Citrus Sinensis ID: 004110

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770---
MKDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHcccEEEEEcEEEEccccccccccccccEEEEEEEccccccccccccccEEEccccEEEcccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHcccHHHHHHcccHcHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHcccccccccccccccccEccccccEcHHHHcccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEccHHHcccEEEEEEEEccccccccHHHHHcccccEEEEEEccccccc
mkdpkekakSETRDWLNNLVSELESQIDSFEAELEGltvkkgktrpprlthlETSITRHKAHIMKLELILRLldndelspeqvNDVKDLLEDYVERnqddfeefsdvdelyhllpldkvesledlvtigppglvkgapalSLKASLAASASQMPATVISTHQQVTSVqeqgedtasqdsnsdvaartppakssgvgstastpavgpatpisinvpaqtlsnasntspvlpgsssvrgvfdntgpisssppvnltsstkeedvgnfpgrrsspsltdvrvmgrgglssqpsssiplssatavpsngnlgavplvsdVAKRNILGAeerlgssgmvqsLVSPLSNRMILSqaakgndgtgsidsnnagetvamagrvftpsmgmqwrtgnsfqnqnepgqfrgrteiapdQREKFLQRLQQVQQQGHsnllgmplggnkqfssqqnpllqqfnsqgssisaqaglglgvqapgmnsvtsaslqqqpnpihqqssqqtlmsggqkdadvshlkveepqqpqnlpeestpesasspglgknliheddlkapyaidsstgvsasltepaqvvrdtdlspgqplqssqpsgglgvigrrsvsdlgaigdslsgatvssggmhdqMYNMQMLESAfyklpqpkdserarsyiprhpavtppsypqvqapivsnpafwerlsldsygtdTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTwfqrheepkvandefeqgtyvyfdfhianddlqhgwcQRIKTEFTFEynyledeliv
mkdpkekaksetrdwLNNLVSELESQIDSFEAELegltvkkgktrpprlthletsitrhkaHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEdtasqdsnsdvaartppakssgvgstastpaVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNtgpisssppvnltsstkeedvgnfpgrrsspsltdvRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGaeerlgssgmVQSLVSPLSNRMILSQAAkgndgtgsidsnnagETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPqqpqnlpeestpesaSSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDlspgqplqssqpsgglgvIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTwfqrheepkvANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
MKDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGapalslkaslaasasQMPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGlssqpsssiplssATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFlqrlqqvqqqGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVeepqqpqnlpeestpesasspGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDlspgqplqssqpsgglgVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
**************************************************HLETSITRHKAHIMKLELILRLLDNDELS**QVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGA*****************************************************************************************************************************************************************************PLVSDV******************************************************************************************************************************************************************************************************************************************************************************************************************************************************VQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE***
*KDPKEKAKSETRDWLNNLVSELESQIDSF*************************ITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVE*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************MQMLESAFYKLPQ***SE*********PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQ***************TYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELI*
************RDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVIS*******************************************AVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSS****************FPGRRSSPSLTDVRVMGR*****************AVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSV******************************VSHLKV**********************LGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDT****************LGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
*KDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTI************************************************************************************************************************************************************************************************************************************************************************************IAPDQREKFLQRLQQVQQQGHSNLLGM************NP*****NS**************V**P***********************************************************************************************************************I*RRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED*L**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKDPKEKAKSETxxxxxxxxxxxxxxxxxxxxxxxxxxxxKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query773 2.2.26 [Sep-21-2011]
Q8K0V4751 CCR4-NOT transcription co yes no 0.181 0.186 0.542 2e-43
O75175753 CCR4-NOT transcription co yes no 0.181 0.185 0.542 2e-43
O13870640 General negative regulato yes no 0.208 0.251 0.416 9e-34
Q52JK6603 Probable NOT transcriptio N/A no 0.239 0.306 0.266 8e-11
Q9NZN8540 CCR4-NOT transcription co no no 0.146 0.209 0.310 2e-10
Q8C5L3540 CCR4-NOT transcription co no no 0.115 0.164 0.34 2e-10
P06102836 General negative regulato yes no 0.130 0.120 0.351 6e-08
Q9FPW4614 Probable NOT transcriptio no no 0.089 0.112 0.376 8e-08
P06100191 General negative regulato no no 0.163 0.659 0.329 7e-07
Q12514560 General negative regulato no no 0.228 0.316 0.273 9e-07
>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1 Back     alignment and function desciption
 Score =  178 bits (451), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)

