Citrus Sinensis ID: 004093

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770----
MASSSVEPESEENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGISPSTTATGASSALNALSNPMVATGGGGIMNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDIPTGQMGKSPTTYPTPIPTGAARSASGISGSNKSHPTPSGSSLKQSKDKQSLKRKDIGQDDDETTTVQSQPQPRDFFRIRQMKKARGAASSQTGSASYGSAVSGDLSGSTG
cccccccHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHcccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccc
cccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccEEHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccc
masssvepeseenitgvadkynVETAEILANSalhlpvaqaapIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEkkgtegqeETRKAFDFMLShvgsdissgpiWLEYITFLKslpalnaqEESQRMIAIRKAYQRavvtpthhVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIdwnmlavpptgsykEEQQWIAWKRLLTfekgnpqridtassnKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDarkspnftYHVYVAYALMAFcqdkdpklaHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERAlsslppeesIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYsfmdlwpcsskdldHLVRQEWLVKNINKKVdksalsngpgivdkgpsgltsnsttsatviypdtsqmviydprqkpgigispsttatgASSALnalsnpmvatggggimnpfdEMLKAASPAIFAFLanlpavegptpnvDIVLSIClqsdiptgqmgkspttyptpiptgaarsasgisgsnkshptpsgsslkqskdkqslkrkdigqdddetttvqsqpqprdFFRIRQMKKArgaassqtgsasygsavsgdlsgstg
masssvepeseenitgVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYekkgtegqeETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLtfekgnpqridtassnkrIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFldarkspnFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFEralsslppeesIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALsrtgeegasaleDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINkkvdksalsngpgivdkgpsgltsnsttSATVIYPDTSQMVIYDPRQKPGIGISPSTTATGASSALNALSNPMVATGGGGIMNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDIPTGQMGKSPTTYPTPIPTGAARsasgisgsnkshptpsgsslkqskdkqslkrkdigqdddetttvqsqpqprdfFRIRQMKKARgaassqtgsasygsavsgdlsgstg
MASSSVEPESEENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGIspsttatgassalnalsnpMVATGGGGIMNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDIPTGQMGKSPTTYPTPIPTgaarsasgisgsNKSHPTPsgsslkqskdkqslkrkdIGQDDDETTTVQSQPQPRDFFRIRQMKKARGAASSQTGSASYGSAVSGDLSGSTG
***************GVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKK********RKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDL*****************************QDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKK*****************************VIYPDTSQMVIY******************************VATGGGGIMNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDI**************************************************************************************************************
********E*EENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE*****************QDVVSRYSFMDLWPCSSK**********************************************************************************************************AASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDIP***********************************************************************RDFFR*********************************
*************ITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKV*******************EDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGISPSTTATGASSALNALSNPMVATGGGGIMNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDIPTGQMGKSPTTYPTPIPTGA*************************************************PQPRDFFRIRQ******************************
****SVEPESEENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNIN************************************TSQMVIYDPRQKPGIGISPSTTATGAS***NALSNPMVATGGGGIMNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDIPTGQM*********PI****************************************************QPQPRDFFRIRQMKKAR*************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MASSSVEPESEENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGISPSTTATGASSALNALSNPMVATGGGGIMNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDIPTGQMGKSPTTYPTPIPTGAARSASGISGSNKSHPTPSGSSLKQSKDKQSLKRKDIGQDDDETTTVQSQPQPRDFFRIRQMKKARGAASSQTGSASYGSAVSGDLSGSTG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query774 2.2.26 [Sep-21-2011]
Q12996717 Cleavage stimulation fact yes no 0.859 0.927 0.335 1e-109
Q99LI7717 Cleavage stimulation fact yes no 0.859 0.927 0.335 1e-109
Q5RDW9717 Cleavage stimulation fact yes no 0.859 0.927 0.333 1e-109
P25991765 Protein suppressor of for yes no 0.870 0.881 0.309 1e-101
O14233733 mRNA 3'-end-processing pr yes no 0.564 0.596 0.307 1e-71
Q6C8L8806 mRNA 3'-end-processing pr yes no 0.558 0.535 0.316 1e-62
P0CO121064 mRNA 3'-end-processing pr yes no 0.540 0.392 0.277 2e-48
P0CO131064 mRNA 3'-end-processing pr N/A no 0.540 0.392 0.277 2e-48
Q4PCV8945 mRNA 3'-end-processing pr N/A no 0.387 0.317 0.306 7e-40
P25298677 mRNA 3'-end-processing pr yes no 0.562 0.642 0.246 1e-36
>sp|Q12996|CSTF3_HUMAN Cleavage stimulation factor subunit 3 OS=Homo sapiens GN=CSTF3 PE=1 SV=1 Back     alignment and function desciption
 Score =  396 bits (1018), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 252/752 (33%), Positives = 377/752 (50%), Gaps = 87/752 (11%)

Query: 21  YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATK 80
           Y+++   IL   A + P+ +A   YE+L++ FP++     +FWK Y+EA +   N D  +
Sbjct: 30  YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVE 85

Query: 81  QLFSRCLLICLQVPLWRCYIRFIRKVYEKKGT--EGQEETRKAFDFMLSHVGSDISSGPI 138
           +LF RCL+  L + LW+CY+ ++R   E KG     +E+  +A+DF L  +G +I S  I
Sbjct: 86  KLFQRCLMKVLHIDLWKCYLSYVR---ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQI 142

Query: 139 WLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLA 198
           W++YI FLK + A+ +  E+QR+ A+R+ YQR  V P  ++EQLW+DY  +E  ++  LA
Sbjct: 143 WVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLA 202

Query: 199 KGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGN 258
           K ++ +    Y +AR V +E +   + +D N  +VPP  + +E QQ   WK+ + +EK N
Sbjct: 203 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 262

Query: 259 PQRI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI--------------D 303
           P R  D     KR++F YEQCL+ L H+PDIWY+ A +  +S  +              D
Sbjct: 263 PLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 322

Query: 304 AAIKVFQRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 362
            A  +++RA+  L    ML Y A+A+ EESR        +Y  LL        L +IQ++
Sbjct: 323 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYM 382

Query: 363 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 422
           +F RR EG+++ R  F  AR+     +HVYV  ALM +   KD  +A  +FE GLK++  
Sbjct: 383 KFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD 442

Query: 423 EPAYILEYADFLSRLNDDRNIRALFERALS--SLPPEESIEVWKRFTQFEQMYGDLDSTL 480
            P Y+L Y D+LS LN+D N R LFER L+  SLPPE+S E+W RF  FE   GDL S L
Sbjct: 443 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 502

Query: 481 KVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINK 540
           KVE+RR  A     E   +AL      +V RY FMDL+PCS+ +L  L       K+++ 
Sbjct: 503 KVEKRRFTAFKEEYEGKETAL------LVDRYKFMDLYPCSASELKALG-----YKDVS- 550

Query: 541 KVDKSALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGISPSTTATG 600
           +   +A+   P +       L            PDT QM+ + PR     G+ P      
Sbjct: 551 RAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGLHPVP---- 606

Query: 601 ASSALNALSNPMVATGGGGIMNPFDEMLKAASPAIFAFLANLP---AVEGPTPNVDIVLS 657
                            GG+            PA    +  LP     +GP   VD ++ 
Sbjct: 607 -----------------GGVF--------PVPPAAVVLMKLLPPPICFQGPFVQVDELME 641

Query: 658 ICLQSDIPTGQMGKSPTTYPTPIPTGAARSASGISGSNKSHPTPSGSSLKQSKDKQSLKR 717
           I  +  IP              I TG A   + + G+    P  S + L      +++KR
Sbjct: 642 IFRRCKIPNT------VEEAVRIITGGAPELA-VEGNG---PVESNAVL-----TKAVKR 686

