Citrus Sinensis ID: 004081

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-----
MQGVCHLLTSIGIYCKEALSSCSAYELPCLDDSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVSAVSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALENENRQDEVDPLLSTP
ccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHcccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHcccccHHHHHHcccccccHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccc
cccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccHHHcccccccccHHHcccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccHccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccc
MQGVCHLLTSIGIYCKEAlsscsayelpclddssnELEALSeyenmdleniVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVsavsksqggdkcreaspsahapndamrefDSISGAFLRTNWQMQGYLMEQADAIekhgssfsLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRyfdysagtegfdfaqpsigcnsfGRYEIALLCLGMmhfhfghpkqaLDVLTEAVClsqqhsndTCLAYTLAAISNLLSEIgistttgilgssyspitsigtTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDlthvqrpllsfgpktamrlrtcptnvCKELRLASHLISdfvsesstmttdgafSTSWLKNlqkpmgslvltqenvsgkdsnafqfcaqpssipgsvlQLVGSSYLLRATAWEaygsapltrvNTLIYATcfsdgsslsDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMassvtgvdmdlktEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKcllsdpsfsvsqnpeavLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALEnenrqdevdpllstp
MQGVCHLLTSIGIYCKEALSSCSAYELPCLDDSSNELEALSEyenmdleniVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVSAVsksqggdkcreaspsahapndaMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAkfdlthvqrpllsfgpktamrlRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLAlenenrqdevdpllstp
MQGVCHLLTSIGIYCKEALSSCSAYELPCLDDSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVSAVSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAYGSAPLTRVNTLIYATCFsdgsslsdaalaHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRIlllklqllHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGrlaereeaaalFKEYVLALENENRQDEVDPLLSTP
***VCHLLTSIGIYCKEALSSCSAYELPCLDD****LEALSEYENMDLENIVFEKVNKE**********VSFHLHAPKALFGLVEDIKV******************************SISGAFLRTNWQMQGYLMEQADAIEKHGSSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSES*TMTTDGAFSTSWLKNLQKPMGSLVLT*********NAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD**********************LQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLAL****************
*QGVCHLLTSIGIYCKEALSSCSAYELPCLDDSSNELEALSEYENMDL**I******************************GLVE********************************************WQMQGYLMEQAD*********************QKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSA*********************IALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGI*********************SVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESS*********TSWLKNLQKPM**************SNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS***********AVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALE*****DEVDPLLST*
MQGVCHLLTSIGIYCKEALSSCSAYELPCLDDSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVS********************PNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALENEN************
*QGVCHLLTSIGIYCKEALSSCSAYELPCLDDSSNELEALSEYENMDLENIVFEKVNKEI********EVSF*******LFGLVEDIKVS*********************************AFLRTNWQMQGYLMEQADAIEKHGSSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFSTSWLKNLQKPMGSLV*T*****GKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALENE*************
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MQGVCHLLTSIGIYCKEALSSCSAYELPCLDDSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVSAVSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALENENRQDEVDPLLSTP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query775 2.2.26 [Sep-21-2011]
Q8H1U4916 Anaphase-promoting comple yes no 0.974 0.824 0.669 0.0
Q5RE52755 Anaphase-promoting comple yes no 0.429 0.441 0.251 1e-10
Q9UJX4755 Anaphase-promoting comple no no 0.429 0.441 0.251 1e-10
A1L1K3727 Anaphase-promoting comple yes no 0.445 0.474 0.254 8e-10
Q8BTZ4740 Anaphase-promoting comple yes no 0.428 0.448 0.24 6e-09
Q5ZKK3756 Anaphase-promoting comple yes no 0.437 0.448 0.247 8e-09
Q54VV5 1017 Anaphase-promoting comple yes no 0.215 0.164 0.254 2e-07
Q9P4W7744 Anaphase-promoting comple yes no 0.152 0.158 0.253 0.0005
>sp|Q8H1U4|APC5_ARATH Anaphase-promoting complex subunit 5 OS=Arabidopsis thaliana GN=APC5 PE=2 SV=1 Back     alignment and function desciption
 Score =  971 bits (2510), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/762 (66%), Positives = 614/762 (80%), Gaps = 7/762 (0%)

Query: 2   QGVCHLLTSIGIYCKEALSSCSAYELPCLDDSSNELEALSEYENMDLENIVFEKVNKEIE 61
           +GVCHL +SI  YCKEA SS + +  P     +N LE+L +Y+ MD+EN   +K  +EIE
Sbjct: 151 EGVCHLFSSIEDYCKEAHSSFAQFGAP-----NNNLESLIQYDQMDMENYAMDKPTEEIE 205

Query: 62  ARKKASEEVSFHLHAPKALFGLVEDIKVSAVSKSQGGDKCREASPSAHAPNDAMREFDSI 121
            +K AS  V FHLH P +L    E +  +    S+   K  EA+P A A    + E    
Sbjct: 206 FQKTASGIVPFHLHTPDSLMKATEGLLHNRKETSRTSKKDTEATPVARASTSTLEESLVD 265

Query: 122 SGAFLRTNWQMQGYLMEQADAIEKHGSSFSLNAFELI--LRQLQKLAPELHRVHFLRYLN 179
              FLRTN Q+QG+LMEQADAIE HGSS S ++  +   L QLQKLAPELHRVHFLRYLN
Sbjct: 266 ESLFLRTNLQIQGFLMEQADAIEIHGSSSSFSSSSIESFLDQLQKLAPELHRVHFLRYLN 325

Query: 180 SLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPK 239
            L+ DDYFAAL+NL RYFDYSAGTEGFD   PS GC+ +GRYEI LLCLGMMHF FGHP 
Sbjct: 326 KLHSDDYFAALDNLLRYFDYSAGTEGFDLVPPSTGCSMYGRYEIGLLCLGMMHFRFGHPN 385

Query: 240 QALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSPITSIGTTLS 299
            AL+VLTEAV +SQQ SNDTCLAYTLAA+SNLLSE+GI++T+G+LGSSYSP+TS  ++LS
Sbjct: 386 LALEVLTEAVRVSQQLSNDTCLAYTLAAMSNLLSEMGIASTSGVLGSSYSPVTSTASSLS 445

Query: 300 VQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPT 359
           VQQ++++LLKES RRA+SLKL+RLVA+NHLAMAKF+L HVQRPLLSFGPK +MR +TCP 
Sbjct: 446 VQQRVYILLKESLRRADSLKLRRLVASNHLAMAKFELMHVQRPLLSFGPKASMRHKTCPV 505

Query: 360 NVCKELRLASHLISDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQENVSGKDSNAFQ 419
           +VCKE+RL +HLISDF SESSTMT DG+ S++WLK+LQKP G  V++ ++ S K S  FQ
Sbjct: 506 SVCKEIRLGAHLISDFSSESSTMTIDGSLSSAWLKDLQKPWGPPVISPDSGSRKSSTFFQ 565

Query: 420 FCAQPSSIPGSVLQLVGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAH 479
            C    SIPGSV QL+G+SYLLRAT+WE YGSAP+ R+NTL+YAT F D SS SDA LA+
Sbjct: 566 LCDHLVSIPGSVSQLIGASYLLRATSWELYGSAPMARMNTLVYATLFGDSSSSSDAELAY 625

Query: 480 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVC 539
           +KLIQHLA++KGYK+AF+ALK+AEEKFL+VSKS++LLLKLQLLHER+LH G+LKLAQ++C
Sbjct: 626 LKLIQHLALYKGYKDAFAALKVAEEKFLTVSKSKVLLLKLQLLHERALHCGNLKLAQRIC 685