Query: 617 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 676
           +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665

Query: 677 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 736
              T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722

Query: 737 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 769
           +YFD+          W QR K  FTFEY YLED
Sbjct: 723 IYFDY--------EKWGQRKKEGFTFEYRYLED 747
The CCR4-NOT complex functions as general transcription regulation complex.
Mus musculus (taxid: 10090)
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1 Back     alignment and function description
>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not3 PE=1 SV=2 Back     alignment and function description
>sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1 Back     alignment and function description
>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1 Back     alignment and function description
>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2 PE=2 SV=2 Back     alignment and function description
>sp|P06102|NOT3_YEAST General negative regulator of transcription subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT3 PE=1 SV=2 Back     alignment and function description
>sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana GN=VIP2 PE=1 SV=2 Back     alignment and function description
>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC36 PE=1 SV=1 Back     alignment and function description
>sp|Q12514|NOT5_YEAST General negative regulator of transcription subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query773
297739742 897 unnamed protein product [Vitis vinifera] 0.990 0.853 0.765 0.0
255568948 889 conserved hypothetical protein [Ricinus 0.983 0.854 0.740 0.0
359481840 888 PREDICTED: uncharacterized protein LOC10 0.979 0.852 0.750 0.0
224125888 886 predicted protein [Populus trichocarpa] 0.980 0.855 0.745 0.0
224144772 895 predicted protein [Populus trichocarpa] 0.984 0.850 0.704 0.0
356560386 884 PREDICTED: uncharacterized protein LOC10 0.975 0.852 0.691 0.0
449446768 900 PREDICTED: uncharacterized protein LOC10 0.993 0.853 0.675 0.0
356559538 892 PREDICTED: uncharacterized protein LOC10 0.985 0.854 0.670 0.0
356571684 882 PREDICTED: uncharacterized protein LOC10 0.967 0.848 0.679 0.0
357508635 901 CCR4-NOT transcription complex subunit [ 0.966 0.829 0.652 0.0
>gi|297739742|emb|CBI29924.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1138 bits (2943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/781 (76%), Positives = 675/781 (86%), Gaps = 15/781 (1%)

Query: 3   DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAH 62
           DPKEKAKSETRDWLN +V ELESQIDSFEAE+EGL+VKKGKTRPPRLTHLETSI RHKAH
Sbjct: 122 DPKEKAKSETRDWLNTVVGELESQIDSFEAEIEGLSVKKGKTRPPRLTHLETSIARHKAH 181

Query: 63  IMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESL 122
           IMKLELILRLLDNDELSPEQVNDVKD L+DYVERNQ+DFEEFSDVD+LY+ LPLDKVESL
Sbjct: 182 IMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDDLYNSLPLDKVESL 241

Query: 123 EDLVTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSNSD 182
           EDLVTIG PGLVKGAPALSLK SL  + +Q+PATV S  QQ TS+QEQ E+TASQDSNS+
Sbjct: 242 EDLVTIGAPGLVKGAPALSLKNSL--TPTQIPATVTSPLQQSTSIQEQSEETASQDSNSE 299

Query: 183 VAARTPPAKSSGVGSTAS-TPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDN 241
           +  RTPPAK+S +GS+AS TP    ATPI +NV A  LS AS    +LP S+SVRGV +N
Sbjct: 300 IGPRTPPAKNSVIGSSASSTPTGSHATPIPLNVSAHNLS-ASPAPTILPSSTSVRGVLEN 358

Query: 242 TGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD---VRVMGRGGLSSQPSSSIPLSSA 298
            G   SSP VN++SS KEE++ +FPGRRSSP+L +   VR +GRG  SSQPS+S+PLSS 
Sbjct: 359 AGTAISSP-VNVSSSAKEEEIASFPGRRSSPALVETGLVRGIGRGVPSSQPSTSVPLSSG 417