Query: 718 KDIGQDDDETTTVQSQPQPRDFFRIRQMKKAR 749
            +   D+DE       P   D +R RQ K+ R
Sbjct: 687 PNEDSDEDEEKGAVVPPV-HDIYRARQQKRIR 717
One of the multiple factors required for polyadenylation and 3'-end cleavage of mammalian pre-mRNAs.
Homo sapiens (taxid: 9606)
>sp|Q99LI7|CSTF3_MOUSE Cleavage stimulation factor subunit 3 OS=Mus musculus GN=Cstf3 PE=1 SV=1 Back     alignment and function description
>sp|Q5RDW9|CSTF3_PONAB Cleavage stimulation factor subunit 3 OS=Pongo abelii GN=CSTF3 PE=2 SV=1 Back     alignment and function description
>sp|P25991|SUF_DROME Protein suppressor of forked OS=Drosophila melanogaster GN=su(f) PE=1 SV=2 Back     alignment and function description
>sp|O14233|RNA14_SCHPO mRNA 3'-end-processing protein rna14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rna14 PE=3 SV=1 Back     alignment and function description
>sp|Q6C8L8|RNA14_YARLI mRNA 3'-end-processing protein RNA14 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RNA14 PE=3 SV=1 Back     alignment and function description
>sp|P0CO12|RNA14_CRYNJ mRNA 3'-end-processing protein RNA14 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RNA14 PE=3 SV=1 Back     alignment and function description
>sp|P0CO13|RNA14_CRYNB mRNA 3'-end-processing protein RNA14 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RNA14 PE=3 SV=1 Back     alignment and function description
>sp|Q4PCV8|RNA14_USTMA mRNA 3'-end-processing protein RNA14 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=RNA14 PE=3 SV=1 Back     alignment and function description
>sp|P25298|RNA14_YEAST mRNA 3'-end-processing protein RNA14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNA14 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query774
255556727767 plant RNA cleavage stimulation factor, p 0.981 0.990 0.771 0.0
225445638769 PREDICTED: cleavage stimulation factor s 0.988 0.994 0.748 0.0
224071487769 predicted protein [Populus trichocarpa] 0.958 0.964 0.770 0.0
356573857832 PREDICTED: cleavage stimulation factor s 0.965 0.897 0.729 0.0
449453884871 PREDICTED: cleavage stimulation factor s 0.959 0.853 0.726 0.0
357497263737 mRNA 3'-end-processing protein rna14 [Me 0.930 0.976 0.703 0.0
297850170734 cleavage stimulation factor 77 [Arabidop 0.943 0.994 0.682 0.0
22329636734 tetratricopeptide repeat-containing prot 0.943 0.994 0.673 0.0
21591637734 cleavage stimulation factor 77 [Arabidop 0.943 0.994 0.673 0.0
115489202731 Os12g0571900 [Oryza sativa Japonica Grou 0.930 0.984 0.624 0.0
>gi|255556727|ref|XP_002519397.1| plant RNA cleavage stimulation factor, putative [Ricinus communis] gi|223541464|gb|EEF43014.1| plant RNA cleavage stimulation factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1234 bits (3192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/773 (77%), Positives = 663/773 (85%), Gaps = 13/773 (1%)

Query: 2   ASSSVEPESEENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAK 61
            +++ + ++ +    V DKYNVE A++LANSA HLP+ QAAPIYEQLLS+FPTA    AK
Sbjct: 6   GANATKDQTTDAAAAVVDKYNVEAADVLANSAQHLPITQAAPIYEQLLSLFPTA----AK 61

Query: 62  FWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKA 121
           FWKQYVEAYMAVNNDDAT+Q+FSRCLL CLQVPLWRCYIRFIRKV ++KG EGQEETRKA
Sbjct: 62  FWKQYVEAYMAVNNDDATRQIFSRCLLNCLQVPLWRCYIRFIRKVNDRKGVEGQEETRKA 121

Query: 122 FDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQ 181
           FDFML +VG+DI++GP+W+EYITFLKSLPALNAQEESQRM A+RK YQ+A+VTPTHHVEQ
Sbjct: 122 FDFMLGYVGADIAAGPVWMEYITFLKSLPALNAQEESQRMTAVRKVYQKAIVTPTHHVEQ 181

Query: 182 LWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKE 241
           LWKDYENFENSVSRQLAKGL+SEYQ KY SARAVYRERKKY ++IDWN+LAVPPTGSYKE
Sbjct: 182 LWKDYENFENSVSRQLAKGLISEYQPKYNSARAVYRERKKYVDDIDWNLLAVPPTGSYKE 241

Query: 242 EQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGS 301
           E QW+AWKR L FEKGNPQRID+ SSNKRIIFTYEQCLMYLYHYPDIWYDYATW+AK GS
Sbjct: 242 ELQWMAWKRFLAFEKGNPQRIDSVSSNKRIIFTYEQCLMYLYHYPDIWYDYATWHAKGGS 301

Query: 302 IDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQF 361
           IDAAIKVFQRALKALPDSEML+YA+AELEESRGAI  AKK+YE+LL D VN TALAHIQF
Sbjct: 302 IDAAIKVFQRALKALPDSEMLKYAYAELEESRGAIQPAKKIYETLLGDGVNATALAHIQF 361

Query: 362 IRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM 421
           IRFLRR EGVEAARKYFLDARKSPN TYHVYVAYALMAFC DKDPK+AHNVFEAGLKRFM
Sbjct: 362 IRFLRRNEGVEAARKYFLDARKSPNCTYHVYVAYALMAFCLDKDPKMAHNVFEAGLKRFM 421

Query: 422 HEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLK 481
           HEP YILEYADFLSRLNDD+NIRALFERALSSLPPEES+EVWKRFTQFEQ YGDL S LK
Sbjct: 422 HEPVYILEYADFLSRLNDDKNIRALFERALSSLPPEESVEVWKRFTQFEQTYGDLASMLK 481

Query: 482 VEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKK 541
           VEQRRKEALSRTGE+GASALE SLQDV SRYSFMDLWPCSSKDLDHL RQEWL KNI+KK
Sbjct: 482 VEQRRKEALSRTGEDGASALEGSLQDVASRYSFMDLWPCSSKDLDHLARQEWLAKNISKK 541

Query: 542 VDKSALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGISPSTTATGA 601
           ++KS +SNG GI+D+  +GL SNS  SA VIYPDTS M IY+PRQK  +GIS STTATG 
Sbjct: 542 MEKSTISNGLGILDRVSTGLKSNSAVSAKVIYPDTSSMAIYEPRQKHEVGISLSTTATGF 601

Query: 602 SSALNALSNPMVATGGGGIMNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICLQ 661
            SA N  SN +V   G G  N FDE+LKA  PA+ +FL+ LP VEGPTPNVDIVLSICLQ
Sbjct: 602 GSASNPSSNTIVGLVGSG-ANAFDEILKATPPALISFLSTLPTVEGPTPNVDIVLSICLQ 660

Query: 662 SDIPTGQMGKSPTTYPTPIPTGAARSASGISGSNKSHPTPSGSSLKQSKDKQSLKRKDIG 721
           S++  GQMGK  T+    +P   A + S +SGS+KS P      LK S+D+QS KRKDI 
Sbjct: 661 SELTNGQMGKLGTS--PAVPAPPAPATSDLSGSSKSRPV-----LKPSRDRQSGKRKDIE 713

Query: 722 -QDDDETTTVQSQPQPRDFFRIRQMKKARGAASSQTGSASYGSAVSGDLSGST 773
            Q++DET TVQSQP PRD FRIR  +KAR   +SQTGSASYGSA+SGDLSGST
Sbjct: 714 RQEEDETATVQSQPLPRDIFRIRHSQKARVGTASQTGSASYGSALSGDLSGST 766

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225445638|ref|XP_002265193.1| PREDICTED: cleavage stimulation factor subunit 3 [Vitis vinifera] gi|297736046|emb|CBI24084.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224071487|ref|XP_002303484.1| predicted protein [Populus trichocarpa] gi|222840916|gb|EEE78463.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356573857|ref|XP_003555072.1| PREDICTED: cleavage stimulation factor subunit 3-like [Glycine max] Back     alignment and taxonomy information
>gi|449453884|ref|XP_004144686.1| PREDICTED: cleavage stimulation factor subunit 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357497263|ref|XP_003618920.1| mRNA 3'-end-processing protein rna14 [Medicago truncatula] gi|355493935|gb|AES75138.1| mRNA 3'-end-processing protein rna14 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297850170|ref|XP_002892966.1| cleavage stimulation factor 77 [Arabidopsis lyrata subsp. lyrata] gi|297338808|gb|EFH69225.1| cleavage stimulation factor 77 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22329636|ref|NP_173218.2| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|26983802|gb|AAN86153.1| unknown protein [Arabidopsis thaliana] gi|332191512|gb|AEE29633.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21591637|gb|AAM64166.1|AF515697_1 cleavage stimulation factor 77 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|115489202|ref|NP_001067088.1| Os12g0571900 [Oryza sativa Japonica Group] gi|77556873|gb|ABA99669.1| Suppressor of forked protein containing protein, expressed [Oryza sativa Japonica Group] gi|113649595|dbj|BAF30107.1| Os12g0571900 [Oryza sativa Japonica Group] gi|215736851|dbj|BAG95780.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query774
TAIR|locus:2007973734 CSTF77 [Arabidopsis thaliana ( 0.824 0.869 0.699 1.5e-248
DICTYBASE|DDB_G0286645 1065 cstf3 "cleavage stimulation fa 0.660 0.479 0.409 1.4e-111
UNIPROTKB|E1BGY7718 CSTF3 "Uncharacterized protein 0.357 0.385 0.371 2.8e-103
UNIPROTKB|Q5F4A0718 CSTF3 "Uncharacterized protein 0.717 0.772 0.336 9e-90
ZFIN|ZDB-GENE-040426-1997716 cstf3 "cleavage stimulation fa 0.715 0.773 0.338 1.5e-89
UNIPROTKB|E2R479717 CSTF3 "Uncharacterized protein 0.717 0.774 0.336 6e-87
UNIPROTKB|Q12996717 CSTF3 "Cleavage stimulation fa 0.717 0.774 0.336 6e-87
MGI|MGI:1351825717 Cstf3 "cleavage stimulation fa 0.717 0.774 0.336 6e-87
WB|WBGene00006307735 suf-1 [Caenorhabditis elegans 0.642 0.676 0.340 2.6e-79
RGD|1305901647 Cstf3 "cleavage stimulation fa 0.664 0.794 0.337 3.3e-79
TAIR|locus:2007973 CSTF77 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2394 (847.8 bits), Expect = 1.5e-248, P = 1.5e-248
 Identities = 458/655 (69%), Positives = 528/655 (80%)