Query: 540 DELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENAS 599
           +ELG +AS+  GVDM+LK EASLR ARTLLAA Q+S+AA VAHSLFC C+KFNLQ+E AS
Sbjct: 686 NELGGLASTAMGVDMELKVEASLREARTLLAAKQYSQAANVAHSLFCTCHKFNLQIEKAS 745

Query: 600 VLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMA 659
           VLLLLAEIHKKSGNAVLG+PYALAS+SFCQ  NLDLLKASATLTLAELWL  G NH K A
Sbjct: 746 VLLLLAEIHKKSGNAVLGLPYALASISFCQSFNLDLLKASATLTLAELWLGLGSNHTKRA 805

Query: 660 SNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL 719
            +L+  A P+ILGHGGLELRARA+I EA C LSDPS SVS + + VLD LRQAS+ELQ L
Sbjct: 806 LDLLHGAFPMILGHGGLELRARAYIFEANCYLSDPSSSVSTDSDTVLDSLRQASDELQAL 865

Query: 720 EDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALEN 761
           E HELAAEA YL+A+V+DKLGRL EREEAA+LFK++++ALEN
Sbjct: 866 EYHELAAEASYLMAMVYDKLGRLDEREEAASLFKKHIIALEN 907
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5RE52|APC5_PONAB Anaphase-promoting complex subunit 5 OS=Pongo abelii GN=ANAPC5 PE=2 SV=1 Back     alignment and function description
>sp|Q9UJX4|APC5_HUMAN Anaphase-promoting complex subunit 5 OS=Homo sapiens GN=ANAPC5 PE=1 SV=2 Back     alignment and function description
>sp|A1L1K3|APC5_RAT Anaphase-promoting complex subunit 5 OS=Rattus norvegicus GN=Anapc5 PE=2 SV=1 Back     alignment and function description
>sp|Q8BTZ4|APC5_MOUSE Anaphase-promoting complex subunit 5 OS=Mus musculus GN=Anapc5 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZKK3|APC5_CHICK Anaphase-promoting complex subunit 5 OS=Gallus gallus GN=ANAPC5 PE=2 SV=1 Back     alignment and function description
>sp|Q54VV5|APC5_DICDI Anaphase-promoting complex subunit 5 OS=Dictyostelium discoideum GN=anapc5 PE=3 SV=1 Back     alignment and function description
>sp|Q9P4W7|APC5_SCHPO Anaphase-promoting complex subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apc5 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query775
302143524 921 unnamed protein product [Vitis vinifera] 0.994 0.837 0.785 0.0
255584099 917 conserved hypothetical protein [Ricinus 0.989 0.836 0.761 0.0
449438945 917 PREDICTED: anaphase-promoting complex su 0.980 0.828 0.738 0.0
356553615 922 PREDICTED: LOW QUALITY PROTEIN: anaphase 0.994 0.836 0.748 0.0
297848940 916 binding protein [Arabidopsis lyrata subs 0.974 0.824 0.667 0.0
30679744 916 anaphase-promoting complex subunit 5 [Ar 0.974 0.824 0.669 0.0
51970874 916 unnamed protein product [Arabidopsis tha 0.974 0.824 0.667 0.0
222617516 916 hypothetical protein OsJ_36942 [Oryza sa 0.949 0.803 0.569 0.0
218187288 911 hypothetical protein OsI_39198 [Oryza sa 0.943 0.802 0.565 0.0
108863003783 expressed protein [Oryza sativa Japonica 0.949 0.939 0.546 0.0
>gi|302143524|emb|CBI22085.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1216 bits (3146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/774 (78%), Positives = 678/774 (87%), Gaps = 3/774 (0%)

Query: 1   MQGVCHLLTSIGIYCKEALSSCSAYELPCLDDSSNELEALSEYENMDLENIVFEKVNKEI 60
            +GVCHLLT+IG YCKEALSSC  YELP LDDSSNE+EAL  YENMDLEN VF+KV +E 
Sbjct: 148 FEGVCHLLTNIGTYCKEALSSCPTYELPHLDDSSNEVEALLVYENMDLENFVFDKVTEET 207

Query: 61  EARKKASEEVSFHLHAPKALFGLVEDIKVSAVSKSQGGDKCREASPSAHAPNDAMREFDS 120
           EARK ASE+VSFH+HAPKALFGL+EDI+VSA  K +  +K  EAS  AH   D +R  D 
Sbjct: 208 EARKMASEKVSFHIHAPKALFGLIEDIEVSAELKFKHREKTGEASSFAHHMKDTLRGIDP 267

Query: 121 ISGAFLRTNWQMQGYLMEQADAIEKHGSSFSLNAFELILRQLQKLAPELHRVHFLRYLNS 180
             G FLRTNWQ+QGYL EQADAIEKH  SF LNAFE ILRQLQKLAPELHRVHFLRYLN+
Sbjct: 268 NGGIFLRTNWQIQGYLCEQADAIEKHSCSFPLNAFESILRQLQKLAPELHRVHFLRYLNN 327

Query: 181 LYHDDYFAALENLHRYFDYSAGTEGFDFAQP-SIGCNSFGRYEIALLCLGMMHFHFGHPK 239
           LYH+DY A+LENLH YFDYSAG EGFDF QP S   NSFGRYEIALLCLGMMHFHFGHPK
Sbjct: 328 LYHNDYPASLENLHCYFDYSAGAEGFDFVQPTSSASNSFGRYEIALLCLGMMHFHFGHPK 387

Query: 240 QALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSPITSIGTTLS 299
           QAL+VLTEAV +SQQ SNDTCLAYTLAAI NLLS IGIS+TT ILGSSY P+TSIGT+LS
Sbjct: 388 QALEVLTEAVRVSQQQSNDTCLAYTLAAICNLLSAIGISSTTEILGSSYGPVTSIGTSLS 447

Query: 300 VQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPT 359
           +QQQLFVLL+ S +RA+ LKLKRLVA+N LAMAKF LTHVQRPLLSFGPK +M+L+TCP 
Sbjct: 448 IQQQLFVLLRRSLKRADGLKLKRLVASNRLAMAKFGLTHVQRPLLSFGPKASMKLKTCPV 507

Query: 360 NVCKELRLASHLISDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQENVSGKDSNAFQ 419
           NVCKELRL+SHLIS+F +ESS M TDG FST+WLKNLQKPMGSLVL+ EN SG +SNAF 
Sbjct: 508 NVCKELRLSSHLISEFSTESSIMITDGVFSTAWLKNLQKPMGSLVLSLENASGANSNAFH 567

Query: 420 FCAQPSSIPGSVLQLVGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAH 479
           FCAQP+SIPGSVLQL+GSSYLLRATAWE YGSAPL R+N L+YATCFS+ SS +D ALA+
Sbjct: 568 FCAQPNSIPGSVLQLLGSSYLLRATAWEIYGSAPLARINALVYATCFSNASSSADVALAY 627

Query: 480 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVC 539
            KLIQHLAVFKG++EAF+ALK+ EEKF S+SKSRILLLKLQLLHER+LH GHLKLAQ+VC
Sbjct: 628 TKLIQHLAVFKGHREAFAALKLVEEKFCSISKSRILLLKLQLLHERALHLGHLKLAQQVC 687

Query: 540 DELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENAS 599
           DELGV+ASSVTGVDM+LKTEASLRHARTLLAANQF +AAAVAHSLFCMCYKFNLQVENA+
Sbjct: 688 DELGVLASSVTGVDMELKTEASLRHARTLLAANQFGQAAAVAHSLFCMCYKFNLQVENAT 747