Query: 299 TAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTG 358
             +PSNG LGAVP  +D++KR+ LGA+ERLG  GMVQ LVSPLSNRMIL Q AK NDGTG
Sbjct: 418 ITIPSNGGLGAVPSANDMSKRSTLGADERLGGGGMVQPLVSPLSNRMILPQTAKTNDGTG 477

Query: 359 SIDSNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQR 416
             DS++ GE   +AGRVF+PS+  GMQWR G+SFQNQNE GQFRGRTEI  DQ+EKFLQR
Sbjct: 478 LADSSSVGEAAVIAGRVFSPSVVPGMQWRPGSSFQNQNESGQFRGRTEITLDQKEKFLQR 537

Query: 417 LQQVQQQGHSNLLGMP--LGGN-KQFSSQQ-NPLLQQFNSQGSSISAQAGLGLGVQAPGM 472
           LQQVQQQ  S +LGMP   GGN KQFS+QQ NPLLQQFNSQ SS+S Q GLG+GVQAPG+
Sbjct: 538 LQQVQQQTQSTILGMPPLSGGNHKQFSAQQQNPLLQQFNSQSSSVSPQVGLGVGVQAPGL 597

Query: 473 NSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSP 532
           N+VTSA++QQQP  IHQQS+QQ L+S G KDADV H+K E+ QQ QN+ ++ST ESA S 
Sbjct: 598 NTVTSAAIQQQPGSIHQQSNQQALLSTGPKDADVGHVKAEDQQQQQNVSDDSTMESAPS- 656

Query: 533 GLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGR 592
            LGKNL++EDDLKAPYA+D+S GVS SLTEP+QV RDTDLSPGQP+QS+QPSG LGVIGR
Sbjct: 657 SLGKNLMNEDDLKAPYAMDTSAGVSGSLTEPSQVPRDTDLSPGQPVQSNQPSGSLGVIGR 716

Query: 593 RSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVT 652
           RS+SDLGAIGD+LSG+ V+SGGMHDQ+YN+QMLE+AFYKLPQPKDSERAR+Y PRHPAVT
Sbjct: 717 RSISDLGAIGDTLSGSAVNSGGMHDQLYNLQMLEAAFYKLPQPKDSERARNYTPRHPAVT 776

Query: 653 PPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHR 712
           PPSYPQVQAPIV+NPAFWERL LD++GTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHR
Sbjct: 777 PPSYPQVQAPIVNNPAFWERLGLDTFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHR 836

Query: 713 KYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELI 772
           KYNTWFQRHEEPKVA DEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELI
Sbjct: 837 KYNTWFQRHEEPKVATDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELI 896

Query: 773 V 773
           V
Sbjct: 897 V 897

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255568948|ref|XP_002525444.1| conserved hypothetical protein [Ricinus communis] gi|223535257|gb|EEF36934.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359481840|ref|XP_003632676.1| PREDICTED: uncharacterized protein LOC100253711 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224125888|ref|XP_002319700.1| predicted protein [Populus trichocarpa] gi|222858076|gb|EEE95623.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224144772|ref|XP_002325409.1| predicted protein [Populus trichocarpa] gi|222862284|gb|EEE99790.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356560386|ref|XP_003548473.1| PREDICTED: uncharacterized protein LOC100783415 [Glycine max] Back     alignment and taxonomy information
>gi|449446768|ref|XP_004141143.1| PREDICTED: uncharacterized protein LOC101206210 [Cucumis sativus] gi|449509538|ref|XP_004163617.1| PREDICTED: uncharacterized LOC101206210 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356559538|ref|XP_003548056.1| PREDICTED: uncharacterized protein LOC100819202 [Glycine max] Back     alignment and taxonomy information
>gi|356571684|ref|XP_003554004.1| PREDICTED: uncharacterized protein LOC100785965 [Glycine max] Back     alignment and taxonomy information
>gi|357508635|ref|XP_003624606.1| CCR4-NOT transcription complex subunit [Medicago truncatula] gi|124365585|gb|ABN09819.1| Not CCR4-Not complex component, N-terminal; tRNA-binding arm [Medicago truncatula] gi|355499621|gb|AES80824.1| CCR4-NOT transcription complex subunit [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query773
TAIR|locus:2172389845 AT5G18230 [Arabidopsis thalian 0.354 0.324 0.539 1.1e-150
UNIPROTKB|O75175753 CNOT3 "CCR4-NOT transcription 0.181 0.185 0.542 3.4e-61
UNIPROTKB|F6XXD6753 CNOT3 "Uncharacterized protein 0.181 0.185 0.542 5.5e-61
FB|FBgn0033029844 l(2)NC136 "lethal (2) NC136" [ 0.179 0.164 0.549 1.5e-60
MGI|MGI:2385261751 Cnot3 "CCR4-NOT transcription 0.181 0.186 0.542 2.7e-60
UNIPROTKB|E1BCS1744 CNOT3 "Uncharacterized protein 0.181 0.188 0.542 4.1e-60
RGD|1304771751 Cnot3 "CCR4-NOT transcription 0.181 0.186 0.542 7.2e-60
UNIPROTKB|E2R344710 CNOT3 "Uncharacterized protein 0.179 0.195 0.535 2e-59
DICTYBASE|DDB_G0272056866 DDB_G0272056 "putative CCR4-NO 0.186 0.166 0.528 2.1e-59
ZFIN|ZDB-GENE-040927-6901 cnot3a "CCR4-NOT transcription 0.181 0.155 0.522 1.1e-57
TAIR|locus:2172389 AT5G18230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 775 (277.9 bits), Expect = 1.1e-150, Sum P(2) = 1.1e-150
 Identities = 156/289 (53%), Positives = 189/289 (65%)

Query:   487 IHQQSSQQTLMSGGQKD-ADVSHLKVXXXXXXXXXXXXXXXXXXXXXGLGKNLIHEDDLK 545
             + QQS+  +   G Q   ADV H++                         K +  EDD K
Sbjct:   570 LQQQSNAMSQQLGQQPSVADVDHVR------NDDQSQQNLPDDSASIAASKAIQSEDDSK 623

Query:   546 APYAIDSSTGVSASLTEPAQVVRDTDXXXXXXXXXXXXXXXXXVIGRRSVSDLGAIGDSL 605
               +  D+ +G+ + + +P QV    D                 VIGRRS S+LGAIGD  
Sbjct:   624 VLF--DTPSGMPSYMLDPVQVSSGPDFSPGQPIQPGQSSSSLGVIGRRSNSELGAIGDP- 680

Query:   606 SGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS 665
               + V  G MHDQM+N+QMLE+AFYK PQP DSER R Y PR+PA+TP ++PQ QAPI++
Sbjct:   681 --SAV--GPMHDQMHNLQMLEAAFYKRPQPSDSERPRPYSPRNPAITPQTFPQTQAPIIN 736

Query:   666 NPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPK 725
             NP  WERL  D+YGTDTLFFAFYYQQN+YQQYLAAKELKKQSWRYHRK+NTWFQRH+EPK
Sbjct:   737 NPLLWERLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWFQRHKEPK 796

Query:   726 VANDEFEQGTYVYFDFHIANDDLQHG-WCQRIKTEFTFEYNYLEDELIV 773
             +A DE+EQG YVYFDF    D+ Q G WCQRIK EFTFEY+YLEDEL+V
Sbjct:   797 IATDEYEQGAYVYFDFQTPKDENQEGGWCQRIKNEFTFEYSYLEDELVV 845
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS
UNIPROTKB|O75175 CNOT3 "CCR4-NOT transcription complex subunit 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F6XXD6 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0033029 l(2)NC136 "lethal (2) NC136" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:2385261 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BCS1 CNOT3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1304771 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R344 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0272056 DDB_G0272056 "putative CCR4-NOT complex subunit 3" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040927-6 cnot3a "CCR4-NOT transcription complex, subunit 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query773
pfam04153131 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family 2e-57
COG5665548 COG5665, NOT5, CCR4-NOT transcriptional regulation 1e-32
pfam04065233 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not 3e-31
COG5665548 COG5665, NOT5, CCR4-NOT transcriptional regulation 1e-16
COG5601172 COG5601, CDC36, General negative regulator of tran 9e-16
>gnl|CDD|217931 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family Back     alignment and domain information 
 Score =  191 bits (487), Expect = 2e-57
 Identities = 66/146 (45%), Positives = 84/146 (57%), Gaps = 17/146 (11%)

Query: 625 LESAFYKLPQPKDS-ERARSY-IPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT 682
           L  +F   P P D+ ER   Y IP     TP SYPQ   P   +P+ +++        +T
Sbjct: 1   LHPSFASPPSPSDARERPPQYDIPECYLNTPSSYPQNPPP--LSPSKFQKFD-----DET 53

Query: 683 LFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFH 742
           LF+ FYY     QQYLAAKELK + WRYH+KY TWF RHEEPKV  DE+E+G+Y+YFD  
Sbjct: 54  LFYIFYYMPGDLQQYLAAKELKNRGWRYHKKYQTWFTRHEEPKVITDEYERGSYIYFDPE 113

Query: 743 IANDDLQHGWCQRIKTEFTFEYNYLE 768
                    W +R K  FT +Y+ LE
Sbjct: 114 S--------WKKRRKENFTLDYSDLE 131

NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5. Length = 131
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information
>gnl|CDD|217869 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not complex component Back     alignment and domain information
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information
>gnl|CDD|227888 COG5601, CDC36, General negative regulator of transcription subunit [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 773
KOG2150575 consensus CCR4-NOT transcriptional regulation comp 100.0
COG5665548 NOT5 CCR4-NOT transcriptional regulation complex, 100.0
PF04153134 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR 100.0
PF04065233 Not3: Not1 N-terminal domain, CCR4-Not complex com 100.0
COG5601172 CDC36 General negative regulator of transcription 99.97
KOG2151312 consensus Predicted transcriptional regulator [Tra 99.47
KOG2151 312 consensus Predicted transcriptional regulator [Tra 99.23
PF03357171 Snf7: Snf7; InterPro: IPR005024 This is a family o 95.89
KOG2911439 consensus Uncharacterized conserved protein [Funct 94.57
PTZ00446191 vacuolar sorting protein SNF7-like; Provisional 92.96
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 92.17
PTZ00464211 SNF-7-like protein; Provisional 91.9
PHA0042588 DNA packaging protein, small subunit 90.74
PF1112382 DNA_Packaging_2: DNA packaging protein ; InterPro: 89.82
PF01544292 CorA: CorA-like Mg2+ transporter protein; InterPro 89.2
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 88.58
KOG1656221 consensus Protein involved in glucose derepression 87.72
KOG1655218 consensus Protein involved in vacuolar protein sor 83.76
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2e-68  Score=585.17  Aligned_cols=144  Identities=53%  Similarity=0.978  Sum_probs=140.3

Q ss_pred             CcccccchhhhhHHHhhcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChhHHhhhccCCCCCcceEEEeecCCCc
Q 004110          614 GMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNT  693 (773)
Q Consensus       614 ~~~~~~LNLnslE~ly~tFpsPwDsep~r~y~Pr~P~~tP~cYpq~p~P~L~np~lfeK~Ki~kf~~ETLFYIFY~~PgD  693 (773)
                      +++++...+-++|.++..++.|.|.+.++.|.|++|+.+|.+|++++++.++...+|+|     |+.|||||||||++|+
T Consensus       431 ~~~e~i~~~~~~e~a~~~~~~psdsE~pq~y~pk~p~~tp~~~~q~~~~~~ds~~~~~r-----l~~dTLFfiFY~~qgt  505 (575)
T KOG2150|consen  431 ITNEQIRFLYALEAACKLVPIPSDSEKPQGYLPKTPLPTPSYFPQTPPSLTDSTEITER-----LDPDTLFFIFYYQQGT  505 (575)
T ss_pred             ccccccchHHHHHhhhccCCCCchhhcccCCCCCCCCCCCccCCCCCCcccchhhHHhh-----ccccceeeEEeeecch
Confidence            67999999999999999999999999999999999999999999999999999999999     9999999999999999


Q ss_pred             HHHHHHHHHHhhcccccccccceeeeccCCCcccCCcceeEEEEEeccccCccccccccccccccCeeeechhhhhh
Q 004110          694 YQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE  770 (773)
Q Consensus       694 ~~Ql~AA~EL~~RgWRYHKk~k~Wf~R~~eP~v~T~~yErGsY~yFD~~~~~d~~~~~W~qr~K~eFtfeY~~LE~~  770 (773)
                      ++|++||+||++|+||||++|.+||+|+.||+.+|+.||+|+|+|||+.        .||+|.|.+|+|+|.|||+.
T Consensus       506 ~eQylAaKeLkk~sWrfhkky~tWFqR~~EpK~itd~~E~G~y~yFD~~--------~W~qrkK~dFtfeY~yLE~~  574 (575)
T KOG2150|consen  506 YEQYLAAKELKKRSWRFHKKYTTWFQRHEEPKNITDIYEQGDYRYFDYK--------DWSQRKKIDFTFEYQYLEDS  574 (575)
T ss_pred             HHHHHHHHHHhhcceeEeecceeEeeeccCccchhhhhhcCceEEEehh--------HhhhhhccceeeehhhccCC
Confidence            9999999999999999999999999999999999999999999999995        89999999999999999985

>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information
>PF04153 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR007282 NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes Back     alignment and domain information
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [] Back     alignment and domain information
>COG5601 CDC36 General negative regulator of transcription subunit [Transcription] Back     alignment and domain information
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7 Back     alignment and domain information
>KOG2911 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information
>PTZ00464 SNF-7-like protein; Provisional Back     alignment and domain information
>PHA00425 DNA packaging protein, small subunit Back     alignment and domain information
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages Back     alignment and domain information
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ] Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query773
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.8 bits (123), Expect = 8e-07
 Identities = 72/528 (13%), Positives = 144/528 (27%), Gaps = 125/528 (23%)

Query: 313 VSDVAKRNILGAEER---LGSSGMVQSLVSPLSNRMILSQAAKGNDGT----GSIDSNNA 365
           V D   ++IL  EE    + S   V         R+  +  +K  +        +   N 
Sbjct: 38  VQD-MPKSILSKEEIDHIIMSKDAVSGT-----LRLFWTLLSKQEEMVQKFVEEVLRINY 91

Query: 366 GETV-AMAGRVFTPSMGMQW--RTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQ 422
              +  +      PSM  +      +   N N+   F            K  Q L +++ 
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--FAKYNVSRLQPYLKLRQALLELRP 149

Query: 423 QGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQ 482
             +  + G+ LG  K                 + ++    L   VQ             +
Sbjct: 150 AKNVLIDGV-LGSGK-----------------TWVALDVCLSYKVQ------------CK 179

Query: 483 QPNPIH-----QQSSQQTLMSGGQK-DADVSHLKVEEPQQPQNLPEESTPESA------- 529
               I        +S +T++   QK    +            N+       S        
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI--HSIQAELRRL 237

Query: 530 -SSPGLGKNLIHEDDLKAPYAIDS--------STGVSASLTEPAQVVRDTDLSPGQPLQS 580
             S      L+   +++   A ++         T     +T+       T +S      +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 581 SQPSGGLGVIGR---RSVSDL---------GAIGDSLSGATVSSGGMHDQMYNMQMLE-- 626
             P     ++ +       DL           +  S+   ++  G      +     +  
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKL 355

Query: 627 ----SAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT 682
                +   + +P +  R   +     +V PPS      P +     W  +         
Sbjct: 356 TTIIESSLNVLEPAE-YRKM-F--DRLSVFPPS---AHIPTILLSLIWFDVIKSDVMVVV 408

Query: 683 LFFAFY------YQQNTYQ---QYLAAKELKKQSWRYHRK----YNTW--FQRHEEPKVA 727
                Y       +++T      YL  K   +  +  HR     YN    F   +     
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 728 NDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFT---FEYNYLEDELI 772
            D++    Y +   H+ N +          T F     ++ +LE ++ 
Sbjct: 469 LDQY---FYSHIGHHLKNIEHPERM-----TLFRMVFLDFRFLEQKIR 508
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00