Query:    17 VADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNND 76
             +ADKY VE AE LA  ALH P+AQA PIYEQLLS++PT+    A+FWKQYVEA MAVNND
Sbjct:     1 MADKYIVEEAEALAKRALHSPIAQATPIYEQLLSLYPTS----ARFWKQYVEAQMAVNND 56

Query:    77 DATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSG 136
             DATKQ+FSRCLL CLQVPLW+CYIRFIRKVY+KKG EGQEET KAF+FML+++G+DI+SG
Sbjct:    57 DATKQIFSRCLLTCLQVPLWQCYIRFIRKVYDKKGAEGQEETTKAFEFMLNYIGTDIASG 116

Query:   137 PIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQ 196
             PIW EYI FLKSLPALN  E+  R  A+RK Y RA++TPTHHVEQLWKDYENFEN+V+RQ
Sbjct:   117 PIWTEYIAFLKSLPALNLNEDLHRKTALRKVYHRAILTPTHHVEQLWKDYENFENTVNRQ 176

Query:   197 LAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEK 256
             LAKGL++EYQ K+ SARAVYRERKKY EEIDWNMLAVPPTG+ KEE QW+AWK+ L+FEK
Sbjct:   177 LAKGLVNEYQPKFNSARAVYRERKKYIEEIDWNMLAVPPTGTSKEETQWVAWKKFLSFEK 236

Query:   257 GNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL 316
             GNPQRIDTASS KRII+ YEQCLM LYHYPD+WYDYA W+ KSGS DAAIKVFQRALKA+
Sbjct:   237 GNPQRIDTASSTKRIIYAYEQCLMCLYHYPDVWYDYAEWHVKSGSTDAAIKVFQRALKAI 296

Query:   317 PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK 376
             PDSEML+YAFAE+EESRGAI +AKKLYE++L  S N+  LAHIQ++RFLRR EGVEAARK
Sbjct:   297 PDSEMLKYAFAEMEESRGAIQSAKKLYENILGASTNS--LAHIQYLRFLRRAEGVEAARK 354

Query:   377 YFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR 436
             YFLDARKSP+ TYHVY+A+A MAFC DK+PK+AHN+FE GLK +M EP YIL+YADFL+R
Sbjct:   355 YFLDARKSPSCTYHVYIAFATMAFCIDKEPKVAHNIFEEGLKLYMSEPVYILKYADFLTR 414

Query:   437 LNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEE 496
             LNDDRNIRALFERALS+LP E+S EVWKRF QFEQ YGDL S LKVEQR KEALS  GEE
Sbjct:   415 LNDDRNIRALFERALSTLPVEDSAEVWKRFIQFEQTYGDLASILKVEQRMKEALSGKGEE 474

Query:   497 GASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALSNGPGIVDK 556
             G+S  E SLQDVVSRYS+MDLWPC+S DLDHL RQE LVKN+NKK  K+ L + P  +  
Sbjct:   475 GSSPPESSLQDVVSRYSYMDLWPCTSNDLDHLARQELLVKNLNKKAGKTNLPHVPAAI-- 532

Query:   557 GPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGIXXXXXXXXXXXXXXXXXXXMVATG 616
                    +  +S+ V+YPDTSQMV+ DP +K                        + AT 
Sbjct:   533 ------GSVASSSKVVYPDTSQMVVQDPTKKSEFA---SSANPVAASASNTFPSTVTATA 583

Query:   617 GGGIMNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDIPTGQMGK 671
               G  + FDE+ K   PA+ AFLANLP V+GPTPNVD+VLSICLQSD PTGQ  K
Sbjct:   584 THGSASTFDEIPKTTPPALVAFLANLPIVDGPTPNVDVVLSICLQSDFPTGQTVK 638
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006397 "mRNA processing" evidence=ISS
GO:0003729 "mRNA binding" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0031123 "RNA 3'-end processing" evidence=IMP
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
DICTYBASE|DDB_G0286645 cstf3 "cleavage stimulation factor subunit 3" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E1BGY7 CSTF3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F4A0 CSTF3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1997 cstf3 "cleavage stimulation factor, 3' pre-RNA, subunit 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R479 CSTF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q12996 CSTF3 "Cleavage stimulation factor subunit 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1351825 Cstf3 "cleavage stimulation factor, 3' pre-RNA, subunit 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00006307 suf-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
RGD|1305901 Cstf3 "cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q99LI7CSTF3_MOUSENo assigned EC number0.33510.85910.9274yesno
Q5RDW9CSTF3_PONABNo assigned EC number0.33370.85910.9274yesno
Q12996CSTF3_HUMANNo assigned EC number0.33510.85910.9274yesno
P25991SUF_DROMENo assigned EC number0.30900.87080.8810yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query774
COG5107660 COG5107, RNA14, Pre-mRNA 3'-end processing (cleava 2e-82
pfam05843271 pfam05843, Suf, Suppressor of forked protein (Suf) 2e-72
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 2e-04
TIGR02521234 TIGR02521, type_IV_pilW, type IV pilus biogenesis/ 8e-04
pfam1342844 pfam13428, TPR_14, Tetratricopeptide repeat 0.001
COG0457291 COG0457, NrfG, FOG: TPR repeat [General function p 0.001
pfam1343265 pfam13432, TPR_16, Tetratricopeptide repeat 0.002
smart0038633 smart00386, HAT, HAT (Half-A-TPR) repeats 0.003
>gnl|CDD|227438 COG5107, RNA14, Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information 
 Score =  276 bits (706), Expect = 2e-82
 Identities = 130/491 (26%), Positives = 221/491 (45%), Gaps = 32/491 (6%)

Query: 44  IYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFI 103
           +YEQL S FP     +   W+ Y+   +A  +  + + LF RCL   L + LW  Y+ +I
Sbjct: 64  MYEQLSSPFP----IMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLEYI 119

Query: 104 RKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIA 163
           R+V      + + +  +A++F+L     +  S   W EY  FL+ +  L   EE QR+  
Sbjct: 120 RRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDK 179

Query: 164 IRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYC 223
           IR  Y RA+ TP  ++E+LWKDYENFE  +++  A+  + E    Y SAR  Y+E +   
Sbjct: 180 IRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLT 239

Query: 224 EEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLY 283
             +         T +         W   + +E  N  ++      +RI + + Q L Y Y
Sbjct: 240 RGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFY 299

Query: 284 HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP--------------DSEMLR------ 323
           +  ++W+DY+ +         A+K  +R ++  P              D E +       
Sbjct: 300 YAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGCFDKC 359

Query: 324 -------YAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK 376
                  Y+  E E +       +   E LL   +N         + ++ R  G+EAARK
Sbjct: 360 TQDLKRKYSMGESESASKVDNNFEYSKE-LLLKRINKLTFVFCVHLNYVLRKRGLEAARK 418

Query: 377 YFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR 436
            F+  RK     +HVY+  A + +    D   A+N+FE GL +F     Y  +Y  FL R
Sbjct: 419 LFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478

Query: 437 LNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEE 496
           +ND+ N RALFE ++  L   +   ++ +  ++E M G L++   +E+R +E + +    
Sbjct: 479 INDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLI 538