Query: 600 VLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMA 659
           VLLLLAEIHKKSGNAVLG+PYALASLSFCQ  NLDLLKASATLTLAELWLS G NHA+ A
Sbjct: 748 VLLLLAEIHKKSGNAVLGLPYALASLSFCQSFNLDLLKASATLTLAELWLSLGSNHAERA 807

Query: 660 SNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL 719
           S L+Q ALP+ILGHGGLELR+RA+IAEAKC LS+PSFSV +N E VLDPLRQA+EEL++L
Sbjct: 808 SILVQGALPMILGHGGLELRSRAYIAEAKCYLSNPSFSVFENSEVVLDPLRQATEELEIL 867

Query: 720 EDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALENENRQDEVDPLLS 773
           E HELAAEAFYLIA+VFDKLG+L EREEAAA F ++V ALEN   Q+E DPL +
Sbjct: 868 EYHELAAEAFYLIAMVFDKLGQLEEREEAAASFMKHVKALENP--QNEQDPLFN 919

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255584099|ref|XP_002532792.1| conserved hypothetical protein [Ricinus communis] gi|223527462|gb|EEF29594.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449438945|ref|XP_004137248.1| PREDICTED: anaphase-promoting complex subunit 5-like [Cucumis sativus] gi|449483128|ref|XP_004156500.1| PREDICTED: anaphase-promoting complex subunit 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356553615|ref|XP_003545150.1| PREDICTED: LOW QUALITY PROTEIN: anaphase-promoting complex subunit 5-like [Glycine max] Back     alignment and taxonomy information
>gi|297848940|ref|XP_002892351.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297338193|gb|EFH68610.1| binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30679744|ref|NP_172146.2| anaphase-promoting complex subunit 5 [Arabidopsis thaliana] gi|75151975|sp|Q8H1U4.1|APC5_ARATH RecName: Full=Anaphase-promoting complex subunit 5; AltName: Full=Cyclosome subunit 5 gi|23429520|gb|AAN10197.1| APC5 [Arabidopsis thaliana] gi|332189888|gb|AEE28009.1| anaphase-promoting complex subunit 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|51970874|dbj|BAD44129.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222617516|gb|EEE53648.1| hypothetical protein OsJ_36942 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218187288|gb|EEC69715.1| hypothetical protein OsI_39198 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|108863003|gb|ABA99493.2| expressed protein [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query775
TAIR|locus:2009150916 AT1G06590 [Arabidopsis thalian 0.974 0.824 0.639 2.4e-256
UNIPROTKB|Q9UJX4755 ANAPC5 "Anaphase-promoting com 0.313 0.321 0.273 4.5e-20
UNIPROTKB|Q5RE52755 ANAPC5 "Anaphase-promoting com 0.313 0.321 0.273 4.5e-20
UNIPROTKB|G3V655740 Anapc5 "Anaphase-promoting com 0.278 0.291 0.292 3.7e-19
UNIPROTKB|F1RNP8755 ANAPC5 "Uncharacterized protei 0.313 0.321 0.273 6.3e-19
MGI|MGI:1929722740 Anapc5 "anaphase-promoting com 0.278 0.291 0.292 1.2e-18
UNIPROTKB|E1BK11755 ANAPC5 "Uncharacterized protei 0.313 0.321 0.269 1.3e-18
UNIPROTKB|E2R4S0755 ANAPC5 "Uncharacterized protei 0.419 0.430 0.243 1.4e-18
RGD|1306125727 Anapc5 "anaphase-promoting com 0.187 0.199 0.327 6.8e-18
DICTYBASE|DDB_G0280113 1017 anapc5 "anaphase promoting com 0.134 0.102 0.283 8.1e-11
TAIR|locus:2009150 AT1G06590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2453 (868.6 bits), Expect = 2.4e-256, Sum P(2) = 2.4e-256
 Identities = 487/762 (63%), Positives = 589/762 (77%)

Query:     2 QGVCHLLTSIGIYCKEALSSCSAYELPCLDDSSNELEALSEYENMDLENIVFEKVNKEIE 61
             +GVCHL +SI  YCKEA SS + +  P     +N LE+L +Y+ MD+EN   +K  +EIE
Sbjct:   151 EGVCHLFSSIEDYCKEAHSSFAQFGAP-----NNNLESLIQYDQMDMENYAMDKPTEEIE 205

Query:    62 ARKKASEEVSFHLHAPKALFGLVEDIKVSAVSKSQGGDKCREASPSAHAPNDAMREFDSI 121
              +K AS  V FHLH P +L    E +  +    S+   K  EA+P A A    + E    
Sbjct:   206 FQKTASGIVPFHLHTPDSLMKATEGLLHNRKETSRTSKKDTEATPVARASTSTLEESLVD 265

Query:   122 SGAFLRTNWQMQGYLMEQADAIEKHGSS--FSLNAFELILRQLQKLAPELHRVHFLRYLN 179
                FLRTN Q+QG+LMEQADAIE HGSS  FS ++ E  L QLQKLAPELHRVHFLRYLN
Sbjct:   266 ESLFLRTNLQIQGFLMEQADAIEIHGSSSSFSSSSIESFLDQLQKLAPELHRVHFLRYLN 325

Query:   180 SLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPK 239
              L+ DDYFAAL+NL RYFDYSAGTEGFD   PS GC+ +GRYEI LLCLGMMHF FGHP 
Sbjct:   326 KLHSDDYFAALDNLLRYFDYSAGTEGFDLVPPSTGCSMYGRYEIGLLCLGMMHFRFGHPN 385

Query:   240 QALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSPITSIGTTLS 299
              AL+VLTEAV +SQQ SNDTCLAYTLAA+SNLLSE+GI++T+G+LGSSYSP+TS  ++LS
Sbjct:   386 LALEVLTEAVRVSQQLSNDTCLAYTLAAMSNLLSEMGIASTSGVLGSSYSPVTSTASSLS 445

Query:   300 VQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPT 359
             VQQ++++LLKES RRA+SLKL+RLVA+NHLAMAKF+L HVQRPLLSFGPK +MR +TCP 
Sbjct:   446 VQQRVYILLKESLRRADSLKLRRLVASNHLAMAKFELMHVQRPLLSFGPKASMRHKTCPV 505

Query:   360 NVCKELRLASHLISDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQENVSGKDSNAFQ 419
             +VCKE+RL +HLISDF SESSTMT DG+ S++WLK+LQKP G  V++ ++ S K S  FQ
Sbjct:   506 SVCKEIRLGAHLISDFSSESSTMTIDGSLSSAWLKDLQKPWGPPVISPDSGSRKSSTFFQ 565

Query:   420 FCAQPSSIPGSVLQLVGSSYLLRATAWEAYGSAPLTRVNTLIYATCFXXXXXXXXXXXXH 479
              C    SIPGSV QL+G+SYLLRAT+WE YGSAP+ R+NTL+YAT F            +
Sbjct:   566 LCDHLVSIPGSVSQLIGASYLLRATSWELYGSAPMARMNTLVYATLFGDSSSSSDAELAY 625

Query:   480 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRIXXXXXXXXHERSLHRGHLKLAQKVC 539
             +KLIQHLA++KGYK+AF+ALK+AEEKFL+VSKS++        HER+LH G+LKLAQ++C
Sbjct:   626 LKLIQHLALYKGYKDAFAALKVAEEKFLTVSKSKVLLLKLQLLHERALHCGNLKLAQRIC 685

Query:   540 DELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENAS 599
             +ELG +AS+  GVDM+LK EASLR ARTLLAA Q+S+AA VAHSLFC C+KFNLQ+E AS
Sbjct:   686 NELGGLASTAMGVDMELKVEASLREARTLLAAKQYSQAANVAHSLFCTCHKFNLQIEKAS 745

Query:   600 VLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMA 659
             VLLLLAEIHKKSGNAVLG+PYALAS+SFCQ  NLDLLKASATLTLAELWL  G NH K A
Sbjct:   746 VLLLLAEIHKKSGNAVLGLPYALASISFCQSFNLDLLKASATLTLAELWLGLGSNHTKRA 805

Query:   660 SNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL 719
              +L+  A P+ILGHGGLELRARA+I EA C LSDPS SVS + + VLD LRQAS+ELQ L
Sbjct:   806 LDLLHGAFPMILGHGGLELRARAYIFEANCYLSDPSSSVSTDSDTVLDSLRQASDELQAL 865

Query:   720 EDHELAAEAFYLIAIVFDKLGXXXXXXXXXXXFKEYVLALEN 761
             E HELAAEA YL+A+V+DKLG           FK++++ALEN
Sbjct:   866 EYHELAAEASYLMAMVYDKLGRLDEREEAASLFKKHIIALEN 907
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0007276 "gamete generation" evidence=RCA
GO:0032875 "regulation of DNA endoreduplication" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0043248 "proteasome assembly" evidence=RCA
GO:0051302 "regulation of cell division" evidence=RCA
GO:0051510 "regulation of unidimensional cell growth" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
UNIPROTKB|Q9UJX4 ANAPC5 "Anaphase-promoting complex subunit 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RE52 ANAPC5 "Anaphase-promoting complex subunit 5" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|G3V655 Anapc5 "Anaphase-promoting complex subunit 5 (Predicted)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RNP8 ANAPC5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1929722 Anapc5 "anaphase-promoting complex subunit 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BK11 ANAPC5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R4S0 ANAPC5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1306125 Anapc5 "anaphase-promoting complex subunit 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0280113 anapc5 "anaphase promoting complex subunit 5" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H1U4APC5_ARATHNo assigned EC number0.66920.97410.8242yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018868001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (692 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00016677001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (761 aa)
    ••• 0.589
GSVIVG00027833001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (545 aa)
     •• 0.578
GSVIVG00024912001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (192 aa)
    ••  0.573
GSVIVG00019804001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (560 aa)
    ••  0.562
GSVIVG00036925001
SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (873 aa)
    ••  0.552

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query775
pfam1286291 pfam12862, Apc5, Anaphase-promoting complex subuni 3e-27
>gnl|CDD|193336 pfam12862, Apc5, Anaphase-promoting complex subunit 5 Back     alignment and domain information 
 Score =  105 bits (265), Expect = 3e-27
 Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 12/102 (11%)

Query: 173 HFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMH 232
           H+L YLN+L   DY  AL++LHRYFDYS  +            N    Y+ ALL L  +H
Sbjct: 1   HYLSYLNALRVGDYQGALDSLHRYFDYSLTS------------NEKSSYQYALLNLASLH 48

Query: 233 FHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSE 274
             FGH ++A+  + EA+ L++++ +  CL   L+ + N L +
Sbjct: 49  ADFGHNEEAIAAIEEAIRLARENKDTACLNLALSWLYNFLKK 90

Apc5 is a subunit of the anaphase-promoting complex/cyclosome (APC/C) which is a multisubunit ubiquitin ligase that mediates the proteolysis of cell cycle proteins in mitosis and G1. Apc5, although it does not harbour a classical RNA binding domain, Apc5 binds the poly(A) binding protein (PABP), which directly binds the internal ribosome entry site (IRES) of growth factor 2 mRNA. PABP was found to enhance IRES-mediated translation, whereas Apc5 over-expression counteracted this effect. In addition to its association with the APC/C complex, Apc5 binds much heavier complexes and co-sediments with the ribosomal fraction. The N-terminus of Afi1 serves to stabilise the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC. This region of the Apc5 member proteins carries a TPR-like motif. Length = 91

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 775
KOG4322482 consensus Anaphase-promoting complex (APC), subuni 100.0
PF1286294 Apc5: Anaphase-promoting complex subunit 5 99.86
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 99.68
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 99.62
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.53
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 99.52
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 99.49
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 99.49
TIGR02917 899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 99.44
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 99.44
KOG1941 518 consensus Acetylcholine receptor-associated protei 99.44
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 99.43
PRK04841 903 transcriptional regulator MalT; Provisional 99.38
KOG1941 518 consensus Acetylcholine receptor-associated protei 99.34
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 99.29
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.25
PRK11788389 tetratricopeptide repeat protein; Provisional 99.2
PRK04841 903 transcriptional regulator MalT; Provisional 99.2
PRK11788389 tetratricopeptide repeat protein; Provisional 99.13
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 99.13
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 99.12
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.1
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.06
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 99.03
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 99.01
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 99.0
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 98.97
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 98.89
PRK14574 822 hmsH outer membrane protein; Provisional 98.82
KOG1126638 consensus DNA-binding cell division cycle control 98.8
cd05804355 StaR_like StaR_like; a well-conserved protein foun 98.79
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 98.79
KOG2300629 consensus Uncharacterized conserved protein [Funct 98.75
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 98.74
PRK12370553 invasion protein regulator; Provisional 98.73
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 98.73
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 98.71
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 98.7
cd05804355 StaR_like StaR_like; a well-conserved protein foun 98.7
PRK11189296 lipoprotein NlpI; Provisional 98.67
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 98.67
PRK12370553 invasion protein regulator; Provisional 98.66
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 98.64
PRK10747398 putative protoheme IX biogenesis protein; Provisio 98.62
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 98.6
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 98.59
PRK14574 822 hmsH outer membrane protein; Provisional 98.56
PRK11189296 lipoprotein NlpI; Provisional 98.53
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 98.49
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 98.45
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 98.31
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 98.31
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 98.3
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 98.28
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 98.23
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.21
KOG4322482 consensus Anaphase-promoting complex (APC), subuni 98.2
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 98.17
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 98.15
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 98.14
KOG1129478 consensus TPR repeat-containing protein [General f 98.12
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 98.11
PRK10747398 putative protoheme IX biogenesis protein; Provisio 98.08
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.06
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 98.06
KOG1126638 consensus DNA-binding cell division cycle control 98.06
PLN03218 1060 maturation of RBCL 1; Provisional 97.95
PRK15359144 type III secretion system chaperone protein SscB; 97.95
KOG0547606 consensus Translocase of outer mitochondrial membr 97.94
KOG2003840 consensus TPR repeat-containing protein [General f 97.93
PLN03218 1060 maturation of RBCL 1; Provisional 97.91
KOG1129478 consensus TPR repeat-containing protein [General f 97.91
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 97.91
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 97.9
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 97.9
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 97.86
KOG0624 504 consensus dsRNA-activated protein kinase inhibitor 97.82
PF10345 608 Cohesin_load: Cohesin loading factor; InterPro: IP 97.81
CHL00033168 ycf3 photosystem I assembly protein Ycf3 97.79
KOG0547606 consensus Translocase of outer mitochondrial membr 97.79
PF10345 608 Cohesin_load: Cohesin loading factor; InterPro: IP 97.79
KOG2003 840 consensus TPR repeat-containing protein [General f 97.78
PRK15359144 type III secretion system chaperone protein SscB; 97.77
KOG4162799 consensus Predicted calmodulin-binding protein [Si 97.76
KOG2300629 consensus Uncharacterized conserved protein [Funct 97.74
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 97.71
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 97.69
KOG1586288 consensus Protein required for fusion of vesicles 97.65
KOG2076 895 consensus RNA polymerase III transcription factor 97.64
PLN03077 857 Protein ECB2; Provisional 97.64
PF12688120 TPR_5: Tetratrico peptide repeat 97.63
PLN03077 857 Protein ECB2; Provisional 97.61
PF1286294 Apc5: Anaphase-promoting complex subunit 5 97.57
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 97.57
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 97.55
KOG2076 895 consensus RNA polymerase III transcription factor 97.55
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 97.52
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 97.51
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 97.48
KOG1585308 consensus Protein required for fusion of vesicles 97.47
KOG3060289 consensus Uncharacterized conserved protein [Funct 97.46
KOG0495913 consensus HAT repeat protein [RNA processing and m 97.46
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 97.46
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 97.44
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 97.43
PRK10370198 formate-dependent nitrite reductase complex subuni 97.41
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 97.41
CHL00033168 ycf3 photosystem I assembly protein Ycf3 97.41
PF12688120 TPR_5: Tetratrico peptide repeat 97.4
PRK10370198 formate-dependent nitrite reductase complex subuni 97.39
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 97.29
PRK02603172 photosystem I assembly protein Ycf3; Provisional 97.27
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 97.25
cd00189100 TPR Tetratricopeptide repeat domain; typically con 97.23
TIGR02552135 LcrH_SycD type III secretion low calcium response 97.22
TIGR02552135 LcrH_SycD type III secretion low calcium response 97.2
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 97.16
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 97.16
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 97.16
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 97.13
COG4700251 Uncharacterized protein conserved in bacteria cont 97.1
PRK02603172 photosystem I assembly protein Ycf3; Provisional 97.08
KOG3060289 consensus Uncharacterized conserved protein [Funct 97.04
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 97.03
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 97.02
KOG1585 308 consensus Protein required for fusion of vesicles 97.0
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 96.99
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 96.98
COG4783484 Putative Zn-dependent protease, contains TPR repea 96.97
KOG1586288 consensus Protein required for fusion of vesicles 96.96
KOG4162799 consensus Predicted calmodulin-binding protein [Si 96.94
KOG4555175 consensus TPR repeat-containing protein [Function 96.93
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 96.92
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 96.91
KOG0495913 consensus HAT repeat protein [RNA processing and m 96.9
KOG1125579 consensus TPR repeat-containing protein [General f 96.88
KOG1125579 consensus TPR repeat-containing protein [General f 96.87
KOG4340 459 consensus Uncharacterized conserved protein [Funct 96.86
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 96.85
cd00189100 TPR Tetratricopeptide repeat domain; typically con 96.82
KOG0553304 consensus TPR repeat-containing protein [General f 96.79
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 96.77
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 96.72
PLN02789320 farnesyltranstransferase 96.72
KOG4555175 consensus TPR repeat-containing protein [Function 96.64
KOG0553304 consensus TPR repeat-containing protein [General f 96.62
PRK14720 906 transcript cleavage factor/unknown domain fusion p 96.61
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 96.5
COG4700251 Uncharacterized protein conserved in bacteria cont 96.4
KOG1463 411 consensus 26S proteasome regulatory complex, subun 96.39
PRK14720 906 transcript cleavage factor/unknown domain fusion p 96.38
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 96.37
COG4783484 Putative Zn-dependent protease, contains TPR repea 96.36
COG4105254 ComL DNA uptake lipoprotein [General function pred 96.34
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 96.31
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 96.29
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 96.28
PRK15331165 chaperone protein SicA; Provisional 96.28
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 96.25
PRK10803263 tol-pal system protein YbgF; Provisional 96.25
KOG1463411 consensus 26S proteasome regulatory complex, subun 96.21
PRK10803263 tol-pal system protein YbgF; Provisional 96.21
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 96.19
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 96.17
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 96.13
COG3898 531 Uncharacterized membrane-bound protein [Function u 96.11
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 96.1
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 96.09
PRK10153517 DNA-binding transcriptional activator CadC; Provis 96.0
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 95.99
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 95.99
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 95.96
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 95.89
PF12569517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 95.86
PRK10153517 DNA-binding transcriptional activator CadC; Provis 95.81
PF13512142 TPR_18: Tetratricopeptide repeat 95.67
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 95.64
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 95.48
PF11817247 Foie-gras_1: Foie gras liver health family 1; Inte 95.44
PF12968144 DUF3856: Domain of Unknown Function (DUF3856); Int 95.42
KOG2376 652 consensus Signal recognition particle, subunit Srp 95.41
COG2976207 Uncharacterized protein conserved in bacteria [Fun 95.27
KOG2047 835 consensus mRNA splicing factor [RNA processing and 95.25
PLN02789320 farnesyltranstransferase 95.24
COG5159 421 RPN6 26S proteasome regulatory complex component [ 95.18
COG4105254 ComL DNA uptake lipoprotein [General function pred 95.09
PF1337173 TPR_9: Tetratricopeptide repeat 95.02
KOG4340 459 consensus Uncharacterized conserved protein [Funct 94.99
COG3898 531 Uncharacterized membrane-bound protein [Function u 94.86
PLN03098 453 LPA1 LOW PSII ACCUMULATION1; Provisional 94.71
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 94.64
COG2976207 Uncharacterized protein conserved in bacteria [Fun 94.44
KOG1915677 consensus Cell cycle control protein (crooked neck 94.41
COG5159421 RPN6 26S proteasome regulatory complex component [ 94.33
KOG1128777 consensus Uncharacterized conserved protein, conta 94.32
PF1337173 TPR_9: Tetratricopeptide repeat 94.28
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 94.1
PF08626 1185 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC 94.0
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 93.97
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 93.89
KOG3616 1636 consensus Selective LIM binding factor [Transcript 93.56
KOG2796366 consensus Uncharacterized conserved protein [Funct 93.47
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 93.42
KOG1128777 consensus Uncharacterized conserved protein, conta 93.15
COG3118304 Thioredoxin domain-containing protein [Posttransla 92.78
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 92.7
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 92.69
KOG1464 440 consensus COP9 signalosome, subunit CSN2 [Posttran 92.69
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 92.67
PRK15331165 chaperone protein SicA; Provisional 92.64
PRK11906458 transcriptional regulator; Provisional 92.5
KOG2047 835 consensus mRNA splicing factor [RNA processing and 92.5
COG1729262 Uncharacterized protein conserved in bacteria [Fun 92.45
KOG4234271 consensus TPR repeat-containing protein [General f 92.32
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 92.24
KOG2471 696 consensus TPR repeat-containing protein [General f 92.09
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 92.05
KOG3785 557 consensus Uncharacterized conserved protein [Funct 92.01
COG1729262 Uncharacterized protein conserved in bacteria [Fun 91.96
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 91.83
PF03704146 BTAD: Bacterial transcriptional activator domain; 91.66
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 91.64
PF12739414 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 91.61
COG3118304 Thioredoxin domain-containing protein [Posttransla 91.23
PLN03098453 LPA1 LOW PSII ACCUMULATION1; Provisional 91.21
KOG2581 493 consensus 26S proteasome regulatory complex, subun 91.06
KOG1915677 consensus Cell cycle control protein (crooked neck 91.0
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 90.87
PF08626 1185 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC 90.87
KOG4234271 consensus TPR repeat-containing protein [General f 90.86
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 90.77
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 90.58
PF13512142 TPR_18: Tetratricopeptide repeat 90.55
KOG3785 557 consensus Uncharacterized conserved protein [Funct 90.24
PF03704146 BTAD: Bacterial transcriptional activator domain; 90.07
KOG2610 491 consensus Uncharacterized conserved protein [Funct 89.75
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 89.55
KOG2796366 consensus Uncharacterized conserved protein [Funct 89.52
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 89.17
PF13281374 DUF4071: Domain of unknown function (DUF4071) 89.11
PF04190260 DUF410: Protein of unknown function (DUF410) ; Int 89.01
COG4235287 Cytochrome c biogenesis factor [Posttranslational 88.91
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 88.87
PF12968144 DUF3856: Domain of Unknown Function (DUF3856); Int 88.77
COG0457291 NrfG FOG: TPR repeat [General function prediction 88.74
PRK11906458 transcriptional regulator; Provisional 88.43
TIGR0350444 FimV_Cterm FimV C-terminal domain. This protein is 88.34
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 88.16
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 88.15
COG4649221 Uncharacterized protein conserved in bacteria [Fun 88.15
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 87.35
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 87.26
PF1342844 TPR_14: Tetratricopeptide repeat 87.22
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 87.21
COG4235287 Cytochrome c biogenesis factor [Posttranslational 87.13
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 87.07
KOG18391236 consensus Uncharacterized protein CLU1/cluA/TIF31 87.05
PF09986214 DUF2225: Uncharacterized protein conserved in bact 86.85
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 86.48
PF1057980 Rapsyn_N: Rapsyn N-terminal myristoylation and lin 86.36
PF09986214 DUF2225: Uncharacterized protein conserved in bact 85.97
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 85.59
KOG2610 491 consensus Uncharacterized conserved protein [Funct 84.95
COG5187 412 RPN7 26S proteasome regulatory complex component, 84.91
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 84.9
PF12739414 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 84.79
COG0457291 NrfG FOG: TPR repeat [General function prediction 84.74
KOG2376 652 consensus Signal recognition particle, subunit Srp 84.35
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 84.22
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 83.95
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 83.81
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 83.5
KOG1464 440 consensus COP9 signalosome, subunit CSN2 [Posttran 83.09
KOG0687 393 consensus 26S proteasome regulatory complex, subun 82.73
PF11817247 Foie-gras_1: Foie gras liver health family 1; Inte 82.66
KOG4648 536 consensus Uncharacterized conserved protein, conta 81.34
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 81.05
KOG2041 1189 consensus WD40 repeat protein [General function pr 80.77
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 80.53
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 80.22
PF09670379 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 80.13
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=8.6e-43  Score=371.18  Aligned_cols=459  Identities=24%  Similarity=0.203  Sum_probs=404.1

Q ss_pred             HHHHHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHhCCCchHHHHHHHHHHhhcCCHHHHHHHHHHhhhhhcCCCCCC
Q 004081          129 NWQMQGYLMEQADAIEKHG-SSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFD  207 (775)
Q Consensus       129 ~~~~~~~l~~q~~~l~~~~-~~~~~~~l~~~~~~l~~~~p~~~~~h~l~yl~~~~~~dy~~A~d~LhryFD~~~~~~~~d  207 (775)
                      ++|++.|+..|..+++.++ ++.+|-++|+-++.+.+..|++. +||+.|+|.+|+.||.+++.+|+++||.+...    
T Consensus        18 ~kqa~fF~~~q~~ll~n~elkal~p~~lqk~v~~ll~vlp~~~-p~~l~y~n~lrv~d~~s~l~sL~e~~dr~~l~----   92 (482)
T KOG4322|consen   18 NKQATFFTPHQLTLLLNIELKALRPIQLQKCVPFLDLVLPYFN-PNDLQYQNLLRVHDITSHLPSLIEEYDRYSLL----   92 (482)
T ss_pred             chhhhhccHHHHHHHHhhhhhccCchhhhcCchHHHHhccccC-hhhhccchhhHHHHHHhhhhHHHHHHHhhhhh----
Confidence            8999999999999999999 89999999999999999999999 99999999999999999999999999998532    


Q ss_pred             CCCCCCCCCCcchhhhHHhhHHHHHHhhCChHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhhhhhhccccccccCCCC
Q 004081          208 FAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSS  287 (775)
Q Consensus       208 r~~~~~~~~~~~~~qyAlLnlA~lh~~FG~~~~A~~al~EAi~~Aqe~~D~~cL~~al~wl~~l~~~~g~~~~~~~~g~~  287 (775)
                                ..+| |++.|+|.+|..|||    ..++.|+|+.|||.+|+.|++.|..|.+.+-.+.+.          
T Consensus        93 ----------eegy-y~~~nla~Lhe~fgh----l~al~eai~~aqe~~dh~~l~~~~~w~i~Lr~~~~~----------  147 (482)
T KOG4322|consen   93 ----------EEGY-YSLHNLADLHEIFGH----LGALIEGIYDAQEEADHMLLSSSSLWSIFLRKCVVE----------  147 (482)
T ss_pred             ----------hhhH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHccchhhHhccchHHHHHHhhhhh----------
Confidence                      1246 999999999999999    889999999999999999999999998877655432          


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhccCCccccCCCcccccccCCchhHHHHHHh
Q 004081          288 YSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRL  367 (775)
Q Consensus       288 ~~~~~~~~~~~~~q~q~l~~L~~~~~ra~el~l~~L~s~~~l~~ak~~l~~g~~p~~~~g~~~~~~~~~~pa~v~e~l~~  367 (775)
                                         ..+.+++++-+                                                  
T Consensus       148 -------------------seq~Sv~~a~~--------------------------------------------------  158 (482)
T KOG4322|consen  148 -------------------SEQFSVEQAVQ--------------------------------------------------  158 (482)
T ss_pred             -------------------HHHHHHHHhhh--------------------------------------------------
Confidence                               12333434333                                                  


Q ss_pred             hcccccccccccccccCCCcchHHHHhhhccCCCcchhhhcccCCCCccccccccCCCCCchhhHhhhhHHHHHHHHHHH
Q 004081          368 ASHLISDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWE  447 (775)
Q Consensus       368 ~~~l~sd~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~g~~~~l~aalW~  447 (775)
                                          |...||++.+.+++-.                              ..+      -.+|+
T Consensus       159 --------------------f~~s~Lq~~~~~~~fq------------------------------~~a------~~~W~  182 (482)
T KOG4322|consen  159 --------------------FFKSFLQYRAPSMDFQ------------------------------HEA------IEFWK  182 (482)
T ss_pred             --------------------hhHHHHHhhccccCcc------------------------------hhh------hHHHH
Confidence                                2233455555433211                              011      12999


Q ss_pred             HhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCc-hHHHHHH-HhhHHHH
Q 004081          448 AYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK-SRILLLK-LQLLHER  525 (775)
Q Consensus       448 ~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~-~~~~~l~-l~l~~~~  525 (775)
                      .||...|+..           .++......+++.+|..++.+|-...+...|++ +++||.... ...|++. ....++.
T Consensus       183 lYGrhemA~~-----------~s~~~llq~al~s~a~~~a~qg~~ql~~v~L~h-Kqrfp~~~~~a~~wml~d~~~v~~~  250 (482)
T KOG4322|consen  183 IYGRHELANL-----------ASNKTLLQLALGSIAVSRSSQGIEQLTQVQLEH-KQRFPCALPLAMKWMLHDLLEVEEN  250 (482)
T ss_pred             HhchhHHHHh-----------hcchhHHHHHHHHHHHHHHhcchHHHHHHHHHH-HHhcCCCcHHHHHHHHHHhHHHHHh
Confidence            9999999983           234557789999999999999999999999999 999998887 4588886 4455688


Q ss_pred             HHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 004081          526 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA  605 (775)
Q Consensus       526 al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA  605 (775)
                      .+..++|..|...+...          |.....+..++.+.++.+..+++.|.++++.++..|.........+.|++.+|
T Consensus       251 ~~~~~~~h~al~~~~g~----------d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~a  320 (482)
T KOG4322|consen  251 NLNTSYYHKALNSWFGG----------DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIA  320 (482)
T ss_pred             hhhhhHHHHHHHHhhcc----------hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            99999999998655543          66668899999999999999999999999999999999888999999999999


Q ss_pred             HHHHhcCChhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHH
Q 004081          606 EIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIA  685 (775)
Q Consensus       606 ~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~  685 (775)
                      .++.+.|.+..+++++.+++..+.+..+++.++.+.+.|+..|+.+|.+  ++|+.++..++|.|+.+|..+++|++++.
T Consensus       321 e~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~p--k~Al~lLh~a~h~Il~~GgL~drara~fv  398 (482)
T KOG4322|consen  321 EARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSP--KAALPLLHTAVHLILVQGGLDDRARAIFV  398 (482)
T ss_pred             HHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCCh--HHHHHHHHhhhhHHHhccchhhcceeEEE
Confidence            9999999999999999999999999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhccCCCC
Q 004081          686 EAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALENENRQ  765 (775)
Q Consensus       686 LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~f~ql~~~~~~~~~~  765 (775)
                      .++|+++.+.....++.+.+.+++++|...|.+++++.+..+|.|.+|..|+.+||.++||++|..||++.+.+++  |+
T Consensus       399 fanC~lA~a~s~~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~le~--pr  476 (482)
T KOG4322|consen  399 FANCTLAFALSCANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYLEL--PR  476 (482)
T ss_pred             EEeeeecchhhhhhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCC--cc
Confidence            9999999887767888999999999999999999999999999999999999999999999999999999999997  65


Q ss_pred             CCC
Q 004081          766 DEV  768 (775)
Q Consensus       766 ~~~  768 (775)
                      .-.
T Consensus       477 ~~l  479 (482)
T KOG4322|consen  477 WLL  479 (482)
T ss_pred             ccc
Confidence            443

>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] Back     alignment and domain information
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>TIGR03504 FimV_Cterm FimV C-terminal domain Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query775
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 5e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 66.4 bits (161), Expect = 2e-11
 Identities = 86/572 (15%), Positives = 177/572 (30%), Gaps = 176/572 (30%)

Query: 30  LDDSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKV 89
           +D  + E +    Y+  D+ ++  +      + +                    V+D+  
Sbjct: 7   MDFETGEHQ----YQYKDILSVFEDAFVDNFDCKD-------------------VQDMPK 43

Query: 90  SAVSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKH-GS 148
           S +SK +          S  A +  +R F ++              L +Q + ++K    
Sbjct: 44  SILSKEE----IDHIIMSKDAVSGTLRLFWTL--------------LSKQEEMVQKFVEE 85

Query: 149 SFSLNAFELILRQLQK--LAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGF 206
              +N ++ ++  ++     P +    ++   + LY+D+   A  N+ R   Y    +  
Sbjct: 86  VLRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 207 DFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLA 266
              +P+          + +   G+     G  K     +   VC    +     + + + 
Sbjct: 145 LELRPAKN--------VLID--GV----LGSGKT---WVALDVC--LSYKVQCKMDFKIF 185

Query: 267 AISNLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESF-----------RRA 315
            ++              L +  SP     T L + Q+L   +  ++            R 
Sbjct: 186 WLN--------------LKNCNSP----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 316 ESLK--LKRLVAANHLAMAKFDLTHVQRP--LLSFGPKTAMRLRTCPTNVCKEL---RLA 368
            S++  L+RL+ +         L +VQ      +F               CK L   R  
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS------------CKILLTTRFK 275

Query: 369 SHLISDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQ----- 423
              ++DF+S ++T             ++     S+ LT +              +     
Sbjct: 276 Q--VTDFLSAATT------------THISLDHHSMTLTPDE-------VKSLLLKYLDCR 314

Query: 424 PSSIPGSVLQ-------LVGSS---YLLRATAWEAYGSAPLTR-----VNTL---IYATC 465
           P  +P  VL        ++  S    L     W+      LT      +N L    Y   
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 466 FSDGSSLSDAALAHVKL-IQHLAVFKGYKEAFSALKIAEE--KFLSVSK----------S 512
           F   S           +    L++          + +  +  K+  V K          S
Sbjct: 375 FDRLSVFPP----SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 513 RILLLKLQLLHERSLHR---GHLKLAQKVCDE 541
             L LK++L +E +LHR    H  + +    +
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query775
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.87
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.86
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.85
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.85
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.82
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.82
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.8
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 99.76
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.74
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 99.73
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.73
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 99.7
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.67
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.65
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 99.63
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 99.63
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 99.63
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.62
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.6
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 99.58
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.57
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 99.56
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 99.54
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 99.54
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 99.53
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.53
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 99.52
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 99.51
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 99.5
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.5
2gw1_A514 Mitochondrial precursor proteins import receptor; 99.5
2gw1_A514 Mitochondrial precursor proteins import receptor; 99.49
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.47
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.46
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 99.45
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.45
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 99.44
3u4t_A272 TPR repeat-containing protein; structural genomics 99.43
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.43
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 99.42
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 99.41
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.4
3u3w_A293 Transcriptional activator PLCR protein; ternary co 99.4
4b4t_Q 434 26S proteasome regulatory subunit RPN6; hydrolase, 99.4
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 99.37
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.37
3u3w_A293 Transcriptional activator PLCR protein; ternary co 99.36
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 99.34
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.33
4b4t_Q 434 26S proteasome regulatory subunit RPN6; hydrolase, 99.32
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.3
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.29
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.28
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.25
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.22
4g1t_A472 Interferon-induced protein with tetratricopeptide 99.22
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.2
3u4t_A272 TPR repeat-containing protein; structural genomics 99.19
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.19
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.18
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.14
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.1
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.09
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.08
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.07
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.06
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.06
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.02
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.02
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.01
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.0
4g1t_A 472 Interferon-induced protein with tetratricopeptide 99.0
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 98.99
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 98.97
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 98.95
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 98.95
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 98.95
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 98.92
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 98.91
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 98.9
4i17_A228 Hypothetical protein; TPR repeats protein, structu 98.87
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 98.86
4i17_A228 Hypothetical protein; TPR repeats protein, structu 98.85
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 98.82
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 98.8
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 98.76
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 98.75
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 98.71
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 98.71
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 98.69
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 98.65
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 98.64
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 98.62
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 98.58
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 98.57
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 98.56
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 98.54
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 98.49
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 98.49
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 98.48
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 98.47
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 98.46
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 98.43
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 98.43
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 98.42
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 98.41
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 98.39
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 98.39
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 98.38
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 98.37
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 98.36
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 98.36
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 98.35
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 98.35
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 98.35
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 98.29
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 98.27
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 98.24
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 98.23
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 98.23
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 98.22
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 98.2
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 98.19
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 98.17
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 98.17
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 98.14
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 98.1
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 98.08
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 98.07
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 98.06
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 98.06
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 98.06
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 98.05
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 98.02
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 98.01
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 98.01
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 98.0
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 97.99
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 97.99
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 97.98
3qww_A433 SET and MYND domain-containing protein 2; methyltr 97.95
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 97.95
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 97.94
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 97.92
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 97.9
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 97.9
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 97.88
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 97.88
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 97.88
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 97.87
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 97.86
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 97.82
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 97.8
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 97.8
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 97.8
3q49_B137 STIP1 homology and U box-containing protein 1; E3 97.78
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 97.78
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 97.76
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 97.76
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 97.75
3q49_B137 STIP1 homology and U box-containing protein 1; E3 97.75
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 97.74
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 97.74
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 97.73
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 97.73
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 97.72
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 97.72
3txn_A 394 26S proteasome regulatory complex subunit P42B; PC 97.71
2l6j_A111 TPR repeat-containing protein associated with HSP; 97.68
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 97.67
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 97.65
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 97.62
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 97.62
3qww_A433 SET and MYND domain-containing protein 2; methyltr 97.61
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 97.6
3k9i_A117 BH0479 protein; putative protein binding protein, 97.6
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 97.59
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 97.54
2kat_A115 Uncharacterized protein; NESG, structure, structur 97.48
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 97.48
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 97.44
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 97.42
3k9i_A117 BH0479 protein; putative protein binding protein, 97.4
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 97.4
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 97.37
2l6j_A111 TPR repeat-containing protein associated with HSP; 97.36
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 97.34
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 97.32
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 97.24
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 97.1
2kat_A115 Uncharacterized protein; NESG, structure, structur 97.02
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 97.02
4b4t_P 445 26S proteasome regulatory subunit RPN5; hydrolase, 96.94
1b89_A 449 Protein (clathrin heavy chain); triskelion, coated 96.94
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 96.89
1klx_A138 Cysteine rich protein B; structural genomics, heli 96.79
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 96.71
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 96.61
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 96.48
1klx_A138 Cysteine rich protein B; structural genomics, heli 96.43
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 96.39
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 96.21
1b89_A 449 Protein (clathrin heavy chain); triskelion, coated 96.13
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 95.95
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 95.75
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 95.75
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 95.69
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 95.62
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 95.54
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 95.43
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 95.32
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 94.8
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 94.72
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 94.02
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 93.93
4b4t_R 429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 93.78
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 93.55
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 93.39
2wpv_A312 GET4, UPF0363 protein YOR164C; golgi-ER traffickin 93.23
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 93.08
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 92.91
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 92.89
1pc2_A152 Mitochondria fission protein; unknown function; NM 92.87
4b4t_S 523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 92.72
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 92.6
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 92.31
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 91.14
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 91.12
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 90.62
1pc2_A152 Mitochondria fission protein; unknown function; NM 86.35
2wpv_A312 GET4, UPF0363 protein YOR164C; golgi-ER traffickin 86.17
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 85.65
3lpz_A336 GET4 (YOR164C homolog); protein targeting, tail-an 84.45
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 81.97
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 81.55
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 80.92
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 80.91
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 80.08
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
Probab=99.87  E-value=1e-18  Score=189.33  Aligned_cols=261  Identities=14%  Similarity=0.041  Sum_probs=237.2

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHHHHHHHhhHHHHHHhcCC--------------------HH
Q 004081          474 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGH--------------------LK  533 (775)
Q Consensus       474 ~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~--------------------~~  533 (775)
                      ..+.++.++|..+...|+|++|...++.+.+.++..++.......+......+...|+                    +.
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            3456678899999999999999999999999998877654222222111247788999                    99


Q ss_pred             HHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhcCC
Q 004081          534 LAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN  613 (775)
Q Consensus       534 ~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~~~~a~aLl~lA~i~~~~G~  613 (775)
                      +|...+.+++.+....+  ++.....++..++.++...|++++|++.+++++..+...++....+.++..+|.++...|+
T Consensus       165 ~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  242 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  242 (406)
T ss_dssp             HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            99999999999888766  7777888999999999999999999999999999999988888899999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhcCCHHHHHHHHHHHHHhhhcC
Q 004081          614 AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD  693 (775)
Q Consensus       614 ~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~G~~~l~A~a~~~LAr~~lA~  693 (775)
                      +++|+..+.+++.+....+++...+.+...+|.++...|+.  ++|...+++++......++....+.++..+|.++.. 
T Consensus       243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-  319 (406)
T 3sf4_A          243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY--EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA-  319 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-
Confidence            99999999999999999999999999999999999999998  999999999999999999999999999999999999 


Q ss_pred             CCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHH
Q 004081          694 PSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAE  744 (775)
Q Consensus       694 ~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~  744 (775)
                           .|++.+|+.++++|++.+..+++.....+++..+|.++..+|+...
T Consensus       320 -----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          320 -----LGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             -----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             -----cCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence                 9999999999999999999999999999999999999999998743
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query775
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.62
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 99.59
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.56
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.36
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 99.35
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.26
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.21
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 98.98
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 98.61
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 98.55
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 98.48
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 98.42
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 98.41
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 98.21
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 98.17
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 98.16
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 98.01
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 97.94
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 97.9
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 97.89
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 97.88
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 97.88
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 97.87
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 97.85
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 97.84
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 97.84
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 97.69
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 97.69
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 97.68
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 97.59
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 97.59
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 97.58
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 97.56
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 97.53
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 97.43
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 97.41
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 97.35
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 97.34
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 97.33
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 97.25
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 97.23
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 97.08
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 97.0
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 96.83
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 96.76
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 96.4
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 96.38
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 96.29
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 96.21
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 96.14
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 95.14
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 93.31
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 91.58
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 89.96
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 88.7
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 86.67
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.3e-12  Score=134.32  Aligned_cols=305  Identities=12%  Similarity=0.016  Sum_probs=244.5

Q ss_pred             hhHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhcCchHH
Q 004081          435 VGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI  514 (775)
Q Consensus       435 ~g~~~~l~aalW~~~G~~~La~l~~~i~~~~~~~~a~~e~~a~al~~LA~~la~~G~y~eAl~~L~~a~~~f~~~~~~~~  514 (775)
                      -+....+++.+.-.-|...-+.-...-.+.. .+..+....+.++..+|..+...|+|++|...++++.+..+..++...
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~-~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEE-LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            3445667788877888877765543222322 223333456778999999999999999999999999999888776543


Q ss_pred             HHHHHhhHHHHHHhcCCHHHHHHHHHHHhhhhhcCCCCChhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcccc
Q 004081          515 LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ  594 (775)
Q Consensus       515 ~~l~l~l~~~~al~~G~~~~A~~~l~~ll~L~~~~~~~D~~~~~~a~~~~a~ll~~~Gd~~eAl~~l~~aL~~~~~~gd~  594 (775)
                      ...........+...|++..|...+.+++.+..............+...++.++...|+++.|...+..++......+. 
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~-  168 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP-  168 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh-
Confidence            3322211125788999999999999999998776655555556677888999999999999999999999987766544 


Q ss_pred             hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhc
Q 004081          595 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD-LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH  673 (775)
Q Consensus       595 ~~~a~aLl~lA~i~~~~G~~~~Al~~l~~AL~la~~~g~~-~~~A~al~~La~l~l~lG~~~f~~Al~lLe~aLp~il~~  673 (775)
                      .....++...+.++...|.+..+...+.++..+....+.. ...+.+...++.++...|..  ++|...++.++......
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~~~~~  246 (366)
T d1hz4a_         169 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK--AAAANWLRHTAKPEFAN  246 (366)
T ss_dssp             GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHSCCCCCTT
T ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHhcccc
Confidence            4457788999999999999999999999999998776664 44566777789999999998  99999999998765443


Q ss_pred             CCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004081          674 GGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAAL  751 (775)
Q Consensus       674 G~~~l~A~a~~~LAr~~lA~~~~~~~g~~~~Al~~L~~Al~~f~~l~~~~~~~evl~~LA~l~~~lGd~~~A~~aAa~  751 (775)
                      .  ......+..+|.++..      .|++.+|+.++++|+..++..+......+++..+|.+|...|+.++|.++...
T Consensus       247 ~--~~~~~~~~~la~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  316 (366)
T d1hz4a_         247 N--HFLQGQWRNIARAQIL------LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD  316 (366)
T ss_dssp             C--GGGHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             c--hHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3  3555677889999999      99999999999999999999999999999999999999999999999774433
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure