++|..|.+.+|+|+.||.+++.+ +.+.+|+|+.+|+|||.+
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 1256889999999999988 5689999998889999999999852 568999999999999975
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-21 Score=217.99 Aligned_cols=275 Identities=16% Similarity=0.165 Sum_probs=236.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhc--cChhhhHHhhcc-CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLK--DDEEARVFTGAN-GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak--~~~~nr~~i~~~-G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+..++..|.++ +.++|..|+..|+.++. .++..+. +.+. |+++.|+++|.+. .++.+|..|+++|.+++..+
T Consensus 22 l~~l~~~l~s~-~~~~r~~A~~~L~~l~~~~~~~~~~~-~~~~~~~i~~L~~~L~~~---~~~~v~~~a~~~L~~l~~~~ 96 (450)
T 2jdq_A 22 TSDMIEMIFSK-SPEQQLSATQKFRKLLSKEPNPPIDE-VISTPGVVARFVEFLKRK---ENCTLQFESAWVLTNIASGN 96 (450)
T ss_dssp CHHHHHHHHSS-CHHHHHHHHHHHHHHHHSSSSCCHHH-HHTSTTHHHHHHHHHTCT---TCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHH-HHHcCCcHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCC
Confidence 67788888888 89999999999999864 3444443 5555 9999999999872 38999999999999998766
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC-CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
.++...+++.|++|.|+.+|.+++. ++.|+++|.+++... +++..+...|+++.|+.+|.+..+..++..|+++|.|
T Consensus 97 ~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 6777778899999999999998775 578999999999865 5677777789999999999963389999999999999
Q ss_pred hcCCC--CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc-ccHHHHhhCCCcHHHHHHHhcCCCHHHHHHH
Q 004073 582 LSTIP--SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTGELIEQEQA 658 (775)
Q Consensus 582 Ls~~~--~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~-e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~A 658 (775)
|+.+. ..+..++ .|+++.|+.++.+++..++..++++|.+|+... +.+..+.. .|+++.|+.+|.+.++.+++.|
T Consensus 177 l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a 254 (450)
T 2jdq_A 177 LCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHNDYKVVSPA 254 (450)
T ss_dssp HHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTTCSCHHHHHHH
T ss_pred HhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHCCCchhHHHHH
Confidence 99764 3444444 899999999999999999999999999999865 44555555 5999999999999999999999
Q ss_pred HHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 659 VSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 659 v~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
+.+|.+|+.+++...+.+.+.|+++.|+.++.++++.+|..|..+|.++..
T Consensus 255 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~ 305 (450)
T 2jdq_A 255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA 305 (450)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999999999887888888999999999999999999999999999999875
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-23 Score=210.24 Aligned_cols=195 Identities=21% Similarity=0.187 Sum_probs=171.7
Q ss_pred hHHHHHHHHHhcCCCH--HHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc
Q 004073 426 ERYQDFLNVLNEGENL--GQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 503 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~--~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 503 (775)
..++.++..|.++ +. ++|..|+..|++++..++++|..|++.|+||+||++|++ .+..+|+.|+++|.||+..
T Consensus 8 ~~i~~lV~lL~s~-~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s----~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 8 MTLERAVSMLEAD-HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV----QNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp CCHHHHHHTCCSS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHhCCC-CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHhC
Confidence 5688899999988 66 889999999999999999999999999999999999998 7899999999999999976
Q ss_pred CCchhHHHHhhCcHHHHHHHhcc-CCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhc---CC-----------
Q 004073 504 NNRNKELMLAAGVIPLLEKMISN-SNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK---GK----------- 566 (775)
Q Consensus 504 ~~~nk~~i~~~G~i~~Lv~lL~s-~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~---~~----------- 566 (775)
+++||..|+++|+||+|+++|.+ ++. +++|+++|++||..+++|..|.+ +++|+|+.++. +|
T Consensus 83 ~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 83 DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccc
Confidence 78899999999999999999984 453 68899999999999999999986 57999999773 11
Q ss_pred -CCHHHHHHHHHHHHHhcCCC-CChHHHHHc-CcHHHHHHhccC------CChHHHHHHHHHHHHHhCC
Q 004073 567 -TEHQCKLDALHALYNLSTIP-SNIPNLLSA-GIISGLQSLAVP------GDPMWTEKSLAVLLNLAAS 626 (775)
Q Consensus 567 -~~~~~k~~Al~aL~nLs~~~-~nk~~iv~a-G~V~~Lv~LL~~------~~~~i~e~al~~L~nLa~~ 626 (775)
.+..++.+|..+|+||++.+ ++|..|.+. |+|+.|+.++.. .+...+|.|+.+|.||+-.
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 26799999999999999854 899999985 778999999864 2457789999999999864
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=223.79 Aligned_cols=276 Identities=17% Similarity=0.108 Sum_probs=242.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|.++ +.++|..|++.|++++.+++.++..+.+.|++|.|+.+|.+ .+..++..++.+|.+++..++
T Consensus 101 g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~----~~~~~~~~~~~~L~~la~~~~ 175 (529)
T 1jdh_A 101 GGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp THHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc----CCHHHHHHHHHHHHHHHhCCH
Confidence 4677888888887 89999999999999999988889999999999999999988 788999999999999998778
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
+++..+.+.|+++.|+.+|++++. ...++.+|.+|+..++++..+.+.|+++.|+.++.++ ++.++..|+++|.||
T Consensus 176 ~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC-ChHHHHHHHHHHHHH
Confidence 899999999999999999988764 3557888999999999999999899999999999998 999999999999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc-ccHHHHhhCCCcHHHHHHHhcC--CCHHHHHHHH
Q 004073 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDT--GELIEQEQAV 659 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~-e~~~~i~~~~g~I~~Lv~lL~~--~s~~~~e~Av 659 (775)
+....... ...|+++.|+++|.+.+..+++.|+++|.+|+... +++..+... |+++.|+++|.. .++.+++.|+
T Consensus 255 ~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~v~~L~~ll~~~~~~~~v~~~a~ 331 (529)
T 1jdh_A 255 SDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAI 331 (529)
T ss_dssp HTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHHccCCHHHHHHHHH
Confidence 97654322 23589999999999999999999999999999864 577788774 999999999985 3489999999
Q ss_pred HHHHHhhcCChH---hHHHHHHCCCHHHHHHhhhcCC-hHHHHHHHHHHHHhHhc
Q 004073 660 SCLFLLCNGNEK---CCQMVLQEGVIPALVSISVNGS-TRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 660 ~~L~~Lc~~~~~---~~~~v~~~G~i~~Lv~Ll~~g~-~~~k~kA~~LL~~L~~~ 710 (775)
.+|.+|+..++. .+..+.+.|+++.|+.++.++. ..+++.|.++|.++...
T Consensus 332 ~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 332 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp HHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 999999986433 4678899999999999999876 58999999999998753
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-21 Score=231.72 Aligned_cols=276 Identities=21% Similarity=0.178 Sum_probs=241.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|.++.+.++|..|+..|++++.. .+++..+++.|+|+.|+.+|.+ .+..++..|+++|.||+...+
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~----~~~~v~~~A~~aL~nLa~~~~ 266 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGS----PVDSVLFHAITTLHNLLLHQE 266 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCh
Confidence 45677788887655899999999999998876 6788899999999999999988 689999999999999998667
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccc-cCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSF-LDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~-~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.++..+++.|+++.|+.+|.+++. +..|+.+|.+++. +++++..+...|+++.|+.+|+++.....+..++.+|.+|
T Consensus 267 ~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 267 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 788888899999999999998765 4567778888886 4678888888899999999999885566778899999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004073 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
+.+..++..++++|+++.|+.++.+.+..++..|+++|.+|+....... . ..++++.|+.+|.+.++.+++.|+++|
T Consensus 347 s~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~--~-~~~~i~~Lv~lL~~~d~~vr~~A~~aL 423 (780)
T 2z6g_A 347 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--G-MEGLLGTLVQLLGSDDINVVTCAAGIL 423 (780)
T ss_dssp HTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS--C-CHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh--h-hhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999998899999999999999998654321 1 237899999999999999999999999
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhhc-CC-hHHHHHHHHHHHHhHh
Q 004073 663 FLLCNGNEKCCQMVLQEGVIPALVSISVN-GS-TRGRDKAQRLLMLFRE 709 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~-g~-~~~k~kA~~LL~~L~~ 709 (775)
.+|+..+.+.+..+.+.|+++.|+.++.+ ++ +.+++.|..+|.+|..
T Consensus 424 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 424 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp HHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 99999988899999999999999988876 33 4899999999999964
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.6e-21 Score=223.86 Aligned_cols=276 Identities=17% Similarity=0.101 Sum_probs=240.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|.++ +..+|..|+..|++++..++.++..+.+.|+|+.|+.+|.+ .+..++..++.+|.+++..++
T Consensus 98 g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~La~~~~ 172 (644)
T 2z6h_A 98 GGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQ 172 (644)
T ss_dssp THHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc----CCHHHHHHHHHHHHHHHhcCc
Confidence 3567788888887 89999999999999999888888899999999999999998 678888888999999987678
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
+++..+++.|+++.|+.+|+++.. ...++.+|.+|+..++++..+.+.|+++.|+.++.++ +..++..|+++|.||
T Consensus 173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 899999999999999999998764 3668999999999999999999999999999999998 999999999999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc-ccHHHHhhCCCcHHHHHHHhcCC--CHHHHHHHH
Q 004073 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDTG--ELIEQEQAV 659 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~-e~~~~i~~~~g~I~~Lv~lL~~~--s~~~~e~Av 659 (775)
+...... ....|+++.|+.+|.+.+..+++.|+++|.+|+... +++..+.. .|+++.|+.+|... .+.+++.|+
T Consensus 252 ~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~ 328 (644)
T 2z6h_A 252 SDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAI 328 (644)
T ss_dssp GGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHH
Confidence 9755332 122489999999999999999999999999999864 56777777 49999999999863 389999999
Q ss_pred HHHHHhhcCCh---HhHHHHHHCCCHHHHHHhhhcCC-hHHHHHHHHHHHHhHhc
Q 004073 660 SCLFLLCNGNE---KCCQMVLQEGVIPALVSISVNGS-TRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 660 ~~L~~Lc~~~~---~~~~~v~~~G~i~~Lv~Ll~~g~-~~~k~kA~~LL~~L~~~ 710 (775)
.+|.+|+..++ .....+.+.|+++.|+.++.+.+ ..+++.|.++|.+|...
T Consensus 329 ~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 329 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383 (644)
T ss_dssp HHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence 99999997543 23455888999999999998875 69999999999998754
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.3e-21 Score=222.46 Aligned_cols=249 Identities=13% Similarity=0.157 Sum_probs=211.8
Q ss_pred hhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh-----HHHHHH
Q 004073 461 ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS-----HGAATA 535 (775)
Q Consensus 461 nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~-----~~~Aaa 535 (775)
+|..+.++|+||.|+.++++ .++.+|+.|+++|+||+. +.++|..+++.|++++|+.+|.++.. ++.|+.
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S----~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ 523 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHN----LSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCR 523 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGG----SCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcC----CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHH
Confidence 67789999999999999998 799999999999999985 68899999999999999999988752 578999
Q ss_pred HHhcccccCCccccccc---cCchHHHHHhhcCCCC-------------HHHHHHHHHHHHHhcCCCCC-----hHHHHH
Q 004073 536 LYLNLSFLDDAKPIIGS---SHAVPFLVELCKGKTE-------------HQCKLDALHALYNLSTIPSN-----IPNLLS 594 (775)
Q Consensus 536 aL~~Ls~~~~~k~~I~~---~g~i~~LV~LL~~~~~-------------~~~k~~Al~aL~nLs~~~~n-----k~~iv~ 594 (775)
+|.+|....+....++. .|+|++|+.||..+.. ...+..|+.||.||++.++| +..+++
T Consensus 524 ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~ 603 (778)
T 3opb_A 524 ALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVS 603 (778)
T ss_dssp HHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHH
Confidence 99998876655544431 4999999999983201 12377999999999998854 788999
Q ss_pred c-CcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccH-HHHhhCC-----CcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004073 595 A-GIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGK-EEMNSTP-----GLVSGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 595 a-G~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~-~~i~~~~-----g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
. |+++.|..+|.+++..++..|+.+|.||+.+++++ ..+...+ +.++.||.++..++..+|..|+++|.+++.
T Consensus 604 ~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 604 TKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp SHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 5 99999999999889999999999999999999886 3554332 137899999999999999999999999988
Q ss_pred CChHhHHHHHHC-CCHHHHHHhhhc--CChHHHHHHHHHHHHhHhccCCC
Q 004073 668 GNEKCCQMVLQE-GVIPALVSISVN--GSTRGRDKAQRLLMLFREQRQRD 714 (775)
Q Consensus 668 ~~~~~~~~v~~~-G~i~~Lv~Ll~~--g~~~~k~kA~~LL~~L~~~~~~~ 714 (775)
.++..++.+++. ++++.|+.++.+ .++.++..+..++.+|.+....+
T Consensus 684 ~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~ 733 (778)
T 3opb_A 684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDN 733 (778)
T ss_dssp HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCST
T ss_pred CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccC
Confidence 777788888887 799999999998 89999999999999999865443
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=188.37 Aligned_cols=194 Identities=20% Similarity=0.224 Sum_probs=175.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|.+. +.++|..|++.|.+++..+++++..+.+.|+|+.|+++|.+ .++.+++.|+++|.|++.+++.
T Consensus 13 ~~~~l~~LL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 13 ELPQMVQQLNSP-DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp CHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHH
T ss_pred hhHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcH
Confidence 455667777777 99999999999999999999999999999999999999998 7899999999999999876778
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC-CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
++..+++.|++|.|+.+|++++. +..|+++|.+|+... +.+..+.+.|+++.|+++|+++ +..+++.|+++|.||+
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 89999999999999999998875 578999999999654 4555677799999999999998 9999999999999999
Q ss_pred CC-CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC
Q 004073 584 TI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS 626 (775)
Q Consensus 584 ~~-~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~ 626 (775)
.. ++++..+++.|+++.|+.++.+++..+++.|+++|.+|+++
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 87 66888899999999999999999999999999999999863
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=187.10 Aligned_cols=195 Identities=18% Similarity=0.228 Sum_probs=175.0
Q ss_pred hhCcHHHHHHHhccCCh--HHHHHHHHhcccc-cCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC-CCCC
Q 004073 513 AAGVIPLLEKMISNSNS--HGAATALYLNLSF-LDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSN 588 (775)
Q Consensus 513 ~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~-~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~-~~~n 588 (775)
..|+.+.|+.+|++++. +..|+++|.+++. .++++..+.+.|+++.|+++|.++ ++.++..|+++|.||+. ++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHH
Confidence 46789999999998876 5789999999994 566778888899999999999998 99999999999999995 5578
Q ss_pred hHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004073 589 IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 589 k~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
+..+++.|+++.|+.+|.+++..++..|+++|.||+.... .+..+.. .|+++.|+++|.++++.+++.|+++|.+||.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999999999997544 4456665 5999999999999999999999999999999
Q ss_pred CChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 668 GNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 668 ~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
.++..+..+.+.|+++.|+.++.++++.++++|..+|..|..
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 988899999999999999999999999999999999998864
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-20 Score=221.70 Aligned_cols=275 Identities=18% Similarity=0.124 Sum_probs=239.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|.++ +..+|..|+..|.+++..++.++..+.+.|+|+.|+.+|.+ .+..++..++.+|.+++..++
T Consensus 234 g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~----~~~~v~~~a~~aL~~La~~~~ 308 (780)
T 2z6g_A 234 GGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFLAITTDCLQILAYGNQ 308 (780)
T ss_dssp THHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC----CCHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc----CCHHHHHHHHHHHHHHhcCCh
Confidence 4567788888887 89999999999999999988899999999999999999987 788999999999999987778
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
+++..+++.|+++.|+.+|++++. .+.++++|.+|+....++..+...|+++.|+.+|.++ +...+..|+++|.+|
T Consensus 309 e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 309 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCC-chHHHHHHHHHHHHH
Confidence 899999999999999999998764 3568899999999888999999999999999999998 999999999999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc-ccHHHHhhCCCcHHHHHHHhcC-C-CHHHHHHHH
Q 004073 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGLATVLDT-G-ELIEQEQAV 659 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~-e~~~~i~~~~g~I~~Lv~lL~~-~-s~~~~e~Av 659 (775)
+...... ....|+++.|+.+|.+.+..+++.|+++|.+|+... +.+..+.. .|+++.|+.+|.. + .+.+++.|+
T Consensus 388 ~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~v~~~Al 464 (780)
T 2z6g_A 388 SDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAI 464 (780)
T ss_dssp HTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT-TTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHccCCHHHHHHHHH
Confidence 9765431 123579999999999999999999999999999875 55666666 5999999999985 3 358999999
Q ss_pred HHHHHhhcCChH---hHHHHHHCCCHHHHHHhhhcCCh-HHHHHHHHHHHHhHh
Q 004073 660 SCLFLLCNGNEK---CCQMVLQEGVIPALVSISVNGST-RGRDKAQRLLMLFRE 709 (775)
Q Consensus 660 ~~L~~Lc~~~~~---~~~~v~~~G~i~~Lv~Ll~~g~~-~~k~kA~~LL~~L~~ 709 (775)
.+|.+|+..+.+ .+..+...|+++.|+.++.+++. .+++.|+++|.+|..
T Consensus 465 ~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 465 CALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 999999975433 35578889999999999988875 999999999999974
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-21 Score=169.73 Aligned_cols=77 Identities=27% Similarity=0.328 Sum_probs=71.7
Q ss_pred CCCCCCCccccccccccccCceecCCC-CccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004073 275 QMPLPPEELRCPISLQLMYDPVIIASG-QTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVS 352 (775)
Q Consensus 275 ~~~~~p~~f~CPIs~~~m~dPV~~~~G-~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~i~ 352 (775)
....+|++|.||||+++|+|||+++|| |||||.||++||.. +.+||+|++++....|+||+.|+++|+.|+.+|+..
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 345689999999999999999999999 99999999999986 679999999999999999999999999999999753
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-21 Score=167.08 Aligned_cols=75 Identities=31% Similarity=0.418 Sum_probs=70.1
Q ss_pred CCCCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004073 275 QMPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNG 350 (775)
Q Consensus 275 ~~~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~ 350 (775)
....+|++|.||||+++|+|||+++|||||||.||++|+.. +.+||.|++++....|+||..|+++|+.|+.+|+
T Consensus 7 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 34568999999999999999999999999999999999985 7899999999999999999999999999999875
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
Probab=99.82 E-value=7.2e-21 Score=170.04 Aligned_cols=74 Identities=31% Similarity=0.423 Sum_probs=69.9
Q ss_pred CCCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004073 276 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNG 350 (775)
Q Consensus 276 ~~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~ 350 (775)
...+|++|.||||+++|+|||+++|||||||.||++||.. +.+||.|+++++...|+||+.|+++|+.|+.+|+
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 4467999999999999999999999999999999999984 7899999999999999999999999999999886
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-20 Score=182.53 Aligned_cols=76 Identities=34% Similarity=0.418 Sum_probs=71.4
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004073 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVS 352 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~i~ 352 (775)
..+|++|.||||+++|+|||+++|||||||.||++|+..++.+||+|+++++...|+||+.|+++|+.|+..||+.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 4679999999999999999999999999999999999875558999999999999999999999999999999874
|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-19 Score=151.71 Aligned_cols=76 Identities=63% Similarity=1.145 Sum_probs=72.1
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004073 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVS 352 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~i~ 352 (775)
..+|++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|++++....++||+.|+++|+.|..+|+++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 78 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence 3578999999999999999999999999999999999987899999999999999999999999999999999873
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.7e-18 Score=180.02 Aligned_cols=236 Identities=16% Similarity=0.092 Sum_probs=186.1
Q ss_pred hHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHH-HhchhccCCCHHHHHHH
Q 004073 426 ERYQDFLNVLNEG-----------ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLR-FLESAVCERNSYAQEIG 493 (775)
Q Consensus 426 ~~i~~Ll~~L~s~-----------~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~-lL~s~~~~~d~~~qe~A 493 (775)
+.+...+..|.+. .+.+.+..|+..|..++.+ .+|...+...|++|+|+. +|.+ .++.+++.|
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s----~~~~vr~~A 102 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEA----GAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTC----SSHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcC----CCHHHHHHH
Confidence 4555666666653 1346888999999999975 568888899999999999 9988 799999999
Q ss_pred HHHHHHhhccCCchhHHHHhhCcHHHHHHHhccC-Ch--HHHHHHHHhcccccC-CccccccccCchHHHHHhhcCCCCH
Q 004073 494 AMALFNLAVNNNRNKELMLAAGVIPLLEKMISNS-NS--HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEH 569 (775)
Q Consensus 494 ~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~-~~--~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~~~~~~ 569 (775)
+++|.|++.+++.++..+++.|++|+|+.+|+++ +. +.+|+++|.+|+.+. ..+..+...|+++.|+.+|+++ +.
T Consensus 103 a~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~ 181 (296)
T 1xqr_A 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQ 181 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CH
Confidence 9999999987778899999999999999999864 33 588999999998754 4455677789999999999998 99
Q ss_pred HHHHHHHHHHHHhcCC-CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCccc-HHHHhhCCCcHHHH----
Q 004073 570 QCKLDALHALYNLSTI-PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG-KEEMNSTPGLVSGL---- 643 (775)
Q Consensus 570 ~~k~~Al~aL~nLs~~-~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~-~~~i~~~~g~I~~L---- 643 (775)
.++..|+++|.||+.. ++.+..++++|++++|+.+|.+++..+++.|+.+|.||+..... +.........+..+
T Consensus 182 ~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~ 261 (296)
T 1xqr_A 182 KLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR 261 (296)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHH
Confidence 9999999999999864 56889999999999999999999999999999999999987322 22222110112222
Q ss_pred HHHhc-CC-CHHHHHHHHHHHHHhhc
Q 004073 644 ATVLD-TG-ELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 644 v~lL~-~~-s~~~~e~Av~~L~~Lc~ 667 (775)
.+.|. .. ..++.+.|..++-....
T Consensus 262 ~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 262 CQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHccchHHHHHHHHHHHHHHHHHcC
Confidence 22233 22 35677777777766654
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.2e-18 Score=196.83 Aligned_cols=276 Identities=14% Similarity=0.114 Sum_probs=221.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc-cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+....+...|..+ +.+.+..|++.|..++.+ ++.|..+++ .|+++.|+.+|+.. .+..++..++.+|.|++...
T Consensus 334 ~La~~~~~~L~~~-~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~---~d~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 334 QLSEIFINAISRR-IVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQ---KMTHCLYGLLVIMANLSTLP 408 (778)
T ss_dssp HHHHHHHHHTTTC-CHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTT---CCTTHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhcC-CccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCC---CCchHHHHHHHHHHHhcCCC
Confidence 4455666677776 677799999999999876 678888887 68899999999852 56778999999999997422
Q ss_pred Cc--------------------------------------hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC
Q 004073 505 NR--------------------------------------NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD 544 (775)
Q Consensus 505 ~~--------------------------------------nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~ 544 (775)
+. ++..++++|++|.|+.++.+++. ++.|+++|.+|+.+.
T Consensus 409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~ 488 (778)
T 3opb_A 409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSK 488 (778)
T ss_dssp CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG
T ss_pred cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH
Confidence 21 45667789999999999998875 688999999999999
Q ss_pred CccccccccCchHHHHHhhcCCCCHH---HHHHHHHHHHHhcCCCCChHHHH--H-cCcHHHHHHhccC--CCh------
Q 004073 545 DAKPIIGSSHAVPFLVELCKGKTEHQ---CKLDALHALYNLSTIPSNIPNLL--S-AGIISGLQSLAVP--GDP------ 610 (775)
Q Consensus 545 ~~k~~I~~~g~i~~LV~LL~~~~~~~---~k~~Al~aL~nLs~~~~nk~~iv--~-aG~V~~Lv~LL~~--~~~------ 610 (775)
++|..+.+.|++++|+.+|.++ +.. ++..|+.||.+|+...+....+- . .|+|++|++||.. +..
T Consensus 489 ~~R~~lvqqGal~~LL~lL~s~-~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~ 567 (778)
T 3opb_A 489 NFIPQLAQQGAVKIILEYLANK-QDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN 567 (778)
T ss_dssp GGHHHHHHTTHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---
T ss_pred HHHHHHHHCCCHHHHHHHHhcC-CCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccc
Confidence 9999999999999999999988 443 89999999999986554433221 1 3999999999972 211
Q ss_pred ------HHHHHHHHHHHHHhCCc-----ccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhH-HHHHH
Q 004073 611 ------MWTEKSLAVLLNLAASA-----AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCC-QMVLQ 678 (775)
Q Consensus 611 ------~i~e~al~~L~nLa~~~-----e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~-~~v~~ 678 (775)
.-+..|+.+|.|||+.+ +.|..|+.+.|+++.|..+|.++++.+|..|+.++.||+... +.. +.+..
T Consensus 568 ~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~-e~i~~k~~~ 646 (778)
T 3opb_A 568 DEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP-LTIAAKFFN 646 (778)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG-GGTGGGTSC
T ss_pred cccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHh
Confidence 12578999999999987 347778874489999999999999999999999999999855 332 23322
Q ss_pred C------CCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 679 E------GVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 679 ~------G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
. +.++.|+.|+..++.++|+.|.++|.++.
T Consensus 647 ~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 647 LENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp CSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 2 23788999999999999999999999995
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=176.62 Aligned_cols=179 Identities=15% Similarity=0.042 Sum_probs=161.6
Q ss_pred HHHHHHHHhcccccCCccccccccCchHHHHH-hhcCCCCHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccC
Q 004073 530 HGAATALYLNLSFLDDAKPIIGSSHAVPFLVE-LCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVP 607 (775)
Q Consensus 530 ~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~-LL~~~~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~ 607 (775)
+..|+..|.++....+++..+...|++|+||. +|.++ ++.++..|+++|.|++.+. .++..+++.|++++|+.+|.+
T Consensus 57 k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 57 REGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 46688888888888788888888999999999 99998 9999999999999999765 578889999999999999985
Q ss_pred -CChHHHHHHHHHHHHHhCC-cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHH
Q 004073 608 -GDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPAL 685 (775)
Q Consensus 608 -~~~~i~e~al~~L~nLa~~-~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~L 685 (775)
.+..+++.|+++|.||+.+ +.+...+... |+++.|+.+|.++++.++..|+++|.+|+.++++.+..+++.|+++.|
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~-ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRL-DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 4788999999999999975 4556677774 899999999999999999999999999999888899999999999999
Q ss_pred HHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 686 VSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 686 v~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
+.|+.+++..+++.|...|.++...
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999888754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-18 Score=183.16 Aligned_cols=77 Identities=34% Similarity=0.406 Sum_probs=72.4
Q ss_pred CCCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004073 276 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVS 352 (775)
Q Consensus 276 ~~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~i~ 352 (775)
...+|++|.||||+++|+|||+++|||||||.||++|+..++.+||+|+++++...++||..|+++|+.|+..|++.
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 45689999999999999999999999999999999999987777999999999999999999999999999999874
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-18 Score=150.49 Aligned_cols=72 Identities=21% Similarity=0.366 Sum_probs=64.6
Q ss_pred CCCccccccccccccCceecC-CCCccchHHHHHHHhcC-----CCCCCCCC--CC-CCCCCCcccHHHHHHHHHHHHHc
Q 004073 279 PPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDG-----HSTCPKTQ--QK-LPHLCLTPNYCVKGLIASWCEMN 349 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~~~-----~~~CP~t~--~~-l~~~~l~pn~~l~~~i~~~~~~~ 349 (775)
.+++|.||||+++|+|||+++ |||||||.||++||..+ ..+||+|+ +. +....|+||..|+++|+.|+..+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 478999999999999999996 99999999999999753 46899954 44 88899999999999999999887
Q ss_pred C
Q 004073 350 G 350 (775)
Q Consensus 350 ~ 350 (775)
+
T Consensus 84 ~ 84 (94)
T 2yu4_A 84 H 84 (94)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-16 Score=183.93 Aligned_cols=74 Identities=26% Similarity=0.310 Sum_probs=70.1
Q ss_pred CCCCCCccccccccccccCceecCCC-CccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004073 276 MPLPPEELRCPISLQLMYDPVIIASG-QTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNG 350 (775)
Q Consensus 276 ~~~~p~~f~CPIs~~~m~dPV~~~~G-~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~ 350 (775)
..++|++|+|||++++|+|||++++| +||||.+|++|+.. +.+||.|+++|++.+++||++||+.|++||..|+
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHH
Confidence 35789999999999999999999997 79999999999987 6799999999999999999999999999999986
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-16 Score=127.60 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=50.3
Q ss_pred ccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHH
Q 004073 282 ELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYC 337 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~ 337 (775)
.|.||||+++|+|||++ +|||||||.+|++|+.. +.+||+|+++|...+|+||+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECcc
Confidence 69999999999999999 99999999999999986 457999999999999999853
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.2e-15 Score=129.52 Aligned_cols=75 Identities=28% Similarity=0.468 Sum_probs=68.3
Q ss_pred CCCCCccccccccccccCceecC-CCCccchHHHHHHHhc-CCCCCCCCCCCC-CCCCCcccHHHHHHHHHHHHHcCC
Q 004073 277 PLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSD-GHSTCPKTQQKL-PHLCLTPNYCVKGLIASWCEMNGV 351 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~~-~~~~CP~t~~~l-~~~~l~pn~~l~~~i~~~~~~~~i 351 (775)
..++++|.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++ ....+.||+.|+++|+.|...+++
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 45789999999999999999999 9999999999999974 457999999998 567899999999999999998875
|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-14 Score=147.92 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=64.7
Q ss_pred CCCCccccccccccccCceec-CCCCccchHHHHHHHhc-CCCCCCC--CCCCCCCCCCcccHHHHHHHHHHHHH
Q 004073 278 LPPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSD-GHSTCPK--TQQKLPHLCLTPNYCVKGLIASWCEM 348 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~-~~~~CP~--t~~~l~~~~l~pn~~l~~~i~~~~~~ 348 (775)
....+|.||||+++|+|||++ .|||+|||.||.+||.. +..+||+ |++++....|+||..|+++|+.|..+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 346899999999999999985 99999999999999986 4568999 99999999999999999999999775
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-13 Score=128.71 Aligned_cols=69 Identities=13% Similarity=0.333 Sum_probs=63.7
Q ss_pred CCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHH
Q 004073 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH-LCLTPNYCVKGLIASWCE 347 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~-~~l~pn~~l~~~i~~~~~ 347 (775)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++.. ..+.||+.|+++|+.|..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 467899999999999999999999999999999999767799999999987 789999999999988854
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-13 Score=131.48 Aligned_cols=69 Identities=17% Similarity=0.369 Sum_probs=64.0
Q ss_pred CCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCC-CCcccHHHHHHHHHHHH
Q 004073 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL-CLTPNYCVKGLIASWCE 347 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~-~l~pn~~l~~~i~~~~~ 347 (775)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++... .+.||..|+++|+.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999997777999999999887 89999999999998863
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-11 Score=142.54 Aligned_cols=275 Identities=15% Similarity=0.174 Sum_probs=211.7
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 425 FERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 425 ~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
.+++..|+.+|.+.--.+.|+.|+..|+.++++ .|..+ ..++++.|+..|+... .|.++...++.+|+++-..+
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~V-g~~~l~~li~~L~~d~--~D~e~v~~~LetL~~l~~~~ 93 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEV-GIQAMEHLIHVLQTDR--SDSEIIGYALDTLYNIISND 93 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHH-HHHTHHHHHHHHHSCT--TCHHHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHh-hhhhHHHHHHHHhccc--ccHHHHHHHHHHHHHHhCCC
Confidence 378999999998875689999999999999875 34444 3678999999998743 68888899999998875433
Q ss_pred Cc-----------------hhHHH-HhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC--Cccccccc-cCchHHHHH
Q 004073 505 NR-----------------NKELM-LAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD--DAKPIIGS-SHAVPFLVE 561 (775)
Q Consensus 505 ~~-----------------nk~~i-~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~--~~k~~I~~-~g~i~~LV~ 561 (775)
+. +...+ .+.+.|+.|+.+|++.+. +-.++..|..|+... .++..|.. .++|+.||.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173 (651)
T ss_dssp --------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence 22 11223 346799999999998775 567888888777653 36777774 699999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHH-cCcHHHHHHhccCC----ChHHHHHHHHHHHHHhCCcc-cHHHHhh
Q 004073 562 LCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS-AGIISGLQSLAVPG----DPMWTEKSLAVLLNLAASAA-GKEEMNS 635 (775)
Q Consensus 562 LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~-aG~V~~Lv~LL~~~----~~~i~e~al~~L~nLa~~~e-~~~~i~~ 635 (775)
+|++. ...++-.|+..|.+|+.+..+..+++. .|+++.|+.++... ...+...|+.+|.||..... ++..+.+
T Consensus 174 lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE 252 (651)
T 3grl_A 174 LLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE 252 (651)
T ss_dssp GGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99998 899999999999999998888777777 69999999999653 34778999999999998654 6777777
Q ss_pred CCCcHHHHHHHhcCCCH------HHHHH---HHHHHHHhhcC------ChHhHHHHHHCCCHHHHHHhhhcC--ChHHHH
Q 004073 636 TPGLVSGLATVLDTGEL------IEQEQ---AVSCLFLLCNG------NEKCCQMVLQEGVIPALVSISVNG--STRGRD 698 (775)
Q Consensus 636 ~~g~I~~Lv~lL~~~s~------~~~e~---Av~~L~~Lc~~------~~~~~~~v~~~G~i~~Lv~Ll~~g--~~~~k~ 698 (775)
. |+++.|..++..+.+ ....+ ++.++.-|+.. ...+...+.+.|+++.|+.++... ...++.
T Consensus 253 t-~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~ 331 (651)
T 3grl_A 253 G-SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILT 331 (651)
T ss_dssp T-TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHH
T ss_pred c-CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHH
Confidence 5 999999999975322 12333 56666677765 235677889999999999887754 566777
Q ss_pred HHHHHHHHh
Q 004073 699 KAQRLLMLF 707 (775)
Q Consensus 699 kA~~LL~~L 707 (775)
.|...+-.+
T Consensus 332 ~Al~tla~~ 340 (651)
T 3grl_A 332 ETINTVSEV 340 (651)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666443
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-12 Score=116.69 Aligned_cols=70 Identities=26% Similarity=0.412 Sum_probs=64.7
Q ss_pred CCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004073 279 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 349 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 349 (775)
+++++.||||++.|.|||++ +|||+||+.||.+|+.. +.+||.|++++....+.||+.++++|+.|....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 45789999999999999998 89999999999999985 579999999998889999999999999998765
|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-13 Score=116.87 Aligned_cols=66 Identities=26% Similarity=0.492 Sum_probs=58.1
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhcC------CCCCCCCCCCCCCCCCcccHHHHHHH
Q 004073 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDG------HSTCPKTQQKLPHLCLTPNYCVKGLI 342 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~------~~~CP~t~~~l~~~~l~pn~~l~~~i 342 (775)
..+.+++.||||++.|.|||+++|||+||+.||.+|+... ...||.|++++....+.||+.|+++|
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 3467899999999999999999999999999999999753 67899999999988999998776543
|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.6e-13 Score=113.24 Aligned_cols=66 Identities=30% Similarity=0.612 Sum_probs=58.3
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhc-----CCCCCCCCCCCCCCCCCcccHHHHHHH
Q 004073 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD-----GHSTCPKTQQKLPHLCLTPNYCVKGLI 342 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~-----~~~~CP~t~~~l~~~~l~pn~~l~~~i 342 (775)
..+.++|.||||++.|.+||+++|||+||+.||.+|+.. +...||.|++++....+.||+.|+++|
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 346789999999999999999999999999999999976 367899999999988999998766543
|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-12 Score=116.82 Aligned_cols=67 Identities=13% Similarity=0.327 Sum_probs=61.1
Q ss_pred CCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCC----CCcccHHHHHHHHHHH
Q 004073 279 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHL----CLTPNYCVKGLIASWC 346 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~----~l~pn~~l~~~i~~~~ 346 (775)
+++++.||||+++|.|||++ +|||+||+.||.+|+.. +.+||.|++++... .+.+|..+.++++.|.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 56799999999999999998 99999999999999986 48999999999865 7899999999998774
|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-12 Score=119.61 Aligned_cols=70 Identities=16% Similarity=0.319 Sum_probs=62.7
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC-------CCCcccHHHHHHHHHHHH
Q 004073 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH-------LCLTPNYCVKGLIASWCE 347 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~-------~~l~pn~~l~~~i~~~~~ 347 (775)
...++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|++++.. ..+.+|..|..+|+.|..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 3457899999999999999999999999999999998878899999999864 577889999999998853
|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-12 Score=111.73 Aligned_cols=66 Identities=26% Similarity=0.552 Sum_probs=58.3
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhc-----CCCCCCCCCCCCCCCCCcccHHHHHHH
Q 004073 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD-----GHSTCPKTQQKLPHLCLTPNYCVKGLI 342 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~-----~~~~CP~t~~~l~~~~l~pn~~l~~~i 342 (775)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|++++....+.||+.|+++|
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 356789999999999999999999999999999999875 467899999999988999998766543
|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-12 Score=114.53 Aligned_cols=71 Identities=18% Similarity=0.348 Sum_probs=64.5
Q ss_pred CCCccccccccccccCcee-cCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004073 279 PPEELRCPISLQLMYDPVI-IASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 349 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~-~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 349 (775)
+.++|.||||+++|.|||+ ++|||+||+.||.+|+.....+||.|+.++....+++|+.+..+++..-...
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 4578999999999999999 9999999999999999876689999999999999999999999888776654
|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-12 Score=117.72 Aligned_cols=68 Identities=16% Similarity=0.310 Sum_probs=63.2
Q ss_pred CCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 004073 279 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMN 349 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~ 349 (775)
+.++|.||||+++|.|||++ +|||+||+.||.+|+. ..||.|++++....+.||+.|+++++.|....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 46789999999999999999 9999999999999997 78999999998889999999999999987764
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-12 Score=117.41 Aligned_cols=69 Identities=28% Similarity=0.449 Sum_probs=63.1
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 004073 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASW 345 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~ 345 (775)
..++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.||..+++.|..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 356789999999999999999999999999999999987666999999999988899999999988764
|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-12 Score=109.50 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=55.0
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 004073 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLI 342 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i 342 (775)
...+++.||||++.|.|||+++|||+||+.||.+|+.. ..+||.|++++. ..+.||..+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~ 73 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKL 73 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHH
Confidence 45678999999999999999999999999999999975 679999999996 7788996665544
|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.6e-12 Score=104.56 Aligned_cols=60 Identities=32% Similarity=0.483 Sum_probs=51.0
Q ss_pred CCCCCCccccccccccccCceecC-CCCccchHHHHHHHhc-CCCCCCCCCCCCC-CCCCccc
Q 004073 276 MPLPPEELRCPISLQLMYDPVIIA-SGQTYERICIEKWLSD-GHSTCPKTQQKLP-HLCLTPN 335 (775)
Q Consensus 276 ~~~~p~~f~CPIs~~~m~dPV~~~-~G~ty~r~~I~~w~~~-~~~~CP~t~~~l~-~~~l~pn 335 (775)
...+++++.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++. ...+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 345789999999999999999999 9999999999999985 4579999999854 4456665
|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
Probab=99.22 E-value=3.3e-12 Score=124.60 Aligned_cols=70 Identities=26% Similarity=0.438 Sum_probs=62.7
Q ss_pred CCCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHH
Q 004073 278 LPPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPH-LCLTPNYCVKGLIASWCE 347 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~-~~l~pn~~l~~~i~~~~~ 347 (775)
.+.+++.||||++.|.|||++ +|||+||+.||.+|+..++.+||.|+.++.. ..+.||..|.++|..|..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 345789999999999999998 9999999999999999878899999999854 579999999999998844
|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=101.16 Aligned_cols=56 Identities=14% Similarity=0.337 Sum_probs=49.9
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 004073 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCL 332 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l 332 (775)
..+++++.||||++.|.+||+++|||+||+.||.+|+..++.+||.|++++....+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 34578999999999999999999999999999999998677899999999876543
|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-11 Score=101.32 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=52.8
Q ss_pred CCCCCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004073 276 MPLPPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 276 ~~~~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn 335 (775)
...+.+++.||||++.|.|||++ +|||+||+.||.+|+.. +.+||.|++++....+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 34567899999999999999998 99999999999999976 6799999999988887776
|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-11 Score=112.72 Aligned_cols=70 Identities=24% Similarity=0.511 Sum_probs=61.2
Q ss_pred CCCccccccccccccCceecCCCCccchHHHHHHHhc--CCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 004073 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEM 348 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~--~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~ 348 (775)
+.+++.||||++.|.|||+++|||+||+.||.+|+.. +..+||.|++++....+.+|..+..+++.+...
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999985 346899999999999999998877777776543
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-09 Score=123.31 Aligned_cols=278 Identities=17% Similarity=0.148 Sum_probs=206.7
Q ss_pred hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChh-----------------hh-HHhhccCchHHHHHHhchhccCCC
Q 004073 426 ERYQDFLNVLNEG-ENLGQKCNIVEQIRLLLKDDEE-----------------AR-VFTGANGFVVALLRFLESAVCERN 486 (775)
Q Consensus 426 ~~i~~Ll~~L~s~-~~~~~q~~Al~~L~~Lak~~~~-----------------nr-~~i~~~G~I~~Lv~lL~s~~~~~d 486 (775)
.++..|+..|... ++.+.-..+++.|.++...+++ +. ..+.+.+.|+.|+.+|.+ .|
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~----~d 135 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE----FD 135 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC----CC
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC----cc
Confidence 4567777777654 4778888888888877664432 11 224557999999999988 89
Q ss_pred HHHHHHHHHHHHHhhccCCc-hhHHHHh-hCcHHHHHHHhccCCh--HHHHHHHHhcccccCCc-cccccccCchHHHHH
Q 004073 487 SYAQEIGAMALFNLAVNNNR-NKELMLA-AGVIPLLEKMISNSNS--HGAATALYLNLSFLDDA-KPIIGSSHAVPFLVE 561 (775)
Q Consensus 487 ~~~qe~A~~aL~nLs~~~~~-nk~~i~~-~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~-k~~I~~~g~i~~LV~ 561 (775)
..++..++.+|..|+.+... ++..|.. .++++.|+.+|+.... +..|+.+|.+|+.+... +..++-.|+++.|+.
T Consensus 136 f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~ 215 (651)
T 3grl_A 136 FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLD 215 (651)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHH
Confidence 99999999999999865554 6777774 5999999999998765 45688888888876654 555555799999999
Q ss_pred hhcCCC---CHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccCCCh-------HH--HHHHHHHHHHHhCCc-
Q 004073 562 LCKGKT---EHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDP-------MW--TEKSLAVLLNLAASA- 627 (775)
Q Consensus 562 LL~~~~---~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~~~~-------~i--~e~al~~L~nLa~~~- 627 (775)
++.... ...+..+++..|.||..+. .|+..+.+.|+++.|..+|..++. .+ ...++.++.-|+...
T Consensus 216 Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~ 295 (651)
T 3grl_A 216 IITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNN 295 (651)
T ss_dssp HHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 998641 2368899999999999765 599999999999999999864321 11 123777777777642
Q ss_pred ------ccHHHHhhCCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCChHhHHHHHHCC-----CHHHHHH----hhh
Q 004073 628 ------AGKEEMNSTPGLVSGLATVLDTG--ELIEQEQAVSCLFLLCNGNEKCCQMVLQEG-----VIPALVS----ISV 690 (775)
Q Consensus 628 ------e~~~~i~~~~g~I~~Lv~lL~~~--s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G-----~i~~Lv~----Ll~ 690 (775)
.++.++..+ |++..|++++... +..++..|+.++..+.++++.....+.+.. ..|.++. ++.
T Consensus 296 ~~~~t~~nQ~~~~~~-g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~ 374 (651)
T 3grl_A 296 PPGATSSCQKAMFQC-GLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVN 374 (651)
T ss_dssp CHHHHHHHHHHHHHT-THHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHC-CCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhc
Confidence 245677775 9999999998854 788999999999999999987777776542 2333433 333
Q ss_pred c-CChHHHHHHHHHHHHhH
Q 004073 691 N-GSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 691 ~-g~~~~k~kA~~LL~~L~ 708 (775)
+ .....|-.|...++.+-
T Consensus 375 ~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 375 ERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp TTSCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 3 35677777777776664
|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.2e-11 Score=99.01 Aligned_cols=56 Identities=27% Similarity=0.527 Sum_probs=49.3
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhc--CCCCCCCCCCCCCCCCC
Q 004073 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKTQQKLPHLCL 332 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~--~~~~CP~t~~~l~~~~l 332 (775)
..+.+++.||||++.|.|||+++|||+||+.||.+|+.. +...||.|++++....+
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 356789999999999999999999999999999999973 56789999999876544
|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-11 Score=116.09 Aligned_cols=64 Identities=19% Similarity=0.486 Sum_probs=53.1
Q ss_pred CCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 004073 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWC 346 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~ 346 (775)
.++|.||||++.|.|||+++|||+||+.||.+|+.. +.+||.|++++... .+|+.+...|..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 457899999999999999999999999999999975 67899999998643 34566666666554
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-09 Score=106.01 Aligned_cols=190 Identities=17% Similarity=0.135 Sum_probs=154.7
Q ss_pred ccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC
Q 004073 467 ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD 544 (775)
Q Consensus 467 ~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~ 544 (775)
..+.++.|+.+|.+ .+..++..|+.+|..+. . .++++.|+.+|.+++. +..|+.+|..+.
T Consensus 17 ~~~~~~~L~~~L~~----~~~~vR~~A~~~L~~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQD----DSYYVRRAAAYALGKIG--D---------ERAVEPLIKALKDEDAWVRRAAADALGQIG--- 78 (211)
T ss_dssp CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---
T ss_pred CHhHHHHHHHHHcC----CCHHHHHHHHHHHHHhC--C---------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---
Confidence 46789999999987 79999999999998873 1 3688999999998775 456777776543
Q ss_pred CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 004073 545 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 624 (775)
Q Consensus 545 ~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa 624 (775)
..++++.|+.+|.+. ++.++..|+.+|.++.. .++++.|+.+|.+++..++..|+.+|.++.
T Consensus 79 -------~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 79 -------DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp -------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred -------CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 357899999999998 99999999999999853 358899999999999999999999999884
Q ss_pred CCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHH
Q 004073 625 ASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704 (775)
Q Consensus 625 ~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL 704 (775)
. ...++.|+.++.+.++.++..|+.+|..+.. ..+++.|..++.++++.+|..|...|
T Consensus 141 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL 198 (211)
T 3ltm_A 141 D-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL 198 (211)
T ss_dssp C-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2 3578999999999999999999999999853 23677888999999999999999999
Q ss_pred HHhHhccCCC
Q 004073 705 MLFREQRQRD 714 (775)
Q Consensus 705 ~~L~~~~~~~ 714 (775)
..+.....+.
T Consensus 199 ~~~~~~~~~~ 208 (211)
T 3ltm_A 199 ETHKSFNHHH 208 (211)
T ss_dssp HC--------
T ss_pred HhcCCCCCCC
Confidence 8887665443
|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=5.8e-11 Score=97.02 Aligned_cols=55 Identities=18% Similarity=0.436 Sum_probs=50.4
Q ss_pred Cccccccccc-cccCc----eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004073 281 EELRCPISLQ-LMYDP----VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 281 ~~f~CPIs~~-~m~dP----V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn 335 (775)
+++.||||++ .+.+| |+++|||+||+.||.+|+..+...||.|++++....++|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 5789999999999999998777899999999988888876
|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.7e-11 Score=116.97 Aligned_cols=68 Identities=26% Similarity=0.419 Sum_probs=62.6
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 004073 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASW 345 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~ 345 (775)
.++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++....+.||..+.+.|..+
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 57899999999999999999999999999999999987667999999999988899999999888753
|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=6.4e-11 Score=108.43 Aligned_cols=66 Identities=24% Similarity=0.355 Sum_probs=56.6
Q ss_pred CCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCc-ccHHHHHHHHH
Q 004073 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLT-PNYCVKGLIAS 344 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~-pn~~l~~~i~~ 344 (775)
++++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|++++....+. ++..+.+++..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 4578999999999999999999999999999999987678999999999877665 45666666643
|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.1e-10 Score=93.05 Aligned_cols=47 Identities=32% Similarity=0.604 Sum_probs=42.4
Q ss_pred CCCCCccccccccccccCceecCCCCccchHHHHHHHhc--CCCCCCCC
Q 004073 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKT 323 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~--~~~~CP~t 323 (775)
..+.+++.||||++.|.|||+++|||+||+.||.+|+.. +..+||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 356789999999999999999999999999999999974 46789987
|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-11 Score=115.79 Aligned_cols=66 Identities=15% Similarity=0.295 Sum_probs=56.8
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC---------CCCcccHHHHHHHH
Q 004073 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH---------LCLTPNYCVKGLIA 343 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~---------~~l~pn~~l~~~i~ 343 (775)
.+.++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++.. ..+.|+..+++.|.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 4678999999999999999999999999999999998777799999986532 24568888887775
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.03 E-value=8.3e-09 Score=108.09 Aligned_cols=224 Identities=12% Similarity=0.070 Sum_probs=163.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..|+..|.++ +..+|..|+..|..+. ..++++.|+.+|.+ .++.++..|+.+|..+.. ..
T Consensus 23 ~~i~~L~~~L~~~-~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~d----~~~~vR~~A~~aL~~l~~-~~ 85 (280)
T 1oyz_A 23 LNDDELFRLLDDH-NSLKRISSARVLQLRG-----------GQDAVRLAIEFCSD----KNYIRRDIGAFILGQIKI-CK 85 (280)
T ss_dssp SCHHHHHHHTTCS-SHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHTC----SSHHHHHHHHHHHHHSCC-CT
T ss_pred hhHHHHHHHHHcC-CHHHHHHHHHHHHccC-----------CchHHHHHHHHHcC----CCHHHHHHHHHHHHHhcc-cc
Confidence 3467788888887 8999999999998775 23578899999987 789999999999999852 22
Q ss_pred chhHHHHhhCcHHHHHH-HhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 506 RNKELMLAAGVIPLLEK-MISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~-lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.... ..++.|.. ++...+. +..|+.+|..+..... .....+++.|+.+|.++ ++.++..|+.+|.++
T Consensus 86 ~~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~-~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 86 KCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDK-STNVRRATAFAISVI 155 (280)
T ss_dssp TTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS-CHHHHHHHHHHHHTC
T ss_pred ccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCC-CHHHHHHHHHHHHhc
Confidence 1111 13444443 3444543 4668888877653221 11235789999999988 999999999999887
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004073 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
.. .++++.|+.++.+.+..++..|+.+|..+... .+..++.|+.++.+.++.++..|+.+|
T Consensus 156 ~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 156 ND----------KATIPLLINLLKDPNGDVRNWAAFAININKYD---------NSDIRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC---------cHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 43 35899999999988899999999999887422 124678889999888999999999999
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 663 FLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
..+.. ..+++.|+.++.+.+ ++..|...|..+.
T Consensus 217 ~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 217 SYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp HHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred HHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 88762 346777877776644 6677777666553
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-08 Score=102.51 Aligned_cols=185 Identities=15% Similarity=0.163 Sum_probs=152.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
+.+..|+..|.++ ++.+|..|+..|..+.. .++++.|+.+|.+ .+..++..|+.+|..+. +
T Consensus 19 ~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~--~- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKD----EDAWVRRAAADALGQIG--D- 79 (211)
T ss_dssp GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC----SCHHHHHHHHHHHHHHC--C-
T ss_pred hHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcC----CCHHHHHHHHHHHHhhC--C-
Confidence 5677888889887 99999999999987542 4789999999987 79999999999999883 1
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
.++++.|+.+|.+.+. +..|+.+|..+. ..++++.|+.+|.++ ++.++..|+.+|.++.
T Consensus 80 --------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 80 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDE-DWFVRIAAAFALGEIG 140 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC
Confidence 3578999999988775 466777776553 346899999999998 9999999999999984
Q ss_pred CCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004073 584 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 584 ~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
. ..+++.|+.++.+.+..++..|+.+|..+.. ..+++.|..++.+.++.++..|+.+|.
T Consensus 141 ~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 141 D----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 199 (211)
T ss_dssp C----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2 3588999999999999999999999998843 356888999999999999999999999
Q ss_pred HhhcCC
Q 004073 664 LLCNGN 669 (775)
Q Consensus 664 ~Lc~~~ 669 (775)
.+....
T Consensus 200 ~~~~~~ 205 (211)
T 3ltm_A 200 THKSFN 205 (211)
T ss_dssp C-----
T ss_pred hcCCCC
Confidence 887654
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-08 Score=101.35 Aligned_cols=185 Identities=17% Similarity=0.139 Sum_probs=154.3
Q ss_pred ccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC
Q 004073 467 ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD 544 (775)
Q Consensus 467 ~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~ 544 (775)
..+..+.++.+|.+ .++.++..|+.+|..+. . .++++.|+.+|.+++. +..|+.+|..+.
T Consensus 12 ~~~~~~~~i~~L~~----~~~~vr~~A~~~L~~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--- 73 (201)
T 3ltj_A 12 DPEKVEMYIKNLQD----DSYYVRRAAAYALGKIG--D---------ERAVEPLIKALKDEDAWVRRAAADALGQIG--- 73 (201)
T ss_dssp CHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---
T ss_pred CCcchHHHHHHhcC----CCHHHHHHHHHHHHhcC--C---------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC---
Confidence 35778899999988 89999999999998873 1 3578999999987775 455777776542
Q ss_pred CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 004073 545 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 624 (775)
Q Consensus 545 ~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa 624 (775)
..++++.|+.+|.+. ++.++..|+++|.++.. ..+++.|+.+|.+.+..++..|+.+|..+.
T Consensus 74 -------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 74 -------DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp -------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred -------CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 347899999999998 99999999999999843 358899999999999999999999999885
Q ss_pred CCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHH
Q 004073 625 ASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLL 704 (775)
Q Consensus 625 ~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL 704 (775)
. ...++.|+.++.+.++.++..|+.+|..+.. ..+++.|..++.+.++.+|..|...|
T Consensus 136 ~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL 193 (201)
T 3ltj_A 136 D-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL 193 (201)
T ss_dssp C-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3 3678999999999999999999999999832 12678888899999999999999999
Q ss_pred HHhHh
Q 004073 705 MLFRE 709 (775)
Q Consensus 705 ~~L~~ 709 (775)
..+..
T Consensus 194 ~~l~~ 198 (201)
T 3ltj_A 194 ETHKS 198 (201)
T ss_dssp HHCC-
T ss_pred HHHHh
Confidence 87753
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.3e-08 Score=99.37 Aligned_cols=182 Identities=14% Similarity=0.167 Sum_probs=152.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
.....++..|.++ ++.+|..|+..|..+.. .++++.|+.+|.+ .++.++..|+.+|..+. +
T Consensus 14 ~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~--~- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKD----EDAWVRRAAADALGQIG--D- 74 (201)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHC--C-
T ss_pred cchHHHHHHhcCC-CHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcC----CCHHHHHHHHHHHHhhC--C-
Confidence 5677888899888 99999999999986542 3678999999987 78999999999998873 1
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
.++++.|+.+|.+.+. +..|+.+|..+. ...+++.|+.+|.+. ++.++..|+++|.++.
T Consensus 75 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 75 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDE-DWFVRIAAAFALGEIG 135 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 2578999999988775 466777777543 346899999999988 9999999999999984
Q ss_pred CCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004073 584 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 584 ~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
. .++++.|+.++.+.+..++..|+.+|..+.. ..+++.|..++.+.++.++..|+.+|.
T Consensus 136 ~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 136 D----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp C----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3 4689999999999999999999999998832 246888999999999999999999998
Q ss_pred Hhh
Q 004073 664 LLC 666 (775)
Q Consensus 664 ~Lc 666 (775)
.+-
T Consensus 195 ~l~ 197 (201)
T 3ltj_A 195 THK 197 (201)
T ss_dssp HCC
T ss_pred HHH
Confidence 764
|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-10 Score=96.33 Aligned_cols=57 Identities=26% Similarity=0.583 Sum_probs=51.5
Q ss_pred CCCccccccccccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 004073 279 PPEELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 336 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dP-------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~ 336 (775)
..+++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++....+.|++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence 45789999999999999 89999999999999999986 46999999999988888764
|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.2e-10 Score=88.85 Aligned_cols=46 Identities=30% Similarity=0.728 Sum_probs=41.8
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhc--CCCCCCCC
Q 004073 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKT 323 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~--~~~~CP~t 323 (775)
.+.+++.||||++.|.+||+++|||+||+.||.+|+.. ++.+||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45688999999999999999999999999999999864 57889987
|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=3e-10 Score=94.49 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=45.4
Q ss_pred CCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
..+++.||||++.|.|||+++|||+||+.||.+|+.. +.+||.|++++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 4578999999999999999999999999999999986 4799999998764
|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-09 Score=94.87 Aligned_cols=54 Identities=28% Similarity=0.508 Sum_probs=47.7
Q ss_pred CCCCCccccccccccccC----ceecCCCCccchHHHHHHHhcC--CCCCCCCCCCCCCC
Q 004073 277 PLPPEELRCPISLQLMYD----PVIIASGQTYERICIEKWLSDG--HSTCPKTQQKLPHL 330 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~d----PV~~~~G~ty~r~~I~~w~~~~--~~~CP~t~~~l~~~ 330 (775)
..+.+++.||||++.|.+ |++++|||+||+.||.+|+... ..+||.|++++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 346788999999999999 9999999999999999999853 57899999987653
|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=8.1e-10 Score=90.91 Aligned_cols=52 Identities=25% Similarity=0.560 Sum_probs=46.6
Q ss_pred CCCCCccccccccccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 277 PLPPEELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dP-------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
...++++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 3457899999999999999 89999999999999999986 6799999998764
|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.9e-10 Score=91.42 Aligned_cols=55 Identities=25% Similarity=0.550 Sum_probs=49.5
Q ss_pred CccccccccccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 004073 281 EELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 336 (775)
Q Consensus 281 ~~f~CPIs~~~m~dP-------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~ 336 (775)
+++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++....+.|++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeeee
Confidence 478999999999998 88999999999999999986 67999999999888877753
|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.1e-09 Score=90.92 Aligned_cols=57 Identities=21% Similarity=0.435 Sum_probs=49.0
Q ss_pred CCCCccccccccccccCc---eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004073 278 LPPEELRCPISLQLMYDP---VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dP---V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn 335 (775)
...+++.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 445789999999999987 44699999999999999975 5799999999988777665
|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-09 Score=90.11 Aligned_cols=55 Identities=18% Similarity=0.427 Sum_probs=47.3
Q ss_pred CCCCccccccccccc--cCceecC--CCCccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 004073 278 LPPEELRCPISLQLM--YDPVIIA--SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCL 332 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m--~dPV~~~--~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l 332 (775)
...+++.||||++.| .||++.+ |||+||+.||.+|+..+...||.||+++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456889999999999 5777776 999999999999998778899999999876543
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.84 E-value=7.3e-08 Score=100.87 Aligned_cols=199 Identities=13% Similarity=0.029 Sum_probs=152.3
Q ss_pred hhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccc
Q 004073 465 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSF 542 (775)
Q Consensus 465 i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~ 542 (775)
+...+.++.|+..|.+ .++.++..|+.+|.++. ..++++.|+.+|.+.+. +..|+.+|..+..
T Consensus 19 ~~~~~~i~~L~~~L~~----~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDD----HNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKI 83 (280)
T ss_dssp HHHTSCHHHHHHHTTC----SSHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC
T ss_pred HHHHhhHHHHHHHHHc----CCHHHHHHHHHHHHccC-----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 4456889999999987 78999999999999984 13578999999998775 4668888876653
Q ss_pred cCCccccccccCchHHHHH-hhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHH
Q 004073 543 LDDAKPIIGSSHAVPFLVE-LCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLL 621 (775)
Q Consensus 543 ~~~~k~~I~~~g~i~~LV~-LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~ 621 (775)
.... + ...++.|.. ++.+. ++.++..|+++|.++...... ....+++.|+.++.+++..++..|+.+|.
T Consensus 84 ~~~~---~--~~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 84 CKKC---E--DNVFNILNNMALNDK-SACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAIS 153 (280)
T ss_dssp CTTT---H--HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cccc---c--hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 2211 0 112334442 34566 899999999999999632211 12346889999999999999999999998
Q ss_pred HHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHH
Q 004073 622 NLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQ 701 (775)
Q Consensus 622 nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~ 701 (775)
++.. ++.++.|+.++.+.++.++..|+.+|..+...++ .+++.|+.++.+.++.+|..|.
T Consensus 154 ~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~ 213 (280)
T 1oyz_A 154 VIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAI 213 (280)
T ss_dssp TC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHH
T ss_pred hcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHH
Confidence 7643 3589999999999999999999999999864442 3578889999999999999999
Q ss_pred HHHHHhH
Q 004073 702 RLLMLFR 708 (775)
Q Consensus 702 ~LL~~L~ 708 (775)
..|..+.
T Consensus 214 ~aL~~~~ 220 (280)
T 1oyz_A 214 IGLSYRK 220 (280)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9988765
|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=6.4e-09 Score=86.00 Aligned_cols=52 Identities=23% Similarity=0.527 Sum_probs=46.3
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 004073 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC 331 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~ 331 (775)
...+++.||||++.+.+ ++++|||+|++.||.+|+. .+.+||.|++++....
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 45678999999999999 9999999999999999998 4789999998886543
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.7e-09 Score=96.31 Aligned_cols=55 Identities=24% Similarity=0.512 Sum_probs=49.8
Q ss_pred CCccccccccccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004073 280 PEELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 280 p~~f~CPIs~~~m~dP-------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn 335 (775)
++++.||||++.|.|| |+++|||+|++.||.+|+.. +.+||.|++++....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 5789999999999999 99999999999999999986 5699999999988777665
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.9e-08 Score=118.62 Aligned_cols=275 Identities=13% Similarity=0.116 Sum_probs=184.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..++..+.+. +.++|..|+..|..+.......-. -.-.++++.|+.++.+ .+..++..|+.+|.+++....
T Consensus 174 ~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~~~~~~-~~~~~~l~~l~~~~~d----~~~~vr~~a~~~L~~l~~~~~ 247 (852)
T 4fdd_A 174 IMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRTQALM-LHIDSFIENLFALAGD----EEPEVRKNVCRALVMLLEVRM 247 (852)
T ss_dssp HHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTTCHHHH-TSHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHhCH
Confidence 3445556666666 899999999999888765432110 0113577888887776 789999999999999975322
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccc--cCchHHHHHhh-----------cC--C--
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELC-----------KG--K-- 566 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~--~g~i~~LV~LL-----------~~--~-- 566 (775)
..-...+ .++++.++.++.+.+. +..|+..+..++.....+..+.. ...+|.|+..+ .+ .
T Consensus 248 ~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~ 326 (852)
T 4fdd_A 248 DRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS 326 (852)
T ss_dssp HHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred HHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence 1111111 2578888888877654 46677777777755433332221 25677777776 22 0
Q ss_pred ------CCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcH
Q 004073 567 ------TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLV 640 (775)
Q Consensus 567 ------~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I 640 (775)
.+..+++.|+.+|..|+...+. .++ ..+++.|.+++.+.+...++.|+.+|.+++........-.. ++.+
T Consensus 327 ~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l 402 (852)
T 4fdd_A 327 GGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELI 402 (852)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHH
Confidence 1234688899999888753321 122 23667777788888899999999999999986542211111 3678
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 641 SGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 641 ~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
+.|+..+.+.++.++..|+.+|..++...........-.++++.|+..+.+.++++|+.|...|..+.+..
T Consensus 403 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 403 PHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998632111001111246788888888889999999999998887553
|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.9e-08 Score=82.96 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=45.1
Q ss_pred CCCCCccccccccccccCceec---CCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 277 PLPPEELRCPISLQLMYDPVII---ASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 277 ~~~p~~f~CPIs~~~m~dPV~~---~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
....++..||||++.|.+|+.+ +|||+|++.||.+|+.. +.+||.|++++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 3456789999999999988766 99999999999999986 4599999998754
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.65 E-value=9.5e-08 Score=113.48 Aligned_cols=190 Identities=15% Similarity=0.086 Sum_probs=145.3
Q ss_pred cHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHH-HhhcCCCCHHHHHHHHHHHHHhcCC--CCChH
Q 004073 516 VIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLV-ELCKGKTEHQCKLDALHALYNLSTI--PSNIP 590 (775)
Q Consensus 516 ~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV-~LL~~~~~~~~k~~Al~aL~nLs~~--~~nk~ 590 (775)
.+.+++..|++++. +..|+++|.+|+.+...+..+...|+|.+++ .+|.+. +.+++..|+++|.||+.. .+.+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCchHHH
Confidence 34456677888765 7889999999998888888888888888765 567777 999999999999999964 46789
Q ss_pred HHHHcCcHHHHHHhccCC--------------C-------hHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHHHhc
Q 004073 591 NLLSAGIISGLQSLAVPG--------------D-------PMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLD 648 (775)
Q Consensus 591 ~iv~aG~V~~Lv~LL~~~--------------~-------~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~ 648 (775)
.+++.|++++|..+|... . ..+.+.++.+|++||...+ ....+.. .+.++.|+..|.
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l~~l~~~L~ 192 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTILRLLFRLI 192 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccHHHHHHHHH
Confidence 999999999999987421 0 1345678899999997544 4455665 589999999885
Q ss_pred C---CCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHH---HHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 649 T---GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIP---ALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 649 ~---~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~---~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
. ....++..|+.+|+.++..+....+.+.+.|... .|+.+..+ +...+.-++.+|.++.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence 3 3578999999999999999988888888887533 33344443 4444667777877764
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-07 Score=114.24 Aligned_cols=271 Identities=13% Similarity=0.115 Sum_probs=188.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHH--hh--ccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhh
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVF--TG--ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~--i~--~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 501 (775)
+.+..++..+.++ +...+..|+..|..++++.+..-.. +. -.+.++.|++++.+ .+..++..|+.+|.++.
T Consensus 128 ~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~----~~~~vR~~A~~aL~~~~ 202 (852)
T 4fdd_A 128 DLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH----SSPKIRSHAVACVNQFI 202 (852)
T ss_dssp THHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTC----SSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHH
Confidence 5677788888887 8899999999999998764332111 00 13456666776665 78999999999998885
Q ss_pred ccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCc--cccccccCchHHHHHhhcCCCCHHHHHHHHH
Q 004073 502 VNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKGKTEHQCKLDALH 577 (775)
Q Consensus 502 ~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~--k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~ 577 (775)
.... ....-.-.+.++.|..++..++. +..|+.+|..++..... +..+ .+.++.++.++.+. +..++..|+.
T Consensus 203 ~~~~-~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~-~~~vr~~a~e 278 (852)
T 4fdd_A 203 ISRT-QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQDQ-DENVALEACE 278 (852)
T ss_dssp TTTC-HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTCS-SHHHHHHHHH
T ss_pred hccc-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccCC-cHHHHHHHHH
Confidence 4222 11111113578888888877765 46688888777654221 1122 35788899999887 8999999999
Q ss_pred HHHHhcCCCCChHHHHH---cCcHHHHHHhc-----------cC-----------CChHHHHHHHHHHHHHhCCcccHHH
Q 004073 578 ALYNLSTIPSNIPNLLS---AGIISGLQSLA-----------VP-----------GDPMWTEKSLAVLLNLAASAAGKEE 632 (775)
Q Consensus 578 aL~nLs~~~~nk~~iv~---aG~V~~Lv~LL-----------~~-----------~~~~i~e~al~~L~nLa~~~e~~~~ 632 (775)
.+..++.....+. .+. ...++.|+..+ .+ .+-.++..|..+|..|+.... ..
T Consensus 279 ~l~~l~~~~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~ 355 (852)
T 4fdd_A 279 FWLTLAEQPICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DE 355 (852)
T ss_dssp HHHHHTTSTTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GG
T ss_pred HHHHHhcchhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence 9999987553332 222 24566676665 22 122346778888888876432 12
Q ss_pred HhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 633 MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 633 i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
+.. ..++.+...+.+.++..|+.|+.+|.+++.+..+.... .-.++++.|+.++.+.++.+|..|...|..+...-
T Consensus 356 ~~~--~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 356 LLP--HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp GHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred HHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 332 46777888888889999999999999999876443222 22457889999999999999999999998888753
|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-08 Score=82.92 Aligned_cols=48 Identities=23% Similarity=0.566 Sum_probs=42.7
Q ss_pred CccccccccccccCc-eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDP-VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 281 ~~f~CPIs~~~m~dP-V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
.+..||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 467899999999998 67899999999999999975 5799999988753
|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-08 Score=79.08 Aligned_cols=47 Identities=26% Similarity=0.542 Sum_probs=42.2
Q ss_pred CccccccccccccC----ceecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYD----PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 281 ~~f~CPIs~~~m~d----PV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
+++.||||++.+.+ |++++|||+|++.||.+|+..+ .+||.|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 46889999999977 8889999999999999999874 89999998874
|
| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=8.1e-09 Score=81.64 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=41.0
Q ss_pred CCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
.+++.||||++.+.||++++|||+||+.||.+| ...||.|++++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 467999999999999999999999999999884 6689999988753
|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.3e-08 Score=79.28 Aligned_cols=50 Identities=20% Similarity=0.589 Sum_probs=42.9
Q ss_pred CCCcccccccccccc---CceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 279 PPEELRCPISLQLMY---DPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~---dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
...+..||||++.|. +|++++|||+|++.||.+|+.. +.+||.|+.++..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 456789999999884 5678999999999999999986 4579999998754
|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=4.3e-08 Score=76.80 Aligned_cols=48 Identities=25% Similarity=0.679 Sum_probs=42.5
Q ss_pred CCccccccccccccC---ceecC-CCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYD---PVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 280 p~~f~CPIs~~~m~d---PV~~~-~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
.++..||||++.|.+ +++++ |||+|++.||.+|+.. +.+||.|++++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 457899999999999 88887 9999999999999976 679999998763
|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.7e-08 Score=85.97 Aligned_cols=50 Identities=22% Similarity=0.551 Sum_probs=44.4
Q ss_pred CCCccccccccccccC---ceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 279 PPEELRCPISLQLMYD---PVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~d---PV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
..++..||||++.|.+ +++++|||+|++.||.+|+.. +.+||.|+.++..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 4568899999999988 888999999999999999975 6799999988754
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-07 Score=111.18 Aligned_cols=155 Identities=12% Similarity=0.030 Sum_probs=128.4
Q ss_pred CchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHH-hccCCChHHHHHHHHHHHHHhCC--cccH
Q 004073 554 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAAS--AAGK 630 (775)
Q Consensus 554 g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~-LL~~~~~~i~e~al~~L~nLa~~--~e~~ 630 (775)
..|.||++.|+++ ++..+..|++||.||+.++.++..++..|+|..++. +|.+.+..+++.|+++|.||+.. .+.+
T Consensus 34 ~~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKDLKSP-DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 4567888999998 999999999999999998889999999999988766 78889999999999999999864 4556
Q ss_pred HHHhhCCCcHHHHHHHhcCCC---------------------HHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhh
Q 004073 631 EEMNSTPGLVSGLATVLDTGE---------------------LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSIS 689 (775)
Q Consensus 631 ~~i~~~~g~I~~Lv~lL~~~s---------------------~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll 689 (775)
..+.+. |+++.|..++.... ....++++.+|++||..+.+....+...|+++.|+.++
T Consensus 113 ~~l~~~-~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 113 VHLYRL-DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHT-THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHc-ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 677775 89999999885211 13456889999999988878888888999999999776
Q ss_pred hcC---ChHHHHHHHHHHHHhHhc
Q 004073 690 VNG---STRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 690 ~~g---~~~~k~kA~~LL~~L~~~ 710 (775)
.+. ...++..|..+|..|.+.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred HhcCCCcHHHHHHHHHHHHHHhcc
Confidence 442 457888888888888654
|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=6.8e-08 Score=87.81 Aligned_cols=50 Identities=16% Similarity=0.394 Sum_probs=43.1
Q ss_pred CCccccccccccccCce------------------ecCCCCccchHHHHHHHh----cCCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDPV------------------IIASGQTYERICIEKWLS----DGHSTCPKTQQKLPH 329 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV------------------~~~~G~ty~r~~I~~w~~----~~~~~CP~t~~~l~~ 329 (775)
+.+..||||++.|.+|+ +++|||.|++.||.+|+. ..+.+||.|+..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 45679999999999987 789999999999999996 346799999988753
|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.4e-08 Score=82.12 Aligned_cols=49 Identities=18% Similarity=0.505 Sum_probs=43.8
Q ss_pred CCccccccccccccCc---eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDP---VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 280 p~~f~CPIs~~~m~dP---V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
.++..||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 4678999999999998 77899999999999999986 5799999998764
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.50 E-value=3.1e-06 Score=98.62 Aligned_cols=262 Identities=12% Similarity=0.074 Sum_probs=175.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
+..+...|.+. ++.+|.+|+..+..+.+.+++ .+.+.|+++.|..+|.+ .|+.++.+|+.+|..++..+.+.
T Consensus 123 ~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d----~d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 123 CEPLRKCLKDE-DPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIAD----SNPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp HHHHHHHSSCS-CHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSC----SCHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHcCCC-ChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCC----CChhHHHHHHHHHHHHHhhCCCc
Confidence 34456666666 999999999999999987654 23336889999999987 79999999999999997543322
Q ss_pred hHHHHhhCcHHHHHHHhccCChH--HHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 004073 508 KELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 585 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~ 585 (775)
...-...+.++.|+..|...+.. ...+.++..+...+.. .....++.|..+|++. +..++..|++++.++...
T Consensus 195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~----~~~~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~ 269 (591)
T 2vgl_B 195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR----EAQSICERVTPRLSHA-NSAVVLSAVKVLMKFLEL 269 (591)
T ss_dssp CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH----HHHHHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCS
T ss_pred cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhc
Confidence 11112234577777777766653 3455555555432210 1135688888888887 889999999999999742
Q ss_pred ----CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCC-cc---------------c----HHHH-----hhC
Q 004073 586 ----PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAAS-AA---------------G----KEEM-----NST 636 (775)
Q Consensus 586 ----~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~-~e---------------~----~~~i-----~~~ 636 (775)
++.... +-..++++|+.++. .+..++..|+.+|..++.. ++ . +.++ +.+
T Consensus 270 ~~~~~~~~~~-~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~ 347 (591)
T 2vgl_B 270 LPKDSDYYNM-LLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLAS 347 (591)
T ss_dssp CCBTTBSHHH-HHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCC
T ss_pred cCCCHHHHHH-HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCC
Confidence 222222 33446677887664 6777888888888877641 11 0 1110 001
Q ss_pred CC----cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 637 PG----LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 637 ~g----~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
+. .+..|.+.+...+...+..++.++..+|...+... ...++.|+.++....+.++..+...++.+-.
T Consensus 348 ~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~ 419 (591)
T 2vgl_B 348 QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFR 419 (591)
T ss_dssp SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 22 34445556667889999999999999997654332 2357888888888888888777766665543
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-06 Score=100.98 Aligned_cols=257 Identities=11% Similarity=0.002 Sum_probs=182.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHH
Q 004073 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL 510 (775)
Q Consensus 431 Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~ 510 (775)
+...+.+. ++.+|..++..|..++..-.. .......+|.+..+|.+ .+..++..++.+|..+...... .
T Consensus 329 l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d----~~~~Vr~~a~~~l~~l~~~~~~--~- 397 (588)
T 1b3u_A 329 IKELVSDA-NQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKD----ECPEVRLNIISNLDCVNEVIGI--R- 397 (588)
T ss_dssp HHHHHTCS-CHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTC----SCHHHHHHHHTTCHHHHHHSCH--H-
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCC----CchHHHHHHHHHHHHHHHhcCH--H-
Confidence 33445555 899999999999888753111 11123467888888876 6889999999888877532111 1
Q ss_pred HHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCC
Q 004073 511 MLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSN 588 (775)
Q Consensus 511 i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~n 588 (775)
......+|.|..++...+. +..++.++..++..-.. .......+|.++.+|.+. +..+++.|+.+|..++..-+.
T Consensus 398 ~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 398 QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCc
Confidence 1234678899998877654 45566666666532111 112235689999999988 899999999999999754332
Q ss_pred hHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 004073 589 IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 589 k~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
. .....++|.|+.++.+.+..++..++.++..++..- +...+.. ..++.|+..+.+..+.+|..++.+|..++..
T Consensus 475 ~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~-~~~~~~~--~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 475 E--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC-GQDITTK--HMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp H--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH-HHHHHHH--HTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred h--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc-CHHHHHH--HHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 2 223457888888888888888999999999987632 2222332 5789999999999999999999999999864
Q ss_pred ChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 669 NEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 669 ~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
-.. ......++|.|..++.+.+..+|..|...|..+.+
T Consensus 550 ~~~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 550 LDN---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp SCH---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred hch---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 211 12234567778788888999999999999987754
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-06 Score=98.88 Aligned_cols=264 Identities=14% Similarity=0.108 Sum_probs=174.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+.+++..+...+++.+|..|+..|..++...... ......+|.|..++.+ ++..++..|+.+|..++...+.
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d----~~~~vr~~a~~~l~~l~~~~~~ 236 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASD----EQDSVRLLAVEACVNIAQLLPQ 236 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTC----SCHHHHTTHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHhCCH
Confidence 44455444433338999999999999998653321 1234677888888876 7889999999999988643221
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
......++|.+..++...+. +..|+.+|..++..-.. .......++.++.++++. ++.++..|+.+|..++.
T Consensus 237 ---~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 237 ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCE 310 (588)
T ss_dssp ---HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHH
Confidence 12334578888888877664 46677777666542111 111246789999999988 99999999999999985
Q ss_pred CCC--ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004073 585 IPS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 585 ~~~--nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
.-. .+....-..++|.+..++.+.+..++..++.+|..++..-. ..... +..++.+..++.+.++.++..|+.+|
T Consensus 311 ~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~-~~~~~--~~l~p~l~~~l~d~~~~Vr~~a~~~l 387 (588)
T 1b3u_A 311 NLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDNTI--EHLLPLFLAQLKDECPEVRLNIISNL 387 (588)
T ss_dssp TSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHHHH--HHTHHHHHHHHTCSCHHHHHHHHTTC
T ss_pred HhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-HhHHH--HHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 432 22223345678888888888888888988888888875321 12222 24678888888888888888888887
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 663 FLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
..++..-... .....++|.|..++.+.+.++|..+...|..+..
T Consensus 388 ~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 388 DCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp HHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 7776421110 0112345555555555556666666655555543
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-06 Score=96.62 Aligned_cols=276 Identities=13% Similarity=0.078 Sum_probs=180.6
Q ss_pred hHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccC-hhhhHHhhccCchHHHHHHhchhccCC--CHHHHHHHHHHHHHhh
Q 004073 426 ERYQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDD-EEARVFTGANGFVVALLRFLESAVCER--NSYAQEIGAMALFNLA 501 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~-~~~~q~~Al~~L~~Lak~~-~~nr~~i~~~G~I~~Lv~lL~s~~~~~--d~~~qe~A~~aL~nLs 501 (775)
+.+..++..+.++. +...+..|+..|..++++. .+.-... -..+++.++.+|.+ . +..++..|+.++.++.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~----~~~~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRK----EEPSNNVKLAATNALLNSL 202 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHST----TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHHH
Confidence 55666777776643 6788999999999998753 2110111 13467778888876 4 7899999999999864
Q ss_pred ccCCchh-HHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCC--ccccccccCchHHHHHhhcCCCCHHHHHHHH
Q 004073 502 VNNNRNK-ELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--AKPIIGSSHAVPFLVELCKGKTEHQCKLDAL 576 (775)
Q Consensus 502 ~~~~~nk-~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~--~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al 576 (775)
..-..+- ..+...-.++.|...+.+.+. +..++.+|..+..... .+..+. .+.++.++..+++. +..++..|+
T Consensus 203 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~-~~~v~~~a~ 280 (462)
T 1ibr_B 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSD-IDEVALQGI 280 (462)
T ss_dssp TTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCS-SHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC-chHHHHHHH
Confidence 2111110 011112246666666665554 4557777766654322 112221 17788888888887 899999999
Q ss_pred HHHHHhcCCC------------------CChHHHHH---cCcHHHHHHhccC-------CChHHHHHHHHHHHHHhCCcc
Q 004073 577 HALYNLSTIP------------------SNIPNLLS---AGIISGLQSLAVP-------GDPMWTEKSLAVLLNLAASAA 628 (775)
Q Consensus 577 ~aL~nLs~~~------------------~nk~~iv~---aG~V~~Lv~LL~~-------~~~~i~e~al~~L~nLa~~~e 628 (775)
..+..++... .....+++ ..++|.|+..|.+ .+...+..|+.+|..|+..-.
T Consensus 281 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~ 360 (462)
T 1ibr_B 281 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE 360 (462)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc
Confidence 9999887532 01111221 3366777776643 234567888889988876433
Q ss_pred cHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCh-HhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004073 629 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 629 ~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
..+.. ..++.+...+.+.+...++.|+.+|..++.+.. +..... -..++|.|+.++.+.++.+|..|...|..+
T Consensus 361 --~~~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~ 435 (462)
T 1ibr_B 361 --DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435 (462)
T ss_dssp --TTHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred --HHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 12332 466777778888899999999999999997542 111111 146889999999999999999999999998
Q ss_pred HhccCC
Q 004073 708 REQRQR 713 (775)
Q Consensus 708 ~~~~~~ 713 (775)
...-..
T Consensus 436 ~~~~~~ 441 (462)
T 1ibr_B 436 CELLPE 441 (462)
T ss_dssp HHHGGG
T ss_pred HHhccc
Confidence 876543
|
| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.2e-08 Score=82.17 Aligned_cols=45 Identities=22% Similarity=0.388 Sum_probs=41.4
Q ss_pred CCccccccccccccCceecCCCCc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
.+++.||||++.+.|||+++|||+ ||+.|+.+| ..||.|++++..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 467899999999999999999999 999999999 789999998753
|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-07 Score=103.10 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=44.8
Q ss_pred ccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCC
Q 004073 282 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHL 330 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~ 330 (775)
...||||++.+.|||+++|||+||+.||..|+..++.+||.|++++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3799999999999999999999999999999986678999999988654
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.37 E-value=4e-06 Score=97.72 Aligned_cols=253 Identities=15% Similarity=0.161 Sum_probs=178.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..+-..|.++ +.+.+.+++..|-.+...+.+. ..+.+.+++++.+ .+...+..+..++.+++..+++
T Consensus 14 e~~~i~~~L~~~-~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s----~~~~~Krl~yl~l~~~~~~~~e 82 (591)
T 2vgl_B 14 EIFELKAELNNE-KKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQT----DNLELKKLVYLYLMNYAKSQPD 82 (591)
T ss_dssp HHHHHHHHTTSS-CHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSS----SCHHHHHHHHHHHHHHHHHSHH
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcccCch
Confidence 455666678887 7888888887776654333321 2456678888877 7899999888888888542211
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
. -.-++..|.+-|.+++. +..|+.+|.++...+ + ....++.+.++|.+. ++.+++.|+.+|.++..
T Consensus 83 ~-----~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~-----~-~~~l~~~l~~~L~d~-~~~VRk~A~~al~~i~~ 150 (591)
T 2vgl_B 83 M-----AIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDK-----I-TEYLCEPLRKCLKDE-DPYVRKTAAVCVAKLHD 150 (591)
T ss_dssp H-----HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGG-----G-HHHHHHHHHHHSSCS-CHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHH-----H-HHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHh
Confidence 1 12346677777877776 456777776664111 1 134678899999988 99999999999999986
Q ss_pred CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004073 585 IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFL 664 (775)
Q Consensus 585 ~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~ 664 (775)
.... .+.+.|.++.|..+|.+.++.++..|+.+|..++........+.-..+.+..|+..+...++..+-..+.+|..
T Consensus 151 ~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~ 228 (591)
T 2vgl_B 151 INAQ--MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSN 228 (591)
T ss_dssp SSCC--CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHT
T ss_pred hChh--hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHH
Confidence 3322 22346889999999999999999999999999987643220000001346777888878899999999999988
Q ss_pred hhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 665 LCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 665 Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
++..++.... .+++.|..++.+.++.++..|..++..+..
T Consensus 229 l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 229 YNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp SCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred hCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 8866543322 346677777888888888888888877653
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.2e-08 Score=89.63 Aligned_cols=56 Identities=25% Similarity=0.549 Sum_probs=50.6
Q ss_pred CCccccccccccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 004073 280 PEELRCPISLQLMYDP-------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 336 (775)
Q Consensus 280 p~~f~CPIs~~~m~dP-------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~ 336 (775)
++.+.||||++.+.+| |+++|||+|+..||.+|+.. +.+||.|+.++....+.|++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceeee
Confidence 5789999999999998 88999999999999999986 56999999999888887764
|
| >2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=3.2e-07 Score=76.96 Aligned_cols=45 Identities=22% Similarity=0.388 Sum_probs=40.2
Q ss_pred CCccccccccccccCceecCCCCc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
.+++.||||++.+.|||+++|||+ ||+.|+.++ ..||.|++++..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 457899999999999999999999 999999643 689999998865
|
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.2e-07 Score=81.45 Aligned_cols=66 Identities=11% Similarity=0.320 Sum_probs=49.3
Q ss_pred CccccccccccccCceec---CCCCccchHHHHHHHh----cC---CCCCCC--CCCC--CCCCCCcccHHHHHHHHHHH
Q 004073 281 EELRCPISLQLMYDPVII---ASGQTYERICIEKWLS----DG---HSTCPK--TQQK--LPHLCLTPNYCVKGLIASWC 346 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~---~~G~ty~r~~I~~w~~----~~---~~~CP~--t~~~--l~~~~l~pn~~l~~~i~~~~ 346 (775)
+.|.||||++.+.+|+++ +|||+||+.||..|+. +| ...||. |++. ++...+. +....++++.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~-~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE-CMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH-HHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH-HHCCHHHHHHHH
Confidence 578999999999999876 6999999999999986 33 247999 9887 5433222 333356667776
Q ss_pred H
Q 004073 347 E 347 (775)
Q Consensus 347 ~ 347 (775)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=1e-06 Score=75.03 Aligned_cols=48 Identities=23% Similarity=0.506 Sum_probs=40.5
Q ss_pred CccccccccccccC--------------ceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYD--------------PVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 281 ~~f~CPIs~~~m~d--------------PV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
++-.|+||++-|.+ ++++ +|||.|.+.||.+|+.. +.+||.|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 56779999999988 4455 59999999999999986 5699999998753
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00012 Score=85.67 Aligned_cols=248 Identities=15% Similarity=0.115 Sum_probs=167.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
+..+...|.+. ++.+|.+|+..+..+.+.+++.- .++++.|..+|.+ .|+.++..|+.+|..++..+.+.
T Consensus 144 ~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D----~d~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 144 AGEVEKLLKTS-NSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNE----KNHGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp HHHHHHHHHSC-CHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTC----CCHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCC----CCHhHHHHHHHHHHHHHHhChHH
Confidence 45556667777 99999999999999998776532 2678888888876 79999999999999996422111
Q ss_pred hHHHHhhCcHHHHHHHhcc---------------CCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhc------
Q 004073 508 KELMLAAGVIPLLEKMISN---------------SNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCK------ 564 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s---------------~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~------ 564 (775)
... -...+|.++.+|.. .+. +...+.+|..+...+.. . ....++.|..++.
T Consensus 214 ~~~--~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~---~-~~~~~~~L~~l~~~~~~~~ 287 (618)
T 1w63_A 214 LAH--FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD---S-SEAMNDILAQVATNTETSK 287 (618)
T ss_dssp HHH--HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH---H-HHTTHHHHHHHHHTSCCSS
T ss_pred HHH--HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH---H-HHHHHHHHHHHHhcccccc
Confidence 111 13678888888763 122 24455556555543211 0 1234555666553
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHH
Q 004073 565 GKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLA 644 (775)
Q Consensus 565 ~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv 644 (775)
+. +..+.-.|++++.++... ..++. .++..|..+|.+.++.++..|+.+|..++... ..++. .....++
T Consensus 288 ~~-~~aV~~ea~~~i~~l~~~----~~l~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~--~~~~~i~ 356 (618)
T 1w63_A 288 NV-GNAILYETVLTIMDIKSE----SGLRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ--RHRSTIV 356 (618)
T ss_dssp TH-HHHHHHHHHHHHHHSCCC----HHHHH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG--GGHHHHH
T ss_pred ch-HHHHHHHHHHHHHhcCCC----HHHHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC---HHHHH--HHHHHHH
Confidence 22 457888889999887542 22222 47788888888888888899999999888642 22332 3567888
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 645 TVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 645 ~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
..+.+.+..++..|+.+|..|+..+. ... ++..|+..+.+.+...|..+...|..+..
T Consensus 357 ~~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 357 DCLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HGGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 88888889999999999999987642 222 23556666666677777777766666654
|
| >2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.8e-06 Score=70.06 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=43.1
Q ss_pred CCccccccccccccCceec--CCCCc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDPVII--ASGQT-YERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~--~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
+++..|+||++-+.|+|++ +|||. ||..|+.+|+.. +..||.||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 4677999999999999988 99999 899999999975 568999999874
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3.3e-05 Score=93.15 Aligned_cols=273 Identities=8% Similarity=0.035 Sum_probs=173.2
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhh-HHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 428 YQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDDEEAR-VFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 428 i~~Ll~~L~s~~-~~~~q~~Al~~L~~Lak~~~~nr-~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
+..++..+...+ +.++|..|+..|..++..-..+- .......+++.+..++.+ .+..++..++.+|..+.....
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~----~~~~vr~~a~~~l~~l~~~~~ 249 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC----PDTRVRVAALQNLVKIMSLYY 249 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHhH
Confidence 444555565542 57899999999998875422211 001111256666666654 688999999999999875333
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC-------------------Cccccccc--cCchHHHHHh
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-------------------DAKPIIGS--SHAVPFLVEL 562 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~-------------------~~k~~I~~--~g~i~~LV~L 562 (775)
..-...+....++.+...+...+. +..|+..+..++... .....+.. ...++.++.+
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~ 329 (876)
T 1qgr_A 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (876)
T ss_dssp GGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHH
Confidence 222223334788888887766543 344555555554321 00011110 3457778888
Q ss_pred hcCC------CCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc--cHHHHh
Q 004073 563 CKGK------TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA--GKEEMN 634 (775)
Q Consensus 563 L~~~------~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e--~~~~i~ 634 (775)
|... .+...++.|+.+|..|+..-.. .++. .+++.+...+.+.+..+++.|+.+|..++.... ......
T Consensus 330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~ 406 (876)
T 1qgr_A 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred hhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 7521 1456888999999888743221 1222 456666677778888999999999999987543 222333
Q ss_pred hCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhH-HHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 635 STPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCC-QMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 635 ~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~-~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
...++.|+..+.+.++.++..|+.+|..++....... ..-.-..+++.|+..+.+. ++++..|.+.|..+...
T Consensus 407 --~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 407 --IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 2578999999999999999999999999996532210 0000123567777777664 89999999998888765
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00025 Score=85.42 Aligned_cols=275 Identities=13% Similarity=0.081 Sum_probs=177.1
Q ss_pred hHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccC-hhhhHHhhc--cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhh
Q 004073 426 ERYQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDD-EEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLA 501 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~-~~~~q~~Al~~L~~Lak~~-~~nr~~i~~--~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs 501 (775)
+.+..++..+.++. +..++..++..|..++..- ++. +.. ...++.++..|.+. ..+..++..|+.+|.++.
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~---~~~~~~~ll~~l~~~l~~~--~~~~~vr~~a~~~l~~~~ 202 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ---LQDKSNEILTAIIQGMRKE--EPSNNVKLAATNALLNSL 202 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH---HGGGHHHHHHHHHHHHSTT--CSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhh---HHhHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHH
Confidence 45666666676542 6788999999999998652 221 111 34566677777651 016889999999999875
Q ss_pred ccCCch-hHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCc--cccccccCchHHHHHhhcCCCCHHHHHHHH
Q 004073 502 VNNNRN-KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKGKTEHQCKLDAL 576 (775)
Q Consensus 502 ~~~~~n-k~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~--k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al 576 (775)
..-..+ .........++.+...+...+. +..++.+|..+...... ...+ ....++.++..+.+. +..++..|+
T Consensus 203 ~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~-~~~v~~~al 280 (876)
T 1qgr_A 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSD-IDEVALQGI 280 (876)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTCS-SHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcCC-chHHHHHHH
Confidence 321111 0111112367777777765554 35566666665543211 1111 136788888888877 889999999
Q ss_pred HHHHHhcCCC-------------------C--ChHHHHHcCcHHHHHHhccC-------CChHHHHHHHHHHHHHhCCcc
Q 004073 577 HALYNLSTIP-------------------S--NIPNLLSAGIISGLQSLAVP-------GDPMWTEKSLAVLLNLAASAA 628 (775)
Q Consensus 577 ~aL~nLs~~~-------------------~--nk~~iv~aG~V~~Lv~LL~~-------~~~~i~e~al~~L~nLa~~~e 628 (775)
..+.+++... . +...-.-..+++.++.+|.. .+..++..|+.+|..|+..-.
T Consensus 281 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~ 360 (876)
T 1qgr_A 281 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE 360 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc
Confidence 9998887431 0 11110113467777787742 234566788888888876432
Q ss_pred cHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCh-HhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004073 629 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 629 ~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
. .+.. ..++.+...+.+.++..|+.|+.+|..++.+.. +.....+ ..+++.|+..+.+.++.+|..|...|..+
T Consensus 361 ~--~~~~--~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~ 435 (876)
T 1qgr_A 361 D--DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRI 435 (876)
T ss_dssp G--GGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred H--hhHH--HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 1 2222 456667777778899999999999999997643 3222222 34788899999999999999999999988
Q ss_pred HhccC
Q 004073 708 REQRQ 712 (775)
Q Consensus 708 ~~~~~ 712 (775)
...-.
T Consensus 436 ~~~~~ 440 (876)
T 1qgr_A 436 CELLP 440 (876)
T ss_dssp HHHCG
T ss_pred HHhCc
Confidence 87643
|
| >2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* | Back alignment and structure |
|---|
Probab=98.01 E-value=2.7e-06 Score=68.78 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=42.3
Q ss_pred CccccccccccccCceec--CCCCc-cchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDPVII--ASGQT-YERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~--~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
.+..|+||++-++|+|++ +|||. ||..|+.+|+.. +..||.||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 466899999999999998 99998 999999999876 478999999875
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=97.96 E-value=2.1e-05 Score=94.71 Aligned_cols=268 Identities=12% Similarity=0.063 Sum_probs=169.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccCh-hhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchh-H
Q 004073 432 LNVLNEGENLGQKCNIVEQIRLLLKDDE-EARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNK-E 509 (775)
Q Consensus 432 l~~L~s~~~~~~q~~Al~~L~~Lak~~~-~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk-~ 509 (775)
...+.+. +|..|..|+..|..++.... +.-.... ..+++.|+..+.+ .++.++..++++|..++..-...- .
T Consensus 375 ~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 375 EQNITAD-NWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMND----QSLQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGC----SCHHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHcCCC-ChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 3345555 89999999999999996532 2111111 2467778887766 689999999999998864211100 0
Q ss_pred HHHhhCcHHHHHHHhccCCh-HHHHHHHHhcccccCC--ccccccc--cCchHHHHHhhcCC-CCHHHHHHHHHHHHHhc
Q 004073 510 LMLAAGVIPLLEKMISNSNS-HGAATALYLNLSFLDD--AKPIIGS--SHAVPFLVELCKGK-TEHQCKLDALHALYNLS 583 (775)
Q Consensus 510 ~i~~~G~i~~Lv~lL~s~~~-~~~AaaaL~~Ls~~~~--~k~~I~~--~g~i~~LV~LL~~~-~~~~~k~~Al~aL~nLs 583 (775)
.-.-..++|.|+..|..... +..|++++.+++..-. ....+.. ...++.|+.++.+. .+..++..++.+|..+.
T Consensus 449 ~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 449 QQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMV 528 (861)
T ss_dssp TTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHH
Confidence 00123467888888876522 4668888877664321 1122222 45688888999753 13678999999999998
Q ss_pred CCCCCh-HHHHHcCcHHHHHHhccC---------------CChHHHHHHHHHHHHHhCCccc-HHHHhhCCCcHHHHHHH
Q 004073 584 TIPSNI-PNLLSAGIISGLQSLAVP---------------GDPMWTEKSLAVLLNLAASAAG-KEEMNSTPGLVSGLATV 646 (775)
Q Consensus 584 ~~~~nk-~~iv~aG~V~~Lv~LL~~---------------~~~~i~e~al~~L~nLa~~~e~-~~~i~~~~g~I~~Lv~l 646 (775)
...... ...+ ...++.+++.+.. ....++..++.+|.+++..-.. ..... ...++.++.+
T Consensus 529 ~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~ 605 (861)
T 2bpt_A 529 EYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFRL 605 (861)
T ss_dssp HHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHH
T ss_pred HHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHH
Confidence 544332 2222 2366777765532 1234566788888888763221 11112 2467777888
Q ss_pred hcCCCH-HHHHHHHHHHHHhhcCChH-hHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 647 LDTGEL-IEQEQAVSCLFLLCNGNEK-CCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 647 L~~~s~-~~~e~Av~~L~~Lc~~~~~-~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
+...+. .+++.++.++..++..... ....+ ..+++.|+..+.+.+..++..|..++..+.+.
T Consensus 606 l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 606 LEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred HccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 887766 7899999988888753222 22211 22678888777777888999999888766654
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00026 Score=82.90 Aligned_cols=257 Identities=14% Similarity=0.117 Sum_probs=167.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
......+..+.+. +.+.|+-+--.+..+++.+++... -++..|.+-|.+ .++.++..|+.+|.++.. +
T Consensus 70 ~~~~~vik~~~s~-~~~~Krl~Yl~~~~~~~~~~e~~~-----l~in~l~kDL~~----~n~~vr~lAL~~L~~i~~--~ 137 (618)
T 1w63_A 70 FGQLECLKLIASQ-KFTDKRIGYLGAMLLLDERQDVHL-----LMTNCIKNDLNH----STQFVQGLALCTLGCMGS--S 137 (618)
T ss_dssp GGHHHHHHHHHSS-SHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHSC----SSSHHHHHHHHHHHHHCC--H
T ss_pred chHHHHHHHHcCC-chHHHHHHHHHHHHHhCCCcHHHH-----HHHHHHHHhcCC----CCHhHHHHHHHHHHhcCC--H
Confidence 3455566666666 888888888888888887665322 124456666665 789999999999999952 2
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
.+ ....++.+...|.+.+. +..|+.++..+.... ...+ .+.++.|..+|.+. ++.++..|+.+|..++
T Consensus 138 ----~~-~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~--p~~v--~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~ 207 (618)
T 1w63_A 138 ----EM-CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV--PELM--EMFLPATKNLLNEK-NHGVLHTSVVLLTEMC 207 (618)
T ss_dssp ----HH-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC--GGGG--GGGGGGTTTSTTCC-CHHHHHHHHHHHHHHC
T ss_pred ----HH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--hHHH--HHHHHHHHHHhCCC-CHhHHHHHHHHHHHHH
Confidence 12 24678899999988776 567777777766532 1222 37888899999988 9999999999999998
Q ss_pred CCCCChHHHHHcCcHHHHHHhccC---------------CChHHHHHHHHHHHHHhCCccc-HHH-------Hh------
Q 004073 584 TIPSNIPNLLSAGIISGLQSLAVP---------------GDPMWTEKSLAVLLNLAASAAG-KEE-------MN------ 634 (775)
Q Consensus 584 ~~~~nk~~iv~aG~V~~Lv~LL~~---------------~~~~i~e~al~~L~nLa~~~e~-~~~-------i~------ 634 (775)
.......... ...++.|+.+|.+ .++-++-.++.+|..++..... ... +.
T Consensus 208 ~~~~~~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~ 286 (618)
T 1w63_A 208 ERSPDMLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETS 286 (618)
T ss_dssp CSHHHHHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCS
T ss_pred HhChHHHHHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccc
Confidence 6432111112 3577777776542 2566666677777777653211 000 00
Q ss_pred ----------------hC-------CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc
Q 004073 635 ----------------ST-------PGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN 691 (775)
Q Consensus 635 ----------------~~-------~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~ 691 (775)
.- ..++..|..+|.+.++.+|..|+.+|..++...+. +++ .....++..+.+
T Consensus 287 ~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~~-~~~~~i~~~l~d 361 (618)
T 1w63_A 287 KNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AVQ-RHRSTIVDCLKD 361 (618)
T ss_dssp STHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HHG-GGHHHHHHGGGS
T ss_pred cchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HHH-HHHHHHHHHccC
Confidence 00 01345555556666666666666666666543321 111 245567778888
Q ss_pred CChHHHHHHHHHHHHhHhc
Q 004073 692 GSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 692 g~~~~k~kA~~LL~~L~~~ 710 (775)
.+..+|..|..+|..+...
T Consensus 362 ~d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 362 LDVSIKRRAMELSFALVNG 380 (618)
T ss_dssp SCHHHHHHHHHHHHHHCCS
T ss_pred CChhHHHHHHHHHHHHccc
Confidence 8999999999999877654
|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
Probab=97.94 E-value=5.5e-06 Score=74.18 Aligned_cols=47 Identities=19% Similarity=0.446 Sum_probs=40.5
Q ss_pred CccccccccccccCc------------------eecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDP------------------VIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 281 ~~f~CPIs~~~m~dP------------------V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
++-.|+||++-|.+| +.++|||.|.+.||.+|+.. +.+||.|++++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 356799999999987 34699999999999999986 789999998753
|
| >2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.3e-05 Score=65.70 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=40.8
Q ss_pred CCCccccccccccccCceecCCCCc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 279 PPEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
-.++..|+||++-..|||+++|||. ||..|+.+ ...||.|++++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3467899999999999999999999 99999984 4689999998864
|
| >2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A | Back alignment and structure |
|---|
Probab=97.93 E-value=2e-06 Score=72.88 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=40.7
Q ss_pred CCccccccccccccCceecCCCCc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
.++..|+||++.+.|||+++|||. ||+.|+.+|. .||.|++++..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 457899999999999999999999 9999999873 99999998864
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.93 E-value=1.8e-05 Score=99.86 Aligned_cols=270 Identities=11% Similarity=0.103 Sum_probs=179.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..++..+.+. +.++|..|...|....+.+...-..-.....++.|++.|.+ .+..++..|+.+|.+++....
T Consensus 6 ~~l~~lL~~l~s~-d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d----~~~~vR~~A~~~L~~l~~~~~ 80 (1230)
T 1u6g_C 6 YHISNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED----KNGEVQNLAVKCLGPLVSKVK 80 (1230)
T ss_dssp HHHHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHhcCCC-CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhCC
Confidence 3577889999888 99999999999998776531100001113567788888875 789999999999999974322
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCcc----cccc--ccCchHHHHHhhcC-CCCHHHHHHHH
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAK----PIIG--SSHAVPFLVELCKG-KTEHQCKLDAL 576 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k----~~I~--~~g~i~~LV~LL~~-~~~~~~k~~Al 576 (775)
. . .-..+++.|...|.+++. +..|+.+|..++..-... .... -...+|.|+..+.+ + +...+..|+
T Consensus 81 ~--~--~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~-~~~~~~~al 155 (1230)
T 1u6g_C 81 E--Y--QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE-DVSVQLEAL 155 (1230)
T ss_dssp H--H--HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS-CHHHHHHHH
T ss_pred H--H--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCC-chHHHHHHH
Confidence 2 1 113467777887766554 445555665554321111 0111 14678999999984 6 899999999
Q ss_pred HHHHHhcCCCC--ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCC-CHH
Q 004073 577 HALYNLSTIPS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTG-ELI 653 (775)
Q Consensus 577 ~aL~nLs~~~~--nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~-s~~ 653 (775)
.+|..++.... -... -...++.|+..|.+.+..++..|+.+|..++...... +. ...++.|+..|... ++.
T Consensus 156 ~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~~--~~~l~~l~~~L~~~~~~~ 229 (1230)
T 1u6g_C 156 DIMADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--VF--VDLIEHLLSELSKNDSMS 229 (1230)
T ss_dssp HHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--HH--HHHHHHHHHHhccCCchh
Confidence 99999984211 1111 1346777888888888899999999999998754322 22 35788888888643 235
Q ss_pred HHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccC
Q 004073 654 EQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 654 ~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
.+..++.+|..++...+..... .-..+++.++..+.+.++.+|+.|...+..+.....
T Consensus 230 ~r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 230 TTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp SCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh
Confidence 6667788888877532221100 113578888888888889999999988887776533
|
| >3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B | Back alignment and structure |
|---|
Probab=97.93 E-value=1.8e-06 Score=93.31 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=41.8
Q ss_pred CCCccccccccccccCceecCCCCc-cchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 279 PPEELRCPISLQLMYDPVIIASGQT-YERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~~~G~t-y~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
+.+++.||||++.+.|||+++|||+ ||+.|+.+| ..||.|+.++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 3567999999999999999999999 999999998 689999998753
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00024 Score=71.46 Aligned_cols=215 Identities=15% Similarity=0.113 Sum_probs=147.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~-nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
+.-++..|... +..++..|+..|..+.+.-+. .+..+. ...++.++.++.+ .|..+-..|+.+|..|-.+.+-
T Consensus 35 l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~----~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 35 LFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQ----ENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCS----TTHHHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhc----cchhHHHHHHHHHHHHHcCCCC
Confidence 33444555554 999999999999999998433 333333 4568999999988 8999999999999888544333
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
....+. -++..|..++.+++. ++.|+-.+..+.... -..+++..|..++.+. +.+++..|+.+|.|++.
T Consensus 109 ~~~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~------~~~~V~~~l~sLl~Sk-d~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 109 GSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLE------DSKLVRTYINELVVSP-DLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp CHHHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC------CCHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHGG
T ss_pred CHHHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCccc------chHHHHHHHHHHHhCC-ChhHHHHHHHHHHHhhc
Confidence 333322 245677888888876 577888888772222 2246778899999777 99999999999999997
Q ss_pred CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHh--cCCCHHHHHHHHH
Q 004073 585 IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL--DTGELIEQEQAVS 660 (775)
Q Consensus 585 ~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL--~~~s~~~~e~Av~ 660 (775)
..++...+ .+++.-+-++|++.++.+++.|+.+|..+.+.+--...+-+- ..|...|+-| ..|.|..++.|=.
T Consensus 180 ~S~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~-~~~~~~v~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 180 SSADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL-LKISRIVDGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp GCSSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH-HHHHHHHHHGGGCSSCHHHHHHHHH
T ss_pred ccCCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH-HHHHHHHHHHHHhcCChhHHHHHHH
Confidence 55432211 234445667888889999999999999998864321111110 1233333333 3578887777643
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=97.91 E-value=8.2e-05 Score=82.42 Aligned_cols=232 Identities=7% Similarity=0.046 Sum_probs=147.2
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhhH-HhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 428 YQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDDEEARV-FTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 428 i~~Ll~~L~s~~-~~~~q~~Al~~L~~Lak~~~~nr~-~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
+..++..|...+ +..+|..|+..+..++..-.++-. .....-.++.|...+.+ .+..++..++.+|..++....
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC----PDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHHH
Confidence 444555665542 589999999999987642111110 00011134555555544 788999999999999875332
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC------------Ccc------ccccc---cCchHHHHHh
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD------------DAK------PIIGS---SHAVPFLVEL 562 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~------------~~k------~~I~~---~g~i~~LV~L 562 (775)
..-...+..++++.++..+...+. +..|+..+..++... +.. ..+.. ...+|.|+..
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~ 329 (462)
T 1ibr_B 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (462)
T ss_dssp GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence 211111112678888877776554 355666555554321 000 11111 2356777777
Q ss_pred hcCC------CCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCccc--HHHHh
Q 004073 563 CKGK------TEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG--KEEMN 634 (775)
Q Consensus 563 L~~~------~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~--~~~i~ 634 (775)
|... .+...+..|+.+|..|+..-+. .++ ..+++.+...+.+.+...++.|+.+|..++..... -...+
T Consensus 330 l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l 406 (462)
T 1ibr_B 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (462)
T ss_dssp TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT
T ss_pred HHhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 7431 1346889999999999854331 222 35677777888888899999999999999974331 11112
Q ss_pred hCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 004073 635 STPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 635 ~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
...++.|+..|.+.++.+|..|+.+|..++..
T Consensus 407 --~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 407 --IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp --TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999864
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00016 Score=86.87 Aligned_cols=267 Identities=10% Similarity=0.032 Sum_probs=169.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc-----
Q 004073 432 LNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR----- 506 (775)
Q Consensus 432 l~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~----- 506 (775)
...+.+. ++++|..|+..|..++...++.-........++.++..+.+ .+..++..|+.++..++.....
T Consensus 230 ~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~----~~~~vr~~a~~~l~~l~~~~~~~~~~~ 304 (861)
T 2bpt_A 230 CEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS----PNDKVASMTVEFWSTICEEEIDIAYEL 304 (861)
T ss_dssp HHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3344455 89999999999999986543211111111455555556654 6889999999988888632100
Q ss_pred ---------hhHHH--HhhCcHHHHHHHhccCC---------hHHHHHHHHhcccccCCccccccccCchHHHHHhhcCC
Q 004073 507 ---------NKELM--LAAGVIPLLEKMISNSN---------SHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK 566 (775)
Q Consensus 507 ---------nk~~i--~~~G~i~~Lv~lL~s~~---------~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~ 566 (775)
.+..+ .-...+|.|+..|...+ .+..|..+|..++..-. ...+ ...++.+..++.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~--~~l~~~l~~~l~~~ 381 (861)
T 2bpt_A 305 AQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHIL--EPVLEFVEQNITAD 381 (861)
T ss_dssp HHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGH--HHHHHHHHHHTTCS
T ss_pred hhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-HhHH--HHHHHHHHHHcCCC
Confidence 00011 11457888888886421 13556777766665322 1111 34567777788887
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChHHHHH--cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccH---HHHhhCCCcHH
Q 004073 567 TEHQCKLDALHALYNLSTIPSNIPNLLS--AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGK---EEMNSTPGLVS 641 (775)
Q Consensus 567 ~~~~~k~~Al~aL~nLs~~~~nk~~iv~--aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~---~~i~~~~g~I~ 641 (775)
+...++.|+.+|..++.... ...+.. ..+++.|+..+.+.++.++..++++|..++..-... .... ...++
T Consensus 382 -~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~ 457 (861)
T 2bpt_A 382 -NWRNREAAVMAFGSIMDGPD-KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQ 457 (861)
T ss_dssp -SHHHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHH
T ss_pred -ChhHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHH
Confidence 89999999999999985433 112211 357888999888889999999999999998632110 1112 14677
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCCh----HhHHHHHHCCCHHHHHHhhhcC--ChHHHHHHHHHHHHhHhccC
Q 004073 642 GLATVLDTGELIEQEQAVSCLFLLCNGNE----KCCQMVLQEGVIPALVSISVNG--STRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 642 ~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~----~~~~~v~~~G~i~~Lv~Ll~~g--~~~~k~kA~~LL~~L~~~~~ 712 (775)
.|+..+.+. +.++..|+.+|.+++..-. ....... ..+++.|+.++.+. ++.+|..|...|..+.....
T Consensus 458 ~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 458 ACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc
Confidence 788888765 8999999999999885310 1110011 23467777777643 37889888888887776543
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.86 E-value=8.2e-05 Score=75.98 Aligned_cols=180 Identities=18% Similarity=0.114 Sum_probs=128.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhc-hhccCCCHHHHHHHHHHHHHhhccCCchh
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLE-SAVCERNSYAQEIGAMALFNLAVNNNRNK 508 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~-s~~~~~d~~~qe~A~~aL~nLs~~~~~nk 508 (775)
.++..+.+. +|..|..|+..|..++...+..-..- -..+++.|...|. + .+..++..|+.+|..|+..-. ..
T Consensus 19 ~l~~~l~s~-~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd----~~~~V~~~a~~~l~~la~~l~-~~ 91 (242)
T 2qk2_A 19 DFYDKLEEK-KWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKD----SNVVLVAMAGKCLALLAKGLA-KR 91 (242)
T ss_dssp THHHHHTCS-SHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHHHG-GG
T ss_pred HHHhhhccC-CHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHHHh-hh
Confidence 366677777 99999999999999997633211000 0234566666663 4 789999999999999974211 11
Q ss_pred HHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 004073 509 ELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP 586 (775)
Q Consensus 509 ~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~ 586 (775)
..-.-...+|.|+..+..... ++.|..+|..+..... + ...++.|...|++. ++.++..++..|..+....
T Consensus 92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~--~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----L--EAQQESIVESLSNK-NPSVKSETALFIARALTRT 164 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----H--HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----H--HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 111124488999999987765 4667777776654321 1 34688899999988 9999999999999965432
Q ss_pred C----ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC
Q 004073 587 S----NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 587 ~----nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~ 625 (775)
. .... +. .+++.|+.+|.+.+..++..|..+|..++.
T Consensus 165 ~~~~~~~~~-l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 165 QPTALNKKL-LK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CGGGCCHHH-HH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHH-HH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2 2222 22 588999999999999999999999998875
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00013 Score=77.59 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=127.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHH-hcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhh
Q 004073 557 PFLVELCKGKTEHQCKLDALHALYN-LSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS 635 (775)
Q Consensus 557 ~~LV~LL~~~~~~~~k~~Al~aL~n-Ls~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~ 635 (775)
..+++-|.++ +.+.++.++.-|.. ++.+..-...+|..||+..|+.+...++...+..++.+|.+|-....|...++.
T Consensus 121 ~~iiekL~~~-~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 121 NAILEKLYSS-SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHC-CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHhcC-CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 3444555666 77888889999988 667788899999999999999999888999999999999999999999999998
Q ss_pred CCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHC--------C--CHHHHHHhhh---cCChHHHHHHHH
Q 004073 636 TPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQE--------G--VIPALVSISV---NGSTRGRDKAQR 702 (775)
Q Consensus 636 ~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~--------G--~i~~Lv~Ll~---~g~~~~k~kA~~ 702 (775)
+..+|..|+.++.+....+...|+.+|..+|..++.+...+.++ | -...|+.++. +++..++.+|..
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 88899999999998889999999999999998775454444332 2 3778998887 789999999999
Q ss_pred HHHHhHh
Q 004073 703 LLMLFRE 709 (775)
Q Consensus 703 LL~~L~~ 709 (775)
|+..+-.
T Consensus 280 LIN~lL~ 286 (339)
T 3dad_A 280 LINKTLA 286 (339)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9865543
|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=2.9e-05 Score=65.83 Aligned_cols=56 Identities=16% Similarity=0.336 Sum_probs=45.2
Q ss_pred CCCccccccccccc--cCceecCCC-----CccchHHHHHHHhc-CCCCCCCCCCCCCCC-CCcc
Q 004073 279 PPEELRCPISLQLM--YDPVIIASG-----QTYERICIEKWLSD-GHSTCPKTQQKLPHL-CLTP 334 (775)
Q Consensus 279 ~p~~f~CPIs~~~m--~dPV~~~~G-----~ty~r~~I~~w~~~-~~~~CP~t~~~l~~~-~l~p 334 (775)
..++..|+||++-+ .+|++++|+ |.|-+.||.+|+.. +..+||+|+.++... .+.|
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 34677999999876 579999996 99999999999985 447999999998643 3444
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0002 Score=73.03 Aligned_cols=183 Identities=9% Similarity=-0.043 Sum_probs=129.0
Q ss_pred HHHHHhccCCh--HHHHHHHHhccccc-CCcc-ccccccCchHHHHHhhc-CCCCHHHHHHHHHHHHHhcCCCCChHHHH
Q 004073 519 LLEKMISNSNS--HGAATALYLNLSFL-DDAK-PIIGSSHAVPFLVELCK-GKTEHQCKLDALHALYNLSTIPSNIPNLL 593 (775)
Q Consensus 519 ~Lv~lL~s~~~--~~~AaaaL~~Ls~~-~~~k-~~I~~~g~i~~LV~LL~-~~~~~~~k~~Al~aL~nLs~~~~nk~~iv 593 (775)
.+...+.+.+- +..|+..|..+... +... ..+ ...++.|..+|. +. +..++..|+.+|..|+..-...-.-.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 35566665553 34466566555443 2211 111 356888889994 77 99999999999999995322211112
Q ss_pred HcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh-cCChHh
Q 004073 594 SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC-NGNEKC 672 (775)
Q Consensus 594 ~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc-~~~~~~ 672 (775)
-.-+++.|++.+.+.+..+++.|..+|.+++.... - ...++.|...|.+.++.+|+.++..|..+. ...++.
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 23488999999999999999999999999987542 1 136788888899899999999999999965 433321
Q ss_pred -HHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccC
Q 004073 673 -CQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 673 -~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~ 712 (775)
....+. .++|.|+.++.+...++|..|...|..+...-.
T Consensus 169 ~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 169 LNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp CCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 112222 478999999999999999999999888775543
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00061 Score=68.55 Aligned_cols=218 Identities=15% Similarity=0.129 Sum_probs=155.4
Q ss_pred CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCChH--HHHHHHHhccccc-CC
Q 004073 469 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSFL-DD 545 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~-~~ 545 (775)
+.+..|+.+|.. .|..++.+|+.+|-.+-..-+.....+.-...+|.++.++.+.+.+ -.|+.+|..|-.+ +-
T Consensus 33 ~~l~~L~~LL~d----kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 33 RALFLILELAGE----DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHHHTTS----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred hHHHHHHHHHhc----cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC
Confidence 456788899977 8999999999999998542222233333466899999999888875 4577777654432 21
Q ss_pred ccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC
Q 004073 546 AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 546 ~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~ 625 (775)
..... .-++.+|+.++.++ +.-....|+..|..|......+ +++..|.+|+.+.+..++..++.+|.|++.
T Consensus 109 ~~~~y--~Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 109 GSKTF--LKAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp CHHHH--HHHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred CHHHH--HHHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 22222 24578999999988 9999999999999994333222 356778888888999999999999999988
Q ss_pred CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHH------HH-Hhh-hcCChHHH
Q 004073 626 SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPA------LV-SIS-VNGSTRGR 697 (775)
Q Consensus 626 ~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~------Lv-~Ll-~~g~~~~k 697 (775)
..+...-+ .+.+.-+-.+|.+.++..++.|+.+|..+.+..-. +.+++. .+ .|. ..|.|..+
T Consensus 180 ~S~D~~i~---~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~-------~~~~~~~~~~~~~v~~l~~~~~~~~~~ 249 (265)
T 3b2a_A 180 SSADSGHL---TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL-------ENVKIELLKISRIVDGLVYREGAPIIR 249 (265)
T ss_dssp GCSSCCCG---GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC-------SCCHHHHHHHHHHHHHGGGCSSCHHHH
T ss_pred ccCCHHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc-------HhHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 54332211 13444566788889999999999999999876411 223333 33 344 56899999
Q ss_pred HHHHHHHHHhHh
Q 004073 698 DKAQRLLMLFRE 709 (775)
Q Consensus 698 ~kA~~LL~~L~~ 709 (775)
.+|..+-..+-.
T Consensus 250 ~ka~~v~~~le~ 261 (265)
T 3b2a_A 250 LKAKKVSDLIDS 261 (265)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988766643
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0046 Score=72.28 Aligned_cols=249 Identities=12% Similarity=0.169 Sum_probs=160.9
Q ss_pred HHHHHH--hcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 430 DFLNVL--NEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 430 ~Ll~~L--~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
.+...| .+. ++-+|.+|+..+..+.+.+++. +-..++++.|..+|.+ .|+.++.+|+.+|..++..+.
T Consensus 150 ~v~~~l~~~d~-~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d----~d~~V~~~a~~~l~~i~~~~~-- 219 (621)
T 2vgl_A 150 EIPKILVAGDT-MDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLND----QHLGVVTAATSLITTLAQKNP-- 219 (621)
T ss_dssp HHHHHHHCSSS-CHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHhCCCC-CHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCC----CCccHHHHHHHHHHHHHHhCh--
Confidence 444456 455 8999999999999999876642 2225899999999976 799999999999999975322
Q ss_pred hHHHHhhCcHHHHHHHhc----cC-------------Ch--HHHHHHHHhcccccCC--ccccccccCchHHHHHhhcCC
Q 004073 508 KELMLAAGVIPLLEKMIS----NS-------------NS--HGAATALYLNLSFLDD--AKPIIGSSHAVPFLVELCKGK 566 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~----s~-------------~~--~~~AaaaL~~Ls~~~~--~k~~I~~~g~i~~LV~LL~~~ 566 (775)
..+ ...+|.++..|. .+ +. +.....+|..+...++ .+..+ .+.+..++..+.+.
T Consensus 220 -~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l--~~~L~~il~~~~~~ 294 (621)
T 2vgl_A 220 -EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRL--TECLETILNKAQEP 294 (621)
T ss_dssp -HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHH--HHHHHHHHHHHHSC
T ss_pred -HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHH--HHHHHHHHHhhccC
Confidence 111 234555555443 22 22 2334555555543221 11111 12333343332111
Q ss_pred C--------CH--HHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhC
Q 004073 567 T--------EH--QCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST 636 (775)
Q Consensus 567 ~--------~~--~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~ 636 (775)
. +. .+.-.|+.++..+.. + ..++. .++..|..+|.+.++.++-.++..|..++........+.
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~---~-~~~~~-~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~-- 367 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDS---E-PNLLV-RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK-- 367 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCC---C-HHHHH-HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH--
T ss_pred cccccccccchHHHHHHHHHHHHHhcCC---c-HHHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH--
Confidence 0 22 677788888888853 2 22222 367889999988889999999999999987653333332
Q ss_pred CCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 637 PGLVSGLATVLD-TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 637 ~g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
.....++..|. +.++.++..|+.+|..|+..+ +...+ +..|...+...+...++.+...+..+.
T Consensus 368 -~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~--Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 368 -THIETVINALKTERDVSVRQRAVDLLYAMCDRS--NAQQI-----VAEMLSYLETADYSIREEIVLKVAILA 432 (621)
T ss_dssp -TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH--HHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh--hHHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 35788888898 889999999999999999643 43333 445555556666676766665555444
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00034 Score=72.24 Aligned_cols=190 Identities=11% Similarity=0.078 Sum_probs=127.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH-HhccChhhhHHhhc-cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC-c
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRL-LLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN-R 506 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~-Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~-~ 506 (775)
.|...+.+. +|..|.+|+.+|.. ++.+.++....-.+ ...+..|...|.. ..+..++..|+.+|..|+.+-. .
T Consensus 20 ~f~~~l~s~-~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~---D~n~~v~~~A~~al~~la~~l~~~ 95 (249)
T 2qk1_A 20 DFQERITSS-KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK---DANIQAVALAAQSVELICDKLKTP 95 (249)
T ss_dssp THHHHHTCS-SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHhhcC-CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHhcccc
Confidence 456667777 99999999999999 88654321100112 2345666666632 2688999999999999974211 1
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCcccccc--ccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIG--SSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~--~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
.-..-...-++|.|+..+..... +..+..+|..+...-+ ..... -...++.|+..|++. ++.++..++.+|..+
T Consensus 96 ~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~-~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 96 GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD-PLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNAS 173 (249)
T ss_dssp TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC-TTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc-ccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHH
Confidence 10001112378999999877654 3555556655544211 11111 135788999999998 999999999999999
Q ss_pred cCCCCCh-HHH---HHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC
Q 004073 583 STIPSNI-PNL---LSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 583 s~~~~nk-~~i---v~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~ 625 (775)
....... ..+ +...++|.|..++.+.+..+++.|..+|..++.
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8544431 222 225799999999999999999999999988864
|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.49 E-value=1.5e-05 Score=72.50 Aligned_cols=46 Identities=22% Similarity=0.510 Sum_probs=0.4
Q ss_pred ccccccccccccCcee------------------cCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 282 ELRCPISLQLMYDPVI------------------IASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~------------------~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
+-.|+||++-|.+|.+ .+|||.|.+.||.+|+.. +.+||.|++++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 3479999999998532 489999999999999986 779999998753
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.49 E-value=3.4e-05 Score=71.18 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=84.9
Q ss_pred hCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHH
Q 004073 514 AGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPN 591 (775)
Q Consensus 514 ~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~ 591 (775)
...++.|+.+|++.+. +..|+.+|..+. ...++.|+.+|++. ++.++..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~-----------~~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNE-DWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhC-----------chHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC-------
Confidence 4567778888876554 344555544332 12379999999988 99999999999999853
Q ss_pred HHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004073 592 LLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFL 664 (775)
Q Consensus 592 iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~ 664 (775)
..+++.|+.+|.+.+..++..|+.+|.++.. ...++.|+.++.+.++.++..|+.+|..
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2368999999998999999999999998852 2468899999998899999999888754
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.42 E-value=1.5e-05 Score=73.71 Aligned_cols=119 Identities=16% Similarity=0.068 Sum_probs=91.0
Q ss_pred cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHH
Q 004073 553 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEE 632 (775)
Q Consensus 553 ~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~ 632 (775)
...++.|+.+|+++ ++.++..|+++|.++.. ..++.|+.+|.+.+..++..|+.+|.++..
T Consensus 11 ~~~~~~l~~~L~~~-~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADE-NKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSS-CCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCC-CHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 46788999999988 88899999988876632 136899999999999999999999988753
Q ss_pred HhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHH
Q 004073 633 MNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM 705 (775)
Q Consensus 633 i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~ 705 (775)
...++.|+.+|.+.++.++..|+.+|..+.. ..+++.|+.++.+.++.+|..|...|.
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2468999999999999999999999998863 125788999888999999999988765
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0025 Score=80.23 Aligned_cols=267 Identities=13% Similarity=0.114 Sum_probs=168.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc--cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 503 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~--~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 503 (775)
+.+..++..+...+++.++..|+..|..++..... .+.. ...++.|+..|.+ .+..++..|+.+|..++..
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~---~l~~~~~~ll~~l~~~L~~----~~~~vR~~a~~al~~l~~~ 205 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG---LLVNFHPSILTCLLPQLTS----PRLAVRKRTIIALGHLVMS 205 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS---SCTTTHHHHHHHHGGGGGC----SSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh---HHHHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHHHh
Confidence 44555666776323889999999999998864221 1111 2345555555654 6789999999999999743
Q ss_pred CCchhHHHHhhCcHHHHHHHhccCC---hHHHHHHHHhcccccCCccccccc--cCchHHHHHhhcCCCCHHHHHHHHHH
Q 004073 504 NNRNKELMLAAGVIPLLEKMISNSN---SHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHA 578 (775)
Q Consensus 504 ~~~nk~~i~~~G~i~~Lv~lL~s~~---~~~~AaaaL~~Ls~~~~~k~~I~~--~g~i~~LV~LL~~~~~~~~k~~Al~a 578 (775)
.. .. + -...++.|+..|.... .+..++.++..++..... .+.. ...++.++..+.+. ++.++..|+.+
T Consensus 206 ~~-~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~-~~~vR~~a~~~ 278 (1230)
T 1u6g_C 206 CG-NI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVD-DDELREYCIQA 278 (1230)
T ss_dssp C--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSC-CTTTHHHHHHH
T ss_pred cC-HH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 22 11 1 2346888888886543 234455555555432211 2222 57899999999887 88899999999
Q ss_pred HHHhcCCCC--ChHHHHHcCcHHHHHHhccCC-------------------------------------ChHHHHHHHHH
Q 004073 579 LYNLSTIPS--NIPNLLSAGIISGLQSLAVPG-------------------------------------DPMWTEKSLAV 619 (775)
Q Consensus 579 L~nLs~~~~--nk~~iv~aG~V~~Lv~LL~~~-------------------------------------~~~i~e~al~~ 619 (775)
+..++..-. .+.. + ..+++.++..+... ...++..|+.+
T Consensus 279 l~~l~~~~~~~~~~~-l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~ 356 (1230)
T 1u6g_C 279 FESFVRRCPKEVYPH-V-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKC 356 (1230)
T ss_dssp HHHHHHCTTCCCHHH-H-HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHH
T ss_pred HHHHHHHChHHHHHh-H-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHH
Confidence 998875332 2222 1 23556665544310 11346778888
Q ss_pred HHHHhCCcc-cHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCh----------------HhHHHH--HHCC
Q 004073 620 LLNLAASAA-GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE----------------KCCQMV--LQEG 680 (775)
Q Consensus 620 L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~----------------~~~~~v--~~~G 680 (775)
|..++.... .-..+.. ..++.|+..+...++.++..++.+|..++.... .....+ .-..
T Consensus 357 l~~l~~~~~~~~~~~~~--~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 434 (1230)
T 1u6g_C 357 LDAVVSTRHEMLPEFYK--TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPN 434 (1230)
T ss_dssp HHHHHTTCCTTHHHHHT--TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTH
T ss_pred HHHHHHhchhHHHHHHH--HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhH
Confidence 888887432 2234443 578888888877788999999999888774210 001111 1123
Q ss_pred CHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 681 VIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 681 ~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
+++.+...+.+.+.++|..+..+|..+...
T Consensus 435 ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 435 IVKALHKQMKEKSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 566666678888999998888888777655
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0019 Score=66.57 Aligned_cols=186 Identities=10% Similarity=0.033 Sum_probs=127.5
Q ss_pred HHhccCCh--HHHHHHHHhc-ccccCCccccc---cc-cCchHHHHHhh-cCCCCHHHHHHHHHHHHHhcCCCC---Ch-
Q 004073 522 KMISNSNS--HGAATALYLN-LSFLDDAKPII---GS-SHAVPFLVELC-KGKTEHQCKLDALHALYNLSTIPS---NI- 589 (775)
Q Consensus 522 ~lL~s~~~--~~~AaaaL~~-Ls~~~~~k~~I---~~-~g~i~~LV~LL-~~~~~~~~k~~Al~aL~nLs~~~~---nk- 589 (775)
..+.+..- +..|+..|.. +... +...+ +. ...+..|.+.+ ++. +..++..|+.+|..|+..-. -.
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~--~~~i~~~~~~~~~~~~~L~~~l~~D~-n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQ--TKKLKSTSQNYSNLLGIYGHIIQKDA-NIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGG--CCCBCCTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhc--CCccccCcccHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhcccccccH
Confidence 34455443 3445555655 5432 22222 22 35678888888 566 99999999999999984322 11
Q ss_pred HHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhh-CCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 004073 590 PNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNS-TPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG 668 (775)
Q Consensus 590 ~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~-~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~ 668 (775)
... .-++|.+++.+.+....+++.+..+|..++..-+. ..... -+.+++.|+..|.+..+.+|+.++.+|..++..
T Consensus 100 ~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 222 22789999999988889999999999988863211 00000 114677888889988999999999999998864
Q ss_pred ChH---hHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccCC
Q 004073 669 NEK---CCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 669 ~~~---~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
... .....+...++|.|..++.+.++.+|..|...|..+...-..
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 422 111222256899999999999999999999999887765443
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.01 Score=69.32 Aligned_cols=258 Identities=14% Similarity=0.135 Sum_probs=152.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.....+..+.+. +.+.|+-+--.+..+++.+++.- -..++.+..+..+.++.++-.|+.+|.++.. ++
T Consensus 75 ~~~~vvkl~~s~-~~~~Krl~YL~l~~~~~~~~e~~---------~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e 142 (621)
T 2vgl_A 75 GHMEAVNLLSSN-RYTEKQIGYLFISVLVNSNSELI---------RLINNAIKNDLASRNPTFMGLALHCIANVGS--RE 142 (621)
T ss_dssp CHHHHHHGGGCS-CHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH
T ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHHHHccCCcHHH---------HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH
Confidence 455566666666 88888888888888888766432 2223333333334899999999999999942 21
Q ss_pred hhHHHHhhCcHHHHHHHh--ccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 507 NKELMLAAGVIPLLEKMI--SNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL--~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
+ -...+|.+...| .+.+. +..|+-++..+.... ...+...+.++.|.++|.+. ++.++.+|+.+|..+
T Consensus 143 ----~-~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--p~~~~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 143 ----M-AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS--PDLVPMGDWTSRVVHLLNDQ-HLGVVTAATSLITTL 214 (621)
T ss_dssp ----H-HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC--GGGCCCCSCHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred ----H-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC--hhhcCchhHHHHHHHHhCCC-CccHHHHHHHHHHHH
Confidence 2 235778888998 55554 466666666555432 22332258899999999887 999999999999999
Q ss_pred cCCCCC-----hH-------HHHHcCcH----------------HHHHHhcc----CCChHHHHHHHHHHHHHhC----C
Q 004073 583 STIPSN-----IP-------NLLSAGII----------------SGLQSLAV----PGDPMWTEKSLAVLLNLAA----S 626 (775)
Q Consensus 583 s~~~~n-----k~-------~iv~aG~V----------------~~Lv~LL~----~~~~~i~e~al~~L~nLa~----~ 626 (775)
+..... .. .++..|-. -.++++|. .+++...+....+|..+.. .
T Consensus 215 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~ 294 (621)
T 2vgl_A 215 AQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEP 294 (621)
T ss_dssp HHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence 854321 01 11111100 01122221 1122322222222222110 0
Q ss_pred c-----ccH--------------------HHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCC
Q 004073 627 A-----AGK--------------------EEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGV 681 (775)
Q Consensus 627 ~-----e~~--------------------~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~ 681 (775)
+ ..+ ..+.. .++..|..+|.+.++.+|-.|+..|..++...+. .. +++ ..
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~--~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~~-~~ 369 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV--RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AVK-TH 369 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HHH-TT
T ss_pred cccccccccchHHHHHHHHHHHHHhcCCcHHHHH--HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HHH-HH
Confidence 0 000 01111 3456666777677778888888888888765421 11 122 24
Q ss_pred HHHHHHhhh-cCChHHHHHHHHHHHHhHh
Q 004073 682 IPALVSISV-NGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 682 i~~Lv~Ll~-~g~~~~k~kA~~LL~~L~~ 709 (775)
...++..+. +.+..+|.+|..+|..+..
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence 566667677 8888999999988876653
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.022 Score=60.64 Aligned_cols=175 Identities=11% Similarity=0.043 Sum_probs=124.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..+..++..|.++ +.+.++.++..|+.+..++.+.-..++..|++..|+++... .+...|..++.+|.+|.. +.
T Consensus 118 ~ra~~iiekL~~~-~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~----~~gN~q~Y~L~AL~~LM~-~v 191 (339)
T 3dad_A 118 VRVNAILEKLYSS-SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA----ADHNYQSYILRALGQLML-FV 191 (339)
T ss_dssp HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT----SCHHHHHHHHHHHHHHTT-SH
T ss_pred HHHHHHHHHHhcC-CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh----cChHHHHHHHHHHHHHHh-cc
Confidence 4677888889888 89999999999999555556666667777889999999987 688999999999999964 55
Q ss_pred chhHHHH-hhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccc-cccc--------cC--chHHHHHhhc---CCCC
Q 004073 506 RNKELML-AAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKP-IIGS--------SH--AVPFLVELCK---GKTE 568 (775)
Q Consensus 506 ~nk~~i~-~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~-~I~~--------~g--~i~~LV~LL~---~~~~ 568 (775)
.....++ ....|..|..++.+... ...|..+|..+....+... .+.. .| -...|+.+|. .+ +
T Consensus 192 ~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~-D 270 (339)
T 3dad_A 192 DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA-D 270 (339)
T ss_dssp HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC-C
T ss_pred ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC-C
Confidence 5555555 45689999999986543 3568888888776554222 2211 11 3779999997 55 8
Q ss_pred HHHHHHHHHHHHHhcCCCCC---hHHHH----HcCcHHHHHHhccC
Q 004073 569 HQCKLDALHALYNLSTIPSN---IPNLL----SAGIISGLQSLAVP 607 (775)
Q Consensus 569 ~~~k~~Al~aL~nLs~~~~n---k~~iv----~aG~V~~Lv~LL~~ 607 (775)
.+.+.+|...|-.+-..... +..++ +.|.-..+...|..
T Consensus 271 ~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 271 PELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 99999988876665433222 33443 24544555556654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.045 Score=66.59 Aligned_cols=248 Identities=15% Similarity=0.143 Sum_probs=162.5
Q ss_pred HHHHHHHHHHhccChh---hhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHH
Q 004073 445 CNIVEQIRLLLKDDEE---ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLE 521 (775)
Q Consensus 445 ~~Al~~L~~Lak~~~~---nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv 521 (775)
..|+..+..++..... .-..+ .+.+|.++..+.+ .+..++..|..++..+...- +...+ ..++|.|+
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~d----k~~~v~~aa~~~~~~~~~~~--~~~a~--~~~~~~~~ 139 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICTNAGN----KDKEIQSVASETLISIVNAV--NPVAI--KALLPHLT 139 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHS--CGGGH--HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHhC--CHHHH--HHHHHHHH
Confidence 7788888888854321 11111 1456666666654 56778877766666554211 22222 45799999
Q ss_pred HHhccCChH---HHHHHHHhcccccCCccccccc--cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcC
Q 004073 522 KMISNSNSH---GAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAG 596 (775)
Q Consensus 522 ~lL~s~~~~---~~AaaaL~~Ls~~~~~k~~I~~--~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG 596 (775)
..|.++..+ ..|+.++..|+... ...++. ...||.+.+.+-+. .+++++.|..++-.+|..-+|+.. ..
T Consensus 140 ~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~---~~ 213 (986)
T 2iw3_A 140 NAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI---ER 213 (986)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT---GG
T ss_pred HHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch---hh
Confidence 999877653 44666666666533 445554 57888888888877 899999999999999987777543 45
Q ss_pred cHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc--CChHhHH
Q 004073 597 IISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCN--GNEKCCQ 674 (775)
Q Consensus 597 ~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~--~~~~~~~ 674 (775)
.||.|++-+.+++. +.+++..|..-.-..+.-..-+. -.+|.|..-|...+..++..++-+.-|||+ .++....
T Consensus 214 ~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~ 289 (986)
T 2iw3_A 214 FIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIA 289 (986)
T ss_dssp GHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred hHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHh
Confidence 78999998876644 25555555443333332222111 235666666666788899999999999997 4544433
Q ss_pred HHHHCCCHHHHHHhhhc-CChHHHHHHHHHHHHhHhccCC
Q 004073 675 MVLQEGVIPALVSISVN-GSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 675 ~v~~~G~i~~Lv~Ll~~-g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
..+ ...+|.|-....+ ..|++|+.|.+.+..|.+....
T Consensus 290 ~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 290 PFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred hhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 332 3466666654443 6899999999999999877554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.67 E-value=0.12 Score=62.47 Aligned_cols=222 Identities=12% Similarity=0.020 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHH
Q 004073 441 LGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLL 520 (775)
Q Consensus 441 ~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~L 520 (775)
..++..|+..|....-++. +..+++.|..+|.. .+..+.+.|+.+|.-+-.+.. |.. ++..|
T Consensus 451 ~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~d----d~~~~~~~AalALGli~vGTg-n~~------ai~~L 512 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYN----DSATSGEAAALGMGLCMLGTG-KPE------AIHDM 512 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTTCC-CHH------HHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhc----CCHHHHHHHHHHHhhhhcccC-CHH------HHHHH
Confidence 4566677777776543321 12356778888876 455556667667665533222 222 34556
Q ss_pred HHHhccC-Ch--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCc
Q 004073 521 EKMISNS-NS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGI 597 (775)
Q Consensus 521 v~lL~s~-~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~ 597 (775)
+..+... +. +..++-.|..+. ++....++.|++.|....++-++..|+.++.--.....|.. +
T Consensus 513 L~~~~e~~~e~vrR~aalgLGll~--------~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------a 578 (963)
T 4ady_A 513 FTYSQETQHGNITRGLAVGLALIN--------YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------A 578 (963)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHT--------TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------H
T ss_pred HHHHhccCcHHHHHHHHHHHHhhh--------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------H
Confidence 6655433 22 223433343332 23356789999988754488888888888876666666643 4
Q ss_pred HHHHHHhc-cCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCChHhHHH
Q 004073 598 ISGLQSLA-VPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL-DTGELIEQEQAVSCLFLLCNGNEKCCQM 675 (775)
Q Consensus 598 V~~Lv~LL-~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL-~~~s~~~~e~Av~~L~~Lc~~~~~~~~~ 675 (775)
|+.|+..+ .+.+..++..|+..|+.++.... ..++.++.+| .++++.+|..|+.+|..+|.+++.
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~---- 645 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL---- 645 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----
Confidence 56666644 45567788888888887765432 3567777755 468999999999999999876531
Q ss_pred HHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 676 VLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 676 v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
..++..|..++.+.+..++..|...|-++-..
T Consensus 646 ---~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 646 ---QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp ---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred ---HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 11456677777788888888888777665433
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.014 Score=65.50 Aligned_cols=248 Identities=10% Similarity=0.072 Sum_probs=155.6
Q ss_pred CCchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh--hhHHhhccCchHHHHHHhchh-----c-cCCCHHHHHH
Q 004073 421 GNNVFERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE--ARVFTGANGFVVALLRFLESA-----V-CERNSYAQEI 492 (775)
Q Consensus 421 ~~~~~~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~--nr~~i~~~G~I~~Lv~lL~s~-----~-~~~d~~~qe~ 492 (775)
+|-.. .+..|+..|-+. .|++|..|+..||.+.+.... .|..-......-.|+.+|.-+ + +.--..++|.
T Consensus 170 eWPfq-fcE~L~~DLFdp-~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRET 247 (800)
T 3oc3_A 170 ENVLD-FFEQISDNLLSY-EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDA 247 (800)
T ss_dssp CSGGG-TTHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHH
T ss_pred CCHHH-HHHHHHHHhcCc-chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHH
Confidence 56656 788889999998 999999999999999875431 111001112233344433211 0 0112468888
Q ss_pred HHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCChHHH---HHHHHhcccccCCccccccc-cCchHHHHHhhcCCCC
Q 004073 493 GAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHGA---ATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGKTE 568 (775)
Q Consensus 493 A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~~~~---AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~~~ 568 (775)
++.+|..+ .+-+.. ..++..|+..+... .++. ++-.|.++ +..+.. .++++.++.-|.+. +
T Consensus 248 aAQtLGaL-~hLp~e------~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~-D 312 (800)
T 3oc3_A 248 AAYLLSRI-YPLIGP------NDIIEQLVGFLDSG-DWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSP-D 312 (800)
T ss_dssp HHHHHHHH-TTTSCS------CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCS-S
T ss_pred HHHHHHHH-HhCChh------HHHHHHHHhhcCCC-CeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCc-c
Confidence 88888887 543332 34454555433333 3444 33334445 233322 57888999999988 9
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccC-CC-hHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHH
Q 004073 569 HQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVP-GD-PMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATV 646 (775)
Q Consensus 569 ~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~-~~-~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~l 646 (775)
.+++..|+.+|..++ .++.... ++..|-+.|.+ ++ ..-+...+..|+.|++.+.. ....+..||.|...
T Consensus 313 DDVRAVAAetLiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PF 383 (800)
T 3oc3_A 313 EDIKLLSAELLCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPC 383 (800)
T ss_dssp HHHHHHHHHHHTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGG
T ss_pred cHHHHHHHHHhhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhh
Confidence 999999999999998 2222222 22223333322 21 22235677788888876642 12234789999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHH-HhhhcCChHHHHHHHHHHH
Q 004073 647 LDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALV-SISVNGSTRGRDKAQRLLM 705 (775)
Q Consensus 647 L~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv-~Ll~~g~~~~k~kA~~LL~ 705 (775)
+++.-..+|..++.+|..+. .. .++..+. .++...++.+++.+..+.+
T Consensus 384 LRHtITSVR~AVL~TL~tfL--~~---------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 384 FTSPVPEVRTSILNMVKNLS--EE---------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GTCSSHHHHHHHHHHTTTCC--CH---------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHH--hh---------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999999999998877 11 1333333 6778888999998888876
|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0049 Score=51.08 Aligned_cols=48 Identities=19% Similarity=0.414 Sum_probs=38.4
Q ss_pred CccccccccccccCceec-CCCCccchHHHHHHHhc-CCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDPVII-ASGQTYERICIEKWLSD-GHSTCPKTQQKLP 328 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~-~~~~CP~t~~~l~ 328 (775)
..-.|+||.+++..=+.- .|||.|=..||.+||.. +..+||.|+++..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 345899999998743332 68999999999999975 3489999998765
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.19 Score=48.82 Aligned_cols=211 Identities=14% Similarity=0.143 Sum_probs=141.2
Q ss_pred cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccC
Q 004073 468 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLD 544 (775)
Q Consensus 468 ~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~ 544 (775)
..++..++.+|.. +-..+|.+|+..|.+++..-++-.. -.+..|+-+|+.... ...-+.++..++...
T Consensus 31 ~~~l~~lI~~LDD----DlwtV~kNAl~vi~~i~~~~~el~e-----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~ 101 (253)
T 2db0_A 31 ESVLKKLIELLDD----DLWTVVKNAISIIMVIAKTREDLYE-----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK 101 (253)
T ss_dssp HHHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCGGGHH-----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcc----HHHHHHHhHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC
Confidence 4567889999976 5578999999999999743332222 234455556554443 344455555554321
Q ss_pred CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC-CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 004073 545 DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNL 623 (775)
Q Consensus 545 ~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~-~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nL 623 (775)
..+. .+.+|.|..-.+-| ++.++.+-..+|-.++. +++- -.+++.-+..++.+.+.. .=+.+|.-+
T Consensus 102 ---Pe~v-~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l-----~~~v~rdi~smltskd~~---Dkl~aLnFi 168 (253)
T 2db0_A 102 ---PELV-KSMIPVLFANYRIG-DEKTKINVSYALEEIAKANPML-----MASIVRDFMSMLSSKNRE---DKLTALNFI 168 (253)
T ss_dssp ---HHHH-HHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHTSCSSHH---HHHHHHHHH
T ss_pred ---HHHH-HhhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHH-----HHHHHHHHHHHhcCCChH---HHHHHHHHH
Confidence 1111 35677777777788 99999999999998874 2221 234566677888877743 444555555
Q ss_pred hCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHH
Q 004073 624 AASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRL 703 (775)
Q Consensus 624 a~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~L 703 (775)
..-.++.-..+. -.+|.|..+|...+.-++..|+.+|.+++.-++..+..+ ..-+.=+.+.++-++.+...-
T Consensus 169 ~alGen~~~yv~--PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~eg 240 (253)
T 2db0_A 169 EAMGENSFKYVN--PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEG 240 (253)
T ss_dssp HTCCTTTHHHHG--GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHH
T ss_pred HHHhccCccccC--cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHH
Confidence 555555555554 579999999999999999999999999999887755543 223344556677777777666
Q ss_pred HHHhH
Q 004073 704 LMLFR 708 (775)
Q Consensus 704 L~~L~ 708 (775)
|..+.
T Consensus 241 L~rl~ 245 (253)
T 2db0_A 241 ISRLL 245 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.52 Score=45.77 Aligned_cols=211 Identities=15% Similarity=0.154 Sum_probs=141.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHH-HHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYA-QEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~-qe~A~~aL~nLs~~~ 504 (775)
+.+..++..|... -|-+|..|+..|-.+++.-++....+ +..|+-+|+.. +.... |+. +.++..++.-+
T Consensus 32 ~~l~~lI~~LDDD-lwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ks---EaIpltqeI-a~a~G~la~i~ 101 (253)
T 2db0_A 32 SVLKKLIELLDDD-LWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKS---EAIPLTQEI-AKAFGQMAKEK 101 (253)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHC---CSHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHhccH-HHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhc---ccCchHHHH-HHHHhHHHHhC
Confidence 3444566666665 79999999999999999877654443 34566666651 44444 544 56777776432
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
++- + .+++|.|..=+.-|+. +.+-..+|..++... -..+ .+++.-+..||.+. +. .+-+.+|.-+
T Consensus 102 Pe~----v-~~vVp~lfanyrigd~kikIn~~yaLeeIaran--P~l~--~~v~rdi~smltsk-d~---~Dkl~aLnFi 168 (253)
T 2db0_A 102 PEL----V-KSMIPVLFANYRIGDEKTKINVSYALEEIAKAN--PMLM--ASIVRDFMSMLSSK-NR---EDKLTALNFI 168 (253)
T ss_dssp HHH----H-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC--HHHH--HHHHHHHHHHTSCS-SH---HHHHHHHHHH
T ss_pred HHH----H-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhC--hHHH--HHHHHHHHHHhcCC-Ch---HHHHHHHHHH
Confidence 221 1 2456666666666776 355666666554321 1122 35677888999887 74 4445556666
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004073 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
+.-.+|..+-+.- .+|.|..||.+++..++..|+.+|.+||.....-.. .|...++-+...|..++......|
T Consensus 169 ~alGen~~~yv~P-fLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk------ii~~kl~e~~D~S~lv~~~V~egL 241 (253)
T 2db0_A 169 EAMGENSFKYVNP-FLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK------VVIKRLEELNDTSSLVNKTVKEGI 241 (253)
T ss_dssp HTCCTTTHHHHGG-GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH------HHHHHHHHCCCSCHHHHHHHHHHH
T ss_pred HHHhccCccccCc-chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH------HHHHHHHHhcCcHHHHHHHHHHHH
Confidence 6667787777654 889999999999999999999999999986544322 344456667788888888877777
Q ss_pred HHhh
Q 004073 663 FLLC 666 (775)
Q Consensus 663 ~~Lc 666 (775)
..|.
T Consensus 242 ~rl~ 245 (253)
T 2db0_A 242 SRLL 245 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.031 Score=62.23 Aligned_cols=222 Identities=12% Similarity=0.044 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHHhhccCCchhHHHHhhC--cHHHHHHHhccC----C------------h---HHHHHHHHhcccccC
Q 004073 486 NSYAQEIGAMALFNLAVNNNRNKELMLAAG--VIPLLEKMISNS----N------------S---HGAATALYLNLSFLD 544 (775)
Q Consensus 486 d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G--~i~~Lv~lL~s~----~------------~---~~~AaaaL~~Ls~~~ 544 (775)
+...|..|+.+|-.|.. .++.|..+.+.+ .+|+++.++... . . .=.++-++..|+..+
T Consensus 181 ~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~ 259 (480)
T 1ho8_A 181 QMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP 259 (480)
T ss_dssp CHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH
T ss_pred CCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCH
Confidence 45567788888888864 677888887543 578887665421 1 1 122555566677776
Q ss_pred CccccccccCch--HHHHHhhcCCCCHHHHHHHHHHHHHhcCCC-CChHH----HH-HcCcHHHHHHhccC---CChHHH
Q 004073 545 DAKPIIGSSHAV--PFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPN----LL-SAGIISGLQSLAVP---GDPMWT 613 (775)
Q Consensus 545 ~~k~~I~~~g~i--~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~-~nk~~----iv-~aG~V~~Lv~LL~~---~~~~i~ 613 (775)
+....+...+.+ +.|+.+++......+.+-++.+|.||.... ++... ++ ..++ +++++.|.. .+..+.
T Consensus 260 ~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~ 338 (480)
T 1ho8_A 260 VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELR 338 (480)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHH
Confidence 655555545533 778888887657899999999999998654 22222 22 3444 556665543 355544
Q ss_pred HHHHHHHHHH-------hC---------------CcccHH---------HHhh-CCCcHHHHHHHhcC----------CC
Q 004073 614 EKSLAVLLNL-------AA---------------SAAGKE---------EMNS-TPGLVSGLATVLDT----------GE 651 (775)
Q Consensus 614 e~al~~L~nL-------a~---------------~~e~~~---------~i~~-~~g~I~~Lv~lL~~----------~s 651 (775)
+..-.+...| ++ ++-.+. .+.+ ....+..|+++|.+ .+
T Consensus 339 edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d 418 (480)
T 1ho8_A 339 QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQE 418 (480)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCC
Confidence 4333322222 11 111111 1211 12457889999973 24
Q ss_pred HHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 652 LIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 652 ~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
+.+..-|+.=+..+++..|..+..+-+.|+=..++.|+.+.++++|..|...++.+-.
T Consensus 419 ~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 419 KIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred cceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5566666666777887777788888888987788899999999999999988876543
|
| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0039 Score=49.50 Aligned_cols=48 Identities=19% Similarity=0.350 Sum_probs=40.0
Q ss_pred CccccccccccccCceecCCCC-----ccchHHHHHHHh-cCCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDPVIIASGQ-----TYERICIEKWLS-DGHSTCPKTQQKLP 328 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G~-----ty~r~~I~~w~~-~~~~~CP~t~~~l~ 328 (775)
+.-.|.||++-..+|.+.||.. -|=+.|+++|+. .++.+||+|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3557999998888998888643 788999999997 46789999998875
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.019 Score=62.25 Aligned_cols=208 Identities=13% Similarity=0.068 Sum_probs=101.1
Q ss_pred hHHHHHHH-HHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLN-VLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~-~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+.+...+. .|.+. ++-++..|+-....+...+++. ++ ++++.+-+++.+ .++.++.+|+.+|..+.. +
T Consensus 138 ~~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~pe~----v~-~~~~~l~~ll~d----~n~~V~~~Al~lL~ei~~-~ 206 (355)
T 3tjz_B 138 QAIERYMKQAIVDK-VPSVSSSALVSSLHLLKCSFDV----VK-RWVNEAQEAASS----DNIMVQYHALGLLYHVRK-N 206 (355)
T ss_dssp HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTCHHH----HH-TTHHHHHHHTTC----SSHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCHHH----HH-HHHHHHHHHhcC----CCccHHHHHHHHHHHHHh-h
Confidence 44444444 55565 8999999999999999887764 22 688889899987 799999999999999963 2
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh-HHHHH-HHHh---cccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS-HGAAT-ALYL---NLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL 579 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~-~~~Aa-aaL~---~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL 579 (775)
+ +. ++..|+..|..+.. ...+. .+|. .+...++. -.....++.|..+|++. ++.+.-.|+++|
T Consensus 207 d--~~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~-~~aVvyEa~k~I 274 (355)
T 3tjz_B 207 D--RL------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNK-HEMVVYEAASAI 274 (355)
T ss_dssp C--HH------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCS-SHHHHHHHHHHH
T ss_pred c--hH------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence 2 22 34555666655421 12222 2222 22222200 01134567777888887 999999999999
Q ss_pred HHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHH
Q 004073 580 YNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAV 659 (775)
Q Consensus 580 ~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av 659 (775)
..|...+.. +...++..|..+|.+.++.++-.|+..|..++....+. +. .+-..+..++.+++..+...|+
T Consensus 275 ~~l~~~~~~----~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~---v~--~~n~~ie~li~d~n~sI~t~Ai 345 (355)
T 3tjz_B 275 VNLPGCSAK----ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA---VT--ACNLDLENLVTDANRSIATLAI 345 (355)
T ss_dssp TC---------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred HhccCCCHH----HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH---HH--HHHHHHHHHccCCcHhHHHHHH
Confidence 998653221 22345677777888888888899999988887754322 21 3456677888888888888888
Q ss_pred HHHHHh
Q 004073 660 SCLFLL 665 (775)
Q Consensus 660 ~~L~~L 665 (775)
.+|+.-
T Consensus 346 ttllkt 351 (355)
T 3tjz_B 346 TTLLKT 351 (355)
T ss_dssp ------
T ss_pred HHhhhc
Confidence 888764
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.039 Score=61.47 Aligned_cols=233 Identities=13% Similarity=0.107 Sum_probs=147.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhcc-C-chHHHHHHhchhccC-------------CCHHHHHHHH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGAN-G-FVVALLRFLESAVCE-------------RNSYAQEIGA 494 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~-G-~I~~Lv~lL~s~~~~-------------~d~~~qe~A~ 494 (775)
.++..|....+.+.+.-++..|..++.. ++.|..+.+. | .+++++.++....++ ....+|.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 3555666532456677788889888876 6788887764 3 578888777643211 1356789999
Q ss_pred HHHHHhhccCCchhHHHHhhCcH--HHHHHHhccCCh---HHHHHHHHhcccccC--Cccc----cccccCchHHHHHhh
Q 004073 495 MALFNLAVNNNRNKELMLAAGVI--PLLEKMISNSNS---HGAATALYLNLSFLD--DAKP----IIGSSHAVPFLVELC 563 (775)
Q Consensus 495 ~aL~nLs~~~~~nk~~i~~~G~i--~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~--~~k~----~I~~~g~i~~LV~LL 563 (775)
-++.-|+. ++.....+...+.. +.|+.+++.... ...+.+++.||.... +.+. .+...++ ++++..|
T Consensus 250 l~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L 327 (480)
T 1ho8_A 250 LLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL 327 (480)
T ss_dssp HHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred HHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence 99999976 44455556666643 677777776542 245888999987654 1122 2222344 5566666
Q ss_pred cCC--CCHHHHHHHHHHHHH-------hcCCC------------------------CChHHHHH--cCcHHHHHHhccC-
Q 004073 564 KGK--TEHQCKLDALHALYN-------LSTIP------------------------SNIPNLLS--AGIISGLQSLAVP- 607 (775)
Q Consensus 564 ~~~--~~~~~k~~Al~aL~n-------Ls~~~------------------------~nk~~iv~--aG~V~~Lv~LL~~- 607 (775)
... .|++..++--...-. +++.+ +|..++-+ -.++..|+++|.+
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 543 355555443222111 22111 12223332 1266788888863
Q ss_pred ---------CChHHHHHHHHHHHHHhC-CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 004073 608 ---------GDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 608 ---------~~~~i~e~al~~L~nLa~-~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc 666 (775)
.++.+..-|+.=|..++. .|+||..+-. -|+=..++++|.+.+++++.+|+.++..+-
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~-lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDK-TGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH-HSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 246666667777777777 5777776655 488889999999999999999999887654
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.035 Score=60.03 Aligned_cols=246 Identities=13% Similarity=0.052 Sum_probs=142.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
+...+..+.+. +.+.|+-.--.+..+++..++. | =++..|.+=+.+ .++-++-.|+.+|.++.. ++-
T Consensus 70 f~~v~kl~~s~-d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~----~N~~iR~lALRtL~~I~~--~~m 136 (355)
T 3tjz_B 70 FFAMTKLFQSN-DPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTG----KEDSYRGPAVRALCQITD--STM 136 (355)
T ss_dssp HHHHHGGGGCC-CHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHS----SCHHHHHHHHHHHHHHCC--TTT
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCC----CcHhHHHHHHHHHhcCCC--HHH
Confidence 33445566666 8888888888888888764332 1 223455555555 789999999999999953 322
Q ss_pred hHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 004073 508 KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 585 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~ 585 (775)
- ....+.+...|.+.++ +..|+-+...|. +.+...+ .+++..+-+++.+. ++.+.-+|+.+|+.+...
T Consensus 137 ~-----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~--~~~pe~v--~~~~~~l~~ll~d~-n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 137 L-----QAIERYMKQAIVDKVPSVSSSALVSSLHLL--KCSFDVV--KRWVNEAQEAASSD-NIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp H-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHT--TTCHHHH--HTTHHHHHHHTTCS-SHHHHHHHHHHHHHHHTT
T ss_pred H-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHh--ccCHHHH--HHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhh
Confidence 1 2356677778877776 344444444443 2333344 37899999999988 999999999999999865
Q ss_pred CCChHHHHHcCcHHHHHHhccCC---ChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004073 586 PSNIPNLLSAGIISGLQSLAVPG---DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 586 ~~nk~~iv~aG~V~~Lv~LL~~~---~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
+ +. ++..|+.-+..+ ++-.+-..+.++..++...+.. .....+..|...|++.++.+.=.|+.++
T Consensus 207 d--~~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 207 D--RL------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDSPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp C--HH------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHH
T ss_pred c--hH------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 3 21 455566655443 2333333344443333322111 1135566777778889999999999999
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccCC
Q 004073 663 FLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
..+...+.. . ...++..|..++.+.++.+|--|...|..+....++
T Consensus 275 ~~l~~~~~~----~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~ 320 (355)
T 3tjz_B 275 VNLPGCSAK----E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS 320 (355)
T ss_dssp TC----------------CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred HhccCCCHH----H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence 887653211 1 134567777888889999998888777666655443
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.071 Score=55.28 Aligned_cols=183 Identities=16% Similarity=0.202 Sum_probs=114.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhh--HH-hhccC-chHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC-
Q 004073 431 FLNVLNEGENLGQKCNIVEQIRLLLKDDEEAR--VF-TGANG-FVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN- 505 (775)
Q Consensus 431 Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr--~~-i~~~G-~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~- 505 (775)
|-.+|.+. +|..|.+|+.+|..+........ .. +..-+ .++.+-..+.+ .|..++..|+.+|..++....
T Consensus 14 l~e~l~sk-~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~D----sN~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 14 LEERLTYK-LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITD----SNVVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp HHHHTTCS-SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTC----SSHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHhcccC-cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHhhh
Confidence 45678887 99999999999998876543211 11 11122 34445566665 799999999999888753211
Q ss_pred ---ch-hHHHHhhCcHHHHHHH-hccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHH
Q 004073 506 ---RN-KELMLAAGVIPLLEKM-ISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHA 578 (775)
Q Consensus 506 ---~n-k~~i~~~G~i~~Lv~l-L~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~a 578 (775)
.+ .....-..++|.|+.- |.++.. +..|..++..+....... ..+++.++..+.+. ++.++..++..
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-----~~~~e~l~~~l~~K-npkv~~~~l~~ 162 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-----TQSVELVIPFFEKK-LPKLIAAAANC 162 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-----HHHHHHHGGGGGCS-CHHHHHHHHHH
T ss_pred hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHhcc-CHHHHHHHHHH
Confidence 11 1112234567777764 555543 355666665444322111 12356777778887 99999999999
Q ss_pred HHHhcCC--CC--ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC
Q 004073 579 LYNLSTI--PS--NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 579 L~nLs~~--~~--nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~ 625 (775)
|..+... .. +-...+. .+++.+..+|.+.+..+++.|..++..+-.
T Consensus 163 l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 163 VYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 9987532 11 2222222 255567778889999999999999988765
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.56 E-value=0.54 Score=56.81 Aligned_cols=224 Identities=11% Similarity=-0.013 Sum_probs=141.8
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhcc-CC---CHHHHHHHHHHHHHhhccCCchhHHHHhhC
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVC-ER---NSYAQEIGAMALFNLAVNNNRNKELMLAAG 515 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~-~~---d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G 515 (775)
+..++..|+..|..+..+... .++..|...|.+... .. .+.++..|+..|.-...+.. + ..
T Consensus 408 ~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-~------ee 472 (963)
T 4ady_A 408 SRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-N------IE 472 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-C------HH
T ss_pred cHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-C------HH
Confidence 678899999999988766431 156778888876310 01 25677777777776543222 1 13
Q ss_pred cHHHHHHHhccCChH--HHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHH
Q 004073 516 VIPLLEKMISNSNSH--GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLL 593 (775)
Q Consensus 516 ~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv 593 (775)
+++.|..+|...+.. +.|+-+|..+-.... +..++..|+..+.+..+..+++.++.+|..+....+
T Consensus 473 v~e~L~~~L~dd~~~~~~~AalALGli~vGTg------n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~------ 540 (963)
T 4ady_A 473 VYEALKEVLYNDSATSGEAAALGMGLCMLGTG------KPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ------ 540 (963)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC------CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh------
Confidence 567788888766542 334444432212111 124677787776544378899999999988865433
Q ss_pred HcCcHHHHHHhcc-CCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCChH
Q 004073 594 SAGIISGLQSLAV-PGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD-TGELIEQEQAVSCLFLLCNGNEK 671 (775)
Q Consensus 594 ~aG~V~~Lv~LL~-~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e~Av~~L~~Lc~~~~~ 671 (775)
..++.+++.|. +.++-++..++.++..-.....+. ..|..|++.+. +.++.+|..|+..|..+..+++
T Consensus 541 --e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~- 610 (963)
T 4ady_A 541 --ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY- 610 (963)
T ss_dssp --GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH-
Confidence 36777788664 456666666666665443333222 23555666554 5678899999999988877653
Q ss_pred hHHHHHHCCCHHHHHH-hhhcCChHHHHHHHHHHHHhH
Q 004073 672 CCQMVLQEGVIPALVS-ISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 672 ~~~~v~~~G~i~~Lv~-Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
..++.++. |+..+++.+|..|...|-++.
T Consensus 611 --------e~v~rlv~~L~~~~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 611 --------TTVPRIVQLLSKSHNAHVRCGTAFALGIAC 640 (963)
T ss_dssp --------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 24666664 566788888888888777665
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.92 Score=55.24 Aligned_cols=217 Identities=15% Similarity=0.111 Sum_probs=139.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 509 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~ 509 (775)
.++..+..- ...+|..|-.++..+.+.-+.+ .+ ..++|.|+..|.+. ..-..+..|+.+|-.|+.. . ..
T Consensus 99 ~~~~~~~dk-~~~v~~aa~~~~~~~~~~~~~~--a~--~~~~~~~~~~~~~~---~kw~~k~~~l~~~~~~~~~-~--~~ 167 (986)
T 2iw3_A 99 AICTNAGNK-DKEIQSVASETLISIVNAVNPV--AI--KALLPHLTNAIVET---NKWQEKIAILAAFSAMVDA-A--KD 167 (986)
T ss_dssp HHHHHTTCS-SHHHHHHHHHHHHHHHHHSCGG--GH--HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHH-S--HH
T ss_pred HHHHHhcCC-chHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHH-h--HH
Confidence 344444433 6788888888888887653221 11 56788999988762 3578889999999999742 2 33
Q ss_pred HHHh--hCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 004073 510 LMLA--AGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTI 585 (775)
Q Consensus 510 ~i~~--~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~ 585 (775)
.+.. ...||.+...+..... ...|..++..++..-+|+... ..||.||+.+.++ +. ...++..|..-..-
T Consensus 168 ~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~---~~~~~~~~~~~~p-~~--~~~~~~~l~~~tfv 241 (986)
T 2iw3_A 168 QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE---RFIPSLIQCIADP-TE--VPETVHLLGATTFV 241 (986)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG---GGHHHHHHHHHCT-TH--HHHHHHHHTTCCCC
T ss_pred HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh---hhHHHHHHHhcCh-hh--hHHHHHHhhcCeeE
Confidence 3332 4678887777765443 355667776666555555543 6789999999877 43 33344444444333
Q ss_pred CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCccc---HHHHhhCCCcHHHHHHHhcC-CCHHHHHHHHHH
Q 004073 586 PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG---KEEMNSTPGLVSGLATVLDT-GELIEQEQAVSC 661 (775)
Q Consensus 586 ~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~---~~~i~~~~g~I~~Lv~lL~~-~s~~~~e~Av~~ 661 (775)
.+.-..... =.+|.|.+-|......++.+++-++.|||.-=+. ...++ +..+|.|-+.... ..|++|+.|-.+
T Consensus 242 ~~v~~~~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~~~a 318 (986)
T 2iw3_A 242 AEVTPATLS-IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVTLRA 318 (986)
T ss_dssp SCCCHHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHHHHH
T ss_pred eeecchhHH-HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHHHHH
Confidence 333222221 1455666666777888899999999999984333 33344 3566666666654 689999988888
Q ss_pred HHHhh
Q 004073 662 LFLLC 666 (775)
Q Consensus 662 L~~Lc 666 (775)
+-.|-
T Consensus 319 ~~~l~ 323 (986)
T 2iw3_A 319 LKTLR 323 (986)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87773
|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.004 Score=65.94 Aligned_cols=49 Identities=31% Similarity=0.670 Sum_probs=39.0
Q ss_pred CccccccccccccC----cee----cCCCCccchHHHHHHHhcCC----------CCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYD----PVI----IASGQTYERICIEKWLSDGH----------STCPKTQQKLPH 329 (775)
Q Consensus 281 ~~f~CPIs~~~m~d----PV~----~~~G~ty~r~~I~~w~~~~~----------~~CP~t~~~l~~ 329 (775)
...-|+||...+.+ |-. ..|||.|-..||.+||.... .+||.|+++++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 34579999999988 533 36999999999999997421 469999998753
|
| >3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.021 Score=49.53 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=38.1
Q ss_pred ccccccccccCce-ecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 284 RCPISLQLMYDPV-IIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 284 ~CPIs~~~m~dPV-~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
.||+|.-....=. ++||+|.||-.|+..|...+..+||.|++++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4777766555544 679999999999999998889999999988764
|
| >3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.024 Score=61.00 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=52.5
Q ss_pred ccccccccccccCceec-CCCCc--cchHHHHHHHh-cCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 004073 282 ELRCPISLQLMYDPVII-ASGQT--YERICIEKWLS-DGHSTCPKTQQKLPHLCLTPNYCVKGLIA 343 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~-~~G~t--y~r~~I~~w~~-~~~~~CP~t~~~l~~~~l~pn~~l~~~i~ 343 (775)
.+.|||+...|..||-. .|.|. ||...+..... .+...||+|++.+....|+...-+...+.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 68999999999999965 79987 99988887654 56788999999999899998877776664
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.16 E-value=1.7 Score=44.26 Aligned_cols=231 Identities=13% Similarity=0.108 Sum_probs=146.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhh-ccCchHHHHHHhchhccC---C--C---HHHHHHHHHH
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTG-ANGFVVALLRFLESAVCE---R--N---SYAQEIGAMA 496 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~-~~G~I~~Lv~lL~s~~~~---~--d---~~~qe~A~~a 496 (775)
+.+..++..|..+ +.|..|+.+|..--..-++.-..+= ..|.|..|++=+-+-... . . ..-..+|+..
T Consensus 3 ~~i~qli~~L~~p---~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaL 79 (268)
T 2fv2_A 3 EKIYQWINELSSP---ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALAL 79 (268)
T ss_dssp HHHHHHHHHTSST---TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc---hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHH
Confidence 4566777777655 4566776666543222233222333 368888887644331110 0 1 1122556666
Q ss_pred HHHhhccCCchhHHHHhhCcHHHHHHHhccCCh-------HHHHHHHHhcccccCCcc--ccccccCchHHHHHhhcCCC
Q 004073 497 LFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS-------HGAATALYLNLSFLDDAK--PIIGSSHAVPFLVELCKGKT 567 (775)
Q Consensus 497 L~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~-------~~~AaaaL~~Ls~~~~~k--~~I~~~g~i~~LV~LL~~~~ 567 (775)
|--+|. +++-|..++++...--|-.+|+..+. +-.+.+++..|...++.- ..+.+.+.||..++.+..|
T Consensus 80 lQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G- 157 (268)
T 2fv2_A 80 LQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG- 157 (268)
T ss_dssp HHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS-
T ss_pred HHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc-
Confidence 666775 78899999999877777777876653 234777887777654421 1333578999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCh-------HHHHH-cCcHHHHHH-hccCCChHHHHHHHHHHHHHhCCcccHHHHhhC--
Q 004073 568 EHQCKLDALHALYNLSTIPSNI-------PNLLS-AGIISGLQS-LAVPGDPMWTEKSLAVLLNLAASAAGKEEMNST-- 636 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~~nk-------~~iv~-aG~V~~Lv~-LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~-- 636 (775)
+.-.|..|.-++..+-.++..- .++-. +.++..+|. +..++++.+...++..-..|+.++.++.++...
T Consensus 158 selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP 237 (268)
T 2fv2_A 158 SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLP 237 (268)
T ss_dssp CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCc
Confidence 9999999999888876554422 22222 235555565 556788999999999999999999999887541
Q ss_pred ----CCcHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004073 637 ----PGLVSGLATVLDTGELIEQEQAVSCLFLL 665 (775)
Q Consensus 637 ----~g~I~~Lv~lL~~~s~~~~e~Av~~L~~L 665 (775)
.|.... ++ .+++..+..-...|.|+
T Consensus 238 ~~Lrd~tf~~---~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 238 DQLKDTTFAQ---VL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp GGGTSSTTHH---HH-TSCHHHHHHHHHHHHHS
T ss_pred HHhhChHHHH---HH-hcCHHHHHHHHHHHHhc
Confidence 122222 22 35677777655555554
|
| >4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B | Back alignment and structure |
|---|
Probab=93.13 E-value=0.065 Score=57.43 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=53.7
Q ss_pred CccccccccccccCceec-CCCCc--cchHHHHHHHh-cCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 004073 281 EELRCPISLQLMYDPVII-ASGQT--YERICIEKWLS-DGHSTCPKTQQKLPHLCLTPNYCVKGLIAS 344 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~-~~G~t--y~r~~I~~w~~-~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~ 344 (775)
-.+.|||+...|..||-. .|.|. ||...+..... .+...||+|++.+...+|.-..-+...+.+
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 468999999999999975 79887 99998888765 567889999999988889888777777653
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=92.75 E-value=1 Score=55.05 Aligned_cols=255 Identities=11% Similarity=0.104 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHH----hchh--ccCCCHHHHHHHHHHHHHhhccCCchhHHHHhh
Q 004073 441 LGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRF----LESA--VCERNSYAQEIGAMALFNLAVNNNRNKELMLAA 514 (775)
Q Consensus 441 ~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~l----L~s~--~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~ 514 (775)
...+..|...|..++..-. .. .++.++.+ |... ....+...++.|+.++..++......... ...
T Consensus 375 ~s~R~aa~~~L~~l~~~~~---~~-----v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~-~~~ 445 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNE---VL-----VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAG-VSS 445 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCH---HH-----HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTB-CCC
T ss_pred cCcHHHHHHHHHHHHHHcc---hh-----HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCC-ccc
Confidence 4567777778888876532 11 23334443 3310 01256778899999999997421100000 000
Q ss_pred -----CcHHHH----HHHhccC---Ch--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHH
Q 004073 515 -----GVIPLL----EKMISNS---NS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY 580 (775)
Q Consensus 515 -----G~i~~L----v~lL~s~---~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~ 580 (775)
...+.+ +..|.+. +. +..|++++..++..- .+.. -..+++.++..|.+. +..++..|+.||.
T Consensus 446 ~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~-~~~V~~~A~~Al~ 521 (960)
T 1wa5_C 446 TNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTD-EYVVYTYAAITIE 521 (960)
T ss_dssp BCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCC-ChhHHHHHHHHHH
Confidence 222322 2334444 33 567888888777542 1111 145788899988887 8999999999999
Q ss_pred HhcCCCC---------ChHHHHH--cCcHHHHHHhccCCC---hH--HHHHHHHHHHHHhCCc-ccHHHHhhCCCcHHHH
Q 004073 581 NLSTIPS---------NIPNLLS--AGIISGLQSLAVPGD---PM--WTEKSLAVLLNLAASA-AGKEEMNSTPGLVSGL 643 (775)
Q Consensus 581 nLs~~~~---------nk~~iv~--aG~V~~Lv~LL~~~~---~~--i~e~al~~L~nLa~~~-e~~~~i~~~~g~I~~L 643 (775)
+++...+ .+..+.. ..+++.|+.++.... .. ..+.++.+|..++..- +.-..+.. ..++.|
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L 599 (960)
T 1wa5_C 522 KILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQF 599 (960)
T ss_dssp HHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHH
T ss_pred HHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHH
Confidence 9986422 2333321 335555666665531 11 2245556665554321 11111111 234444
Q ss_pred HHHhc----C-CCHHHHHHHHHHHHHhhcC-ChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 644 ATVLD----T-GELIEQEQAVSCLFLLCNG-NEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 644 v~lL~----~-~s~~~~e~Av~~L~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
+..+. + .++.....++.+|..++.. +++.. .-....++|.+..++.+......+.+..++..+....
T Consensus 600 ~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~-~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 600 IEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNL-PLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGH-HHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 44443 2 3566777788888888765 33332 2334457788888888777778888888888777665
|
| >2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.059 Score=47.07 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=29.6
Q ss_pred Cccccccccc-cccCcee--cCCCCccchHHHHHHHh
Q 004073 281 EELRCPISLQ-LMYDPVI--IASGQTYERICIEKWLS 314 (775)
Q Consensus 281 ~~f~CPIs~~-~m~dPV~--~~~G~ty~r~~I~~w~~ 314 (775)
+++.|+||.+ .+.+||. +.|||+||+.|++.|..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4689999996 4899999 89999999999999443
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.91 E-value=0.8 Score=47.16 Aligned_cols=151 Identities=12% Similarity=0.100 Sum_probs=101.2
Q ss_pred CchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC----ChHH--HHHcCcHHHHHH-hccCCChHHHHHHHHHHHHHhCC
Q 004073 554 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS----NIPN--LLSAGIISGLQS-LAVPGDPMWTEKSLAVLLNLAAS 626 (775)
Q Consensus 554 g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~----nk~~--iv~aG~V~~Lv~-LL~~~~~~i~e~al~~L~nLa~~ 626 (775)
..++.+-+.+.+. |..+...|+.+|..++.... .+.. ..-..+++.|++ .|.+....++..++.+|..++..
T Consensus 55 ~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~ 133 (278)
T 4ffb_C 55 RDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133 (278)
T ss_dssp SCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 3455666778777 99999999999998875322 2222 223567888887 57888888889999888877653
Q ss_pred cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-ChHh--HHHHHHCCCHHHHHHhhhcCChHHHHHHHHH
Q 004073 627 AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNG-NEKC--CQMVLQEGVIPALVSISVNGSTRGRDKAQRL 703 (775)
Q Consensus 627 ~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~-~~~~--~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~L 703 (775)
..... .++..++..+.+.+|.++..++..|..+... .... ....+ ..+++.|..++.+.++.+|..|..+
T Consensus 134 ~~~~~------~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l 206 (278)
T 4ffb_C 134 DTSIT------QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNL 206 (278)
T ss_dssp SSSSH------HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHH
T ss_pred cCcHH------HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 32211 1234555667788999999999988876532 1111 11111 1245566778899999999999998
Q ss_pred HHHhHhccC
Q 004073 704 LMLFREQRQ 712 (775)
Q Consensus 704 L~~L~~~~~ 712 (775)
+--+-.+-.
T Consensus 207 ~~~ly~~~G 215 (278)
T 4ffb_C 207 IVEIYKVTG 215 (278)
T ss_dssp HHHHHTC--
T ss_pred HHHHHHHhC
Confidence 877765543
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.37 E-value=0.81 Score=48.26 Aligned_cols=147 Identities=17% Similarity=0.131 Sum_probs=98.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHH--cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc---ccHHH
Q 004073 558 FLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS--AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA---AGKEE 632 (775)
Q Consensus 558 ~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~--aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~---e~~~~ 632 (775)
.+...+.+..++..+..+++++.|+-.++..+..+.. .-+++.+...+.+.+..++..+..++.|++... ...+.
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~ 230 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG 230 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence 3444444333566789999999999888887777765 235555666666678888899999999998621 11111
Q ss_pred HhhCCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc-CChHHHHHHHHHHHHh
Q 004073 633 MNSTPGLVSGLATVLDT-GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLMLF 707 (775)
Q Consensus 633 i~~~~g~I~~Lv~lL~~-~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~-g~~~~k~kA~~LL~~L 707 (775)
. ..++..+..++.. .+++..-.++.+|.+|...+.+..+.+..-|+-..+-.+... ..+++.+.|..+|..|
T Consensus 231 ~---~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l 304 (304)
T 3ebb_A 231 K---AQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL 304 (304)
T ss_dssp H---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred H---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence 1 1133444445543 578888889999999998776666666666655554455544 5788899999888654
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.70 E-value=1.4 Score=46.42 Aligned_cols=174 Identities=16% Similarity=0.096 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHH-HhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhh--Cc
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLR-FLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAA--GV 516 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~-lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~--G~ 516 (775)
+.+.+.-++..+|.++.+ +.....+.+.+.-..++. ++........+..+.-+++++.|+- .+...+..+... .+
T Consensus 115 P~~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF-~~~~g~~~l~~~~~~i 192 (304)
T 3ebb_A 115 PEDIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCF-VGQAGQKLMMSQRESL 192 (304)
T ss_dssp CTTTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGG-GSHHHHHHHHHTHHHH
T ss_pred CHHhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHcc-CCchhHHHHHHHHHHH
Confidence 556777788888887764 444444444322233332 2221111245667888999999994 466677777652 35
Q ss_pred HHHHHHHhccCCh--HHHHHHHHhcccccCCcccccc-ccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHH
Q 004073 517 IPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIG-SSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLL 593 (775)
Q Consensus 517 i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~-~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv 593 (775)
++.+...+.+.+. +..++.+++|++........+- ...++..+..++....+.++.-.++.||.+|...+.....+.
T Consensus 193 l~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~la 272 (304)
T 3ebb_A 193 MSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLA 272 (304)
T ss_dssp HHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHH
Confidence 5555555544433 3456666689887421111111 123455666677655589999999999999997665555555
Q ss_pred H-cCcHHHHHHhccC-CChHHHHH
Q 004073 594 S-AGIISGLQSLAVP-GDPMWTEK 615 (775)
Q Consensus 594 ~-aG~V~~Lv~LL~~-~~~~i~e~ 615 (775)
+ -|+-..+-.+... ....+.+.
T Consensus 273 k~l~~~~~v~~~~~~~~~~kv~~~ 296 (304)
T 3ebb_A 273 KSLGVDSQIKKYSSVSEPAKVSEC 296 (304)
T ss_dssp HHTTHHHHGGGGGGCCSSHHHHHH
T ss_pred HHcCHHHHHHHHHhCCCchhHHHH
Confidence 4 3444333334433 23444333
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.35 E-value=2.3 Score=43.40 Aligned_cols=172 Identities=14% Similarity=0.121 Sum_probs=123.7
Q ss_pred HHHHHHHhcccccCCccccccccCchHHHHHhhcCCC----CHHHHHHHHHHHHHhcCCC--CChHHHHHcCcHHHHHHh
Q 004073 531 GAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKT----EHQCKLDALHALYNLSTIP--SNIPNLLSAGIISGLQSL 604 (775)
Q Consensus 531 ~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~----~~~~k~~Al~aL~nLs~~~--~nk~~iv~aG~V~~Lv~L 604 (775)
.+|.+.+..++.+++.|..+.+....-.|--.|+... -+-.+-.+++++..|...+ +....+.+.++||..++.
T Consensus 74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri 153 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 153 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence 5688888889999999999888776555555565441 1357888999999998543 356666789999999999
Q ss_pred ccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCc-------HHHHHH-HhcCCCHHHHHHHHHHHHHhhcCChHhHHHH
Q 004073 605 AVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGL-------VSGLAT-VLDTGELIEQEQAVSCLFLLCNGNEKCCQMV 676 (775)
Q Consensus 605 L~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~-------I~~Lv~-lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v 676 (775)
+..|+.--+..|.-++..+-.++.|...+..+..= +..+|. +....+++.-.+.+++-..|+.+. ..+..+
T Consensus 154 me~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~-rar~aL 232 (268)
T 2fv2_A 154 MESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP-RAREAL 232 (268)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH-HHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH-HHHHHH
Confidence 99998888888999999998888888877654322 222222 224679999999999999998764 555555
Q ss_pred HHC-------CCHHHHHHhhhcCChHHHHHHHHHHHHh
Q 004073 677 LQE-------GVIPALVSISVNGSTRGRDKAQRLLMLF 707 (775)
Q Consensus 677 ~~~-------G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L 707 (775)
.+. |.+..++ .+++.+|+.=..++.++
T Consensus 233 ~~~LP~~Lrd~tf~~~l----~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 233 RQCLPDQLKDTTFAQVL----KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHSCGGGTSSTTHHHH----TSCHHHHHHHHHHHHHS
T ss_pred HHhCcHHhhChHHHHHH----hcCHHHHHHHHHHHHhc
Confidence 442 3333222 36777888777777665
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=90.26 E-value=9.6 Score=40.40 Aligned_cols=197 Identities=14% Similarity=0.033 Sum_probs=137.4
Q ss_pred hhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHH---h--hCcHHHHHHHhccCChHHHHHHHHhc
Q 004073 465 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELML---A--AGVIPLLEKMISNSNSHGAATALYLN 539 (775)
Q Consensus 465 i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~---~--~G~i~~Lv~lL~s~~~~~~AaaaL~~ 539 (775)
+...+.+..|+..|.. -+-+.+..++.+..++-.....++...+ . ...+..|+.-....+.--.+-.+|..
T Consensus 74 i~~~dll~~Li~~l~~----L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 74 LYNSGLLSTLVADLQL----IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHSHHHHHHHTGGG----SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhccc----CCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 4556888999998887 7888999988888887543333322222 1 22344444433333323344445555
Q ss_pred ccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHcC---cHHHHHHhccCCChHHHHH
Q 004073 540 LSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPS-NIPNLLSAG---IISGLQSLAVPGDPMWTEK 615 (775)
Q Consensus 540 Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~-nk~~iv~aG---~V~~Lv~LL~~~~~~i~e~ 615 (775)
...++.....|..++.+-.+.+.+..+ +-++..+|..++..|-+.+. -....+... .....-.||.+++-.++..
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 666665555555667788888999988 99999999999999865432 333333322 4555667899999999999
Q ss_pred HHHHHHHHhCCcccHHHH---hhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 004073 616 SLAVLLNLAASAAGKEEM---NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 616 al~~L~nLa~~~e~~~~i---~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc 666 (775)
++..|..|-..+.+..-+ +.+..-+..++.+|++.+..+|-.|..++--..
T Consensus 229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV 282 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV 282 (341)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeee
Confidence 999999998887776544 445567888999999999999999998875433
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=89.68 E-value=2.7 Score=43.33 Aligned_cols=179 Identities=12% Similarity=0.091 Sum_probs=112.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhc--cCCch
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAV--NNNRN 507 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~--~~~~n 507 (775)
.+...|-+. ++..+.+|+..|......+++ .++.. +..+++.+.-...+.+..+...++.+|..+.. .....
T Consensus 50 ~~~~~lfs~-d~k~~~~ale~L~~~l~~~~~--~~~~~---lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 50 SLMSQLFHK-DFKQHLAALDSLVRLADTSPR--SLLSN---SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHTCS-CHHHHHHHHHHHHHHHHHCHH--HHHHT---HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHhhhChH--HHHHH---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 455667676 899999999999988765443 22222 22333322211112688888888877766521 01111
Q ss_pred hHHHHh-hCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004073 508 KELMLA-AGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 508 k~~i~~-~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
+..-.+ .-.+|.|+.-|..... ++.+-.++..+... ......++.+++-+++. |.+.+..++..|..+-.
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSK-NARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 111112 2378999888854443 34455444433321 11134678888888888 99999999999988864
Q ss_pred CCCChHHHHHcCcH---HHHHHhccCCChHHHHHHHHHHHHHhC
Q 004073 585 IPSNIPNLLSAGII---SGLQSLAVPGDPMWTEKSLAVLLNLAA 625 (775)
Q Consensus 585 ~~~nk~~iv~aG~V---~~Lv~LL~~~~~~i~e~al~~L~nLa~ 625 (775)
..+-. ...++ +.+..++.+.+..+++.|+.++..+-.
T Consensus 197 ~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred hcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 33322 24478 999999999999999999998886543
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=89.57 E-value=1.8 Score=47.18 Aligned_cols=102 Identities=16% Similarity=0.040 Sum_probs=77.1
Q ss_pred ChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCh-Hh-HHHHHH--------
Q 004073 609 DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNE-KC-CQMVLQ-------- 678 (775)
Q Consensus 609 ~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~-~~-~~~v~~-------- 678 (775)
+......++.+|..|.....|...++.++.+|..|+..|.+..+.++..|+.+|..+|..+. +. ...+++
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~ 212 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 212 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHh
Confidence 34666789999999999999999999999999999999999999999999999999997542 21 222222
Q ss_pred --CCCHHHHHHhhhc-CChHHHHHHHHHHHHhHhc
Q 004073 679 --EGVIPALVSISVN-GSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 679 --~G~i~~Lv~Ll~~-g~~~~k~kA~~LL~~L~~~ 710 (775)
..-+..++..+.+ .+...+..+..++..+-..
T Consensus 213 ~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~ 247 (383)
T 3eg5_B 213 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITP 247 (383)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcC
Confidence 2457777876665 4556666666666655543
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=88.71 E-value=10 Score=38.06 Aligned_cols=181 Identities=20% Similarity=0.140 Sum_probs=106.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhcc-------CCCHHHHHHHHHHHHHhhc
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVC-------ERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~-------~~d~~~qe~A~~aL~nLs~ 502 (775)
.++..|.++...+.-.+.+..|+...+.++..+..=...||+..|+.+|..... ..+...+...+.+|..+.
T Consensus 4 ~yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm- 82 (233)
T 2f31_A 4 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM- 82 (233)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-
Confidence 345666655233333355667776666665444332257889999999875322 124677888899999884
Q ss_pred cCCchhHHHHh-hCcHHHHHHHhccCChH--HHHHHHHhcccccCC--c-ccc----------ccccCchHHHHHhhcCC
Q 004073 503 NNNRNKELMLA-AGVIPLLEKMISNSNSH--GAATALYLNLSFLDD--A-KPI----------IGSSHAVPFLVELCKGK 566 (775)
Q Consensus 503 ~~~~nk~~i~~-~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~--~-k~~----------I~~~g~i~~LV~LL~~~ 566 (775)
++......++. .+++..|+..|.+.... ..++-+|..++..++ + -.. .++..-..++|+.|++.
T Consensus 83 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 83 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 162 (233)
T ss_dssp SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence 44445555554 67899999999877653 445544544444332 2 111 12234567889888865
Q ss_pred CCHHHHHHHHHHHHHhcCCCCC-------hHHHHHcCcHHHHHHhccCCChH
Q 004073 567 TEHQCKLDALHALYNLSTIPSN-------IPNLLSAGIISGLQSLAVPGDPM 611 (775)
Q Consensus 567 ~~~~~k~~Al~aL~nLs~~~~n-------k~~iv~aG~V~~Lv~LL~~~~~~ 611 (775)
.+.+.+..++..+-.|....++ |..+..+|..+.|-.+=...++.
T Consensus 163 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~ 214 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENED 214 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHH
Confidence 3667766655555555555543 44455677666665543333443
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=87.16 E-value=20 Score=43.51 Aligned_cols=218 Identities=9% Similarity=0.036 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhh---c-cCchHHHHH----HhchhccCCCHHHHHHHHHHHHHhhccCCchhHHH
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVFTG---A-NGFVVALLR----FLESAVCERNSYAQEIGAMALFNLAVNNNRNKELM 511 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~---~-~G~I~~Lv~----lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i 511 (775)
+|..+..|+..+..++.........+. . ....+.++. .|.+.. ...+.++..|+++|..++..- .+.
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~-~~~p~vr~~a~~~lg~~~~~~--~~~-- 492 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNN-IPHIILRVDAIKYIYTFRNQL--TKA-- 492 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSS-CSCHHHHHHHHHHHHHTGGGS--CHH--
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCC-CCCceehHHHHHHHHHHHhhC--CHH--
Confidence 788999999999999864211110000 0 023333333 334311 127899999999999997432 222
Q ss_pred HhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCC---------ccccccc--cCchHHHHHhhcCCC-C-HH--HHHH
Q 004073 512 LAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD---------AKPIIGS--SHAVPFLVELCKGKT-E-HQ--CKLD 574 (775)
Q Consensus 512 ~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~---------~k~~I~~--~g~i~~LV~LL~~~~-~-~~--~k~~ 574 (775)
.-..+++.++..|.+.+. +..|+.+|.++....+ .+..+.. ...++.|+.++.... . .. ..+.
T Consensus 493 ~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 493 QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 134578888888876654 4778899988776422 2333432 346667777777630 0 11 2345
Q ss_pred HHHHHHHhcC--CCCChHHHHHcCcHHHHHHhc----cC-CChHHHHHHHHHHHHHhCC--cccHHHHhhCCCcHHHHHH
Q 004073 575 ALHALYNLST--IPSNIPNLLSAGIISGLQSLA----VP-GDPMWTEKSLAVLLNLAAS--AAGKEEMNSTPGLVSGLAT 645 (775)
Q Consensus 575 Al~aL~nLs~--~~~nk~~iv~aG~V~~Lv~LL----~~-~~~~i~e~al~~L~nLa~~--~e~~~~i~~~~g~I~~Lv~ 645 (775)
+..+|..++. ..+....+. .+++.|+..+ .+ .++.....++.+|..++.. ++....+.. ..++.+..
T Consensus 573 l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~--~~~p~~~~ 648 (960)
T 1wa5_C 573 LMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD--SMMPTFLT 648 (960)
T ss_dssp HHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH--HHHHHHHH
Confidence 5566655542 122222211 2445555544 22 3556666677777777664 333344443 46777777
Q ss_pred HhcCCCHHHHHHHHHHHHHhh
Q 004073 646 VLDTGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 646 lL~~~s~~~~e~Av~~L~~Lc 666 (775)
+|........+.+..++..+.
T Consensus 649 iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 649 VFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHhhhHhhHHHHHHHHHHHH
Confidence 787655555666666655544
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=85.85 E-value=20 Score=38.87 Aligned_cols=182 Identities=20% Similarity=0.146 Sum_probs=110.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHH-hhccCchHHHHHHhchhc-------cCCCHHHHHHHHHHHHH
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVF-TGANGFVVALLRFLESAV-------CERNSYAQEIGAMALFN 499 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~-i~~~G~I~~Lv~lL~s~~-------~~~d~~~qe~A~~aL~n 499 (775)
-..++..|.++...+.-.+.+..|+.....++-.+.. ++ .+++..|+.+|..-. ...+...|...+.+|..
T Consensus 68 P~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLka 146 (383)
T 3eg5_B 68 AMMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 146 (383)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Confidence 3456777776623333345678888777766554432 44 778999999996421 12356788888999999
Q ss_pred hhccCCchhHHHHh-hCcHHHHHHHhccCCh--HHHHHHHHhcccccCC--c--ccc---------ccccCchHHHHHhh
Q 004073 500 LAVNNNRNKELMLA-AGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--A--KPI---------IGSSHAVPFLVELC 563 (775)
Q Consensus 500 Ls~~~~~nk~~i~~-~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~--~--k~~---------I~~~g~i~~LV~LL 563 (775)
+. ++......++. ..++..|+..|.+... +..|+-+|..++..++ + ... .++..-..++|..|
T Consensus 147 lm-N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L 225 (383)
T 3eg5_B 147 FM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL 225 (383)
T ss_dssp HT-SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTT
T ss_pred Hh-cchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 84 44545555554 5789999999988765 3445555544444332 1 111 23345578899999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCCC-------hHHHHHcCcHHHHHHhccCCChH
Q 004073 564 KGKTEHQCKLDALHALYNLSTIPSN-------IPNLLSAGIISGLQSLAVPGDPM 611 (775)
Q Consensus 564 ~~~~~~~~k~~Al~aL~nLs~~~~n-------k~~iv~aG~V~~Lv~LL~~~~~~ 611 (775)
+++.+.+.+..++..+-.|....++ |..+...|..+.+-.+=...+..
T Consensus 226 ~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~ 280 (383)
T 3eg5_B 226 KSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENED 280 (383)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHH
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChh
Confidence 8754777777665555555554443 34455677777766643333443
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=85.79 E-value=1.6 Score=49.34 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=104.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc-cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA-NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~-~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
.+..++..+... .|+++..++-.|+.+ + ..+.+ .++++.++.-|.+ .|.+++..|+.+|..++ ..
T Consensus 264 IL~qLV~~l~~~-~WEVRHGGLLGLKYL-~------DLL~~Ld~Vv~aVL~GL~D----~DDDVRAVAAetLiPIA--~p 329 (800)
T 3oc3_A 264 IIEQLVGFLDSG-DWQVQFSGLIALGYL-K------EFVEDKDGLCRKLVSLLSS----PDEDIKLLSAELLCHFP--IT 329 (800)
T ss_dssp HHHHHTTGGGCS-CHHHHHHHHHHHHHT-G------GGCCCHHHHHHHHHHHTTC----SSHHHHHHHHHHHTTSC--CS
T ss_pred HHHHHHhhcCCC-CeeehhhhHHHHHHH-H------HHHHHHHHHHHHHHhhcCC----cccHHHHHHHHHhhhhc--ch
Confidence 344444444555 899999999999998 1 12222 5667777777776 78899999999999997 12
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh----HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS----HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~----~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
... ..++..+...|.+-++ ....+..|..|...+.. .-.....+|.|.-.|++. -..++.+++.+|..
T Consensus 330 ~~l-----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~t 401 (800)
T 3oc3_A 330 DSL-----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSP-VPEVRTSILNMVKN 401 (800)
T ss_dssp STH-----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTT
T ss_pred hhH-----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCC-cHHHHHHHHHHHHH
Confidence 111 1234444455544332 33334444444333321 111247899999999998 89999999999988
Q ss_pred hcCCCCChHHHHHcCcHHHHHH-hccCCChHHHHHHHHHHH
Q 004073 582 LSTIPSNIPNLLSAGIISGLQS-LAVPGDPMWTEKSLAVLL 621 (775)
Q Consensus 582 Ls~~~~nk~~iv~aG~V~~Lv~-LL~~~~~~i~e~al~~L~ 621 (775)
+. ...++..+.+ +|-+.+..+.+.+..+..
T Consensus 402 fL----------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 402 LS----------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 87 1224444444 556677888787777764
|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.69 E-value=0.74 Score=46.80 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=35.2
Q ss_pred cccccccccccCceec-CCCCccchHHHHHHHhc-CCCCCCCCCCCCCCC
Q 004073 283 LRCPISLQLMYDPVII-ASGQTYERICIEKWLSD-GHSTCPKTQQKLPHL 330 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~-~~~~CP~t~~~l~~~ 330 (775)
..|.||.++..-=+.= .||+.|-+.|+.+|+.. ++..||.|+.+.+..
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4577777766633222 28999999999999975 467999999876544
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=84.38 E-value=3.8 Score=41.23 Aligned_cols=116 Identities=16% Similarity=0.040 Sum_probs=80.4
Q ss_pred cCcHHHHHHhccC----C-------ChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004073 595 AGIISGLQSLAVP----G-------DPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 595 aG~V~~Lv~LL~~----~-------~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
.||+..|+.+|.. + +......++.+|..|.....|...++.++.+|..|+..|.+..+.++..++.+|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 5666666665531 1 3455678999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCh-Hh-HHHHHH----------CCCHHHHHHhhh-cCChHHHHHHHHHHHHhHhc
Q 004073 664 LLCNGNE-KC-CQMVLQ----------EGVIPALVSISV-NGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 664 ~Lc~~~~-~~-~~~v~~----------~G~i~~Lv~Ll~-~g~~~~k~kA~~LL~~L~~~ 710 (775)
.+|..+. .. ...+++ ..-+..++..+. +.+...+..+..++..+-..
T Consensus 122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~ 181 (233)
T 2f31_A 122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP 181 (233)
T ss_dssp HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCC
Confidence 9996542 12 222222 235566665554 34445555555555555443
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=84.22 E-value=7.3 Score=40.08 Aligned_cols=101 Identities=12% Similarity=0.098 Sum_probs=77.5
Q ss_pred CchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHH-cCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHH
Q 004073 554 HAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS-AGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEE 632 (775)
Q Consensus 554 g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~-aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~ 632 (775)
-.+|.|+.-+.+. ...+++.+-.+|..++. +.- ..+.+.+++-+.+.+...++.++..|..+-..... .
T Consensus 132 ~~lP~LveKlGd~-k~~vR~~~r~il~~l~~-------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~-~- 201 (266)
T 2of3_A 132 AFVPYLLLKTGEA-KDNMRTSVRDIVNVLSD-------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI-S- 201 (266)
T ss_dssp HHHHHHHHGGGCS-SHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS-G-
T ss_pred HHHHHHHHHhCCC-hHHHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC-C-
Confidence 4689999999887 78888888888777652 111 23666777777888899999999999888653222 1
Q ss_pred HhhCCCcH---HHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 004073 633 MNSTPGLV---SGLATVLDTGELIEQEQAVSCLFLLCN 667 (775)
Q Consensus 633 i~~~~g~I---~~Lv~lL~~~s~~~~e~Av~~L~~Lc~ 667 (775)
. ..++ +.+..++.+.+..+|+.|+.++..+..
T Consensus 202 --~-~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 202 --P-LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp --G-GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred --c-cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 1 2468 999999999999999999999987765
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=83.79 E-value=29 Score=37.47 Aligned_cols=182 Identities=20% Similarity=0.138 Sum_probs=107.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhcc-------CCCHHHHHHHHHHHHHhhc
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVC-------ERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~-------~~d~~~qe~A~~aL~nLs~ 502 (775)
.++..|.++...+.-.+.+..|+...+.++-.+..=...||+..|+.+|..... ..+...+...+.+|..+.
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm- 86 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM- 86 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-
Confidence 456667665232222345677777666665444331136889999998864321 125677888899999884
Q ss_pred cCCchhHHHH-hhCcHHHHHHHhccCChH--HHHHHHHhcccccCC--c-cc----------cccccCchHHHHHhhcCC
Q 004073 503 NNNRNKELML-AAGVIPLLEKMISNSNSH--GAATALYLNLSFLDD--A-KP----------IIGSSHAVPFLVELCKGK 566 (775)
Q Consensus 503 ~~~~nk~~i~-~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~~~~--~-k~----------~I~~~g~i~~LV~LL~~~ 566 (775)
++......++ ..+++..|+..|.+.... ..++-+|..++..++ + -. ..++..-..+||+.|.++
T Consensus 87 N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 166 (386)
T 2bnx_A 87 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 166 (386)
T ss_dssp SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred CCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC
Confidence 4444555454 467899999999876653 344444444444332 2 11 112334567899988865
Q ss_pred CCHHHHHHHHHHHHHhcCCCCC-------hHHHHHcCcHHHHHHhccCCChHH
Q 004073 567 TEHQCKLDALHALYNLSTIPSN-------IPNLLSAGIISGLQSLAVPGDPMW 612 (775)
Q Consensus 567 ~~~~~k~~Al~aL~nLs~~~~n-------k~~iv~aG~V~~Lv~LL~~~~~~i 612 (775)
.+.+.+..++..+-.|....++ |..+..+|..+.|-.+=...++.+
T Consensus 167 ~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 167 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 219 (386)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence 4677766655555555555553 455666777777665544445544
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=83.01 E-value=41 Score=40.45 Aligned_cols=156 Identities=11% Similarity=0.043 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHH
Q 004073 439 ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIP 518 (775)
Q Consensus 439 ~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~ 518 (775)
.+|..+..++..|..++..-.+ .....++.++..|..- ..+++.++..++++|..++..-..+.. .-..+++
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~-----~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~--~l~~vl~ 532 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDV-----NYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHPV--MINSVLP 532 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCS-----SCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHH--HHTTTHH
T ss_pred CchHHHHHHHHHHHHHHhhcCc-----hhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHH
Confidence 3888999999999998865332 1134566666665432 124678999999999988632111221 1246888
Q ss_pred HHHHHhccCChHHHHHHHHhcccccCCccccccc--cCchHHHHHhhcCC-CCHHHHHHHHHHHHHhcCCCC--ChHHHH
Q 004073 519 LLEKMISNSNSHGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGK-TEHQCKLDALHALYNLSTIPS--NIPNLL 593 (775)
Q Consensus 519 ~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~--~g~i~~LV~LL~~~-~~~~~k~~Al~aL~nLs~~~~--nk~~iv 593 (775)
.|+..|.+...+..|+.++.+++.. .+..+.. .+.+..|..++..+ .+...+..+..++..++...+ .....+
T Consensus 533 ~l~~~l~~~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~ 610 (963)
T 2x19_B 533 LVLHALGNPELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL 610 (963)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8888887633367788888888743 3333432 34555666777653 257889999999999875433 232222
Q ss_pred HcCcHHHHHHhc
Q 004073 594 SAGIISGLQSLA 605 (775)
Q Consensus 594 ~aG~V~~Lv~LL 605 (775)
...+++++..+
T Consensus 611 -~~l~~~l~~~l 621 (963)
T 2x19_B 611 -HSLISPYIQQL 621 (963)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 23555555543
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=81.82 E-value=2.6 Score=42.84 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHH
Q 004073 641 SGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQR 702 (775)
Q Consensus 641 ~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~ 702 (775)
+.|..++.+.+..++..++..| ..+.|..| .+.+..+++.|..
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l------------------~~~~L~~L-~D~~~~VR~aa~~ 239 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHA------------------SLEALREL-DEPDPEVRLAIAG 239 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHS------------------CHHHHHHC-CCCCHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHcC------------------CHHHHHHc-cCCCHHHHHHHHH
Confidence 3455556666666666665553 14556667 8888888888764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 775 | ||||
| d1t1ha_ | 78 | g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre | 4e-21 | |
| d2c2la2 | 80 | g.44.1.2 (A:225-304) STIP1 homology and U box-cont | 6e-16 | |
| d1jm7a_ | 103 | g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie | 5e-11 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-10 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 4e-04 | |
| d1wgma_ | 98 | g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu | 3e-09 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-07 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-06 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 6e-05 | |
| d1fbva4 | 79 | g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta | 2e-07 | |
| d1rmda2 | 86 | g.44.1.1 (A:1-86) V(D)J recombination activating p | 2e-06 | |
| d1bora_ | 56 | g.44.1.1 (A:) Acute promyelocytic leukaemia proto- | 7e-06 | |
| d1g25a_ | 65 | g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi | 8e-05 | |
| d1jm7b_ | 97 | g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie | 1e-04 | |
| d2baya1 | 56 | g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { | 7e-04 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 0.001 | |
| d1chca_ | 68 | g.44.1.1 (A:) Immediate early protein, IEEHV {Equi | 0.003 |
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 85.9 bits (212), Expect = 4e-21
Identities = 48/75 (64%), Positives = 57/75 (76%)
Query: 277 PLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNY 336
P PE RCPISL+LM DPVI+++GQTYER I+KWL GH TCPK+Q+ L H LTPNY
Sbjct: 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 62
Query: 337 CVKGLIASWCEMNGV 351
+K LIA WCE NG+
Sbjct: 63 VLKSLIALWCESNGI 77
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 71.0 bits (173), Expect = 6e-16
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 339
P+ L IS +LM +P I SG TY+R IE+ L P T+ L L PN +K
Sbjct: 5 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMK 64
Query: 340 GLIASWCEMNG 350
+I ++ NG
Sbjct: 65 EVIDAFISENG 75
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.8 bits (139), Expect = 5e-11
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWL--SDGHSTCPKTQQKLPHLCLTPNYCV 338
+ L CPI L+L+ +PV + + C+ K L G S CP + + L +
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRF 79
Query: 339 KGLI 342
L+
Sbjct: 80 SQLV 83
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.2 bits (149), Expect = 1e-10
Identities = 37/243 (15%), Positives = 73/243 (30%), Gaps = 36/243 (14%)
Query: 473 ALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--- 529
+++L S ++ Q IGA + + + K+ + G I L ++ + N
Sbjct: 6 KAVQYLSS----QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61
Query: 530 HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSN 588
AA AL NL F K + + V L + + + L+NLS+
Sbjct: 62 QAAAGALR-NLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120
Query: 589 IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD 648
L++ + + +P + +
Sbjct: 121 KEELIADALPVLADRVIIP---------------------------FSGWCDGNSNMSRE 153
Query: 649 TGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708
+ A CL L + + M G+I +L++ N R + +
Sbjct: 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMC 213
Query: 709 EQR 711
Sbjct: 214 VLH 216
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 9/117 (7%)
Query: 474 LLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNSHG-- 531
L + + NS GA L N++ + +M + + S++ +
Sbjct: 332 GLPQIARLLQSGNSDVVRSGASLLSNMS-RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNS 390
Query: 532 ------AATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582
A + ++ SS + ++ LC+ + A L ++
Sbjct: 391 EDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (126), Expect = 3e-09
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 279 PPEELRCPISLQLMYDPVIIASGQ-TYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYC 337
+E PI LM DPV++ S + T +R I + T P + L + PN
Sbjct: 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARH-LLSDQTDPFNRSPLTMDQIRPNTE 77
Query: 338 VKGLIASWCE 347
+K I W
Sbjct: 78 LKEKIQRWLA 87
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.1 bits (133), Expect = 1e-08
Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 3/187 (1%)
Query: 505 NRNKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGSSHAVPFLVE 561
N + LA IP L K++++ + + AA ++ I+ S V +V
Sbjct: 7 NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 66
Query: 562 LCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLL 621
+ + + L+NLS + + +G I L + ++ L
Sbjct: 67 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126
Query: 622 NLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGV 681
NL G + G + + +L+ + CL +L GN++ ++L G
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186
Query: 682 IPALVSI 688
ALV+I
Sbjct: 187 PQALVNI 193
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (124), Expect = 1e-07
Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 4/144 (2%)
Query: 483 CERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIP--LLEKMISNSNSHGAATALYLNL 540
++ L L V +++ + + G +E + G AL+ L
Sbjct: 388 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH-IL 446
Query: 541 SFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISG 600
+ + +I + +P V+L E + A L L+ + + G +
Sbjct: 447 ARDVHNRIVIRGLNTIPLFVQLLYSPIE-NIQRVAAGVLCELAQDKEAAEAIEAEGATAP 505
Query: 601 LQSLAVPGDPMWTEKSLAVLLNLA 624
L L + + AVL ++
Sbjct: 506 LTELLHSRNEGVATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (115), Expect = 2e-06
Identities = 29/213 (13%), Positives = 64/213 (30%), Gaps = 9/213 (4%)
Query: 467 ANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISN 526
A + L + L + A+ + L+ +M + ++ + + + N
Sbjct: 15 ATRAIPELTKLLNDE----DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70
Query: 527 SNS----HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582
+N A L+ NLS + I S +P LV++ + L
Sbjct: 71 TNDVETARCTAGTLH-NLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 129
Query: 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSG 642
+ AG + + +L + + + L LA + + G
Sbjct: 130 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQA 189
Query: 643 LATVLDTGELIEQEQAVSCLFLLCNGNEKCCQM 675
L ++ T + S + + +
Sbjct: 190 LVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA 222
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (102), Expect = 6e-05
Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 2/126 (1%)
Query: 593 LSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGEL 652
L+ I L L D + K+ ++ L+ A + + +P +VS + +
Sbjct: 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73
Query: 653 IE-QEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711
+E L L + + + + + G IPALV + + A L +
Sbjct: 74 VETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132
Query: 712 QRDHPP 717
+
Sbjct: 133 EGAKMA 138
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (111), Expect = 2e-07
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 285 CPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 327
C I + D I G C+ W CP + ++
Sbjct: 26 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.5 bits (105), Expect = 2e-06
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKL 327
+ + C I ++ DPV + + RICI + L S CP +
Sbjct: 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68
|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Acute promyelocytic leukaemia proto-oncoprotein PML species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (98), Expect = 7e-06
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
Query: 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 328
+ LRC P ++ T C+E CP Q P
Sbjct: 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48
|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: TFIIH Mat1 subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 8e-05
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 281 EELRCPISLQLMYDP-----VIIASGQTYERICIEKWLSDGHSTCPKTQQKL 327
++ CP Y ++ G T C++ G CP+ L
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53
|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: bard1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 1e-04
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 4/66 (6%)
Query: 281 EELRCPISLQLM-YDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVK 339
+ LRC ++ + + C+ + G C L N +
Sbjct: 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVC---YTPAWIQDLKINRQLD 77
Query: 340 GLIASW 345
+I
Sbjct: 78 SMIQLC 83
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.3 bits (83), Expect = 7e-04
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 283 LRCPISLQLMYDPVIIA-SGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP 334
+ C IS ++ PV+ S +E+ +E+++ D P T + L +
Sbjct: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVE 52
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.8 bits (91), Expect = 0.001
Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 10/211 (4%)
Query: 486 NSYAQEIGAMALFNLA-VNNNRNKELMLAAGVIPLLEKMISNSNS----HGAATALYLNL 540
N +Q A L + ++ AG+IP + ++ +A AL
Sbjct: 26 NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIA 85
Query: 541 SFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISG 600
S + + A+P + L H + + ++ G I
Sbjct: 86 SGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDP 145
Query: 601 LQSLAVPGDPMWTEKSLAVLL-----NLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQ 655
L +L D L NL + +++ ++ L +L +
Sbjct: 146 LLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 205
Query: 656 EQAVSCLFLLCNGNEKCCQMVLQEGVIPALV 686
+ + L +G + +MV+++GV+P LV
Sbjct: 206 ADSCWAISYLTDGPNERIEMVVKKGVVPQLV 236
|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Immediate early protein, IEEHV species: Equine herpesvirus 1 [TaxId: 10326]
Score = 34.5 bits (79), Expect = 0.003
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 284 RCPISLQLMYDPVIIAS-GQTYERICIEKWLSDGHSTCPKTQQKLP 328
RCPI L+ + + + +CI +W+ + TCP + +
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIR-QNPTCPLCKVPVE 51
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 775 | |||
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.88 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.88 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.87 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 99.87 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.86 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 99.84 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 99.8 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.7 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.65 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 99.45 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.4 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 99.4 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.34 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 99.14 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 98.95 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 98.86 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 98.71 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 98.59 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 98.44 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 98.23 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.23 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.1 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.09 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.08 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 98.07 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.02 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 97.88 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.58 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.48 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.34 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.27 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.19 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.15 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.13 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.12 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.08 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.01 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 96.83 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 96.73 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 96.58 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 96.56 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.21 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 96.07 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 95.44 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 94.77 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 90.49 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 89.49 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 88.71 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 81.22 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 81.03 |
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4.8e-22 Score=225.07 Aligned_cols=276 Identities=21% Similarity=0.172 Sum_probs=241.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..++..|....+.+.+..|+..|+.++. +++++..+++.|+||.|+.+|++ .++.++..|+++|.|++.+++.
T Consensus 60 ~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~----~~~~v~~~a~~aL~~l~~~~~~ 134 (529)
T d1jdha_ 60 MVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQEG 134 (529)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhCC----CCHHHHHHHHHHHHHhhcccch
Confidence 466777778765478999999999999986 57889999999999999999988 7999999999999999987777
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC-CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
.+..+.+.|++|.|+.+|++++. +..++.+|.+++..+ +++..+...|++++|+.++.+......+..++++|.+|+
T Consensus 135 ~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls 214 (529)
T d1jdha_ 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 214 (529)
T ss_dssp HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred hhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence 88888899999999999998876 467888999998654 456677778999999999987646889999999999999
Q ss_pred CCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004073 584 TIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 584 ~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
.+++++..+++.|+++.|+.++.+++..+...++++|.+++....... .. .|+++.|++++.++++.+++.|+.+|.
T Consensus 215 ~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~--~~-~~~i~~Lv~ll~~~~~~~~~~a~~~L~ 291 (529)
T d1jdha_ 215 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GM-EGLLGTLVQLLGSDDINVVTCAAGILS 291 (529)
T ss_dssp TSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CC-HHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchh--hh-hhcchhhhhhcccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999986554322 22 378999999999999999999999999
Q ss_pred HhhcCChHhHHHHHHCCCHHHHHHhh--hcCChHHHHHHHHHHHHhHhc
Q 004073 664 LLCNGNEKCCQMVLQEGVIPALVSIS--VNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 664 ~Lc~~~~~~~~~v~~~G~i~~Lv~Ll--~~g~~~~k~kA~~LL~~L~~~ 710 (775)
+|+.++..++..+.+.|+++.|+.++ .+..+.+++.|...|+++...
T Consensus 292 ~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~ 340 (529)
T d1jdha_ 292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred hhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccch
Confidence 99999989999999999999999766 346678899999999988743
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=3.7e-21 Score=216.55 Aligned_cols=280 Identities=16% Similarity=0.148 Sum_probs=247.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|....+.++|..|++.|.+++..++.....+.+.|+++.|+.+|.+ .+..+++.|+++|.|++..+..
T Consensus 120 ~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s----~~~~i~~~a~~~L~nia~~~~~ 195 (503)
T d1wa5b_ 120 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT----GSVEVKEQAIWALGNVAGDSTD 195 (503)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH----CCHHHHHHHHHHHHHHHTTCHH
T ss_pred ChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcC----CChhHHHHHHHHHHHHhhhhHH
Confidence 456777777765578899999999999999888888889999999999999998 7899999999999999876678
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCcccc-ccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPI-IGSSHAVPFLVELCKGKTEHQCKLDALHALYNLS 583 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~-I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs 583 (775)
++..+++.|+++.|+.++.+... ...++++|.+++........ ....+++|.|+.++.+. +.+.+.+++++|.+|+
T Consensus 196 ~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~-d~~~~~~~~~~l~~l~ 274 (503)
T d1wa5b_ 196 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLS 274 (503)
T ss_dssp HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhhc
Confidence 89999999999999999998775 46799999999877654443 33478999999999998 9999999999999999
Q ss_pred CCCC-ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004073 584 TIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 584 ~~~~-nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
.... ....+++.|+++.|+.++.+++..++..++.+|.|++.+.+.....+...|+++.|..++.+.++.++..++++|
T Consensus 275 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l 354 (503)
T d1wa5b_ 275 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 354 (503)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred cCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHH
Confidence 7665 456788999999999999999999999999999999987766555544469999999999999999999999999
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 663 FLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
.+++.+++.....+.+.|+++.++.++.+++..++..|.++|.++....
T Consensus 355 ~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~ 403 (503)
T d1wa5b_ 355 SNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 403 (503)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcc
Confidence 9999998888999999999999999999999999999999999887643
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=4.9e-21 Score=209.73 Aligned_cols=279 Identities=16% Similarity=0.206 Sum_probs=241.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..|+..|.+.++.++|..|++.|.+++..+++.+..+.+.|+++.|+.+|.+ .+..+++.|+++|.|++.+++.
T Consensus 57 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~----~~~~~~~~a~~~L~nl~~~~~~ 132 (434)
T d1q1sc_ 57 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS----PHAHISEQAVWALGNIAGDGSA 132 (434)
T ss_dssp CHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhcccc----CCHHHHHHHHHHHHHHhccchH
Confidence 466778888655468899999999999999988999999999999999999988 7899999999999999876667
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh-------HHHHHHHHhcccccCCccccc-cccCchHHHHHhhcCCCCHHHHHHHHHH
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS-------HGAATALYLNLSFLDDAKPII-GSSHAVPFLVELCKGKTEHQCKLDALHA 578 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~-------~~~AaaaL~~Ls~~~~~k~~I-~~~g~i~~LV~LL~~~~~~~~k~~Al~a 578 (775)
.+..+.+.|+++.|+.+|..... ...+++++.+++........+ ...++++.|+.++.++ +++++..|+++
T Consensus 133 ~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~~~~~a~~~ 211 (434)
T d1q1sc_ 133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWA 211 (434)
T ss_dssp HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhcc-ccchhhhHHhh
Confidence 78888899999999999987653 144677777877765444333 3468899999999998 99999999999
Q ss_pred HHHhcCCCC-ChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcc-cHHHHhhCCCcHHHHHHHhcCCCHHHHH
Q 004073 579 LYNLSTIPS-NIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAA-GKEEMNSTPGLVSGLATVLDTGELIEQE 656 (775)
Q Consensus 579 L~nLs~~~~-nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e-~~~~i~~~~g~I~~Lv~lL~~~s~~~~e 656 (775)
|.+|+..+. ....+...|+++.|++++.+++..++..++.+|.+++...+ .+..+.. .|+++.|+.++.+.++.+++
T Consensus 212 l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~v~~ 290 (434)
T d1q1sc_ 212 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQK 290 (434)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGHHHHTTCSSHHHHH
T ss_pred hcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHh-ccccchHHHhhcccchhhhH
Confidence 999997765 45556679999999999999999999999999999998654 4556666 59999999999999999999
Q ss_pred HHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 657 QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 657 ~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
.|+.+|.+|+..+......+.+.|+++.++.++.+++..++..|.++|.++....
T Consensus 291 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~ 345 (434)
T d1q1sc_ 291 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 345 (434)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcC
Confidence 9999999999988888999999999999999999999999999999999887654
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=4.3e-21 Score=210.21 Aligned_cols=281 Identities=19% Similarity=0.174 Sum_probs=241.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEE-ARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~-nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
..+..++..|.++ +.+.|..|+..|+.++..+.. ....+.+.|++|.|+++|.+. +++.+|..|+++|.+++..+
T Consensus 13 ~~i~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~v~~~a~~~L~~la~~~ 88 (434)
T d1q1sc_ 13 WSVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGT 88 (434)
T ss_dssp CCHHHHHHHHTSS-CHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCG---GGHHHHHHHHHHHHHHHTSC
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCC
Confidence 4588999999999 999999999999988754333 245688899999999999752 56889999999999998766
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccC-CccccccccCchHHHHHhhcCCC----CHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKT----EHQCKLDALH 577 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~~~~----~~~~k~~Al~ 577 (775)
++.+..+++.|++|.|+.+|.+++. ++.|+++|.+++... +++..+...|+++.|+.++.... .......+++
T Consensus 89 ~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 168 (434)
T d1q1sc_ 89 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 168 (434)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred hhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHH
Confidence 7788889999999999999998875 578999999998754 56778888999999999998651 2456778889
Q ss_pred HHHHhcCCCCC-hHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHH
Q 004073 578 ALYNLSTIPSN-IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQE 656 (775)
Q Consensus 578 aL~nLs~~~~n-k~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e 656 (775)
++.+++.+... .......++++.|+.++.+.+..++..++++|.+|+........+....|+++.|++++.++++.++.
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~ 248 (434)
T d1q1sc_ 169 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 248 (434)
T ss_dssp HHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred HHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhh
Confidence 99999977654 33445678999999999999999999999999999988766666555569999999999999999999
Q ss_pred HHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 657 QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 657 ~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
.|+.+|.+++.+++.....+.+.|+++.|+.++.+.++.+++.|..+|..+...
T Consensus 249 ~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 302 (434)
T d1q1sc_ 249 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 302 (434)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTS
T ss_pred chhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccc
Confidence 999999999998888889999999999999999999999999999999988754
|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.87 E-value=4.3e-23 Score=174.19 Aligned_cols=77 Identities=62% Similarity=1.124 Sum_probs=73.3
Q ss_pred CCCCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004073 276 MPLPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGVS 352 (775)
Q Consensus 276 ~~~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~i~ 352 (775)
.+++|++|.||||+++|+|||+++|||||||.||++|+..+..+||.|+.++...+++||+.|+++|++|+++||+.
T Consensus 2 ~peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~e 78 (78)
T d1t1ha_ 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred CCCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCcC
Confidence 45789999999999999999999999999999999999988889999999999999999999999999999999973
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=5.3e-21 Score=206.60 Aligned_cols=279 Identities=16% Similarity=0.116 Sum_probs=228.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.++.||..|.++ ++++|..|+..|.+++.+++++|..+.+.|+||.|+++|++ +++.+|+.|+++|.||+..++.
T Consensus 3 ~ip~lv~~L~~~-~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~a~~aL~~L~~~~~~ 77 (457)
T d1xm9a1 3 TIPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS----PNQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp CHHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHH
T ss_pred CHHHHHHHhCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCCHH
Confidence 367899999999 99999999999999999999999999999999999999988 8999999999999999877788
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCC--------------------------------------
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDD-------------------------------------- 545 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~-------------------------------------- 545 (775)
++..+.+.|+++.|+.++.+..+ +..|+++|.+++..+.
T Consensus 78 ~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (457)
T d1xm9a1 78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP 157 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred HHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccH
Confidence 99999999999999999976443 3556666666654321
Q ss_pred ------------------ccccc-cccCchHHHHHhhc------------------------------------------
Q 004073 546 ------------------AKPII-GSSHAVPFLVELCK------------------------------------------ 564 (775)
Q Consensus 546 ------------------~k~~I-~~~g~i~~LV~LL~------------------------------------------ 564 (775)
++..+ ...|+++.|+.++.
T Consensus 158 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 237 (457)
T d1xm9a1 158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhh
Confidence 11111 12455666655442
Q ss_pred --------------------------------------------------------CCCCHHHHHHHHHHHHHhcCCCCC
Q 004073 565 --------------------------------------------------------GKTEHQCKLDALHALYNLSTIPSN 588 (775)
Q Consensus 565 --------------------------------------------------------~~~~~~~k~~Al~aL~nLs~~~~n 588 (775)
...++..+..+.+++.+++.....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~ 317 (457)
T d1xm9a1 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred hhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhcccc
Confidence 111455677888889998866542
Q ss_pred ------hHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcC------CCHHHHH
Q 004073 589 ------IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDT------GELIEQE 656 (775)
Q Consensus 589 ------k~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~------~s~~~~e 656 (775)
+..+.+.|+++.|+.++.+.+..++..++.+|.||+.+++++..+.. ++++.|+.+|.. .++.+++
T Consensus 318 ~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~--~~i~~li~~L~~~~~~~~~~~~v~~ 395 (457)
T d1xm9a1 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred chHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH--hhHHHHHHHHhccccCcCCcHHHHH
Confidence 34455689999999999999999999999999999999999888875 579999999863 3467999
Q ss_pred HHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc-CChHHHHHHHHHHHHhHhccC
Q 004073 657 QAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLMLFREQRQ 712 (775)
Q Consensus 657 ~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~-g~~~~k~kA~~LL~~L~~~~~ 712 (775)
.|+.+|.+|+..++++++.+.+.|+++.|+.++.+ +++.+++.|..+|.+|..+++
T Consensus 396 ~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~ 452 (457)
T d1xm9a1 396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence 99999999999888999999999999999999876 578899999999999965543
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=1.4e-20 Score=211.74 Aligned_cols=279 Identities=16% Similarity=0.148 Sum_probs=243.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKD-DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~-~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+.+..++..+.++ +.+.|..|+..++.+... .......+.+.|+||.|+.+|... .+..+|..|+++|.|++..+
T Consensus 76 ~~l~~~~~~~~s~-~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~---~~~~iq~~a~~~L~ni~~~~ 151 (503)
T d1wa5b_ 76 QELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN---QPEMLQLEAAWALTNIASGT 151 (503)
T ss_dssp CCHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCC
Confidence 4577888888888 999999999999988753 333456788899999999999863 57889999999999998766
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhccccc-CCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYN 581 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~n 581 (775)
+.....+...|+++.|+.+|.+++. ++.|+++|.||+.. .+++..+...|++++|+.++.+. +..++..++++|.|
T Consensus 152 ~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~n 230 (503)
T d1wa5b_ 152 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSN 230 (503)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccC-CHHHHHHHHHHHHH
Confidence 6677788899999999999998875 57899999999875 56788888899999999999998 89999999999999
Q ss_pred hcCCCCC-hHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCccc-HHHHhhCCCcHHHHHHHhcCCCHHHHHHHH
Q 004073 582 LSTIPSN-IPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAG-KEEMNSTPGLVSGLATVLDTGELIEQEQAV 659 (775)
Q Consensus 582 Ls~~~~n-k~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~-~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av 659 (775)
|+.+..+ .......|+++.|+.++.+.+..+...++++|.+|+..... ...+.. .|+++.|+.++.++++.++..|+
T Consensus 231 l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~v~~~al 309 (503)
T d1wa5b_ 231 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPAL 309 (503)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhh-hhhhhhhhhcccCCchhhhhhHH
Confidence 9976654 34445689999999999999999999999999999986554 455565 59999999999999999999999
Q ss_pred HHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 660 SCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 660 ~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
.+|.+++.++......+.+.|+++.|..++.+.++.++..|.++|.++...
T Consensus 310 ~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~ 360 (503)
T d1wa5b_ 310 RAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 360 (503)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc
Confidence 999999998888888999999999999999999999999999999988643
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=3e-21 Score=218.48 Aligned_cols=274 Identities=16% Similarity=0.111 Sum_probs=235.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCC
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNN 505 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~ 505 (775)
..++.|+..|.+. +..+|..|+..|..+++.+...+..+...|+|+.|+++|... .+..+++.|+.+|.+++. ++
T Consensus 17 ~aip~L~~lL~~~-~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~---~~~~~~~~a~~~L~~l~~-~~ 91 (529)
T d1jdha_ 17 RAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSH-HR 91 (529)
T ss_dssp CHHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTT-SH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCC---CCHHHHHHHHHHHHHHhC-Cc
Confidence 4578888889887 999999999999999976544444444468999999999763 578999999999999974 78
Q ss_pred chhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCC-ccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 506 RNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD-AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 506 ~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~-~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
+++..+++.|++|.|+.+|++++. +..|+++|.+|+.+.+ .+..+...|+|++|+++|+++ ++.++..++++|.+|
T Consensus 92 ~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l 170 (529)
T d1jdha_ 92 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHcc-ChHHHHHHHHHHHHH
Confidence 899999999999999999998876 5789999999987655 566777899999999999998 999999999999999
Q ss_pred cCCC-CChHHHHHcCcHHHHHHhccC-CChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHH
Q 004073 583 STIP-SNIPNLLSAGIISGLQSLAVP-GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVS 660 (775)
Q Consensus 583 s~~~-~nk~~iv~aG~V~~Lv~LL~~-~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~ 660 (775)
+... .++..+++.|+++.|+.++.. ....++..++++|.+|+.+++.+..+.+. |+++.|+.++.++++..+.+|++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~-g~~~~L~~ll~~~~~~~~~~a~~ 249 (529)
T d1jdha_ 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA-GGMQALGLHLTDPSQRLVQNCLW 249 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHT-THHHHHHTTTTSSCHHHHHHHHH
T ss_pred hhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhh-hhhhhHHHHhcccchhhhhhhhh
Confidence 9654 567778889999999998854 45678899999999999999999999885 99999999999999999999999
Q ss_pred HHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 661 CLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 661 ~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
+|.+++..... .....|+++.|+.++.+++..++..|..+|.++..
T Consensus 250 ~l~~ls~~~~~---~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~ 295 (529)
T d1jdha_ 250 TLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHHHHHTTCTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHhccccccc---hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhcc
Confidence 99999865421 12234789999999999999999999999998864
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=4.4e-22 Score=168.75 Aligned_cols=74 Identities=35% Similarity=0.438 Sum_probs=71.1
Q ss_pred CCCCccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 004073 278 LPPEELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNGV 351 (775)
Q Consensus 278 ~~p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~i 351 (775)
++|++|.||||+++|+|||+++|||||||.||++|+..++.+||.|+++++..++.||..|+++|++|+.+||.
T Consensus 3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~ 76 (80)
T d2c2la2 3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 76 (80)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSC
T ss_pred CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCC
Confidence 58999999999999999999999999999999999998888999999999999999999999999999999984
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=3.6e-20 Score=162.62 Aligned_cols=75 Identities=28% Similarity=0.343 Sum_probs=69.0
Q ss_pred CCCCCCCccccccccccccCceecCCC-CccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 004073 275 QMPLPPEELRCPISLQLMYDPVIIASG-QTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEMNG 350 (775)
Q Consensus 275 ~~~~~p~~f~CPIs~~~m~dPV~~~~G-~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~~~ 350 (775)
....+|++|.||||+++|+|||+++|| |||||.||++|+.. +.+||.|++++....|+||..|++.|+.|+.++.
T Consensus 15 ~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~ 90 (98)
T d1wgma_ 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred hhcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCcccccccccchhhcchHHHHHHHHHHHHHHH
Confidence 345789999999999999999999876 69999999999976 6689999999999999999999999999999986
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.8e-16 Score=167.16 Aligned_cols=239 Identities=18% Similarity=0.198 Sum_probs=191.8
Q ss_pred CchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccc-cCC
Q 004073 469 GFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSF-LDD 545 (775)
Q Consensus 469 G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~-~~~ 545 (775)
+.||.||++|++ +++.+|..|+.+|.||+..++++|..+.+.|+||.|+++|++++. +..|+++|.+|+. +++
T Consensus 2 ~~ip~lv~~L~~----~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~ 77 (457)
T d1xm9a1 2 LTIPKAVQYLSS----QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp CCHHHHHHHHHS----SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH
T ss_pred CCHHHHHHHhCC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 579999999998 899999999999999998888999999999999999999998876 5789999999985 567
Q ss_pred ccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhc---------------cCCCh
Q 004073 546 AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLA---------------VPGDP 610 (775)
Q Consensus 546 ~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL---------------~~~~~ 610 (775)
++..+.+.|+++.|+.++.+..+..++..|+++|.+|+....++......|+.+.+..++ ...+.
T Consensus 78 ~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (457)
T d1xm9a1 78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP 157 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred HHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccH
Confidence 888999999999999999765588999999999999999988888888765544443333 12356
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHh-------------------------------------------
Q 004073 611 MWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL------------------------------------------- 647 (775)
Q Consensus 611 ~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL------------------------------------------- 647 (775)
.++..++.+|.+++.+.+++..+....|+++.|+.++
T Consensus 158 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 237 (457)
T d1xm9a1 158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhh
Confidence 7788899999998887777666655445555555433
Q ss_pred -------------------------------------------------------c-CCCHHHHHHHHHHHHHhhcCCh-
Q 004073 648 -------------------------------------------------------D-TGELIEQEQAVSCLFLLCNGNE- 670 (775)
Q Consensus 648 -------------------------------------------------------~-~~s~~~~e~Av~~L~~Lc~~~~- 670 (775)
. ..++..++.++.++..++....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~ 317 (457)
T d1xm9a1 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred hhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhcccc
Confidence 2 2345666777778888775432
Q ss_pred ----HhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 671 ----KCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 671 ----~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
.....+.++|+++.|+.++.+.++.++..|..+|.+|....
T Consensus 318 ~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~ 362 (457)
T d1xm9a1 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred chHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh
Confidence 12344556799999999999999999999999999997543
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1e-16 Score=165.52 Aligned_cols=189 Identities=16% Similarity=0.111 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHH-HhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHH
Q 004073 440 NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLR-FLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIP 518 (775)
Q Consensus 440 ~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~-lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~ 518 (775)
+.+.+..|+..|..|+. +.+++..+...|++++|+. +|.+ .+..++..|+++|.+++.+++..+..+++.|++|
T Consensus 30 ~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s----~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~ 104 (264)
T d1xqra1 30 DQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEA----GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALR 104 (264)
T ss_dssp HHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTC----SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 67889999999999995 5778888999999999986 6666 7899999999999999976777888899999999
Q ss_pred HHHHHhccCC-h--HHHHHHHHhcccccC-CccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC-CCCChHHHH
Q 004073 519 LLEKMISNSN-S--HGAATALYLNLSFLD-DAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST-IPSNIPNLL 593 (775)
Q Consensus 519 ~Lv~lL~s~~-~--~~~AaaaL~~Ls~~~-~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~-~~~nk~~iv 593 (775)
.|+.+|.+.. . +..|+++|.+++.+. .++..+...|+++.|+++|.++ +..++..++++|.||+. +++++..++
T Consensus 105 ~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~ 183 (264)
T d1xqra1 105 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLC 183 (264)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC-chHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999997654 3 477999999988654 5677778899999999999998 99999999999999985 567999999
Q ss_pred HcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCc-ccHHHHh
Q 004073 594 SAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASA-AGKEEMN 634 (775)
Q Consensus 594 ~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~-e~~~~i~ 634 (775)
++|+++.|+.+|.+++..+++.|+++|.+|+... +....+.
T Consensus 184 ~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~ 225 (264)
T d1xqra1 184 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR 225 (264)
T ss_dssp HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999999999999854 3444443
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=5.6e-16 Score=159.86 Aligned_cols=194 Identities=18% Similarity=0.089 Sum_probs=167.4
Q ss_pred CCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHH-HhccCCh--HHHHHHHHhccccc-CCccccccccCchHHHH
Q 004073 485 RNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEK-MISNSNS--HGAATALYLNLSFL-DDAKPIIGSSHAVPFLV 560 (775)
Q Consensus 485 ~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~-lL~s~~~--~~~AaaaL~~Ls~~-~~~k~~I~~~g~i~~LV 560 (775)
.+...+..|+.+|.+|+ .+.+|+..+...|++++|+. +|++++. +..|+.+|.+++.+ +.++..+...|++|.|+
T Consensus 29 ~~~~~~~~Al~~L~~L~-~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv 107 (264)
T d1xqra1 29 ADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 107 (264)
T ss_dssp HHHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 46678899999999997 46778888999999999886 6777765 57799999999975 45677888899999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhcCCC-CChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhC-CcccHHHHhhCCC
Q 004073 561 ELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPG 638 (775)
Q Consensus 561 ~LL~~~~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~-~~e~~~~i~~~~g 638 (775)
.+|.+..++.++..|+++|.+|+.+. .++..++..|+++.|+.++.+++..++..++++|.+|+. +++.+..+... |
T Consensus 108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~ 186 (264)
T d1xqra1 108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM-G 186 (264)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT-T
T ss_pred HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHh-h
Confidence 99976548999999999999999765 467788899999999999999999999999999999986 56677777774 9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCC
Q 004073 639 LVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEG 680 (775)
Q Consensus 639 ~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G 680 (775)
+++.|+.+|.++++.+++.|+.+|.+|+..++.....+...+
T Consensus 187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~ 228 (264)
T d1xqra1 187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 228 (264)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGG
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 999999999999999999999999999998877777776544
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=6.5e-15 Score=115.05 Aligned_cols=52 Identities=23% Similarity=0.354 Sum_probs=47.5
Q ss_pred cccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 004073 283 LRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPN 335 (775)
Q Consensus 283 f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn 335 (775)
+.||||+++|+|||++ .|||+|||.||.+|+.. +.+||.||++++..+|+|.
T Consensus 1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLipi 53 (56)
T d2baya1 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEI 53 (56)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEEC
T ss_pred CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhceeC
Confidence 5799999999999988 59999999999999986 5689999999999888874
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=4.3e-14 Score=124.82 Aligned_cols=68 Identities=25% Similarity=0.526 Sum_probs=60.5
Q ss_pred CCccccccccccccCceecCCCCccchHHHHHHHhc--CCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 004073 280 PEELRCPISLQLMYDPVIIASGQTYERICIEKWLSD--GHSTCPKTQQKLPHLCLTPNYCVKGLIASWCE 347 (775)
Q Consensus 280 p~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~--~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~ 347 (775)
-+.|.||||+++|.|||+++|||+||+.||.+|+.. +...||.|++++....+.||+.+.++|+++..
T Consensus 19 ~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~ 88 (103)
T d1jm7a_ 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (103)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred ccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 357899999999999999999999999999999964 34689999999999999999988888887743
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=5.7e-14 Score=118.98 Aligned_cols=62 Identities=24% Similarity=0.397 Sum_probs=53.8
Q ss_pred CccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCc-ccHHHHHHH
Q 004073 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLT-PNYCVKGLI 342 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~-pn~~l~~~i 342 (775)
++|.||||+++|.|||+++|||+||+.||++|+..++.+||.|++++...++. |..++.+.+
T Consensus 22 ~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l 84 (86)
T d1rmda2 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL 84 (86)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred cCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence 44699999999999999999999999999999987778999999999877765 666666554
|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: bard1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.7e-13 Score=119.60 Aligned_cols=67 Identities=16% Similarity=0.306 Sum_probs=60.3
Q ss_pred CCCccccccccccccCceec-CCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 004073 279 PPEELRCPISLQLMYDPVII-ASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTPNYCVKGLIASWCEM 348 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dPV~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~pn~~l~~~i~~~~~~ 348 (775)
+.++|.||||+++|.|||++ +|||+||+.||.+|+.. .||.|+.++....+.||..|+.+|+.+...
T Consensus 19 l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~ 86 (97)
T d1jm7b_ 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLKINRQLDSMIQLCSKL 86 (97)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred hhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc---cccccCCcCchhhCcccHHHHHHHHHHHHH
Confidence 46789999999999999986 79999999999999853 599999999999999999999999887543
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=1.8e-11 Score=102.19 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=45.7
Q ss_pred ccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCC
Q 004073 282 ELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLC 331 (775)
Q Consensus 282 ~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~ 331 (775)
...||||++.+.|||+++|||+||+.||.+|+..++.+||.||+.+....
T Consensus 23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~ 72 (79)
T d1fbva4 23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 72 (79)
T ss_dssp TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence 35799999999999999999999999999999887889999999997654
|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Acute promyelocytic leukaemia proto-oncoprotein PML species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=7.2e-11 Score=91.38 Aligned_cols=50 Identities=26% Similarity=0.307 Sum_probs=43.6
Q ss_pred CccccccccccccCceecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 004073 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCLTP 334 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l~p 334 (775)
+.+.||||++.|.|||+++|||+||+.||++| +.+||.|+++++...-.|
T Consensus 5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~ 54 (56)
T d1bora_ 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTP 54 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCC
T ss_pred CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCCC
Confidence 35799999999999999999999999999876 568999999987665554
|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: TFIIH Mat1 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=5.3e-10 Score=89.39 Aligned_cols=52 Identities=19% Similarity=0.458 Sum_probs=43.6
Q ss_pred CccccccccccccCc-----eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDP-----VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPHLCL 332 (775)
Q Consensus 281 ~~f~CPIs~~~m~dP-----V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~~~l 332 (775)
++..||||++.+..+ ++.+|||+|++.||.+|+..++..||.||+++....+
T Consensus 2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~ 58 (65)
T d1g25a_ 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence 578999999876433 5669999999999999998878889999999866544
|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Immediate early protein, IEEHV species: Equine herpesvirus 1 [TaxId: 10326]
Probab=98.71 E-value=2.8e-09 Score=85.86 Aligned_cols=44 Identities=25% Similarity=0.659 Sum_probs=39.5
Q ss_pred ccccccccccCcee-cCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 284 RCPISLQLMYDPVI-IASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 284 ~CPIs~~~m~dPV~-~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
.||||++.|.+|++ ++|||+|+..||.+|+.. +.+||.||+++.
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~ 51 (68)
T d1chca_ 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE 51 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchH
Confidence 39999999999866 699999999999999986 678999998874
|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Not-4 N-terminal RING finger domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=1.4e-08 Score=77.05 Aligned_cols=46 Identities=20% Similarity=0.489 Sum_probs=39.3
Q ss_pred ccccccccccCc----eecCCCCccchHHHHHHHhcCCCCCCCCCCCCCC
Q 004073 284 RCPISLQLMYDP----VIIASGQTYERICIEKWLSDGHSTCPKTQQKLPH 329 (775)
Q Consensus 284 ~CPIs~~~m~dP----V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~~ 329 (775)
-||||++-|.+. ++.+|||+|++.||.+|+..++.+||.||+++..
T Consensus 2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~ 51 (52)
T d1ur6b_ 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51 (52)
T ss_dssp EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence 599999998543 3458999999999999998777789999999864
|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: EL5 RING-H2 domain species: Rice (Oryza sativa) [TaxId: 4530]
Probab=98.44 E-value=5.4e-08 Score=74.64 Aligned_cols=47 Identities=26% Similarity=0.687 Sum_probs=39.6
Q ss_pred CCccccccccccccCc---eec-CCCCccchHHHHHHHhcCCCCCCCCCCCC
Q 004073 280 PEELRCPISLQLMYDP---VII-ASGQTYERICIEKWLSDGHSTCPKTQQKL 327 (775)
Q Consensus 280 p~~f~CPIs~~~m~dP---V~~-~~G~ty~r~~I~~w~~~~~~~CP~t~~~l 327 (775)
-++..||||++-|.+. +.+ .|||+|...||.+|+.. +.+||.||+++
T Consensus 3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i 53 (55)
T d1iyma_ 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence 3567899999999763 344 69999999999999986 77999999875
|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Deltex protein 2 RING-H2 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.23 E-value=3.7e-07 Score=80.87 Aligned_cols=51 Identities=14% Similarity=0.352 Sum_probs=41.4
Q ss_pred CCCccccccccccccCc------------------eecCCCCccchHHHHHHHhc----CCCCCCCCCCCCCC
Q 004073 279 PPEELRCPISLQLMYDP------------------VIIASGQTYERICIEKWLSD----GHSTCPKTQQKLPH 329 (775)
Q Consensus 279 ~p~~f~CPIs~~~m~dP------------------V~~~~G~ty~r~~I~~w~~~----~~~~CP~t~~~l~~ 329 (775)
.+.+..||||++-|.+| ++++|||.|+..||.+|+.. ++.+||.||..+..
T Consensus 22 ~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T d1v87a_ 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred ccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence 34566899999999765 35689999999999999974 45689999987743
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=2.8e-05 Score=86.57 Aligned_cols=260 Identities=12% Similarity=0.112 Sum_probs=174.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc--ChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKD--DEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~--~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
.+.+++..+... +.+++..+++.|..+... +++.. ...++.|..++.. ++..+++.|+.+|..+....
T Consensus 49 ~lip~l~~~~~~-~~ev~~~~~~~l~~~~~~~~~~~~~-----~~ll~~l~~l~~~----~~~~Vr~~a~~~l~~i~~~~ 118 (588)
T d1b3ua_ 49 ELLPFLTDTIYD-EDEVLLALAEQLGTFTTLVGGPEYV-----HCLLPPLESLATV----EETVVRDKAVESLRAISHEH 118 (588)
T ss_dssp THHHHHHHTCCC-CHHHHHHHHHHHTTCSGGGTSGGGG-----GGGHHHHHHHTTS----SCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCChhHH-----HHHHHHHHHHccC----CCHHHHHHHHHHHHHHHHhC
Confidence 345555555444 567777777777665532 12211 2345666667665 78899999999999996422
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNL 582 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nL 582 (775)
+ .. -+..-.+|.+..+..+... +..|+.++..+...-.. .+ ....++.+..++.+. ++.+++.|+.+|..+
T Consensus 119 ~--~~-~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~--~~-~~~l~~~~~~l~~D~-~~~VR~~a~~~l~~~ 191 (588)
T d1b3ua_ 119 S--PS-DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--AV-KAELRQYFRNLCSDD-TPMVRRAAASKLGEF 191 (588)
T ss_dssp C--HH-HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--HH-HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHH
T ss_pred C--HH-HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhH--HH-HHHHHHHHHHHhccC-CHHHHHHHHHHHHHH
Confidence 2 22 2345567766677666543 23344334333322111 11 133578888899988 999999999999999
Q ss_pred cCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004073 583 STIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 583 s~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
+..-.. .......++.|..++.+.+..++..|+.+|..++..-.. ..... ..++.+..++.+.+..++..++.+|
T Consensus 192 ~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~-~~~~~--~i~~~l~~~~~D~~~~Vr~~~~~~l 266 (588)
T d1b3ua_ 192 AKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-EDLEA--LVMPTLRQAAEDKSWRVRYMVADKF 266 (588)
T ss_dssp HHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH-HHHHH--HTHHHHHHHHTCSSHHHHHHHHHTH
T ss_pred HHHhcH--HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH-HHHHH--HHHHHHHHhcccccHHHHHHHHHhH
Confidence 865432 234456778888899999999999999999988753221 11111 3578888888889999999999999
Q ss_pred HHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 663 FLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 663 ~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
..++..-. .......+++.+..++.+..+.+|..|...|..+...-
T Consensus 267 ~~l~~~~~---~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l 312 (588)
T d1b3ua_ 267 TELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp HHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhh---hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 99885311 11233457888999999999999999998887766543
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=2.3e-05 Score=87.29 Aligned_cols=264 Identities=15% Similarity=0.134 Sum_probs=178.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..++..|....++.+|..|+..+..+++.-.. .......++.|..++.+ .+..++..|+.+|..++...+.
T Consensus 164 ~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d----~~~~vr~~a~~~l~~i~~~~~~ 236 (588)
T d1b3ua_ 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASD----EQDSVRLLAVEACVNIAQLLPQ 236 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTC----SCHHHHTTHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcC----CchhhHHHHHHHHHHhhccCCH
Confidence 3444444444444899999999999999875321 12223556777777766 7889999999999888642221
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
.......+|.+..++...+. +..++.+|..+...-. ..+.....++.+..++.+. +.+++..|+.+|..++.
T Consensus 237 ---~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d~-~~~vr~~a~~~l~~~~~ 310 (588)
T d1b3ua_ 237 ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCE 310 (588)
T ss_dssp ---HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence 12233478888888876664 4556666666553211 1122346789999999998 99999999999999874
Q ss_pred C--CCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004073 585 I--PSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 585 ~--~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
. ........-..+++.+..++.+.+..++..++.++..++..- +...... ..++.+..++...++.++..++..+
T Consensus 311 ~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~-~~~~~~~--~l~p~l~~~l~d~~~~v~~~~~~~l 387 (588)
T d1b3ua_ 311 NLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL-GKDNTIE--HLLPLFLAQLKDECPEVRLNIISNL 387 (588)
T ss_dssp TSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH-CHHHHHH--HTHHHHHHHHTCSCHHHHHHHHTTC
T ss_pred HHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhcc-chhHHHH--HHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 3 334444444568888888888888888888777777665321 2222332 4678888888888888888888877
Q ss_pred HHhhcC-ChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 663 FLLCNG-NEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 663 ~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
..++.. +... .....++.+..++.+.+.++|..+...+..+...
T Consensus 388 ~~~~~~~~~~~----~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~ 432 (588)
T d1b3ua_ 388 DCVNEVIGIRQ----LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 432 (588)
T ss_dssp HHHHHHSCHHH----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhh----hhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 766642 1111 1123567777777888888888888877777654
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.09 E-value=0.0001 Score=72.93 Aligned_cols=228 Identities=14% Similarity=0.093 Sum_probs=134.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
...|+..|.+. ++.+|..|+..|..+.. ..+++.|+++|.+ .++.++..|+.+|..+.. ....
T Consensus 21 ~~~L~~~L~d~-~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d----~~~~vr~~a~~aL~~l~~-~~~~ 83 (276)
T d1oyza_ 21 DDELFRLLDDH-NSLKRISSARVLQLRGG-----------QDAVRLAIEFCSD----KNYIRRDIGAFILGQIKI-CKKC 83 (276)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTC----SSHHHHHHHHHHHHHSCC-CTTT
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcC----CCHHHHHHHHHHHHHhcc-cccc
Confidence 34677778877 99999999999876632 3568999999987 799999999999999853 2222
Q ss_pred hHHHHhhCcHHHHHHH-hccCCh--HHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004073 508 KELMLAAGVIPLLEKM-ISNSNS--HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 508 k~~i~~~G~i~~Lv~l-L~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
... .++.+... ++..+. +..|+.+|..+..... +.....++.+...+.+. ++.++..|+.++....
T Consensus 84 ~~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~-~~~vr~~a~~~l~~~~- 152 (276)
T d1oyza_ 84 EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDK-STNVRRATAFAISVIN- 152 (276)
T ss_dssp HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS-CHHHHHHHHHHHHTC--
T ss_pred ccc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCc-chHHHHHHHHHHhhcc-
Confidence 221 23344443 444443 3556666655543221 11134566677777666 7777777776665542
Q ss_pred CCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccH----------------HH------HhhCCCcHHH
Q 004073 585 IPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGK----------------EE------MNSTPGLVSG 642 (775)
Q Consensus 585 ~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~----------------~~------i~~~~g~I~~ 642 (775)
....++.++.++...+......+..++.++....... .. .......++.
T Consensus 153 ---------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 223 (276)
T d1oyza_ 153 ---------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSV 223 (276)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred ---------hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHH
Confidence 1234444444444444433333333333332211100 00 0012356777
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhc-CChHHHHHHHHHHH
Q 004073 643 LATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVN-GSTRGRDKAQRLLM 705 (775)
Q Consensus 643 Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~-g~~~~k~kA~~LL~ 705 (775)
|++.+.+ +.++..|+.+|..+.. .++++.|..++.+ .+..++..|...|+
T Consensus 224 L~~~l~d--~~vr~~a~~aL~~ig~-----------~~~~~~L~~~l~~~~d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 224 LCDELKK--NTVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 274 (276)
T ss_dssp HHHHHTS--SSCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHhCC--hHHHHHHHHHHHHcCC-----------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence 7777764 3466777777776642 3478888877766 46788888887663
|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: Variant RING domain domain: IE1B protein (ORF K3), N-terminal domain species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]
Probab=98.07 E-value=1.2e-06 Score=68.08 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=42.0
Q ss_pred CccccccccccccCceecCCC-----CccchHHHHHHHh-cCCCCCCCCCCCCC
Q 004073 281 EELRCPISLQLMYDPVIIASG-----QTYERICIEKWLS-DGHSTCPKTQQKLP 328 (775)
Q Consensus 281 ~~f~CPIs~~~m~dPV~~~~G-----~ty~r~~I~~w~~-~~~~~CP~t~~~l~ 328 (775)
+...|+||++-+.++.+.+++ |.|.+.||++|+. .++.+||.|++++.
T Consensus 5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~ 58 (60)
T d1vyxa_ 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence 467899999999999888764 9999999999997 46789999999875
|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=3.2e-06 Score=71.02 Aligned_cols=32 Identities=19% Similarity=0.553 Sum_probs=27.9
Q ss_pred eecCCCCccchHHHHHHHhcCCCCCCCCCCCCC
Q 004073 296 VIIASGQTYERICIEKWLSDGHSTCPKTQQKLP 328 (775)
Q Consensus 296 V~~~~G~ty~r~~I~~w~~~~~~~CP~t~~~l~ 328 (775)
++++|||.|...||.+|+.. +.+||.||+++.
T Consensus 53 ~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~ 84 (88)
T d3dplr1 53 AWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 84 (88)
T ss_dssp EEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred EEccccCcccHHHHHHHHHH-CCcCCCCCCccc
Confidence 34589999999999999986 679999998864
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.00011 Score=88.71 Aligned_cols=273 Identities=12% Similarity=0.133 Sum_probs=171.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..++.++.+. |.+.|..|+..|......+.-.-..=....+++.|+++|.+ .++.+|..|+.+|..+...-.+
T Consensus 4 ~~~~ll~k~~~~-D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D----~~~~Vq~~A~k~l~~l~~~~~~ 78 (1207)
T d1u6gc_ 4 HISNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED----KNGEVQNLAVKCLGPLVSKVKE 78 (1207)
T ss_dssp HHHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC----SSHHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHhcCCC-CHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHhCcH
Confidence 567888999888 99999999999988765432111111123467889999977 7999999999999999643222
Q ss_pred hhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhc----ccccCCccccccc--cCchHHHHHhhcCCCCHHHHHHHHHH
Q 004073 507 NKELMLAAGVIPLLEKMISNSNS--HGAATALYLN----LSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHA 578 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~----Ls~~~~~k~~I~~--~g~i~~LV~LL~~~~~~~~k~~Al~a 578 (775)
. .+ ...++.|...+.++.. +..+..+|.. +............ ...++.|...+....+..++..|+.+
T Consensus 79 ~---~~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~ 154 (1207)
T d1u6gc_ 79 Y---QV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 154 (1207)
T ss_dssp H---HH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred h---hH-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 1 11 3456677766655543 3334333332 2222212111111 23445555555555478899999999
Q ss_pred HHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhc-CCCHHHHHH
Q 004073 579 LYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLD-TGELIEQEQ 657 (775)
Q Consensus 579 L~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~-~~s~~~~e~ 657 (775)
|..+....++-..-....+++.|+..+.+.+..++..|+.+|..|+..-.. ... ...+..++..+. ..+...+..
T Consensus 155 l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~--~~~--~~~~~~ll~~l~~~~~~~~~~~ 230 (1207)
T d1u6gc_ 155 MADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMSTTRT 230 (1207)
T ss_dssp HHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTT
T ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH--HHH--HHHHHHHHHHHccCCCHHHHHH
Confidence 998864332111001123677788888888999999999999999864322 122 246777777665 345556667
Q ss_pred HHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhccCC
Q 004073 658 AVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 658 Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
++.+|..++...+..... .-..+++.++..+...++.+|+.|...|..+....+.
T Consensus 231 ~~~~l~~l~~~~~~~~~~-~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~ 285 (1207)
T d1u6gc_ 231 YIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 285 (1207)
T ss_dssp HHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcchhhHH-HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChh
Confidence 788888887643221100 0134688888999999999999999988887655443
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=0.0019 Score=63.27 Aligned_cols=166 Identities=13% Similarity=0.048 Sum_probs=113.0
Q ss_pred cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCC
Q 004073 468 NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD 545 (775)
Q Consensus 468 ~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~ 545 (775)
....+.|+++|.+ .|+.++..|+.+|..+. + ..+++.|+.+|++.+. +..|+.+|..+.....
T Consensus 18 ~~~~~~L~~~L~d----~~~~vR~~A~~~L~~~~--~---------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~ 82 (276)
T d1oyza_ 18 KLNDDELFRLLDD----HNSLKRISSARVLQLRG--G---------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK 82 (276)
T ss_dssp TSCHHHHHHHTTC----SSHHHHHHHHHHHHHHC--C---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred cCCHHHHHHHhcC----CCHHHHHHHHHHHHhhC--C---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 4556789999998 89999999999998773 1 2468999999998775 4567777776643322
Q ss_pred ccccccccCchHHHHHh-hcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 004073 546 AKPIIGSSHAVPFLVEL-CKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLA 624 (775)
Q Consensus 546 ~k~~I~~~g~i~~LV~L-L~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa 624 (775)
.. ...++.|..+ +++. ++.++..|+.+|.+++...... ...+++.+...+.+.+..++..++.++....
T Consensus 83 ~~-----~~~~~~l~~~~l~d~-~~~vr~~a~~aL~~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~ 152 (276)
T d1oyza_ 83 CE-----DNVFNILNNMALNDK-SACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIN 152 (276)
T ss_dssp TH-----HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred cc-----cchHHHHHHHHhcCC-ChhHHHHHHHHHHHHccccchh----hHHHHHHHHHHhcCcchHHHHHHHHHHhhcc
Confidence 21 1234455554 4555 9999999999999987544322 1235677777888888887777777665432
Q ss_pred CCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 004073 625 ASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN 669 (775)
Q Consensus 625 ~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~ 669 (775)
. ...++.+..++.......+..+..++..+....
T Consensus 153 ~-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 186 (276)
T d1oyza_ 153 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN 186 (276)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC
T ss_pred h-----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccc
Confidence 1 355677777777777777776666666655443
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.0027 Score=73.90 Aligned_cols=274 Identities=14% Similarity=0.056 Sum_probs=154.5
Q ss_pred hHHHHHHH-HHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLN-VLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~-~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+.+.+++. .+.+. +|..|..|+.++..++.+..+.-.... ...++.|+..|.+ .++.++..|+++|..++...
T Consensus 394 ~~~l~~l~~~l~s~-~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d----~~~~Vr~~a~~~l~~~~~~~ 467 (888)
T d1qbkb_ 394 PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSD----KKALVRSITCWTLSRYAHWV 467 (888)
T ss_dssp HHHHHHHHHTTTSS-SHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTS----SCHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhhccc-hhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccC----CCHHHHHHHHHHHHHHHHHh
Confidence 34445544 45555 899999999999998876443221111 2456777777766 78999999999999886311
Q ss_pred CchhHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCC--ccccccccCchHHHHHhhcCCCCHHHHHHHHHHHH
Q 004073 505 NRNKELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALY 580 (775)
Q Consensus 505 ~~nk~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~--~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~ 580 (775)
......-.-..+++.|+..+.+.+. ++.|+.+|.++..... ....+ ...++.|+..+... ....+..+..++.
T Consensus 468 ~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~-~~~~~~~~~~al~ 544 (888)
T d1qbkb_ 468 VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKY-QHKNLLILYDAIG 544 (888)
T ss_dssp HSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTC-CHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhh-hHHHHHHHHHHHH
Confidence 1111111224578888888877765 4678888877764321 11111 34667777777765 5555555555544
Q ss_pred HhcC---CCCChHHHHHcCcHHHHHHhc------------------------c---------------------------
Q 004073 581 NLST---IPSNIPNLLSAGIISGLQSLA------------------------V--------------------------- 606 (775)
Q Consensus 581 nLs~---~~~nk~~iv~aG~V~~Lv~LL------------------------~--------------------------- 606 (775)
.++. ..-++..+++. .++.|++.. .
T Consensus 545 ~l~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 623 (888)
T d1qbkb_ 545 TLADSVGHHLNKPEYIQM-LMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAML 623 (888)
T ss_dssp HHHHHHGGGGCSHHHHHH-HHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchHHHHH-HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4431 11111111110 111111111 0
Q ss_pred ---------CCChHHHHHHHHHHHHHhCC-cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHH
Q 004073 607 ---------PGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMV 676 (775)
Q Consensus 607 ---------~~~~~i~e~al~~L~nLa~~-~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v 676 (775)
..+......++.++..++.. ......++.....++.+...+.+.++.+++.|..++..|+........-.
T Consensus 624 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~ 703 (888)
T d1qbkb_ 624 NNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC 703 (888)
T ss_dssp HHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred HhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 01122233334444444321 11122233333567777788888899999999999988886443322111
Q ss_pred HHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 677 LQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 677 ~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
+. ..++.|+.-+.+....++.+|.+.+--+...
T Consensus 704 l~-~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~ 736 (888)
T d1qbkb_ 704 IA-DFMPILGTNLNPEFISVCNNATWAIGEISIQ 736 (888)
T ss_dssp HH-HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHH
Confidence 11 2456666666677778899998888766544
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.0072 Score=62.88 Aligned_cols=278 Identities=13% Similarity=0.082 Sum_probs=163.3
Q ss_pred hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEG-ENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~-~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+.+..++..+.+. .+...+..++..+..+..........-.-...++.++..+.+. ..+..++..|+.++.++....
T Consensus 127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~--~~~~~v~~~a~~~l~~~~~~~ 204 (458)
T d1ibrb_ 127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEFT 204 (458)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHTTTT
T ss_pred chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhccc--ccCHHHHHHHHHHHHHHHHhh
Confidence 4566677777654 2456676777777777654322221112234567777777652 145788999999998885322
Q ss_pred Cch-hHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCC--ccccccccCchHHHHHhhcCCCCHHHHHHHHHHH
Q 004073 505 NRN-KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDD--AKPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL 579 (775)
Q Consensus 505 ~~n-k~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~--~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL 579 (775)
... ..........+.+..++.+.+. +..++.+|..+..... ....+. ....+.+...+.+. +..++..|+..+
T Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~~~~~~~~~~~~~-~~~~~~~a~~~l 282 (458)
T d1ibrb_ 205 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSD-IDEVALQGIEFW 282 (458)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCS-SHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 211 1112223456666777776664 3456666665543221 111221 22334455666666 888899999888
Q ss_pred HHhcCCC---------------------CChHHHHHcCcHHHHHHhccC-------CChHHHHHHHHHHHHHhCCcccHH
Q 004073 580 YNLSTIP---------------------SNIPNLLSAGIISGLQSLAVP-------GDPMWTEKSLAVLLNLAASAAGKE 631 (775)
Q Consensus 580 ~nLs~~~---------------------~nk~~iv~aG~V~~Lv~LL~~-------~~~~i~e~al~~L~nLa~~~e~~~ 631 (775)
..++... ..-....-...++.+.+.+.+ .+..++..+..++..++.....
T Consensus 283 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-- 360 (458)
T d1ibrb_ 283 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-- 360 (458)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--
Confidence 8775211 111111222344555554432 2234556677777777653221
Q ss_pred HHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-hHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 632 EMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN-EKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 632 ~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~-~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
.+.. ..++.+...+.+.++..|+.|+.+|..++.+. .+.... .-..+++.|+.++.+.++++|..|...|..+.++
T Consensus 361 ~~~~--~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 361 DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 437 (458)
T ss_dssp THHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhh--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 1221 34566667778889999999999999998642 111111 1134788899999999999999999999888766
Q ss_pred cC
Q 004073 711 RQ 712 (775)
Q Consensus 711 ~~ 712 (775)
-.
T Consensus 438 ~~ 439 (458)
T d1ibrb_ 438 LP 439 (458)
T ss_dssp GG
T ss_pred hh
Confidence 43
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.19 E-value=2e-05 Score=68.34 Aligned_cols=105 Identities=16% Similarity=0.089 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHh
Q 004073 568 EHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVL 647 (775)
Q Consensus 568 ~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL 647 (775)
|+.++..|+.+|..+. ..+++.|+.+|.+++..++..|+.+|.++.. .+.++.|+.+|
T Consensus 5 ~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l 62 (111)
T d1te4a_ 5 NKWVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLL 62 (111)
T ss_dssp CCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHHHhhh
Confidence 5556666666665442 2367889999999999999999999976542 24688999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHH
Q 004073 648 DTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLM 705 (775)
Q Consensus 648 ~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~ 705 (775)
.+.++.++..|+.+|..+... ++++.|..++.+.++.+|+.|...|.
T Consensus 63 ~d~~~~VR~~a~~aL~~i~~~-----------~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 63 EDDSGFVRSGAARSLEQIGGE-----------RVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHCCTHHHHHHHHHHHHHCSH-----------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ccchhHHHHHHHHHHHHhCcc-----------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999887431 25788888999999999999998875
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.0031 Score=65.84 Aligned_cols=268 Identities=9% Similarity=0.005 Sum_probs=163.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
+..++..+.++ +.+++.+|-..|..+.+.+. .+++..|..+|.+. ..+..++..|+..|.|.-......
T Consensus 2 l~~il~~~~s~-d~~~r~~A~~~L~~~~~~~~--------~~~~~~l~~il~~~--~~~~~~R~~A~i~lk~~l~~~~~~ 70 (458)
T d1ibrb_ 2 LITILEKTVSP-DRLELEAAQKFLERAAVENL--------PTFLVELSRVLANP--GNSQVARVAAGLQIKNSLTSKDPD 70 (458)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHhCc-CHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhccCch
Confidence 34567777787 89999999999998887532 35677788888652 145678888888887764322211
Q ss_pred -hHHH----------HhhCcHHHHHHHhccCCh-HHHHHHHHhcccccCCccccccccCchHHHHHhhcCC-CCHHHHHH
Q 004073 508 -KELM----------LAAGVIPLLEKMISNSNS-HGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGK-TEHQCKLD 574 (775)
Q Consensus 508 -k~~i----------~~~G~i~~Lv~lL~s~~~-~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~-~~~~~k~~ 574 (775)
+... ........++..+.+.+. ...++.++..++..+.... .-.+.++.|+..+.++ .+...+..
T Consensus 71 ~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~ 148 (458)
T d1ibrb_ 71 IKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKES 148 (458)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHH
T ss_pred hhhHHhhhhccCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHhCCcc--cCcchhHHHHHHHHhhcchHHHHHH
Confidence 1111 122345556666666543 2223333332222211110 0147889999988754 35677888
Q ss_pred HHHHHHHhcCCCC-ChHHHHHcCcHHHHHHhccC--CChHHHHHHHHHHHHHhCCcccHH--HHhhCCCcHHHHHHHhcC
Q 004073 575 ALHALYNLSTIPS-NIPNLLSAGIISGLQSLAVP--GDPMWTEKSLAVLLNLAASAAGKE--EMNSTPGLVSGLATVLDT 649 (775)
Q Consensus 575 Al~aL~nLs~~~~-nk~~iv~aG~V~~Lv~LL~~--~~~~i~e~al~~L~nLa~~~e~~~--~i~~~~g~I~~Lv~lL~~ 649 (775)
++.+|..++.... ....-.-..+++.++..+.+ .+..++..++.++.++........ .... ....+.+..++.+
T Consensus 149 ~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 227 (458)
T d1ibrb_ 149 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEATQC 227 (458)
T ss_dssp HHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH-HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHhHhhHHHHhcC
Confidence 8999888874322 21111223356777776654 456788899999998876433211 1111 1345667777778
Q ss_pred CCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 650 GELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 650 ~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
.+++++..++.+|..++...+......+.....+.+.....+.++.++..|...+..+.+
T Consensus 228 ~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~ 287 (458)
T d1ibrb_ 228 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 287 (458)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 899999999999999986543322212222233444566778888999999988876653
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.13 E-value=0.0036 Score=70.97 Aligned_cols=268 Identities=12% Similarity=0.084 Sum_probs=161.3
Q ss_pred hHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNV-LNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~-L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+.+..++.. +.+. +.++|..|-..|..+.+++. .+++..|...+.+. ..+..++..|+..|.|.-...
T Consensus 4 ~~~~~~L~~~~~s~-d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~--~~~~~~r~~A~i~lkn~i~~~ 72 (861)
T d2bpta1 4 AEFAQLLENSILSP-DQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDE--NTKLEGRILAALTLKNELVSK 72 (861)
T ss_dssp HHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCT--TSCHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhhcc
Confidence 345566654 5677 89999999999988876532 36778888888652 246778888888888774322
Q ss_pred CchhHHH--------H----hhCcHHHHHHHhccCCh--HHHHHHHHhcccccC--CccccccccCchHHHHHhhcCCCC
Q 004073 505 NRNKELM--------L----AAGVIPLLEKMISNSNS--HGAATALYLNLSFLD--DAKPIIGSSHAVPFLVELCKGKTE 568 (775)
Q Consensus 505 ~~nk~~i--------~----~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~--~~k~~I~~~g~i~~LV~LL~~~~~ 568 (775)
....... + ...+...++..|.+.+. +..++.++..++..+ +++. ...++.|+..+.+..+
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w----peli~~L~~~~~s~~~ 148 (861)
T d2bpta1 73 DSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW----PELMKIMVDNTGAEQP 148 (861)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC----HHHHHHHHHHTSTTSC
T ss_pred cchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch----HHHHHHHHHHhcCCCc
Confidence 2111100 0 11233455666666554 334555555554332 1111 3567888888887646
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHcC---cHHHHHHhc--cCCChHHHHHHHHHHHHHhCCcccH---HHHhhCCCcH
Q 004073 569 HQCKLDALHALYNLSTIPSNIPNLLSAG---IISGLQSLA--VPGDPMWTEKSLAVLLNLAASAAGK---EEMNSTPGLV 640 (775)
Q Consensus 569 ~~~k~~Al~aL~nLs~~~~nk~~iv~aG---~V~~Lv~LL--~~~~~~i~e~al~~L~nLa~~~e~~---~~i~~~~g~I 640 (775)
...+..|+.+|..++..-++...-.-.. .+..++..+ .+.+..++..++.+|.++...-... .... ...+
T Consensus 149 ~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~--~~~~ 226 (861)
T d2bpta1 149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGER--NYLM 226 (861)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhh--hHHH
Confidence 7788889999999874433221111122 233333322 2356788889999999887643211 1111 1356
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhc
Q 004073 641 SGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 641 ~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~ 710 (775)
..|...+...++.++..++.+|..++...++.....+..-+...+.....+.++.++..|..++..+.+.
T Consensus 227 ~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~ 296 (861)
T d2bpta1 227 QVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEE 296 (861)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 6777888889999999999999999864333222222221222334555677888998888887766543
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.12 E-value=0.0021 Score=68.98 Aligned_cols=275 Identities=12% Similarity=0.037 Sum_probs=167.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 509 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~ 509 (775)
.++..|... +.-....+...+..++..+..+... .+.++.+..+++.-....+...+..|+.+|-.+.. .++.|.
T Consensus 126 ~f~~~l~~~-d~~~~~~s~~i~~ll~~~~~~~~~~---~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr-~~~~R~ 200 (477)
T d1ho8a_ 126 LFDVSLKGD-FQTVLISGFNVVSLLVQNGLHNVKL---VEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRD 200 (477)
T ss_dssp HHHHCSCSS-HHHHHHHHHHHHHHHTSTTTCCHHH---HHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHH
T ss_pred HHHHhccCc-hhHHHHHHHHHHHHHHhccccccch---HHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhc-CccHHH
Confidence 333344444 5666667777777777654433221 12233333333222223678889889998888854 567787
Q ss_pred HHHh--hCcHHHHHHHhccC--C--------------h---HHHHHHHHhcccccCCcccccccc--CchHHHHHhhcCC
Q 004073 510 LMLA--AGVIPLLEKMISNS--N--------------S---HGAATALYLNLSFLDDAKPIIGSS--HAVPFLVELCKGK 566 (775)
Q Consensus 510 ~i~~--~G~i~~Lv~lL~s~--~--------------~---~~~AaaaL~~Ls~~~~~k~~I~~~--g~i~~LV~LL~~~ 566 (775)
.+.. ...+++|+.+|+.. . . .=.++-++..||...+....+... +.|+.|+.+++..
T Consensus 201 ~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s 280 (477)
T d1ho8a_ 201 VIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKIT 280 (477)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHC
T ss_pred HHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 7653 44778888887541 0 0 112555556677766555555443 4599999999866
Q ss_pred CCHHHHHHHHHHHHHhcCCCC--C----hHHHHHcCcHHHHHHhccC--CChHHHHHHHHHHHH-------HhC------
Q 004073 567 TEHQCKLDALHALYNLSTIPS--N----IPNLLSAGIISGLQSLAVP--GDPMWTEKSLAVLLN-------LAA------ 625 (775)
Q Consensus 567 ~~~~~k~~Al~aL~nLs~~~~--n----k~~iv~aG~V~~Lv~LL~~--~~~~i~e~al~~L~n-------La~------ 625 (775)
....+.+-++.+|.||+.... + ...|+..++++.+-.|... .++.+.+..-.+-.. |++
T Consensus 281 ~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~ 360 (477)
T d1ho8a_ 281 IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVA 360 (477)
T ss_dssp CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 578999999999999986543 2 3345566666554334332 345443332222111 121
Q ss_pred ---------CcccH-HHHh--------h-CCCcHHHHHHHhcC----------CCHHHHHHHHHHHHHhhcCChHhHHHH
Q 004073 626 ---------SAAGK-EEMN--------S-TPGLVSGLATVLDT----------GELIEQEQAVSCLFLLCNGNEKCCQMV 676 (775)
Q Consensus 626 ---------~~e~~-~~i~--------~-~~g~I~~Lv~lL~~----------~s~~~~e~Av~~L~~Lc~~~~~~~~~v 676 (775)
++-.+ +.+- + ....+..|+++|.+ .++.+..-|+.=+..+|+.-|..+..+
T Consensus 361 Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il 440 (477)
T d1ho8a_ 361 ELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVL 440 (477)
T ss_dssp HHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHH
Confidence 12222 1111 1 12357889999962 244455555666778888777788888
Q ss_pred HHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHh
Q 004073 677 LQEGVIPALVSISVNGSTRGRDKAQRLLMLFRE 709 (775)
Q Consensus 677 ~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~ 709 (775)
-+-|+=..++.|+.+.++++|..|...++.+-.
T Consensus 441 ~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 473 (477)
T d1ho8a_ 441 DKTGGKADIMELLNHSDSRVKYEALKATQAIIG 473 (477)
T ss_dssp HHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 888887788899999999999999988876643
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.01 E-value=0.00041 Score=59.64 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=75.4
Q ss_pred cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHHHHHhCCcccHHH
Q 004073 553 SHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVLLNLAASAAGKEE 632 (775)
Q Consensus 553 ~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L~nLa~~~e~~~~ 632 (775)
..++++|+.+|.++ ++.++..|+++|.++.. .++++.|+.+|.+.++.++..|+.+|..+..
T Consensus 21 ~~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~------- 82 (111)
T d1te4a_ 21 DEAFEPLLESLSNE-DWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------- 82 (111)
T ss_dssp STTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHhcch----------hhhHHHHHhhhccchhHHHHHHHHHHHHhCc-------
Confidence 35789999999998 99999999999987642 3478999999999999999999999987632
Q ss_pred HhhCCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 004073 633 MNSTPGLVSGLATVLDTGELIEQEQAVSCLF 663 (775)
Q Consensus 633 i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~ 663 (775)
.+.++.|..++.+.++.++..|+.+|-
T Consensus 83 ----~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 83 ----ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp ----HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ----cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 356888889999999999999988763
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.011 Score=70.64 Aligned_cols=270 Identities=13% Similarity=0.081 Sum_probs=162.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKE 509 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~ 509 (775)
.+...+...++..++..|+..|..++......-... ...+++.|+..|.+ .+..++..|+.+|..++......
T Consensus 134 ~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~-~~~il~~l~~~l~~----~~~~vR~~A~~~l~~l~~~~~~~-- 206 (1207)
T d1u6gc_ 134 RLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTS----PRLAVRKRTIIALGHLVMSCGNI-- 206 (1207)
T ss_dssp HHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGC----SSHHHHHHHHHHHHHHTTTC-----
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH-HHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHCCHH--
Confidence 344445555578899999999988876433110000 12345555555555 78889999999999996432221
Q ss_pred HHHhhCcHHHHHHHhccCCh---HHHHHHHHhcccccCCccccccc--cCchHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 004073 510 LMLAAGVIPLLEKMISNSNS---HGAATALYLNLSFLDDAKPIIGS--SHAVPFLVELCKGKTEHQCKLDALHALYNLST 584 (775)
Q Consensus 510 ~i~~~G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~~k~~I~~--~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~ 584 (775)
.-...++.++..|..... +..++.++..++..... .++. ...++.+++.+.+. +.++++.++.++..+..
T Consensus 207 --~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~ 281 (1207)
T d1u6gc_ 207 --VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVD-DDELREYCIQAFESFVR 281 (1207)
T ss_dssp ---CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch--hhHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHH
Confidence 113457777776654322 34455555555433222 2222 57899999999988 88899999999988864
Q ss_pred CCCChHHHHHcCcHHHHHHhc-------------------------------------cCCChHHHHHHHHHHHHHhCCc
Q 004073 585 IPSNIPNLLSAGIISGLQSLA-------------------------------------VPGDPMWTEKSLAVLLNLAASA 627 (775)
Q Consensus 585 ~~~nk~~iv~aG~V~~Lv~LL-------------------------------------~~~~~~i~e~al~~L~nLa~~~ 627 (775)
...+...-.-..+++.++..+ .+....++..++.+|..+....
T Consensus 282 ~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~ 361 (1207)
T d1u6gc_ 282 RCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR 361 (1207)
T ss_dssp CTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTC
T ss_pred hChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHH
Confidence 332211111111222222211 1122356677888888887653
Q ss_pred -ccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC---h-------------HhHHHHH--HCCCHHHHHHh
Q 004073 628 -AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGN---E-------------KCCQMVL--QEGVIPALVSI 688 (775)
Q Consensus 628 -e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~---~-------------~~~~~v~--~~G~i~~Lv~L 688 (775)
+....+.. ..++.|+..+...++.++..++.++..+.... . .....+. -..+++.+...
T Consensus 362 ~~~l~~~~~--~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~ 439 (1207)
T d1u6gc_ 362 HEMLPEFYK--TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ 439 (1207)
T ss_dssp CTTHHHHHT--TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHH
Confidence 33334443 58899999998888999999988887775311 0 0011111 12356667777
Q ss_pred hhcCChHHHHHHHHHHHHhHhccCC
Q 004073 689 SVNGSTRGRDKAQRLLMLFREQRQR 713 (775)
Q Consensus 689 l~~g~~~~k~kA~~LL~~L~~~~~~ 713 (775)
+.+.+..++..|..++..+....+.
T Consensus 440 l~~~~~~~r~~~~~~l~~l~~~~~~ 464 (1207)
T d1u6gc_ 440 MKEKSVKTRQCCFNMLTELVNVLPG 464 (1207)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred hcCCchhHHHHHHHHHHHHHHHcch
Confidence 7888999999999998888765443
|
| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: UbcM4-interacting protein 4 (KIAA0161) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.00034 Score=58.80 Aligned_cols=44 Identities=16% Similarity=0.459 Sum_probs=33.5
Q ss_pred cccccccccccc--C-ceecCCCCccchHHHHHHHh----cCC---CCCCCCCC
Q 004073 282 ELRCPISLQLMY--D-PVIIASGQTYERICIEKWLS----DGH---STCPKTQQ 325 (775)
Q Consensus 282 ~f~CPIs~~~m~--d-PV~~~~G~ty~r~~I~~w~~----~~~---~~CP~t~~ 325 (775)
.--||||++-+. + |++..|||.||+.||..|+. +|. -.||.|+-
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C 58 (94)
T d1wima_ 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC 58 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence 356999999875 3 55568999999999999985 233 25998653
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.0092 Score=69.23 Aligned_cols=275 Identities=14% Similarity=0.009 Sum_probs=147.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCc
Q 004073 427 RYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNR 506 (775)
Q Consensus 427 ~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~ 506 (775)
.+..++..|.+. ++.+|..|++.|..++.........-.-...++.|+..+.+ .++.+|+.|+.+|.++......
T Consensus 437 li~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d----~~~~V~~~a~~al~~l~~~~~~ 511 (888)
T d1qbkb_ 437 LIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD----SNKRVQEAACSAFATLEEEACT 511 (888)
T ss_dssp HHHHHHHHTTSS-CHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSS----SCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHhccCC-CHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhhh
Confidence 344556666666 89999999999988775211110011123567777777766 6899999999999998632111
Q ss_pred hhHHHHhhCcHHHHHHHhccCChH--HHHHHHHhcccc--------------------------cCCccccc--------
Q 004073 507 NKELMLAAGVIPLLEKMISNSNSH--GAATALYLNLSF--------------------------LDDAKPII-------- 550 (775)
Q Consensus 507 nk~~i~~~G~i~~Lv~lL~s~~~~--~~AaaaL~~Ls~--------------------------~~~~k~~I-------- 550 (775)
.-... -...++.|+..+...... ..+..++..++. .++.+...
T Consensus 512 ~l~p~-~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~ 590 (888)
T d1qbkb_ 512 ELVPY-LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSS 590 (888)
T ss_dssp SSGGG-HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHH
T ss_pred hhhhH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 11100 123445555555443321 111111111110 00000000
Q ss_pred -c-c--cCchH-------HHHHhhc----------------CCCCHHHHHHHHHHHHHhcC--CCCChHHHHHcCcHHHH
Q 004073 551 -G-S--SHAVP-------FLVELCK----------------GKTEHQCKLDALHALYNLST--IPSNIPNLLSAGIISGL 601 (775)
Q Consensus 551 -~-~--~g~i~-------~LV~LL~----------------~~~~~~~k~~Al~aL~nLs~--~~~nk~~iv~aG~V~~L 601 (775)
. . .+..| .+++++. ...+.+....++.++..+.. .......+.....++.+
T Consensus 591 i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l 670 (888)
T d1qbkb_ 591 VATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLM 670 (888)
T ss_dssp HHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHH
T ss_pred HHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHH
Confidence 0 0 01111 1111110 00123344445555555542 11222222334566777
Q ss_pred HHhccCCChHHHHHHHHHHHHHhCC-cccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCC
Q 004073 602 QSLAVPGDPMWTEKSLAVLLNLAAS-AAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEG 680 (775)
Q Consensus 602 v~LL~~~~~~i~e~al~~L~nLa~~-~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G 680 (775)
...+.+.+..++..|..+|..|+.. ...-...+. ..++.|+..|....+.++.+|++++..|+..-.+...-.+ ..
T Consensus 671 ~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~--~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~-~~ 747 (888)
T d1qbkb_ 671 YQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI-PM 747 (888)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS-HH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH-HH
Confidence 7778888889999999999888763 222222222 3566677777778889999999999988864322211111 13
Q ss_pred CHHHHHHhhhcCC--hHHHHHHHHHHHHhHhc
Q 004073 681 VIPALVSISVNGS--TRGRDKAQRLLMLFREQ 710 (775)
Q Consensus 681 ~i~~Lv~Ll~~g~--~~~k~kA~~LL~~L~~~ 710 (775)
+++.|+.++.+++ ..++++++..|-.|...
T Consensus 748 il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~ 779 (888)
T d1qbkb_ 748 VLHQLVEIINRPNTPKTLLENTAITIGRLGYV 779 (888)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence 6778888887653 45889999888666543
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.028 Score=63.53 Aligned_cols=264 Identities=9% Similarity=0.013 Sum_probs=164.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCch
Q 004073 428 YQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRN 507 (775)
Q Consensus 428 i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~n 507 (775)
+..++....++ +.+++..|=..|..+.+.+. .|++..|...+.+. ..+..++..|+..|.|.-..+...
T Consensus 3 l~~~L~~~~s~-d~~~r~~Ae~~L~~~~~~~~--------~~f~~~L~~i~~~~--~~~~~iR~~A~i~lKn~i~~~~~~ 71 (876)
T d1qgra_ 3 LITILEKTVSP-DRLELEAAQKFLERAAVENL--------PTFLVELSRVLANP--GNSQVARVAAGLQIKNSLTSKDPD 71 (876)
T ss_dssp HHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHhCc-CHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhccccc
Confidence 34566666677 88999999999988776532 46788888888652 246778888888888874322211
Q ss_pred hHH-----------HHhhCcHHHHHHHhccCCh-HHHHHHHHhcccccCCccccccc-cCchHHHHHhhcCC-CCHHHHH
Q 004073 508 KEL-----------MLAAGVIPLLEKMISNSNS-HGAATALYLNLSFLDDAKPIIGS-SHAVPFLVELCKGK-TEHQCKL 573 (775)
Q Consensus 508 k~~-----------i~~~G~i~~Lv~lL~s~~~-~~~AaaaL~~Ls~~~~~k~~I~~-~g~i~~LV~LL~~~-~~~~~k~ 573 (775)
... =........|+..|.+.+. +..++.++..++..+-. ... .+.++.|+..+.++ .+...+.
T Consensus 72 ~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~~~~~~a~~i~~i~~~~~p---~~~Wpeli~~L~~~l~~~~~~~~~~~ 148 (876)
T d1qgra_ 72 IKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIP---VNQWPELIPQLVANVTNPNSTEHMKE 148 (876)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSSCHHHHHHHHHHHHHGG---GTCCTTHHHHHHHHHHCTTCCHHHHH
T ss_pred hhhhhhcccccCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHCC---ccccHHHHHHHHHHhcCCCCcHHHHH
Confidence 110 0112344567777766554 23344555555443210 011 47899999988654 2467888
Q ss_pred HHHHHHHHhcCCCCChHHHHH--cCcHHHHHHhccC--CChHHHHHHHHHHHHHhCCcccHH---HHhhCCCcHHHHHHH
Q 004073 574 DALHALYNLSTIPSNIPNLLS--AGIISGLQSLAVP--GDPMWTEKSLAVLLNLAASAAGKE---EMNSTPGLVSGLATV 646 (775)
Q Consensus 574 ~Al~aL~nLs~~~~nk~~iv~--aG~V~~Lv~LL~~--~~~~i~e~al~~L~nLa~~~e~~~---~i~~~~g~I~~Lv~l 646 (775)
.++.+|..++..-.. ..+.. ..+++.++..+.+ .+..++..++.++.++........ .+.. -.+..+...
T Consensus 149 ~~l~~l~~i~~~~~~-~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~--~i~~~l~~~ 225 (876)
T d1qgra_ 149 STLEAIGYICQDIDP-EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH--FIMQVVCEA 225 (876)
T ss_dssp HHHHHHHHHHHHSCH-HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHH--HHHHHHHHH
Confidence 999999998743221 11111 3467777776654 346777888888887764322111 1111 245556667
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhH
Q 004073 647 LDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFR 708 (775)
Q Consensus 647 L~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~ 708 (775)
+...++.++..++.+|..++...++.....+...+.+.+........+.++..|...+..+.
T Consensus 226 ~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 287 (876)
T d1qgra_ 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (876)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 77889999999999999998755444444444445555666677778888888777665554
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.07 E-value=0.029 Score=59.78 Aligned_cols=232 Identities=14% Similarity=0.131 Sum_probs=150.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc--cCchHHHHHHhchhccC-------------CCHHHHHHHH
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA--NGFVVALLRFLESAVCE-------------RNSYAQEIGA 494 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~--~G~I~~Lv~lL~s~~~~-------------~d~~~qe~A~ 494 (775)
.++..|..+.+.+.+.-++..+..+... ++.|..+.. ...+++|++.|....+. .+...|.+++
T Consensus 168 ~~l~~l~~~~~~~~~~i~v~~lq~llr~-~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~l 246 (477)
T d1ho8a_ 168 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 246 (477)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhhcccccchHHHHHHHHHHHhcC-ccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHH
Confidence 4555554444788888888888888876 677877643 56788999988764332 2346789999
Q ss_pred HHHHHhhccCCchhHHHHhh--CcHHHHHHHhccCCh---HHHHHHHHhcccccCC--ccc----cccccCchHHHHHhh
Q 004073 495 MALFNLAVNNNRNKELMLAA--GVIPLLEKMISNSNS---HGAATALYLNLSFLDD--AKP----IIGSSHAVPFLVELC 563 (775)
Q Consensus 495 ~aL~nLs~~~~~nk~~i~~~--G~i~~Lv~lL~s~~~---~~~AaaaL~~Ls~~~~--~k~----~I~~~g~i~~LV~LL 563 (775)
-++.-|+. +......+.+. +.++.|+.+++.... ...+++++.|+..... ++. .+...+++ +++..|
T Consensus 247 l~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l-~~l~~L 324 (477)
T d1ho8a_ 247 LLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSL 324 (477)
T ss_dssp HHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHH
T ss_pred HHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh-HHHHHH
Confidence 99999976 55566666665 459999999976553 2558888999876432 211 22223444 556666
Q ss_pred cCC--CCHHHHHHHHHHHHH--------hcCCCC------------------------ChHHHHH--cCcHHHHHHhccC
Q 004073 564 KGK--TEHQCKLDALHALYN--------LSTIPS------------------------NIPNLLS--AGIISGLQSLAVP 607 (775)
Q Consensus 564 ~~~--~~~~~k~~Al~aL~n--------Ls~~~~------------------------nk~~iv~--aG~V~~Lv~LL~~ 607 (775)
... .|+++.++. ..|.. |++.++ |..++-+ -.++..|+++|.+
T Consensus 325 ~~r~~~Dedl~edl-~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~ 403 (477)
T d1ho8a_ 325 SERKYSDEELRQDI-SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQA 403 (477)
T ss_dssp HSSCCSSHHHHHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHH-HHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhh
Confidence 543 356554432 22222 222211 2222222 1367788888851
Q ss_pred ----------CChHHHHHHHHHHHHHhC-CcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 004073 608 ----------GDPMWTEKSLAVLLNLAA-SAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 608 ----------~~~~i~e~al~~L~nLa~-~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc 666 (775)
.++.+..-|+.=|..++. .|+||..+-.- |+=..++++|.+.++.++.+|+.++..|-
T Consensus 404 ~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~l-g~K~~vM~Lm~h~d~~Vr~eAL~avQklm 472 (477)
T d1ho8a_ 404 KVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKT-GGKADIMELLNHSDSRVKYEALKATQAII 472 (477)
T ss_dssp HHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH-SHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHc-CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 245555566667777777 57777777664 88888999999999999999999887654
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.44 E-value=0.47 Score=52.68 Aligned_cols=277 Identities=10% Similarity=0.051 Sum_probs=155.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhc--cCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhcc
Q 004073 426 ERYQDFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGA--NGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVN 503 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~--~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~ 503 (775)
+.+..++..+.+..+...+..|+..|..++......-..+.. ...+..++..+.+ ...+..++..|+.+|.++...
T Consensus 134 eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~--~~~~~~v~~~a~~~l~~~~~~ 211 (861)
T d2bpta1 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQS--TETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc--ccCCHHHHHHHHHHHHHHHHH
Confidence 556667777776645677778888888887543221111111 1223333433332 125678899999999888543
Q ss_pred CCchh-HHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCccccccc--cCchHHH-HHhhcCCCCHHHHHHHHH
Q 004073 504 NNRNK-ELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDAKPIIGS--SHAVPFL-VELCKGKTEHQCKLDALH 577 (775)
Q Consensus 504 ~~~nk-~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~k~~I~~--~g~i~~L-V~LL~~~~~~~~k~~Al~ 577 (775)
-..+- ........++.|...+..++. +..+..++..+..... ..+.. ...+..+ ....++. ++.++..++.
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~--~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~ 288 (861)
T d2bpta1 212 IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY--TFMKPYMEQALYALTIATMKSP-NDKVASMTVE 288 (861)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG--GGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHH
T ss_pred HhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHH
Confidence 22221 111223456777777777665 3446666655543211 11111 1233333 3444455 8889998888
Q ss_pred HHHHhcCCCC-----------------ChHHHHHcCcHHHHHHhccC-------CChHHHHHHHHHHHHHhCCcccHHHH
Q 004073 578 ALYNLSTIPS-----------------NIPNLLSAGIISGLQSLAVP-------GDPMWTEKSLAVLLNLAASAAGKEEM 633 (775)
Q Consensus 578 aL~nLs~~~~-----------------nk~~iv~aG~V~~Lv~LL~~-------~~~~i~e~al~~L~nLa~~~e~~~~i 633 (775)
.+..++.... +...-.-...++.+...+.. .+......+..+|..++....+. +
T Consensus 289 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 366 (861)
T d2bpta1 289 FWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH--I 366 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG--G
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchh--h
Confidence 8877653211 11111112345556665532 12234455556666655432211 1
Q ss_pred hhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 634 NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 634 ~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
.. -..+.+...+.+.+...++.|+.++..+..........-.-..+++.++..+.+.++.+|..|...+..+...-
T Consensus 367 ~~--~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 442 (861)
T d2bpta1 367 LE--PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSV 442 (861)
T ss_dssp HH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred hh--hhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHh
Confidence 11 12334444556778899999999999988754332222222336888889999999999999999998776553
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.92 Score=50.39 Aligned_cols=279 Identities=13% Similarity=0.078 Sum_probs=157.6
Q ss_pred hHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccC
Q 004073 426 ERYQDFLNVLNEGE-NLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNN 504 (775)
Q Consensus 426 ~~i~~Ll~~L~s~~-~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~ 504 (775)
+.+..++..+.+++ +...+..++..|..++++-......-.-...++.++..+.+. ..+..++..|+.++.++....
T Consensus 128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~--~~~~~v~~~a~~~l~~~~~~~ 205 (876)
T d1qgra_ 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTT--CSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCc--CccHHHHHHHHHHHHHHHHHh
Confidence 56677777776552 356777888888888764221111111145678888877652 245788888888888774321
Q ss_pred Cch-hHHHHhhCcHHHHHHHhccCCh--HHHHHHHHhcccccCCc--cccccccCchHHHHHhhcCCCCHHHHHHHHHHH
Q 004073 505 NRN-KELMLAAGVIPLLEKMISNSNS--HGAATALYLNLSFLDDA--KPIIGSSHAVPFLVELCKGKTEHQCKLDALHAL 579 (775)
Q Consensus 505 ~~n-k~~i~~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~~~--k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL 579 (775)
... .......-.++.+...+.+++. +..++..+..+...... ...+ .....+.+...+.+. +..+...++..+
T Consensus 206 ~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 283 (876)
T d1qgra_ 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSD-IDEVALQGIEFW 283 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTCS-SHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 111 0111112245556666666654 34566666555432211 1111 123445566666776 788888887766
Q ss_pred HHhcCC---------------------CCChHHHHHcCcHHHHHHhccC-------CChHHHHHHHHHHHHHhCCcccHH
Q 004073 580 YNLSTI---------------------PSNIPNLLSAGIISGLQSLAVP-------GDPMWTEKSLAVLLNLAASAAGKE 631 (775)
Q Consensus 580 ~nLs~~---------------------~~nk~~iv~aG~V~~Lv~LL~~-------~~~~i~e~al~~L~nLa~~~e~~~ 631 (775)
..++.. ..+-........++.+...+.. .+..+...|..+|..++.....
T Consensus 284 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-- 361 (876)
T d1qgra_ 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-- 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--
T ss_pred HHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh--
Confidence 666421 1111112222344445554422 1223446666666666543211
Q ss_pred HHhhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHHHHHHHhHhcc
Q 004073 632 EMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQR 711 (775)
Q Consensus 632 ~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc~~~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~~LL~~L~~~~ 711 (775)
.+.. ..++.+...+.+.+...++.++.++..+..........-.-..+++.++..+.+.++.+|..|...+..+.+.-
T Consensus 362 ~~~~--~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 439 (876)
T d1qgra_ 362 DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (876)
T ss_dssp GGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC
T ss_pred hhhh--hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHc
Confidence 1111 23444555566788899999988888887643222111222346788888899999999999999998887654
Q ss_pred C
Q 004073 712 Q 712 (775)
Q Consensus 712 ~ 712 (775)
.
T Consensus 440 ~ 440 (876)
T d1qgra_ 440 P 440 (876)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.49 E-value=4.3 Score=40.24 Aligned_cols=197 Identities=14% Similarity=0.029 Sum_probs=141.3
Q ss_pred hhccCchHHHHHHhchhccCCCHHHHHHHHHHHHHhhccCCchhHH----HHh-hCcHHHHHHHhccCChHHHHHHHHhc
Q 004073 465 TGANGFVVALLRFLESAVCERNSYAQEIGAMALFNLAVNNNRNKEL----MLA-AGVIPLLEKMISNSNSHGAATALYLN 539 (775)
Q Consensus 465 i~~~G~I~~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~nk~~----i~~-~G~i~~Lv~lL~s~~~~~~AaaaL~~ 539 (775)
+...+.+..|+..|.. -+-+.+..++.+..++-.....++.. +.. ..++..|+.-..+...--.+-.+|..
T Consensus 65 ~~~~d~l~~Li~~L~~----L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLRE 140 (330)
T d1upka_ 65 LYNSGLLSTLVADLQL----IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRE 140 (330)
T ss_dssp HHHHSHHHHHHHTGGG----SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHhChHHHHHHhCCC----CCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHH
Confidence 4456888888888887 78899999988888875433333322 222 23555555554444433445555566
Q ss_pred ccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC-CChHHHHHcC---cHHHHHHhccCCChHHHHH
Q 004073 540 LSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIP-SNIPNLLSAG---IISGLQSLAVPGDPMWTEK 615 (775)
Q Consensus 540 Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~-~nk~~iv~aG---~V~~Lv~LL~~~~~~i~e~ 615 (775)
...++.....|..+..+..+.+.+..+ +-++..+|..++..|-..+ ......+... .......||.+++-.++..
T Consensus 141 cik~e~lak~iL~s~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRq 219 (330)
T d1upka_ 141 CIRHEPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 219 (330)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHhhHHHHHHHHccHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHH
Confidence 666666666666677788899999998 9999999999999987544 3344444433 4555667899999999999
Q ss_pred HHHHHHHHhCCcccHHHH---hhCCCcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 004073 616 SLAVLLNLAASAAGKEEM---NSTPGLVSGLATVLDTGELIEQEQAVSCLFLLC 666 (775)
Q Consensus 616 al~~L~nLa~~~e~~~~i---~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L~~Lc 666 (775)
++..|..|-..+.+...+ +.+..-+..++.+|++.+..+|=.|..++--..
T Consensus 220 SlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFV 273 (330)
T d1upka_ 220 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV 273 (330)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhh
Confidence 999999999888777654 445566888999999999999999998875443
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=89.49 E-value=0.053 Score=52.72 Aligned_cols=83 Identities=11% Similarity=-0.020 Sum_probs=40.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHHcCcHHHHHHhccCCChHHHHHHHHHH-----HHHhCCcc--c
Q 004073 557 PFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLSAGIISGLQSLAVPGDPMWTEKSLAVL-----LNLAASAA--G 629 (775)
Q Consensus 557 ~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~aG~V~~Lv~LL~~~~~~i~e~al~~L-----~nLa~~~e--~ 629 (775)
+.|..+++++ +..++..++.. -..+.|..++.+.+..++..++..| ..|+..++ .
T Consensus 141 ~~L~~L~~D~-d~~VR~~aA~~-----------------~~~~~L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D~d~~V 202 (233)
T d1lrva_ 141 GRLFRFMRDE-DRQVRKLVAKR-----------------LPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTV 202 (233)
T ss_dssp GGGGGTTTCS-CHHHHHHHHHH-----------------SCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHH
T ss_pred hHHHHHhcCC-CHHHHHHHHHh-----------------cCHHHHHHHccCCCHHHHHHHHHhcCcHHHHHHHhCCCHHH
Confidence 4455566666 67776665532 1234455566666666655555332 12222211 2
Q ss_pred HHHHhhCCCcHHHHHHHhcCCCHHHHHHHH
Q 004073 630 KEEMNSTPGLVSGLATVLDTGELIEQEQAV 659 (775)
Q Consensus 630 ~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av 659 (775)
|..+..+ ..+.++..|...++.+++.|+
T Consensus 203 R~aaae~--~~~~ll~~L~D~d~~VR~aA~ 230 (233)
T d1lrva_ 203 RLAAVEH--ASLEALRELDEPDPEVRLAIA 230 (233)
T ss_dssp HHHHHHH--SCHHHHHHCCCCCHHHHHHHH
T ss_pred HHHHHHh--ccHHHHHHhCCCCHHHHHHHH
Confidence 2222222 224455556666666666654
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.71 E-value=6.6 Score=39.33 Aligned_cols=182 Identities=20% Similarity=0.145 Sum_probs=112.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhhHHhhccCchHHHHHHhchhc-------cCCCHHHHHHHHHHHHHhhc
Q 004073 430 DFLNVLNEGENLGQKCNIVEQIRLLLKDDEEARVFTGANGFVVALLRFLESAV-------CERNSYAQEIGAMALFNLAV 502 (775)
Q Consensus 430 ~Ll~~L~s~~~~~~q~~Al~~L~~Lak~~~~nr~~i~~~G~I~~Lv~lL~s~~-------~~~d~~~qe~A~~aL~nLs~ 502 (775)
.+|..|.++-..+...+.+..|+.-.+.++-.+..=..++|+..|+.+|..-. ...+...+...+.+|..+.
T Consensus 6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm- 84 (343)
T d2bnxa1 6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM- 84 (343)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHHHhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh-
Confidence 45556665534444455666776667776655544235678888988885421 1134667888899999985
Q ss_pred cCCchhHHHH-hhCcHHHHHHHhccCCh--HHHHHHHHhcccccC---C-cc---------ccccccCchHHHHHhhcCC
Q 004073 503 NNNRNKELML-AAGVIPLLEKMISNSNS--HGAATALYLNLSFLD---D-AK---------PIIGSSHAVPFLVELCKGK 566 (775)
Q Consensus 503 ~~~~nk~~i~-~~G~i~~Lv~lL~s~~~--~~~AaaaL~~Ls~~~---~-~k---------~~I~~~g~i~~LV~LL~~~ 566 (775)
++......++ ..+++..|+..|.+... +..|.-+|..++... + .. ...++.+-..++|+.|+.+
T Consensus 85 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~ 164 (343)
T d2bnxa1 85 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 164 (343)
T ss_dssp SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred ccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc
Confidence 3444444444 56799999999988765 345666665554322 1 11 1223456788999999877
Q ss_pred CCHHHHHHHHHHHHHhcCCCCC-------hHHHHHcCcHHHHHHhccCCChHH
Q 004073 567 TEHQCKLDALHALYNLSTIPSN-------IPNLLSAGIISGLQSLAVPGDPMW 612 (775)
Q Consensus 567 ~~~~~k~~Al~aL~nLs~~~~n-------k~~iv~aG~V~~Lv~LL~~~~~~i 612 (775)
.+.+.+..++..+-.|....++ |..+..+|..+.+-.+=...++.+
T Consensus 165 ~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L 217 (343)
T d2bnxa1 165 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 217 (343)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred ccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccCChHH
Confidence 5677777666666666655553 555667887766555443344443
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=81.22 E-value=0.34 Score=46.71 Aligned_cols=152 Identities=12% Similarity=0.072 Sum_probs=79.8
Q ss_pred CcHHHHHHHhccCChHHHHHHHHhcccccCCccccccccCchHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCCChHHHHH
Q 004073 515 GVIPLLEKMISNSNSHGAATALYLNLSFLDDAKPIIGSSHAVPFLVELCKGKTEHQCKLDALHALYNLSTIPSNIPNLLS 594 (775)
Q Consensus 515 G~i~~Lv~lL~s~~~~~~AaaaL~~Ls~~~~~k~~I~~~g~i~~LV~LL~~~~~~~~k~~Al~aL~nLs~~~~nk~~iv~ 594 (775)
-.+..|+.+++.++......++. +|. .+.|..|+.++ +..++..++..| +
T Consensus 66 a~~~~L~~Ll~D~d~~VR~~AA~-~Lp--------------~~~L~~L~~D~-d~~VR~~aa~~l---~----------- 115 (233)
T d1lrva_ 66 SPVEALTPLIRDSDEVVRRAVAY-RLP--------------REQLSALMFDE-DREVRITVADRL---P----------- 115 (233)
T ss_dssp SCGGGGGGGTTCSSHHHHHHHHT-TSC--------------SGGGGGTTTCS-CHHHHHHHHHHS---C-----------
T ss_pred CCHHHHHHHhcCCCHHHHHHHHH-HcC--------------HHHHHHHhcCC-ChhHHHHHHhcc---C-----------
Confidence 45778888888887777777763 231 35677778887 898888876543 1
Q ss_pred cCcHHHHHHhccCCChHHHHHHHHH-----HHHHhCCc--ccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH-----
Q 004073 595 AGIISGLQSLAVPGDPMWTEKSLAV-----LLNLAASA--AGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL----- 662 (775)
Q Consensus 595 aG~V~~Lv~LL~~~~~~i~e~al~~-----L~nLa~~~--e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L----- 662 (775)
.+.|..++.+++..++..++.. |..|...+ +.|..+... -..+.|..++...++.++..++..|
T Consensus 116 ---~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~-~~~~~L~~l~~D~d~~VR~~aa~~L~~~~L 191 (233)
T d1lrva_ 116 ---LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKR-LPEESLGLMTQDPEPEVRRIVASRLRGDDL 191 (233)
T ss_dssp ---TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHH-SCGGGGGGSTTCSSHHHHHHHHHHCCGGGG
T ss_pred ---HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHh-cCHHHHHHHccCCCHHHHHHHHHhcCcHHH
Confidence 2234444444444444333321 11111111 112222221 2234556666677777777766543
Q ss_pred HHhhcC-ChHhHHHHHHCCCHHHHHHhhhcCChHHHHHHH
Q 004073 663 FLLCNG-NEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQ 701 (775)
Q Consensus 663 ~~Lc~~-~~~~~~~v~~~G~i~~Lv~Ll~~g~~~~k~kA~ 701 (775)
..+... +...+..+.+. +.+.++..+.+.++.+|+.|.
T Consensus 192 ~~l~~D~d~~VR~aaae~-~~~~ll~~L~D~d~~VR~aA~ 230 (233)
T d1lrva_ 192 LELLHDPDWTVRLAAVEH-ASLEALRELDEPDPEVRLAIA 230 (233)
T ss_dssp GGGGGCSSHHHHHHHHHH-SCHHHHHHCCCCCHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHh-ccHHHHHHhCCCCHHHHHHHH
Confidence 233322 22334344333 334455555667777776665
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.03 E-value=7.2 Score=39.06 Aligned_cols=116 Identities=16% Similarity=0.039 Sum_probs=82.1
Q ss_pred HcCcHHHHHHhcc----C-------CChHHHHHHHHHHHHHhCCcccHHHHhhCCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 004073 594 SAGIISGLQSLAV----P-------GDPMWTEKSLAVLLNLAASAAGKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCL 662 (775)
Q Consensus 594 ~aG~V~~Lv~LL~----~-------~~~~i~e~al~~L~nLa~~~e~~~~i~~~~g~I~~Lv~lL~~~s~~~~e~Av~~L 662 (775)
.++|+..|+.+|. . .+....-.++.+|..|..+..|...++.++.+|..|+..|.+..+.++..|+.+|
T Consensus 43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL 122 (343)
T d2bnxa1 43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 122 (343)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHH
Confidence 3556666777652 1 1234566799999999999999999999999999999999999999999999999
Q ss_pred HHhhcCC--hHhHH----------HHHHCCCHHHHHHhhhcC-ChHHHHHHHHHHHHhHh
Q 004073 663 FLLCNGN--EKCCQ----------MVLQEGVIPALVSISVNG-STRGRDKAQRLLMLFRE 709 (775)
Q Consensus 663 ~~Lc~~~--~~~~~----------~v~~~G~i~~Lv~Ll~~g-~~~~k~kA~~LL~~L~~ 709 (775)
..+|..+ ..... ...+.+-+..++.-+.++ +...+..+..++..+-.
T Consensus 123 ~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~ 182 (343)
T d2bnxa1 123 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 182 (343)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHc
Confidence 9999532 11122 222335677888655544 45555555556655544
|