Query: 497 GASALEDSLQD 507
                  +++ 
Sbjct: 539 EVFTSRYAIKA 549

Length = 660
>gnl|CDD|218774 pfam05843, Suf, Suppressor of forked protein (Suf) Back     alignment and domain information
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>gnl|CDD|222121 pfam13428, TPR_14, Tetratricopeptide repeat Back     alignment and domain information
>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat Back     alignment and domain information
>gnl|CDD|214642 smart00386, HAT, HAT (Half-A-TPR) repeats Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 774
KOG1914656 consensus mRNA cleavage and polyadenylation factor 100.0
COG5107660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 100.0
KOG1915677 consensus Cell cycle control protein (crooked neck 100.0
KOG1915677 consensus Cell cycle control protein (crooked neck 100.0
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 100.0
KOG2047835 consensus mRNA splicing factor [RNA processing and 100.0
KOG1258577 consensus mRNA processing protein [RNA processing 100.0
KOG0495913 consensus HAT repeat protein [RNA processing and m 100.0
KOG0495913 consensus HAT repeat protein [RNA processing and m 99.98
KOG2047835 consensus mRNA splicing factor [RNA processing and 99.96
KOG0128881 consensus RNA-binding protein SART3 (RRM superfami 99.92
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 99.91
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 99.9
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 99.9
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 99.88
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 99.86
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 99.86
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 99.86
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 99.85
KOG1914656 consensus mRNA cleavage and polyadenylation factor 99.84
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 99.82
PRK15174656 Vi polysaccharide export protein VexE; Provisional 99.8
KOG2396568 consensus HAT (Half-A-TPR) repeat-containing prote 99.79
PRK10049765 pgaA outer membrane protein PgaA; Provisional 99.78
PRK15174656 Vi polysaccharide export protein VexE; Provisional 99.78
PRK10049765 pgaA outer membrane protein PgaA; Provisional 99.77
KOG0547606 consensus Translocase of outer mitochondrial membr 99.71
PLN032181060 maturation of RBCL 1; Provisional 99.7
KOG1258577 consensus mRNA processing protein [RNA processing 99.7
KOG2396568 consensus HAT (Half-A-TPR) repeat-containing prote 99.7
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 99.7
PRK09782987 bacteriophage N4 receptor, outer membrane subunit; 99.69
PRK09782987 bacteriophage N4 receptor, outer membrane subunit; 99.68
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.65
PLN032181060 maturation of RBCL 1; Provisional 99.64
PLN03077857 Protein ECB2; Provisional 99.63
PRK11788389 tetratricopeptide repeat protein; Provisional 99.62
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 99.62
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 99.62
PRK11788389 tetratricopeptide repeat protein; Provisional 99.59
COG5107660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 99.59
PLN03077857 Protein ECB2; Provisional 99.56
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 99.56
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.54
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.54
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.52
KOG0547606 consensus Translocase of outer mitochondrial membr 99.52
PRK14574822 hmsH outer membrane protein; Provisional 99.52
PRK12370553 invasion protein regulator; Provisional 99.48
KOG0128881 consensus RNA-binding protein SART3 (RRM superfami 99.47
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.46
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.45
KOG2003840 consensus TPR repeat-containing protein [General f 99.45
PRK14574822 hmsH outer membrane protein; Provisional 99.43
KOG1126638 consensus DNA-binding cell division cycle control 99.43
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 99.42
PRK12370553 invasion protein regulator; Provisional 99.41
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.4
KOG1126638 consensus DNA-binding cell division cycle control 99.36
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.34
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.3
KOG2076895 consensus RNA polymerase III transcription factor 99.29
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.26
PRK11189296 lipoprotein NlpI; Provisional 99.25
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.24
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.22
KOG2076895 consensus RNA polymerase III transcription factor 99.22
PRK11189296 lipoprotein NlpI; Provisional 99.21
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 99.21
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.2
KOG1129478 consensus TPR repeat-containing protein [General f 99.1
PLN02789320 farnesyltranstransferase 99.06
KOG2003840 consensus TPR repeat-containing protein [General f 99.05
KOG1125579 consensus TPR repeat-containing protein [General f 99.03
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.02
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 98.98
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 98.98
KOG2376652 consensus Signal recognition particle, subunit Srp 98.96
KOG3060289 consensus Uncharacterized conserved protein [Funct 98.95
KOG1156700 consensus N-terminal acetyltransferase [Chromatin 98.93
PRK15359144 type III secretion system chaperone protein SscB; 98.92
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 98.9
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 98.9
PRK10370198 formate-dependent nitrite reductase complex subuni 98.86
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 98.86
cd05804355 StaR_like StaR_like; a well-conserved protein foun 98.85
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 98.84
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 98.84
PRK15359144 type III secretion system chaperone protein SscB; 98.83
PLN02789320 farnesyltranstransferase 98.82
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 98.81
KOG11271238 consensus TPR repeat-containing protein [RNA proce 98.78
KOG1129478 consensus TPR repeat-containing protein [General f 98.76
KOG1125579 consensus TPR repeat-containing protein [General f 98.75
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 98.74
PRK10370198 formate-dependent nitrite reductase complex subuni 98.74
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 98.71
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 98.71
TIGR02552135 LcrH_SycD type III secretion low calcium response 98.7
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 98.68
KOG3060289 consensus Uncharacterized conserved protein [Funct 98.68
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 98.67
KOG1128777 consensus Uncharacterized conserved protein, conta 98.67
KOG4162799 consensus Predicted calmodulin-binding protein [Si 98.67
TIGR02552135 LcrH_SycD type III secretion low calcium response 98.66
PF12569517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 98.64
cd05804355 StaR_like StaR_like; a well-conserved protein foun 98.64
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 98.61
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 98.6
PRK14720 906 transcript cleavage factor/unknown domain fusion p 98.6
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 98.58
PF12569517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 98.57
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 98.57
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 98.53
PRK14720 906 transcript cleavage factor/unknown domain fusion p 98.53
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 98.49
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 98.41
COG4783484 Putative Zn-dependent protease, contains TPR repea 98.32
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 98.31
cd00189100 TPR Tetratricopeptide repeat domain; typically con 98.3
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 98.24
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 98.24
KOG36171416 consensus WD40 and TPR repeat-containing protein [ 98.2
KOG1128777 consensus Uncharacterized conserved protein, conta 98.18
COG4783484 Putative Zn-dependent protease, contains TPR repea 98.18
COG5191435 Uncharacterized conserved protein, contains HAT (H 98.17
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 98.17
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 98.15
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 98.12
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 98.12
cd00189100 TPR Tetratricopeptide repeat domain; typically con 98.11
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.1
KOG2376652 consensus Signal recognition particle, subunit Srp 98.04
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 98.04
PRK02603172 photosystem I assembly protein Ycf3; Provisional 98.02
KOG0553304 consensus TPR repeat-containing protein [General f 98.0
COG4235287 Cytochrome c biogenesis factor [Posttranslational 97.94
KOG0553304 consensus TPR repeat-containing protein [General f 97.93
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 97.91
PF08311126 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro 97.91
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 97.9
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 97.89
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 97.88
COG0457291 NrfG FOG: TPR repeat [General function prediction 97.87
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 97.83
PRK11906458 transcriptional regulator; Provisional 97.83
PRK10153517 DNA-binding transcriptional activator CadC; Provis 97.8
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 97.79
PRK10803263 tol-pal system protein YbgF; Provisional 97.78
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 97.77
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 97.75
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 97.74
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 97.72
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 97.71
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 97.69
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 97.68
COG0457291 NrfG FOG: TPR repeat [General function prediction 97.68
CHL00033168 ycf3 photosystem I assembly protein Ycf3 97.68
COG5191435 Uncharacterized conserved protein, contains HAT (H 97.65
PRK10153517 DNA-binding transcriptional activator CadC; Provis 97.61
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 97.6
COG4235287 Cytochrome c biogenesis factor [Posttranslational 97.59
PF1342844 TPR_14: Tetratricopeptide repeat 97.55
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 97.55
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 97.54
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 97.54
KOG36171416 consensus WD40 and TPR repeat-containing protein [ 97.53
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 97.53
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 97.51
CHL00033168 ycf3 photosystem I assembly protein Ycf3 97.49
KOG3785557 consensus Uncharacterized conserved protein [Funct 97.46
PF1337173 TPR_9: Tetratricopeptide repeat 97.45
PRK10803263 tol-pal system protein YbgF; Provisional 97.43
PF12688120 TPR_5: Tetratrico peptide repeat 97.42
PRK02603172 photosystem I assembly protein Ycf3; Provisional 97.4
PRK11906458 transcriptional regulator; Provisional 97.36
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 97.33
PRK04841903 transcriptional regulator MalT; Provisional 97.33
PF08311126 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro 97.32
smart00777125 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 97.29
KOG3785557 consensus Uncharacterized conserved protein [Funct 97.26
PLN03098453 LPA1 LOW PSII ACCUMULATION1; Provisional 97.23
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 97.21
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 97.21
PF1337173 TPR_9: Tetratricopeptide repeat 97.2
KOG4555175 consensus TPR repeat-containing protein [Function 97.17
PF0218432 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 97.12
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 97.12
PF0218432 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 97.09
PF12688120 TPR_5: Tetratrico peptide repeat 97.06
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 97.06
PRK15331165 chaperone protein SicA; Provisional 97.05
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 97.05
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 97.04
COG4700251 Uncharacterized protein conserved in bacteria cont 96.97
PRK04841903 transcriptional regulator MalT; Provisional 96.88
PF13512142 TPR_18: Tetratricopeptide repeat 96.88
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 96.87
COG4700251 Uncharacterized protein conserved in bacteria cont 96.84
PF1343134 TPR_17: Tetratricopeptide repeat 96.82
PRK15331165 chaperone protein SicA; Provisional 96.78
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 96.76
COG1729262 Uncharacterized protein conserved in bacteria [Fun 96.7
COG1729262 Uncharacterized protein conserved in bacteria [Fun 96.63
smart0038633 HAT HAT (Half-A-TPR) repeats. Present in several R 96.6
COG4105254 ComL DNA uptake lipoprotein [General function pred 96.6
KOG2796366 consensus Uncharacterized conserved protein [Funct 96.5
smart0038633 HAT HAT (Half-A-TPR) repeats. Present in several R 96.47
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 96.42
COG3898531 Uncharacterized membrane-bound protein [Function u 96.38
PF13281374 DUF4071: Domain of unknown function (DUF4071) 96.37
PF06552186 TOM20_plant: Plant specific mitochondrial import r 96.3
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 96.29
KOG1585308 consensus Protein required for fusion of vesicles 96.18
KOG3616 1636 consensus Selective LIM binding factor [Transcript 96.18
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 96.16
KOG3616 1636 consensus Selective LIM binding factor [Transcript 96.11
KOG4234271 consensus TPR repeat-containing protein [General f 96.11
PF1342844 TPR_14: Tetratricopeptide repeat 96.03
smart00777125 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 96.0
PLN03098453 LPA1 LOW PSII ACCUMULATION1; Provisional 95.99
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 95.83
PF1343134 TPR_17: Tetratricopeptide repeat 95.67
KOG4555175 consensus TPR repeat-containing protein [Function 95.57
KOG4340459 consensus Uncharacterized conserved protein [Funct 95.53
PF13512142 TPR_18: Tetratricopeptide repeat 95.47
KOG4340459 consensus Uncharacterized conserved protein [Funct 95.36
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 95.32
KOG4234271 consensus TPR repeat-containing protein [General f 95.3
KOG4648536 consensus Uncharacterized conserved protein, conta 95.27
COG3118304 Thioredoxin domain-containing protein [Posttransla 95.25
KOG4648536 consensus Uncharacterized conserved protein, conta 95.17
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 95.14
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 95.04
KOG2796366 consensus Uncharacterized conserved protein [Funct 95.0
PF13281374 DUF4071: Domain of unknown function (DUF4071) 94.83
KOG1586288 consensus Protein required for fusion of vesicles 94.8
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 94.56
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 94.45
PF04910360 Tcf25: Transcriptional repressor TCF25; InterPro: 94.29
KOG1586288 consensus Protein required for fusion of vesicles 94.14
PF03704146 BTAD: Bacterial transcriptional activator domain; 94.0
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 93.95
COG3898531 Uncharacterized membrane-bound protein [Function u 93.8
PF03704146 BTAD: Bacterial transcriptional activator domain; 93.78
KOG1130639 consensus Predicted G-alpha GTPase interaction pro 93.76
PF06552186 TOM20_plant: Plant specific mitochondrial import r 93.37
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 93.34
COG3118304 Thioredoxin domain-containing protein [Posttransla 93.29
KOG2610491 consensus Uncharacterized conserved protein [Funct 93.25
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 93.25
COG4105254 ComL DNA uptake lipoprotein [General function pred 93.21
KOG3824472 consensus Huntingtin interacting protein HYPE [Gen 93.03
KOG1941518 consensus Acetylcholine receptor-associated protei 92.84
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 92.67
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 92.48
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 92.09
KOG1585308 consensus Protein required for fusion of vesicles 91.78
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 91.19
KOG3824472 consensus Huntingtin interacting protein HYPE [Gen 91.17
KOG2471696 consensus TPR repeat-containing protein [General f 91.11
KOG2610491 consensus Uncharacterized conserved protein [Funct 90.91
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 90.37
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 90.15
COG2976207 Uncharacterized protein conserved in bacteria [Fun 89.93
KOG0530318 consensus Protein farnesyltransferase, alpha subun 89.91
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 89.73
COG4976287 Predicted methyltransferase (contains TPR repeat) 89.68
KOG2422665 consensus Uncharacterized conserved protein [Funct 89.53
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 88.21
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 88.15
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 87.97
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 87.35
KOG0376476 consensus Serine-threonine phosphatase 2A, catalyt 86.85
PF04910360 Tcf25: Transcriptional repressor TCF25; InterPro: 86.45
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 85.96
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 85.66
KOG1308377 consensus Hsp70-interacting protein Hip/Transient 85.59
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 85.1
PF09986214 DUF2225: Uncharacterized protein conserved in bact 84.76
COG2976207 Uncharacterized protein conserved in bacteria [Fun 84.62
KOG3807556 consensus Predicted membrane protein ST7 (tumor su 84.41
KOG1166 974 consensus Mitotic checkpoint serine/threonine prot 84.21
KOG0376476 consensus Serine-threonine phosphatase 2A, catalyt 84.2
KOG15381081 consensus Uncharacterized conserved protein WDR10, 83.81
KOG08902382 consensus Protein kinase of the PI-3 kinase family 83.51
PF10345608 Cohesin_load: Cohesin loading factor; InterPro: IP 83.49
KOG0890 2382 consensus Protein kinase of the PI-3 kinase family 83.31
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 83.24
COG4976287 Predicted methyltransferase (contains TPR repeat) 83.23
KOG1130639 consensus Predicted G-alpha GTPase interaction pro 82.49
KOG0551390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 81.56
KOG1550552 consensus Extracellular protein SEL-1 and related 81.42
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 80.81
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-104  Score=839.82  Aligned_cols=614  Identities=37%  Similarity=0.639  Sum_probs=557.4

Q ss_pred             chhccccCCCCCHHHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004093           11 EENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC   90 (774)
Q Consensus        11 e~~i~~~~nP~d~~~W~~l~~~~~~~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n~~~a~~ifeRaL~~~   90 (774)
                      +++|+  .||+|+++|..|++++++++++++|..||+++..||.+    +++|+.||+.|++.++|+.++.+|.|||...
T Consensus        10 ~~rie--~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s----~r~W~~yi~~El~skdfe~VEkLF~RCLvkv   83 (656)
T KOG1914|consen   10 RERIE--ENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSS----PRAWKLYIERELASKDFESVEKLFSRCLVKV   83 (656)
T ss_pred             HHHHh--cCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCC----cHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            77899  99999999999999999999999999999999999999    9999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHhhCCcCchHHHhHHHHHHHHHHHH
Q 004093           91 LQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQR  170 (774)
Q Consensus        91 p~~~lW~~Yl~~~~~~~~~~~~~~~e~ar~~ye~aL~~vg~d~~s~~iW~~yi~fe~~~~~~~~~~~~~~~~~ar~vYqr  170 (774)
                      .+++||.+|+.|+++.+.. ....++++.++|++++..+|+|+.|.+||.+|+.|++.+++++.|+++|+++.+|++|+|
T Consensus        84 LnlDLW~lYl~YVR~~~~~-~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqr  162 (656)
T KOG1914|consen   84 LNLDLWKLYLSYVRETKGK-LFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQR  162 (656)
T ss_pred             hhHhHHHHHHHHHHHHccC-cchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHH
Confidence            9999999999999997753 345789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHHHHHHHH
Q 004093          171 AVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKR  250 (774)
Q Consensus       171 al~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~~pP~~~~~~~~q~~lW~~  250 (774)
                      |+.+|+++++++|++|++||+.+|..+++|++.|.++.||+||++|+++....++|+++...+||.++..+.+|+++|++
T Consensus       163 al~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n  242 (656)
T KOG1914|consen  163 ALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKN  242 (656)
T ss_pred             HhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999989999999999


Q ss_pred             HHHHHhcCCCCC-CchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHh
Q 004093          251 LLTFEKGNPQRI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGS--------------IDAAIKVFQRALKA  315 (774)
Q Consensus       251 yi~~Ek~n~~~~-d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~--------------~e~A~~v~erAl~~  315 (774)
                      ||.||++||+++ +.....+|+.++|+|||...++++++|++|+.|+...++              .+++.++||+++..
T Consensus       243 ~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~  322 (656)
T KOG1914|consen  243 WIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG  322 (656)
T ss_pred             HHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence            999999999995 667789999999999999999999999999999998877              78999999999986


Q ss_pred             C-CCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCHHH
Q 004093          316 L-PDSEMLRYAFAELEESRGA---IAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHV  391 (774)
Q Consensus       316 ~-P~~~~l~~~~a~l~e~~g~---~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~~~~~~~~~  391 (774)
                      . -.+..++++|+++++...+   .+....+|++++.....+.+++|++||+|.+|.++++.||.+|++|++.+...+|+
T Consensus       323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV  402 (656)
T KOG1914|consen  323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV  402 (656)
T ss_pred             HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence            4 4678899999999998766   88999999999998887788999999999999999999999999999999988999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCchhHHHHHHHHHHHH
Q 004093          392 YVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSS-LPPEESIEVWKRFTQFE  470 (774)
Q Consensus       392 ~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~-~p~e~~~~lw~~~~~fE  470 (774)
                      |+..|.|||+|++|...|.+||+.|++++++++.+.++|++|++++|+.+|||.+|||++.. ++++++..+|.+|++||
T Consensus       403 fVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE  482 (656)
T KOG1914|consen  403 FVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE  482 (656)
T ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999997 77789999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHHHcc--ccccCCcchhhhhhhhHhhhcccCCCCCCChhhhhhhHHHHHHHHhhhccccccccC
Q 004093          471 QMYGDLDSTLKVEQRRKEALS--RTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALS  548 (774)
Q Consensus       471 ~~~Gd~~~i~kv~~R~~~~~p--k~~~d~~~a~~~~~~~~~~ry~f~d~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  548 (774)
                      +++||++++.++++|+..++|  ++.+.+.+      ..+++||+|+|++||+..+||.|++.+-....+....   .++
T Consensus       483 S~vGdL~si~~lekR~~~af~~~qe~~~~~~------~~~v~RY~~~d~~~c~~~elk~l~~~~~~~~~~~~~g---~~~  553 (656)
T KOG1914|consen  483 SNVGDLNSILKLEKRRFTAFPADQEYEGNET------ALFVDRYGILDLYPCSLDELKFLGYKEEDSAGLGFVG---LLD  553 (656)
T ss_pred             HhcccHHHHHHHHHHHHHhcchhhcCCCChH------HHHHHHHhhcccccccHHHHHhhhHHHhhccccCCCC---chh
Confidence            999999999999999999999  34333433      3589999999999999999999999873210000000   000


Q ss_pred             CCCCccCCCCCCCCCCCCCCCCCcCCCCCCccccCCCCCCCCCCCCCCCCCCCccccccCCCCccccCCCCCCCchhhhh
Q 004093          549 NGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGISPSTTATGASSALNALSNPMVATGGGGIMNPFDEML  628 (774)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (774)
                      .....++.    .+........+++||++||+||+||.+++||.||++||      +|                      
T Consensus       554 ~~s~~~~~----~~~~~nv~~~~~~pd~~qli~~~~r~n~~~~~~p~~~g------v~----------------------  601 (656)
T KOG1914|consen  554 AFSSNLGK----ISQHSNVLMELPRPDVSQLIPFQPRSNAPPSAHPVPGG------VF----------------------  601 (656)
T ss_pred             hhhhhccc----ccccccccccCCchhHHHhcccCCCCCCCCccCCCCCC------CC----------------------
Confidence            00000111    01123334468999999999999999999999999987      67                      


Q ss_pred             hcCCHHHHHHHhhCC---CCCCCCCCHHHHHHHHhcCCCCCCCcCCCC
Q 004093          629 KAASPAIFAFLANLP---AVEGPTPNVDIVLSICLQSDIPTGQMGKSP  673 (774)
Q Consensus       629 ~~~p~~~~~~~~~~p---~~~gp~~~vd~~~~~~~~~~~~~~~~~~~~  673 (774)
                       |+||+++.||+.||   ||+|||++|+.|++|+.+|+||+-..-++|
T Consensus       602 -p~P~~v~~ll~~lP~p~~f~gp~i~~~ll~~~~~~~~iP~v~~~~~~  648 (656)
T KOG1914|consen  602 -PLPPAVADLLSLLPPPQCFNGPFIQVELLNDIIDRVEIPNVESTKSG  648 (656)
T ss_pred             -CCChHHHHHHHcCCCcccccCccccHHHHHHHHHhccCCCccccccc
Confidence             99999999999999   899999999999999999999986655444

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division Back     alignment and domain information
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>smart00386 HAT HAT (Half-A-TPR) repeats Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00386 HAT HAT (Half-A-TPR) repeats Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>KOG2422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] Back     alignment and domain information
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query774
2ooe_A530 Crystal Structure Of Hat Domain Of Murine Cstf-77 L 1e-105
2ond_A308 Crystal Structure Of The Hat-C Domain Of Murine Cst 1e-55
4e6h_A679 Crystal Structure Of The Hat Domain Of K. Lactis Rn 9e-33
4e85_A678 Crystal Structure Of Hat Domain Of Rna14 Length = 6 9e-33
4eba_A645 Crystal Structure Of The Rna14-Rna15 Complex Length 3e-32
2uy1_B493 Crystal Structure Of Cstf-77 Length = 493 1e-22
2uy1_A493 Crystal Structure Of Cstf-77 Length = 493 2e-22
>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77 Length = 530 Back     alignment and structure 
Iteration: 1

 Score =  380 bits (975), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/528 (39%), Positives = 304/528 (57%), Gaps = 33/528 (6%)
Query: 21  YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDDATK 80
           Y+++   IL   A + P+ +A   YE+L++ FP++     +FWK Y+EA +   N D  +
Sbjct: 11  YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVE 66
Query: 81  QLFSRCLLICLQVPLWRCYIRFIRKVYEKKGT--EGQEETRKAFDFMLSHVGSDISSGPI 138
           +LF RCL+  L + LW+CY+ ++R   E KG     +E+  +A+DF L  +G +I S  I
Sbjct: 67  KLFQRCLMKVLHIDLWKCYLSYVR---ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQI 123
Query: 139 WLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLA 198
           W++YI FLK + A+ +  E+QR+ A+R+ YQR  V P  ++EQLW+DY  +E  ++  LA
Sbjct: 124 WVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLA 183
Query: 199 KGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGN 258
           K ++ +    Y +AR V +E +   + +D N  +VPP  + +E QQ   WK+ + +EK N
Sbjct: 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243
Query: 259 PQRI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI--------------D 303
           P R  D     KR++F YEQCL+ L H+PDIWY+ A +  +S  +              D
Sbjct: 244 PLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303
Query: 304 AAIKVFQRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 362
            A  +++RA+  L    ML Y A+A+ EESR        +Y  LL        L +IQ++
Sbjct: 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYM 363
Query: 363 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 422
           +F RR EG+++ R  F  AR+     +HVYV  ALM +   KD  +A  +FE GLK++  
Sbjct: 364 KFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD 423
Query: 423 EPAYILEYADFLSRLNDDRNIRALFERALS--SLPPEESIEVWKRFTQFEQMYGDLDSTL 480
            P Y+L Y D+LS LN+D N R LFER L+  SLPPE+S E+W RF  FE   GDL S L
Sbjct: 424 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483
Query: 481 KVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHL 528
           KVE+RR  A     E   +AL      +V RY FMDL+PCS+ +L  L
Sbjct: 484 KVEKRRFTAFREEYEGKETAL------LVDRYKFMDLYPCSASELKAL 525
>pdb|2OND|A Chain A, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77 Length = 308 Back     alignment and structure
>pdb|4E6H|A Chain A, Crystal Structure Of The Hat Domain Of K. Lactis Rna14 Length = 679 Back     alignment and structure
>pdb|4E85|A Chain A, Crystal Structure Of Hat Domain Of Rna14 Length = 678 Back     alignment and structure
>pdb|4EBA|A Chain A, Crystal Structure Of The Rna14-Rna15 Complex Length = 645 Back     alignment and structure
>pdb|2UY1|B Chain B, Crystal Structure Of Cstf-77 Length = 493 Back     alignment and structure
>pdb|2UY1|A Chain A, Crystal Structure Of Cstf-77 Length = 493 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query774
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 1e-133
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 1e-124
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 1e-119
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 5e-81
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
3tax_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 2e-04
2vsy_A568 XCC0866; transferase, glycosyl transferase, GT-B, 2e-04
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 6e-04
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Back     alignment and structure
 Score =  406 bits (1043), Expect = e-133
 Identities = 202/533 (37%), Positives = 307/533 (57%), Gaps = 29/533 (5%)

Query: 18  ADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNNDD 77
            + Y+++   IL   A + P+ +A   YE+L++ FP++     +FWK Y+EA +   N D
Sbjct: 8   ENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSG----RFWKLYIEAEIKAKNYD 63

Query: 78  ATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGP 137
             ++LF RCL+  L + LW+CY+ ++R+   K     +E+  +A+DF L  +G +I S  
Sbjct: 64  KVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKL-PSYKEKMAQAYDFALDKIGMEIMSYQ 122

Query: 138 IWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQL 197
           IW++YI FLK + A+ +  E+QR+ A+R+ YQR  V P  ++EQLW+DY  +E  ++  L
Sbjct: 123 IWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHL 182

Query: 198 AKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKG 257
           AK ++ +    Y +AR V +E +   + +D N  +VPP  + +E QQ   WK+ + +EK 
Sbjct: 183 AKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS 242

Query: 258 NPQRI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI-------------- 302
           NP R  D     KR++F YEQCL+ L H+PDIWY+ A +  +S  +              
Sbjct: 243 NPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302

Query: 303 DAAIKVFQRALKAL-PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQF 361
           D A  +++RA+  L   + +L +A+A+ EESR        +Y  LL        L +IQ+
Sbjct: 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY 362

Query: 362 IRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM 421
           ++F RR EG+++ R  F  AR+     +HVYV  ALM +   KD  +A  +FE GLK++ 
Sbjct: 363 MKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG 422

Query: 422 HEPAYILEYADFLSRLNDDRNIRALFERALS--SLPPEESIEVWKRFTQFEQMYGDLDST 479
             P Y+L Y D+LS LN+D N R LFER L+  SLPPE+S E+W RF  FE   GDL S 
Sbjct: 423 DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482

Query: 480 LKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQE 532
           LKVE+RR  A     E   +AL      +V RY FMDL+PCS+ +L  L  ++
Sbjct: 483 LKVEKRRFTAFREEYEGKETAL------LVDRYKFMDLYPCSASELKALGYKD 529
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query774
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 100.0
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 100.0
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 100.0
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 100.0
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 100.0
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 99.97
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 99.96
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 99.94
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 99.94
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 99.93
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 99.92
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 99.9
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 99.89
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 99.89
2gw1_A514 Mitochondrial precursor proteins import receptor; 99.88
2gw1_A514 Mitochondrial precursor proteins import receptor; 99.88
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 99.87
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.84
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 99.83
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 99.81
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.8
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.79
4g1t_A472 Interferon-induced protein with tetratricopeptide 99.76
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.74
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.73
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.73
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.72
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.71
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.69
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.68
3u4t_A272 TPR repeat-containing protein; structural genomics 99.68
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.68
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.68
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.68
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.67
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.67
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.67
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.65
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.65
4g1t_A472 Interferon-induced protein with tetratricopeptide 99.63
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.62
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.62
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.59
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.59
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.57
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.56
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.56
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.56
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.53
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.53
3u4t_A272 TPR repeat-containing protein; structural genomics 99.5
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.49
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.49
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.47
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.47
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.47
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.43
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.43
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.42
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.41
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.4
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.39
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.38
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.38
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.36
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 99.35
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.33
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.33
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 99.33
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.32
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.32
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.32
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.32
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 99.31
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 99.31
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.3
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.3
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.3
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 99.28
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.28
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 99.28
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.23
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 99.23
1xi4_A1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.2
2vsy_A568 XCC0866; transferase, glycosyl transferase, GT-B, 99.2
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.2
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.19
2vsy_A568 XCC0866; transferase, glycosyl transferase, GT-B, 99.19
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.18
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.18
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.16
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.16
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.15
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.14
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 99.13
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 99.13
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 99.1
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 99.1
1xi4_A1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.09
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.09
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.08
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 99.06
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.06
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 99.05
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 99.04
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.03
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 99.01
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 99.0
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 99.0
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 98.99
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 98.98
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 98.97
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 98.96
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 98.96
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 98.95
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 98.95
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 98.94
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 98.93
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 98.92
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 98.92
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 98.91
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 98.89
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 98.89
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 98.87
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 98.87
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 98.87
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 98.86
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 98.85
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 98.84
3q15_A378 PSP28, response regulator aspartate phosphatase H; 98.83
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 98.83
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 98.82
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 98.81
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 98.81
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 98.8
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 98.8
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 98.8
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 98.79
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 98.79
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 98.78
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 98.77
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 98.76
3q49_B137 STIP1 homology and U box-containing protein 1; E3 98.76
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 98.75
3u3w_A293 Transcriptional activator PLCR protein; ternary co 98.73
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 98.73
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 98.72
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 98.7
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 98.7
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 98.69
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 98.68
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 98.68
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 98.67
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 98.67
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 98.67
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 98.67
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 98.67
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 98.67
1b89_A449 Protein (clathrin heavy chain); triskelion, coated 98.66
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 98.65
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 98.65
3q49_B137 STIP1 homology and U box-containing protein 1; E3 98.64
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 98.63
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 98.63
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 98.61
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 98.61
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 98.6
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 98.53
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 98.52
1b89_A449 Protein (clathrin heavy chain); triskelion, coated 98.5
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 98.5
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 98.5
1wao_1477 Serine/threonine protein phosphatase 5; hydrolase, 98.48
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 98.46
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 98.46
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 98.45
2kat_A115 Uncharacterized protein; NESG, structure, structur 98.45
3u3w_A293 Transcriptional activator PLCR protein; ternary co 98.44
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 98.44
3k9i_A117 BH0479 protein; putative protein binding protein, 98.44
1wao_1477 Serine/threonine protein phosphatase 5; hydrolase, 98.43
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 98.42
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 98.41
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 98.39
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 98.39
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 98.38
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 98.37
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 98.37
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 98.37
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 98.32
3k9i_A117 BH0479 protein; putative protein binding protein, 98.29
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 98.25
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 98.24
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 98.22
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 98.21
2l6j_A111 TPR repeat-containing protein associated with HSP; 98.2
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 98.19
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 98.17
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 98.11
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 98.1
2kat_A115 Uncharacterized protein; NESG, structure, structur 98.06
4g26_A501 Pentatricopeptide repeat-containing protein AT2G3 98.02
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 97.93
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 97.93
2wvi_A164 Mitotic checkpoint serine/threonine-protein kinase 97.87
4aez_C223 MAD3, mitotic spindle checkpoint component MAD3; c 97.82
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 97.82
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 97.8
4g26_A501 Pentatricopeptide repeat-containing protein AT2G3 97.78
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 97.74
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 97.71
2l6j_A111 TPR repeat-containing protein associated with HSP; 97.67
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 97.6
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 97.54
1klx_A138 Cysteine rich protein B; structural genomics, heli 97.51
1klx_A138 Cysteine rich protein B; structural genomics, heli 97.45
4aez_C223 MAD3, mitotic spindle checkpoint component MAD3; c 97.44
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 97.43
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 97.42
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 97.4
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 97.24
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 97.24
1pc2_A152 Mitochondria fission protein; unknown function; NM 97.19
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 97.13
2wvi_A164 Mitotic checkpoint serine/threonine-protein kinase 97.1
1pc2_A152 Mitochondria fission protein; unknown function; NM 96.42
3qww_A433 SET and MYND domain-containing protein 2; methyltr 96.22
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 96.18
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 95.9
3qww_A433 SET and MYND domain-containing protein 2; methyltr 95.71
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 95.34
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 94.98
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 94.66
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 92.1
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 89.81
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 89.45
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 89.18
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 89.11
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 88.36
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 88.31
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 87.39
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 87.21
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 86.7
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 86.56
1zbp_A273 Hypothetical protein VPA1032; alpha-beta protein, 86.29
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 85.36
4gns_B754 Protein CSD3, chitin biosynthesis protein CHS6; FN 84.13
4gns_B754 Protein CSD3, chitin biosynthesis protein CHS6; FN 83.3
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 82.7
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 82.49
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 80.73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
Probab=100.00  E-value=1.9e-67  Score=619.86  Aligned_cols=504  Identities=23%  Similarity=0.421  Sum_probs=454.0

Q ss_pred             cchhccccCCCCCHHHHHHHHHHhcc-CChhhHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHH
Q 004093           10 SEENITGVADKYNVETAEILANSALH-LPVAQAAPIYEQLLSVFPTAVSFIAKFWKQYVEAYMAVNN---DDATKQLFSR   85 (774)
Q Consensus        10 ~e~~i~~~~nP~d~~~W~~l~~~~~~-~~i~~Ar~~yeral~~~P~~~~~~~~~W~~y~~~e~~~~n---~~~a~~ifeR   85 (774)
                      .|++|.  .||+|+++|..|++.++. +.++++|.+||+++..||.+    ..+|..|+++|++.++   ++.++++|+|
T Consensus        55 lE~~l~--~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~----~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR  128 (679)
T 4e6h_A           55 LNDMIE--EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLM----ANIWCMRLSLEFDKMEELDAAVIEPVLAR  128 (679)
T ss_dssp             HHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred             HHHHHH--HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence            466777  999999999999997654 58999999999999999999    9999999999999999   9999999999


Q ss_pred             HHccC---CCHHHHHHHHHHHHHHhhcc-C-CccHHHHHHHHHHHHHhcCC-CCCChHhHHHHHHHHhhCCcCchHHHhH
Q 004093           86 CLLIC---LQVPLWRCYIRFIRKVYEKK-G-TEGQEETRKAFDFMLSHVGS-DISSGPIWLEYITFLKSLPALNAQEESQ  159 (774)
Q Consensus        86 aL~~~---p~~~lW~~Yl~~~~~~~~~~-~-~~~~e~ar~~ye~aL~~vg~-d~~s~~iW~~yi~fe~~~~~~~~~~~~~  159 (774)
                      ||..+   +++++|..|++|+.+.++.. + .++.+.++++|++|+..+|. |+.++.||..|++|+++......+++++
T Consensus       129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~  208 (679)
T 4e6h_A          129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ  208 (679)
T ss_dssp             HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence            99999   99999999999999876542 1 34578899999999999999 9999999999999999887777788888


Q ss_pred             HHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-------
Q 004093          160 RMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLA-------  232 (774)
Q Consensus       160 ~~~~ar~vYqral~~P~~~~e~l~~~y~~fE~~~~~~lak~~l~e~~~~y~~Ar~i~k~~~~~~~~L~~~~~~-------  232 (774)
                      +++.+|++|+|+|.+|+.+++.+|..|..||+.++..++++++.+..+.|+.|+.+++++..+++.|.+....       
T Consensus       209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~  288 (679)
T 4e6h_A          209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE  288 (679)
T ss_dssp             HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence            9999999999999999999999999999999999888999999999999999999999999998888754221       


Q ss_pred             --CCCCCCchhHHHHHHHHHHHHHHhcCCCCCCchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH-HHH
Q 004093          233 --VPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAI-KVF  309 (774)
Q Consensus       233 --~pP~~~~~~~~q~~lW~~yi~~Ek~n~~~~d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g~~e~A~-~v~  309 (774)
                        +|+. ...+..++.+|++||.||+.++..++.....+|+..+|++||..+|+++++|+.|+.|+...|+.++|+ ++|
T Consensus       289 ~~~p~~-~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il  367 (679)
T 4e6h_A          289 SNLPKP-NEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYL  367 (679)
T ss_dssp             TTSCCT-TCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred             ccCCCC-chhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence              2222 223567899999999999999888876667889999999999999999999999999999999999996 999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC-----------CC----------CcHHHHHHHHHHHHHh
Q 004093          310 QRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS-----------VN----------TTALAHIQFIRFLRRT  368 (774)
Q Consensus       310 erAl~~~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~-----------~~----------~~~~~~~~~a~~~~r~  368 (774)
                      ++|+..||.+..||+.|+.+++..|++++|+++|++++...           |.          ..+.+|+.|++|++|.
T Consensus       368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~  447 (679)
T 4e6h_A          368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI  447 (679)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999742           21          1356999999999999


Q ss_pred             cCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 004093          369 EGVEAARKYFLDARKS-PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALF  447 (774)
Q Consensus       369 ~~~~~Ar~if~~al~~-~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lf  447 (774)
                      +++++||++|.+|++. +.+.+++|+.+|.+|+++.++.+.|++||++|++.+|+++.+|..|++|+...|+.++||.+|
T Consensus       448 ~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lf  527 (679)
T 4e6h_A          448 QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLF  527 (679)
T ss_dssp             HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence            9999999999999998 778899999999999998667999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCC-chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccccccCCcchhhhhhhhHhhhcccCCCCCCChhhhh
Q 004093          448 ERALSSLP-PEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLD  526 (774)
Q Consensus       448 EraL~~~p-~e~~~~lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~~~d~~~a~~~~~~~~~~ry~f~d~~p~~~~~l~  526 (774)
                      |+|+..++ +++...+|..|++||..+|+++++.++++|+.+++|+.         +.+..+++||++++..||...+|.
T Consensus       528 eral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~---------~~~~~f~~ry~~~~~~~i~~~~l~  598 (679)
T 4e6h_A          528 ESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV---------NKLEEFTNKYKVLDVNYLQRLELD  598 (679)
T ss_dssp             HHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC---------CHHHHHHHHTCBTTBCHHHHHTCT
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------cHHHHHHHHhcCCcchhHHHHHhh
Confidence            99999887 45788999999999999999999999999999999932         245579999999999999888887


Q ss_pred             hhH
Q 004093          527 HLV  529 (774)
Q Consensus       527 ~l~  529 (774)
                      ++.
T Consensus       599 ~~~  601 (679)
T 4e6h_A          599 YMV  601 (679)
T ss_dssp             TC-
T ss_pred             hcc
Confidence            775
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A Back     alignment and structure
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 774
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 2e-64
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 9e-13
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 6e-06
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 2e-05
d1zbpa1264 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V 3e-04
d1fcha_323 a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting 0.002
d1ihga1169 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau 0.002
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  215 bits (547), Expect = 2e-64
 Identities = 123/311 (39%), Positives = 170/311 (54%), Gaps = 24/311 (7%)

Query: 240 KEEQQWIAWKRLLTFEKGNPQRI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATW--- 295
           +E QQ   WK+ + +EK NP R  D     KR++F YEQCL+ L H+PDIWY+ A +   
Sbjct: 3   QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQ 62

Query: 296 -----------NAKSGSIDAAIKVFQRALKAL-PDSEMLRYAFAELEESRGAIAAAKKLY 343
                      N      D A  +++RA+  L   + +L +A+A+ EESR        +Y
Sbjct: 63  SSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 122

Query: 344 ESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQD 403
             LL        L +IQ+++F RR EG+++ R  F  AR+     +HVYV  ALM +   
Sbjct: 123 NRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS 182

Query: 404 KDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSS--LPPEESIE 461
           KD  +A  +FE GLK++   P Y+L Y D+LS LN+D N R LFER L+S  LPPE+S E
Sbjct: 183 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242

Query: 462 VWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCS 521
           +W RF  FE   GDL S LKVE+RR  A     E            +V RY FMDL+PCS
Sbjct: 243 IWARFLAFESNIGDLASILKVEKRRFTAFREEYE------GKETALLVDRYKFMDLYPCS 296

Query: 522 SKDLDHLVRQE 532
           + +L  L  ++
Sbjct: 297 ASELKALGYKD 307
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query774
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 100.0
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 99.92
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 99.89
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.88
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.69
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.63
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.51
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.41
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.33
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.31
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.23
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.04
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 98.93
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 98.92
d1hz4a_366 Transcription factor MalT domain III {Escherichia 98.84
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 98.81
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 98.8
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 98.77
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 98.76
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 98.75
d1hz4a_366 Transcription factor MalT domain III {Escherichia 98.69
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 98.65
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 98.62
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 98.6
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 98.58
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 98.52
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 98.49
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 98.47
d1ya0a1497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 98.42
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 98.41
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 98.4
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 98.4
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 98.36
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 98.27
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 98.23
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 98.23
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 98.21
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 98.19
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 98.17
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 98.16
d1ya0a1497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 98.16
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 98.08
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 98.03
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 97.98
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 97.9
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 97.8
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 97.5
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 97.44
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 97.44
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 97.17
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 97.16
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 97.12
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 96.42
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 95.74
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 95.49
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 94.58
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-39  Score=344.36  Aligned_cols=287  Identities=42%  Similarity=0.714  Sum_probs=261.3

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCCC-CchhchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------------CHHH
Q 004093          240 KEEQQWIAWKRLLTFEKGNPQRI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG--------------SIDA  304 (774)
Q Consensus       240 ~~~~q~~lW~~yi~~Ek~n~~~~-d~~~~~~r~~~~yeraL~~~p~~~~iW~~ya~~l~~~g--------------~~e~  304 (774)
                      .+.+++++|++||.||++++..+ +.....+||..+|+|||..+|+++++|+.|+.|+.+.+              ..++
T Consensus         3 ~e~~~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (308)
T d2onda1           3 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE   82 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHH
Confidence            35678999999999999998877 34456789999999999999999999999999997654              3578


Q ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 004093          305 AIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARK  383 (774)
Q Consensus       305 A~~v~erAl~~-~P~~~~l~~~~a~l~e~~g~~e~A~~iyek~l~~~~~~~~~~~~~~a~~~~r~~~~~~Ar~if~~al~  383 (774)
                      |+++|++|+.. +|.+..+|+.|+.+++..|++++|+.+|++++...+.+...+|+.|+.++++.++++.||++|+++++
T Consensus        83 a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~  162 (308)
T d2onda1          83 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE  162 (308)
T ss_dssp             HHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            99999999985 78999999999999999999999999999999998876678999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--chhHHH
Q 004093          384 SPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP--PEESIE  461 (774)
Q Consensus       384 ~~~~~~~~~i~~A~lE~~~~gd~~~A~~ife~al~~~p~~~~l~~~ya~~l~~~gd~~~Ar~lfEraL~~~p--~e~~~~  461 (774)
                      ..+..++.|+.+|.+++...|+.+.|+++|+++++.+|+++.+|..|++|+..+|++++||.+|++|+..++  +++...
T Consensus       163 ~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~  242 (308)
T d2onda1         163 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE  242 (308)
T ss_dssp             STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred             hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence            988889999999999988889999999999999999999999999999999999999999999999999765  456688


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHccccccCCcchhhhhhhhHhhhcccCCCCCCChhhhhhhHHHH
Q 004093          462 VWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQE  532 (774)
Q Consensus       462 lw~~~~~fE~~~Gd~~~i~kv~~R~~~~~pk~~~d~~~a~~~~~~~~~~ry~f~d~~p~~~~~l~~l~~~~  532 (774)
                      +|..|+.||..+|+++++.++.+|+.+.+|...+.      .....+.+||+++|+.||++.+|+.|||++
T Consensus       243 iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~------~~~~~~~~ry~~~d~~~~~~~~l~~~~~~~  307 (308)
T d2onda1         243 IWARFLAFESNIGDLASILKVEKRRFTAFREEYEG------KETALLVDRYKFMDLYPCSASELKALGYKD  307 (308)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS------CHHHHHHTTTCBTTBCSSCHHHHHTTTCCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccccc------chHHHHHHHHHhcccCcCCHHHHHHhcccc
Confidence            99999999999999999999999999999954322      134568999999999999999999999864
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure