Citrus Sinensis ID: 004114
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 773 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SUU7 | 537 | Pentatricopeptide repeat- | yes | no | 0.623 | 0.897 | 0.477 | 1e-128 | |
| Q680H3 | 615 | Pentatricopeptide repeat- | no | no | 0.508 | 0.639 | 0.544 | 1e-127 | |
| Q8S8Q7 | 469 | Pentatricopeptide repeat- | no | no | 0.525 | 0.865 | 0.450 | 1e-104 | |
| Q9C6G2 | 475 | Pentatricopeptide repeat- | no | no | 0.510 | 0.831 | 0.453 | 1e-102 | |
| Q9ZQE5 | 579 | Pentatricopeptide repeat- | no | no | 0.474 | 0.633 | 0.399 | 9e-88 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.504 | 0.499 | 0.382 | 7e-85 | |
| Q9FIB2 | 995 | Putative pentatricopeptid | no | no | 0.531 | 0.413 | 0.386 | 3e-82 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.507 | 0.461 | 0.382 | 3e-82 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.507 | 0.476 | 0.383 | 6e-82 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.423 | 0.416 | 0.431 | 3e-81 |
| >sp|Q9SUU7|PP346_ARATH Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust.
Identities = 243/509 (47%), Positives = 321/509 (63%), Gaps = 27/509 (5%)
Query: 281 NGNCMQDTGQHQQALSGHYSGN---FGIHQNSPSFYQQDQNGGQYQWDQSRRQYQQNPNE 337
NGN M ++ H ++G G G QNS Y+Q N Q + + R YQ N
Sbjct: 40 NGNPMDNSSHHIGYVNGFNGGEQSLGGFQQNS---YEQSLNPVSGQ-NPTNRFYQNGYNR 95
Query: 338 GQ-YQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNG------------TLEQLDG 384
Q Y +S I Q + C N G +L++LD
Sbjct: 96 NQSYGEHSEIINQRNQNWQSSDGCSSYGTTGNGVPQENNTGGNHFQQDHSGHSSLDELDS 155
Query: 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR 444
+ +EGKVK+A+E++ + VDLP + Q CGDA+AL+EAK VHE + +
Sbjct: 156 ICREGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQLCGDAQALQEAKVVHEFITSSVGISD 215
Query: 445 VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504
+S YN I++MYS C S++DA +VF++M ER+L +W +I FAKNG GEDA+D FS+FKQ
Sbjct: 216 ISAYNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCFAKNGQGEDAIDTFSRFKQ 275
Query: 505 AGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564
G KPD ++F +F AC LGD+ EG+LHFESM K+YGI+P M+HYVS+V ML GYLD
Sbjct: 276 EGNKPDGEMFKEIFFACGVLGDMNEGLLHFESMYKEYGIIPCMEHYVSLVKMLAEPGYLD 335
Query: 565 EALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVPV 624
EAL F+E MEP+VD+WE LMNL R+HG+L LGDRC ++VEQLD SRLN++SKAGLVPV
Sbjct: 336 EALRFVES--MEPNVDLWETLMNLSRVHGDLILGDRCQDMVEQLDASRLNKESKAGLVPV 393
Query: 625 NASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIP 684
+S+L KEK + N + AGD S PE ++Y ++ L+ M E GY+P
Sbjct: 394 KSSDLVKEKLQRMAKGPNY-----GIRYMAAGDISRPENRELYMALKSLKEHMIEIGYVP 448
Query: 685 ETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKIIS 744
++ LHD+DQE K+E L H+ER A L +PAR+ IR+MKNLRVC DCH+ALK++S
Sbjct: 449 LSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKLMS 508
Query: 745 KIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
KIVGRELI RDAKRFHH KDG+CSCR+YW
Sbjct: 509 KIVGRELISRDAKRFHHMKDGVCSCREYW 537
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q680H3|PP170_ARATH Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust.
Identities = 215/395 (54%), Positives = 288/395 (72%), Gaps = 2/395 (0%)
Query: 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVER 438
+E+ D K GKVK+A+ + +L VDL +L + CG+A+ L+EAK VH +
Sbjct: 223 IEEYDAFCKHGKVKKALYTIDILASMNYVVDLSRLLRLAKICGEAEGLQEAKTVHGKISA 282
Query: 439 LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDI 498
+S L +S+ + +L+MYS C ++A SVF M+E++L +W +I FAKNG GEDA+D+
Sbjct: 283 SVSHLDLSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDM 342
Query: 499 FSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG 558
FS+FK+ G PD Q+F G+F AC LGDV EG+LHFESMS+DYGI PS++ YVS+V+M
Sbjct: 343 FSRFKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSRDYGIAPSIEDYVSLVEMYA 402
Query: 559 STGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSK 618
G+LDEALEF+E+MPMEP+VDVWE LMNL R+HGNLELGD CAE+VE LDP+RLN++S+
Sbjct: 403 LPGFLDEALEFVERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFLDPTRLNKQSR 462
Query: 619 AGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMK 678
G +PV AS++ EKE+ K S L V+S + E+RAGDT+ PE D+++ L+R L+ M
Sbjct: 463 EGFIPVKASDV--EKESLKKRSGILHGVKSSMQEFRAGDTNLPENDELFQLLRNLKMHMV 520
Query: 679 EAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHS 738
E GY+ ETR LHDIDQE KE LL HSER+A + +L+S R P ++KNLRVC DCH+
Sbjct: 521 EVGYVAETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHN 580
Query: 739 ALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
ALKI+S IVGRE+I RD KRFH K+G C+C+DYW
Sbjct: 581 ALKIMSDIVGREVITRDIKRFHQMKNGACTCKDYW 615
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8S8Q7|PP183_ARATH Pentatricopeptide repeat-containing protein At2g34370, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H25 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/415 (45%), Positives = 285/415 (68%), Gaps = 9/415 (2%)
Query: 360 CKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQA 419
C+ +A+ + Q+ T+E D L K+ K++EA+EV+ +LE + VD P L +
Sbjct: 63 CRRVSSYAQMVNNHQS-VTIETFDALCKQVKIREALEVIDILEDKGYIVDFPRLLGLAKL 121
Query: 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSW 479
CG+ +ALEEA+ VH+ + +PL +Y+ +++MYS C S DDA +VF+ M +R+ +W
Sbjct: 122 CGEVEALEEARVVHDCI----TPLDARSYHTVIEMYSGCRSTDDALNVFNEMPKRNSETW 177
Query: 480 DTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK 539
TMI AKNG GE A+D+F++F + G KPD +IF VF AC ++GD+ EG+LHFESM +
Sbjct: 178 GTMIRCLAKNGEGERAIDMFTRFIEEGNKPDKEIFKAVFFACVSIGDINEGLLHFESMYR 237
Query: 540 DYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGD 599
DYG+V SM+ YV++++ML + G+LDEAL+F+E+M +EP V++WE LMNLC + G LELGD
Sbjct: 238 DYGMVLSMEDYVNVIEMLAACGHLDEALDFVERMTVEPSVEMWETLMNLCWVQGYLELGD 297
Query: 600 RCAEIVEQLDPSRLNEKSKAGLVPVNASELAKEKENKKLASQNLL-EVRSKVHEYRAGDT 658
R AE++++LD SR++++S AGLV AS+ A EK + Q + + + ++HE+RAGDT
Sbjct: 298 RFAELIKKLDASRMSKESNAGLVAAKASDSAMEKLKELRYCQMIRDDPKKRMHEFRAGDT 357
Query: 659 SHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSS 718
SH T + R L+ QM + G++P TR +++E KEE LL S +LA +H +++S
Sbjct: 358 SHLGTVSAF---RSLKVQMLDIGFVPATRVCFVTVEEEEKEEQLLFRSNKLAFAHAIINS 414
Query: 719 PARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
AR P+ +++N+R C D H+ K+IS I GR LI RD K++H +K+G+CSC+DYW
Sbjct: 415 EARRPLTVLQNMRTCIDGHNTFKMISLITGRALIQRDKKKYHFYKNGVCSCKDYW 469
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C6G2|PPR63_ARATH Pentatricopeptide repeat-containing protein At1g29710, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H67 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/408 (45%), Positives = 264/408 (64%), Gaps = 13/408 (3%)
Query: 369 ASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEE 428
S S N T+E D L +G +EA+EVL LE + ++DL L + CG +ALE
Sbjct: 78 VSPSVAQNVTIETFDSLCIQGNWREAVEVLDYLENKGYAMDLIRLLGLAKLCGKPEALEA 137
Query: 429 AKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAK 488
A+ VHE + L+SP V N I++MYS C S+DDA VF M E + + M+ F
Sbjct: 138 ARVVHECIIALVSPCDVGARNAIIEMYSGCCSVDDALKVFEEMPEWNSGTLCVMMRCFVN 197
Query: 489 NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMK 548
NG GE+A+D+F++FK+ G KP+ +IF VFS C+ GDV EG L F++M ++YGIVPSM+
Sbjct: 198 NGYGEEAIDLFTRFKEEGNKPNGEIFNQVFSTCTLTGDVKEGSLQFQAMYREYGIVPSME 257
Query: 549 HYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608
HY S+ ML ++G+LDEAL F+E+MPMEP VDVWE LMNL R+HG++ELGDRCAE+VE+L
Sbjct: 258 HYHSVTKMLATSGHLDEALNFVERMPMEPSVDVWETLMNLSRVHGDVELGDRCAELVEKL 317
Query: 609 DPSRLNEKSKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHEY---RAGDTSHPETDK 665
D +RL++ S AGLV AS+ K++ + RS+ + Y R D+SHP+ +
Sbjct: 318 DATRLDKVSSAGLVATKASDFVKKEPS----------TRSEPYFYSTFRPVDSSHPQMNI 367
Query: 666 IYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIR 725
IY + LR+Q+KE GY+P+TR+ I +E + + E +AV LL S R+ I
Sbjct: 368 IYETLMSLRSQLKEMGYVPDTRYYRSLIMAMENKEQIFGYREEIAVVESLLKSKPRSAIT 427
Query: 726 IMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
++ N+R+ GDCH +K++S I GR++I RDAK +H FK+G+C C + W
Sbjct: 428 LLTNIRIVGDCHDMMKLMSVITGRDMIKRDAKIYHLFKNGVCRCNNLW 475
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQE5|PP153_ARATH Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 325 bits (833), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 160/401 (39%), Positives = 248/401 (61%), Gaps = 34/401 (8%)
Query: 378 TLEQLDGLVKEGKVKEAIEVL---GLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHE 434
++E++ L + K+AIE+L + +++C F L ++C + K+LE +K VH+
Sbjct: 208 SVEEVMRLCQRRLYKDAIELLDKGAMPDREC-------FVLLFESCANLKSLEHSKKVHD 260
Query: 435 HVERLLSPLR--VSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLG 492
H L S R N ++ M+ EC S+ DA VF +M ++D+ SW M+ ++ NG+G
Sbjct: 261 HF--LQSKFRGDPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMG 318
Query: 493 EDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVS 552
+DA+ +F + + GLKP+++ F+ VF AC+ +G + E LHF+SM ++GI P +HY+
Sbjct: 319 DDALHLFEEMTKHGLKPNEETFLTVFLACATVGGIEEAFLHFDSMKNEHGISPKTEHYLG 378
Query: 553 IVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612
++ +LG G+L EA ++I +P EP D WE + N R+HG+++L D E++ +DPS
Sbjct: 379 VLGVLGKCGHLVEAEQYIRDLPFEPTADFWEAMRNYARLHGDIDLEDYMEELMVDVDPS- 437
Query: 613 LNEKSKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRG 672
K+ +P + KE N++ +S++ E+R E ++
Sbjct: 438 ---KAVINKIPTPPPKSFKET--------NMVTSKSRILEFRNLTFYKDEAKEM------ 480
Query: 673 LRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRV 732
A K Y+P+TRFVLHDIDQE KE+ALL HSERLA+++G++ +P R + I+KNLRV
Sbjct: 481 --AAKKGVVYVPDTRFVLHDIDQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRV 538
Query: 733 CGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
CGDCH+ +KI+SKI+GR LI+RD KRFHHFKDG CSC DYW
Sbjct: 539 CGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKDGKCSCGDYW 579
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (808), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 154/403 (38%), Positives = 242/403 (60%), Gaps = 13/403 (3%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
+ G + G EA+ + +E++ ++ +FS + C D ALE K +H + +
Sbjct: 381 IAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGY 440
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
N +L MY +C S+++A +F M +D+ SW+TMI G++++G GE A+ F
Sbjct: 441 ETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFES 500
Query: 502 FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG 561
K+ GLKPDD + V SACS G V +G +F +M++DYG++P+ +HY +VD+LG G
Sbjct: 501 MKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAG 560
Query: 562 YLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGL 621
L++A ++ MP EPD +W L+ R+HGN EL + A+ + ++P N L
Sbjct: 561 LLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPE--NSGMYVLL 618
Query: 622 VPVNASE-----------LAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALI 670
+ AS ++K KK+ + +E+++K H + GD HPE D+I+A +
Sbjct: 619 SNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFL 678
Query: 671 RGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNL 730
L +MK+AGY+ +T VLHD+++E KE + HSERLAV++G++ + PIR++KNL
Sbjct: 679 EELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNL 738
Query: 731 RVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
RVC DCH+A+K +++I GR +I+RD RFHHFKDG CSC DYW
Sbjct: 739 RVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (786), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 164/424 (38%), Positives = 248/424 (58%), Gaps = 13/424 (3%)
Query: 363 EDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGD 422
E F+ + N + G + + +A++++ + + +D ++ ++ A
Sbjct: 572 EKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFAS 631
Query: 423 AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTM 482
LE VH R V + ++ MYS+C +D A F+ M R+ SW++M
Sbjct: 632 VATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSM 691
Query: 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQI-FIGVFSACSALGDVVEGMLHFESMSKDY 541
I+G+A++G GE+A+ +F K G P D + F+GV SACS G + EG HFESMS Y
Sbjct: 692 ISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSY 751
Query: 542 GIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMN-LCRMHG-NLELGD 599
G+ P ++H+ + D+LG G LD+ +FIEKMPM+P+V +W ++ CR +G ELG
Sbjct: 752 GLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGK 811
Query: 600 RCAEIVEQLDPSRLNEKSKAGLV---------PVNASELAKEKENKKLASQNLLEVRSKV 650
+ AE++ QL+P G + V A + K+ + KK A + + ++ V
Sbjct: 812 KAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGV 871
Query: 651 HEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLA 710
H + AGD SHP+ D IY ++ L +M++AGY+P+T F L+D++QE KEE L HSE+LA
Sbjct: 872 HMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLA 931
Query: 711 VSHGLLSS-PARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSC 769
V+ L + + PIRIMKNLRVCGDCHSA K ISKI GR++I+RD+ RFHHF+DG CSC
Sbjct: 932 VAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSC 991
Query: 770 RDYW 773
D+W
Sbjct: 992 SDFW 995
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (786), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 155/405 (38%), Positives = 238/405 (58%), Gaps = 13/405 (3%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
LDG + ++A ++L + ++ + V TF+ L+ + ++ + + +H V +L
Sbjct: 446 LDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGL 505
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
N ++ MYS+C S+D A VF+ M R++ SW +MITGFAK+G ++ F+Q
Sbjct: 506 SCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQ 565
Query: 502 FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG 561
+ G+KP++ ++ + SACS +G V EG HF SM +D+ I P M+HY +VD+L G
Sbjct: 566 MIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAG 625
Query: 562 YLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGL 621
L +A EFI MP + DV VW + CR+H N ELG A + +LDP+ +
Sbjct: 626 LLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSN 685
Query: 622 VPVNASELAKEKE-NKKLASQNL--------LEVRSKVHEYRAGDTSHPETDKIYALIRG 672
+ A + + E +K+ +NL +EV K+H++ GDT+HP +IY +
Sbjct: 686 IYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDR 745
Query: 673 LRAQMKEAGYIPETRFVLHDI----DQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMK 728
L ++K GY+P+T VLH + D+ KE L HSE++AV+ GL+S+ P+R+ K
Sbjct: 746 LITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFK 805
Query: 729 NLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
NLRVCGDCH+A+K IS + GRE+++RD RFHHFKDG CSC DYW
Sbjct: 806 NLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 306 bits (783), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 154/402 (38%), Positives = 240/402 (59%), Gaps = 10/402 (2%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQC-ISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
+ G + G EAIE+ ++E++ I+ + T+ ++ AC A AL + +H + +
Sbjct: 422 ISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNG 481
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500
L V + MY +C ++DA S+F + + W+T+I +G GE AV +F
Sbjct: 482 LYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFK 541
Query: 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560
+ G+KPD F+ + SACS G V EG FE M DYGI PS+KHY +VDM G
Sbjct: 542 EMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRA 601
Query: 561 GYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAG 620
G L+ AL+FI+ M ++PD +W L++ CR+HGN++LG +E + +++P +
Sbjct: 602 GQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLS 661
Query: 621 LVPVNASE---------LAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIR 671
+ +A + +A K +K + +EV +KV + G+ +HP +++Y +
Sbjct: 662 NMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELT 721
Query: 672 GLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLR 731
L+A++K GY+P+ RFVL D++ + KE L++HSERLA++ L+++PA+ IRI KNLR
Sbjct: 722 ALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLR 781
Query: 732 VCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
VCGDCHS K ISKI RE+I+RD+ RFHHFK+G+CSC DYW
Sbjct: 782 VCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (776), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 147/341 (43%), Positives = 220/341 (64%), Gaps = 14/341 (4%)
Query: 445 VSTYNGILKMYSECDSMDDAFSVFSNM-TERDLTSWDTMITGFAKNGLGEDAVDIFSQFK 503
VS N ++ MY++ ++ A F + ERD SW +MI A++G E+A+++F
Sbjct: 448 VSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETML 507
Query: 504 QAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYL 563
GL+PD ++GVFSAC+ G V +G +F+ M I+P++ HY +VD+ G G L
Sbjct: 508 MEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLL 567
Query: 564 DEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVP 623
EA EFIEKMP+EPDV W L++ CR+H N++LG AE + L+P N + + L
Sbjct: 568 QEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPE--NSGAYSALAN 625
Query: 624 VNAS-----ELAKEKEN------KKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRG 672
+ ++ E AK +++ KK + +EV+ KVH + D +HPE ++IY ++
Sbjct: 626 LYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKK 685
Query: 673 LRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRV 732
+ ++K+ GY+P+T VLHD+++E KE+ L HSE+LA++ GL+S+P + +RIMKNLRV
Sbjct: 686 IWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRV 745
Query: 733 CGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
C DCH+A+K ISK+VGRE+I+RD RFHHFKDG CSCRDYW
Sbjct: 746 CNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 773 | ||||||
| 225430210 | 807 | PREDICTED: pentatricopeptide repeat-cont | 0.961 | 0.920 | 0.569 | 0.0 | |
| 147856667 | 1148 | hypothetical protein VITISV_020760 [Viti | 0.959 | 0.646 | 0.569 | 0.0 | |
| 356510940 | 664 | PREDICTED: pentatricopeptide repeat-cont | 0.774 | 0.902 | 0.568 | 0.0 | |
| 296082000 | 676 | unnamed protein product [Vitis vinifera] | 0.825 | 0.943 | 0.499 | 0.0 | |
| 449485419 | 731 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.926 | 0.979 | 0.486 | 0.0 | |
| 356528308 | 664 | PREDICTED: pentatricopeptide repeat-cont | 0.778 | 0.906 | 0.551 | 0.0 | |
| 449449711 | 671 | PREDICTED: pentatricopeptide repeat-cont | 0.862 | 0.994 | 0.490 | 0.0 | |
| 49533766 | 741 | Putative selenium-binding protein, relat | 0.915 | 0.955 | 0.465 | 1e-178 | |
| 255578133 | 548 | pentatricopeptide repeat-containing prot | 0.560 | 0.790 | 0.648 | 1e-162 | |
| 357487235 | 768 | Pentatricopeptide repeat protein [Medica | 0.460 | 0.463 | 0.677 | 1e-157 |
| >gi|225430210|ref|XP_002282464.1| PREDICTED: pentatricopeptide repeat-containing protein At2g25580 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/837 (56%), Positives = 574/837 (68%), Gaps = 94/837 (11%)
Query: 1 MSRSTASFLTIRSLTALSKV-SSSLTSCDSTKTLYLLKNLSTAIERFDFQNPNGYYEDDS 59
MS A+ LTI SLTALSKV S +S S+KTL LLKNLSTA ER DFQ NG+ +++S
Sbjct: 1 MSAKRATLLTINSLTALSKVCPSPNSSSASSKTLTLLKNLSTAAERADFQISNGFQKENS 60
Query: 60 FQNDQHPNGF-CTEQSSVDFQQKPN-----------------------EHGLNPNGGFTE 95
+N Q+P+GF Q+ ++FQQKPN + +NPNGGF E
Sbjct: 61 PENHQNPDGFDADNQNHIEFQQKPNGQSPGGYFSGSPQGFYGGNSVEAQQSINPNGGFEE 120
Query: 96 RRVNDYWDNPLRQNGNC-GFYGQNHGGLKQNRID----NCQKAS--------GGYRESFS 142
N++ NP+ QN N G+ GQN L+QN N +S GYRE
Sbjct: 121 NLRNEFHRNPIGQNVNFNGYNGQNFRDLQQNPDGLYGGNSMNSSEVHQDLNPRGYREYAR 180
Query: 143 SEQQRNIVGENGNFKGHYRQIDGYGKQNSNGIYGESSRGFQQNSNEFYQHHAGVNSESHI 202
+E ++N ++GNF +YRQ G G N NE + ES I
Sbjct: 181 NEFKQNPFSQSGNFSRNYRQGSG---------------GLPANQNELCR-------ESTI 218
Query: 203 NEFQNNTFQQNGNFNDYGWYNNGQPHPNLSGAQPQMSRSGGNANVQNQYGPIHYGPGEVM 262
NE+Q N Q+GN N Y N G+ Q G N NVQN Y G EV
Sbjct: 219 NEYQQNLVGQSGNINGYCGQNYGE------SLQKSNDFYGQNRNVQNSY--YSEGRAEVN 270
Query: 263 QNRNGFNSQRFSESLGSFNGNCMQDTGQHQQALSGH---------------YSGNFGIHQ 307
QNRNG Q SE+LG N ++ Q QQ+ SG+ Y N G +Q
Sbjct: 271 QNRNGNCQQIISETLGDLNRTYGENIRQFQQSPSGYHRENLQQYQPSENMYYRENVGQYQ 330
Query: 308 NSPSF-----------YQQDQNGGQYQWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQV 356
+P+ YQQ+ N QYQ + + QYQQNPN QYQ+ S QN M+ S
Sbjct: 331 QNPNVGQYQQNPNIGQYQQNPNVAQYQQNPNVAQYQQNPNVAQYQTNSNEFQNSMVGSPK 390
Query: 357 LNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQL 416
+N K + + EA+ SSQ +GTLE++D K+GKVKEAIEVLGLLEKQ VDLP + +L
Sbjct: 391 SSNYKPDGESLEAAESSQYSGTLEEVDDFCKDGKVKEAIEVLGLLEKQHTPVDLPRYLRL 450
Query: 417 MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDL 476
M+ACG+AKAL+EAKAVHE + + +SPL+VSTYN IL+MYS+C SMDDA++VF M ER+L
Sbjct: 451 MKACGEAKALQEAKAVHESLIKSVSPLKVSTYNRILEMYSKCGSMDDAYAVFKKMPERNL 510
Query: 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFES 536
TSWDTMIT FAKN LGE+A+D+F QFK++GLKPD Q+FIGVF ACS LGDV+EGMLHF S
Sbjct: 511 TSWDTMITWFAKNDLGEEAIDLFIQFKESGLKPDGQMFIGVFMACSVLGDVIEGMLHFNS 570
Query: 537 MSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLE 596
MSKDYGIVPSMKHY S+VDMLG++GYLDEALEF+EKMP+EP VDVWE LMN+CR+ GN+E
Sbjct: 571 MSKDYGIVPSMKHYASMVDMLGNSGYLDEALEFVEKMPLEPSVDVWETLMNICRVQGNME 630
Query: 597 LGDRCAEIVEQLDPSRLNEKSKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAG 656
+GDRCAE+VE L+PSRL E+SKAGLVPV AS+L KEKE KKLASQNLLEVRS+VHEYRAG
Sbjct: 631 IGDRCAELVEHLEPSRLTEQSKAGLVPVKASDLEKEKEKKKLASQNLLEVRSRVHEYRAG 690
Query: 657 DTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLL 716
DTSHPE DKIYA +RGL+AQMKEAGY+PETRFVLHDIDQEGKEEALLAHSERLAV++GLL
Sbjct: 691 DTSHPENDKIYAKLRGLKAQMKEAGYVPETRFVLHDIDQEGKEEALLAHSERLAVAYGLL 750
Query: 717 SSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
SSPAR+PIR++KNLRVCGDCH+ALKIISK+VGRELIIRDAKRFHHFKDGLCSCRDYW
Sbjct: 751 SSPARSPIRVIKNLRVCGDCHTALKIISKLVGRELIIRDAKRFHHFKDGLCSCRDYW 807
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147856667|emb|CAN80315.1| hypothetical protein VITISV_020760 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/836 (56%), Positives = 572/836 (68%), Gaps = 94/836 (11%)
Query: 1 MSRSTASFLTIRSLTALSKV-SSSLTSCDSTKTLYLLKNLSTAIERFDFQNPNGYYEDDS 59
MS A+ LTI SLTALSKV S +S S+KTL LLKNLSTA ER DFQ NG+ +++S
Sbjct: 1 MSAKRATLLTINSLTALSKVCPSPNSSSASSKTLTLLKNLSTAAERADFQXXNGFQKENS 60
Query: 60 FQNDQHPNGF-CTEQSSVDFQQKPN-----------------------EHGLNPNGGFTE 95
+N Q+P+GF Q+ ++FQQKPN + +NPNGGF E
Sbjct: 61 PENXQNPDGFDAXNQNHIEFQQKPNGQSPGGYFSGSPQGFYGGNSVEAQQSINPNGGFEE 120
Query: 96 RRVNDYWDNPLRQNGNC-GFYGQNHGGLKQNRID----NCQKAS--------GGYRESFS 142
N++ NP QN N G+ GQN L+QN N +S GYRE
Sbjct: 121 NLRNEFHRNPXGQNVNFNGYNGQNFRDLQQNPDGLYGGNSMNSSEVHQDLNPRGYREYAR 180
Query: 143 SEQQRNIVGENGNFKGHYRQIDGYGKQNSNGIYGESSRGFQQNSNEFYQHHAGVNSESHI 202
+E ++N ++GNF +YRQ G G N NE + ES I
Sbjct: 181 NEFEQNPFSQSGNFSRNYRQGSG---------------GLPANQNELCR-------ESTI 218
Query: 203 NEFQNNTFQQNGNFNDYGWYNNGQPHPNLSGAQPQMSRSGGNANVQNQYGPIHYGPGEVM 262
NE+Q N Q+GN N Y N G+ Q G N NVQN Y G EV
Sbjct: 219 NEYQQNLVGQSGNINGYCGQNYGE------SLQKSNDFYGQNRNVQNSY--YSEGRAEVN 270
Query: 263 QNRNGFNSQRFSESLGSFNGNCMQDTGQHQQALSGH---------------YSGNFGIHQ 307
QNRNG Q SE+LG N ++ Q QQ+ SG+ Y N G +Q
Sbjct: 271 QNRNGNCQQIISETLGDLNRTYGENIRQFQQSPSGYHRENLQQYQPSENMYYRENVGQYQ 330
Query: 308 NSPSF-----------YQQDQNGGQYQWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQV 356
+P+ YQQ+ N QYQ + + QYQQNPN QYQ+ S QN M+ S
Sbjct: 331 QNPNVGQYQQNPNIGQYQQNPNVAQYQQNPNVAQYQQNPNVAQYQTNSNEFQNSMVGSPK 390
Query: 357 LNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQL 416
+N K + + EA+ SSQ +GTLE++D K+GKVKEAIEVLGLLEKQ VDLP + +L
Sbjct: 391 SSNYKPDGESLEAAESSQYSGTLEEVDDFCKDGKVKEAIEVLGLLEKQHTPVDLPRYLRL 450
Query: 417 MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDL 476
M+ACG+AKAL+EAKAVHE + + +SPL+VSTYN IL+MYS+C SMDDA++VF M ER+L
Sbjct: 451 MKACGEAKALQEAKAVHESLIKSVSPLKVSTYNRILEMYSKCGSMDDAYAVFKKMPERNL 510
Query: 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFES 536
TSWDTMIT FAKN LGE+A+D+F QFK++GLKPD Q+FIGVF ACS LGDV+EGMLHF S
Sbjct: 511 TSWDTMITWFAKNDLGEEAIDLFIQFKESGLKPDXQMFIGVFMACSVLGDVIEGMLHFNS 570
Query: 537 MSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLE 596
MSKDYGIVPSMKHY S+VDMLG++GYLDEALEF+EKMP+EP VDVWE LMN+CR+ GN+E
Sbjct: 571 MSKDYGIVPSMKHYASMVDMLGNSGYLDEALEFVEKMPLEPSVDVWETLMNICRVQGNME 630
Query: 597 LGDRCAEIVEQLDPSRLNEKSKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAG 656
+GDRCAE+VE L+PSRL E+SKAGLVPV AS+L KEKE KKLASQNLLEVRS+VHEYRAG
Sbjct: 631 IGDRCAELVEHLEPSRLTEQSKAGLVPVKASDLEKEKEKKKLASQNLLEVRSRVHEYRAG 690
Query: 657 DTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLL 716
DTSHPE DKIYA +RGL+AQMKEAGY+PETRFVLHDIDQEGKEEALLAHSERLAV++GLL
Sbjct: 691 DTSHPENDKIYAKLRGLKAQMKEAGYVPETRFVLHDIDQEGKEEALLAHSERLAVAYGLL 750
Query: 717 SSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDY 772
SSPAR+PIR++KNLRVCGDCH+ALKIISK+VGRELIIRDAKRFHHFKDGLCSCRDY
Sbjct: 751 SSPARSPIRVIKNLRVCGDCHTALKIISKLVGRELIIRDAKRFHHFKDGLCSCRDY 806
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510940|ref|XP_003524191.1| PREDICTED: pentatricopeptide repeat-containing protein At2g25580-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/640 (56%), Positives = 438/640 (68%), Gaps = 41/640 (6%)
Query: 156 FKGHYRQIDGYG-KQNSNGIYGESSRGFQQNSNEF-------YQHHAGVNSES------- 200
F G Y+ D G +QN G Y ES + +SNE Y A S
Sbjct: 44 FSGGYQNDDSSGYQQNRVGFYQESQN--KVDSNELLNKQRPDYVSQANAEQNSYGAGQIA 101
Query: 201 ---HINEFQN---NTFQQNGNFNDYGWYNNGQPHPNLSGAQPQMSRSGGNAN-VQNQYGP 253
HIN QN N NG+ N Y N + + SG +AN + ++G
Sbjct: 102 DGGHINMTQNVHNNLVGYNGSVNGYFGQGNMRMQQKVRAGVGSAWGSGMHANPLVEKHGW 161
Query: 254 IHYGPGEVMQNRNGFNSQRFSESLGSFNGNCMQDTGQHQQALSGHYSGNFGIHQNSPSFY 313
H PG+ MQ+ N + S R ES G+ G+ Q+ QQ + HY G+ + Q P
Sbjct: 162 THE-PGQKMQSPNAYGSPRPLESQGNLRGDLNQNIDHFQQPENVHYKGSHEMRQQYPG-- 218
Query: 314 QQDQNGGQYQWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSS 373
Q+QQ+ +G+Y Q + S + NN H+ + +AS S
Sbjct: 219 --------------SGQFQQSLKDGRYLPNLNIAQRSGVGSHLSNNANHDGESDKASNDS 264
Query: 374 QNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVH 433
TLE+LD EG VKEA+ VL LLEK I VDLP + QLM C + K+LEEAK VH
Sbjct: 265 PYRATLEELDNFCIEGNVKEAVNVLELLEKLHIPVDLPRYLQLMHQCAENKSLEEAKIVH 324
Query: 434 EHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGE 493
H + LSPL+VSTYN IL+MY EC S+DDA ++F+NM ER+LT+WDTMIT AKNG E
Sbjct: 325 RHTSQHLSPLQVSTYNRILEMYLECGSVDDALNIFNNMPERNLTTWDTMITQLAKNGFAE 384
Query: 494 DAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSI 553
D++D+F+QFK GLKPD Q+FIGV ACS LGD+ EGMLHFESMSKDYGIVPSM H+VS+
Sbjct: 385 DSIDLFTQFKNLGLKPDGQMFIGVLFACSVLGDIDEGMLHFESMSKDYGIVPSMTHFVSV 444
Query: 554 VDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613
VDM+GS G+LDEA EFIE+MPMEP + WE LMNLCR+HGN LGDRCAE+VEQLD SRL
Sbjct: 445 VDMIGSIGHLDEAFEFIERMPMEPSAETWETLMNLCRVHGNTGLGDRCAELVEQLDSSRL 504
Query: 614 NEKSKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGL 673
NE+SKAGLVPV AS+L KEKE K LAS+NLLEVRS+V EYRAGDTSHPE DKIYAL+RGL
Sbjct: 505 NEQSKAGLVPVKASDLTKEKEKKNLASKNLLEVRSRVREYRAGDTSHPENDKIYALLRGL 564
Query: 674 RAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVC 733
++QMKEAGY+PET+FVLHDIDQEGKEEALLAHSERLAV++GLL+SPARAP+R++KNLRVC
Sbjct: 565 KSQMKEAGYVPETKFVLHDIDQEGKEEALLAHSERLAVAYGLLNSPARAPMRVIKNLRVC 624
Query: 734 GDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
GDCH+ALKIISK+VGRELIIRDAKRFHHFKDGLCSCRDYW
Sbjct: 625 GDCHTALKIISKLVGRELIIRDAKRFHHFKDGLCSCRDYW 664
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082000|emb|CBI21005.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/811 (49%), Positives = 494/811 (60%), Gaps = 173/811 (21%)
Query: 1 MSRSTASFLTIRSLTALSKV-SSSLTSCDSTKTLYLLKNLSTAIERFDFQNPNGYYEDDS 59
MS A+ LTI SLTALSKV S +S S+KTL LLKNLSTA ER DFQ NG+ +++S
Sbjct: 1 MSAKRATLLTINSLTALSKVCPSPNSSSASSKTLTLLKNLSTAAERADFQISNGFQKENS 60
Query: 60 FQNDQHPNGFCTE-QSSVDFQQKPN-----------------------EHGLNPNGGFTE 95
+N Q+P+GF + Q+ ++FQQKPN + +NPNGGF E
Sbjct: 61 PENHQNPDGFDADNQNHIEFQQKPNGQSPGGYFSGSPQGFYGGNSVEAQQSINPNGGFEE 120
Query: 96 RRVNDYWDNPLRQNGNC-GFYGQNHGGLKQNRID----NCQKAS--------GGYRESFS 142
N++ NP+ QN N G+ GQN L+QN N +S GYRE
Sbjct: 121 NLRNEFHRNPIGQNVNFNGYNGQNFRDLQQNPDGLYGGNSMNSSEVHQDLNPRGYREYAR 180
Query: 143 SEQQRNIVGENGNFKGHYRQIDGYGKQNSNGIYGESSRGFQQNSNEFYQHHAGVNSESHI 202
+E ++N ++GNF +YRQ G G N NE + ES I
Sbjct: 181 NEFKQNPFSQSGNFSRNYRQGSG---------------GLPANQNELCR-------ESTI 218
Query: 203 NEFQNNTFQQNGNFNDYGWYNNGQPHPNLSGAQPQMSRSGGNANVQNQYGPIHYGPGEVM 262
NE+Q N Q+GN N Y N G+ Q G N NVQN Y G EV
Sbjct: 219 NEYQQNLVGQSGNINGYCGQNYGE------SLQKSNDFYGQNRNVQNSY--YSEGRAEVN 270
Query: 263 QNRNGFNSQRFSESLGSFNGNCMQDTGQHQQALSGHYSGNFGIHQNSPSFYQQDQNGGQY 322
QNRNG Q SE+LG N ++ Q QQ+ SG++ N
Sbjct: 271 QNRNGNCQQIISETLGDLNRTYGENIRQFQQSPSGYHRENL------------------- 311
Query: 323 QWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQL 382
+QYQ P+E N M+ S +N K + + EA+ SSQ +GTLE++
Sbjct: 312 ------QQYQ--PSE-----------NIMVGSPKSSNYKPDGESLEAAESSQYSGTLEEV 352
Query: 383 DGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSP 442
D K+GKVKEAIEVLGLLEKQ VDLP + +LM+ACG+AKAL+EAKAVHE + + +SP
Sbjct: 353 DDFCKDGKVKEAIEVLGLLEKQHTPVDLPRYLRLMKACGEAKALQEAKAVHESLIKSVSP 412
Query: 443 LRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQF 502
L+VSTYN IL+MYS+C SMDDA++VF M ER+LTSWDTMIT FAKN LGE+A+D+
Sbjct: 413 LKVSTYNRILEMYSKCGSMDDAYAVFKKMPERNLTSWDTMITWFAKNDLGEEAIDL---- 468
Query: 503 KQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGY 562
KDYGIVPSMKHY S+VDMLG++GY
Sbjct: 469 ------------------------------------KDYGIVPSMKHYASMVDMLGNSGY 492
Query: 563 LDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLV 622
LDEALEF+EKMP+EP VDVWE LMN+CR+ GN+E+GDRCAE+VE L+PSRL E+SK
Sbjct: 493 LDEALEFVEKMPLEPSVDVWETLMNICRVQGNMEIGDRCAELVEHLEPSRLTEQSK---- 548
Query: 623 PVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGY 682
VRS+VHEYRAGDTSHPE DKIYA +RGL+AQMKEAGY
Sbjct: 549 -----------------------VRSRVHEYRAGDTSHPENDKIYAKLRGLKAQMKEAGY 585
Query: 683 IPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKI 742
+PETRFVLHDIDQEGKEEALLAHSERLAV++GLLSSPAR+PIR++KNLRVCGDCH+ALKI
Sbjct: 586 VPETRFVLHDIDQEGKEEALLAHSERLAVAYGLLSSPARSPIRVIKNLRVCGDCHTALKI 645
Query: 743 ISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
ISK+VGRELIIRDAKRFHHFKDGLCSCRDYW
Sbjct: 646 ISKLVGRELIIRDAKRFHHFKDGLCSCRDYW 676
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449485419|ref|XP_004157162.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g25580-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/788 (48%), Positives = 494/788 (62%), Gaps = 72/788 (9%)
Query: 1 MSRSTASFLTIRSLTALSKVSSSLTSCDSTKTLYLLKNLSTAIERFDFQNPNGYYEDDSF 60
M + A+ L RSL AL SS +S S K L L++NLS A ER + QN NGY+ D+S
Sbjct: 1 MCKKRAAILARRSLIALYTPRSSCSSSVSNKALNLVRNLSIASEREECQNDNGYHADNSL 60
Query: 61 QN-----------DQHPNGFCTEQSSVDFQQKPNEHGLNPNGGFTERRVNDYWDNPLRQN 109
+ +Q P + S Q +P++ L+ G +TE + L +
Sbjct: 61 PSYQTHGGSVSSYNQSPGYYQHHAQSTSSQSRPHQDILD--GFYTENSLQG-----LHRP 113
Query: 110 GNCGFYGQNHGGLKQNRIDNCQKASGGYRESFSSEQQRNIVGENGNFKGHYRQIDGYGKQ 169
YGQ GG N + AS Y + +S
Sbjct: 114 STSSVYGQKPGGSFANTSPMHESASRSYGQHYSG-------------------------- 147
Query: 170 NSNGIYGESSRGFQQNSNEFYQHHAGVNSESHINEFQNNTFQQNGNFNDYGWYNN-GQPH 228
+S GF QN +E Y+ E+ N + NGNF + G+ Q H
Sbjct: 148 -----VPPNSCGFNQNHHEAYR-------ETFQNTHHASPVAPNGNFIENGYKGGVAQDH 195
Query: 229 PNLSGAQPQMSRSGGNANVQNQYGPIHYGPGEVMQNRNGFNSQRFSESLGSFNGNCMQDT 288
+ +G+ P+ N + + G M N + + + N + T
Sbjct: 196 NSYNGSTPR--------NFVDMNNNVVCGVDRSMSQNNQLGHREIFSAYNGYGYN-NEAT 246
Query: 289 GQHQQALSG---HYSGNFGIHQNSPSFYQQDQNGGQYQWDQSRRQYQQNPNEGQYQSYSG 345
Q+ +SG H + G + + P Q +QN Q Q QY Q + QYQ +
Sbjct: 247 QQNNYGVSGQNLHDNPMSGPNNHIPLSRQYEQNSIPLQHPQG--QYHQGSSVEQYQPNTD 304
Query: 346 NIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQC 405
QN M+ +Q+LNN ++ E + Q+ G LE+LD KEGK+KEA+++L +LEKQ
Sbjct: 305 TNQNSMIGTQLLNNVNANEEIGEP-KDCQDGGPLEKLDEFCKEGKLKEAVQILEVLEKQH 363
Query: 406 ISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAF 465
I VDL + LM ACG+A++LEEAK V +V + + ++VSTYN IL+MYS+C SMDDA+
Sbjct: 364 IPVDLSRYLDLMNACGEARSLEEAKVVCNYVIKSQTHVKVSTYNKILEMYSKCGSMDDAY 423
Query: 466 SVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALG 525
++F+ M R++TSWDTMIT AKNGLGEDA+D+F +FK+AGL+PD ++FIGVFSACS LG
Sbjct: 424 TIFNKMPSRNITSWDTMITWLAKNGLGEDAIDLFYEFKKAGLRPDGKMFIGVFSACSVLG 483
Query: 526 DVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKL 585
D EGMLHFESM+K+YGI PSM HYVSIVDMLGS G++DEA+EFIEKMP+EP VD+WE +
Sbjct: 484 DADEGMLHFESMTKNYGITPSMHHYVSIVDMLGSIGFVDEAVEFIEKMPLEPGVDIWETM 543
Query: 586 MNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVPVNASELAKEKENKKLASQNLLE 645
MN+ R HG +ELGDRC E+VE LD SRLNE+SKAGL+PV AS+L K + +KLA++NLLE
Sbjct: 544 MNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLXKREREEKLANRNLLE 603
Query: 646 VRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAH 705
VRS+VHEYRAGDTSHPE D+IY L+RGLR QMKEAGYIPETRFVLHDIDQE K +ALL H
Sbjct: 604 VRSRVHEYRAGDTSHPENDRIYTLLRGLREQMKEAGYIPETRFVLHDIDQEAKNDALLGH 663
Query: 706 SERLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDG 765
SERLAV++GL+SS AR+PIR++KNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDG
Sbjct: 664 SERLAVAYGLISSSARSPIRVIKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDG 723
Query: 766 LCSCRDYW 773
LCSCRDYW
Sbjct: 724 LCSCRDYW 731
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528308|ref|XP_003532746.1| PREDICTED: pentatricopeptide repeat-containing protein At2g25580-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/637 (55%), Positives = 432/637 (67%), Gaps = 35/637 (5%)
Query: 156 FKGHYRQIDGYG-KQNSNGIYGESSRGF-------QQNSNEFYQHHAGVNSES------- 200
F G Y+ D G +QN G Y ES +Q + Q +AG NS
Sbjct: 44 FSGGYQNDDSSGYQQNRVGFYLESQNKADSYELLNKQRPDYVSQANAGQNSYGAGQIADG 103
Query: 201 -HIN---EFQNNTFQQNGNFNDYGWYNNGQPHPNLSGAQPQMSRSGGNANVQNQYGPIHY 256
HIN NN NG+ N Y + + + SG +AN +
Sbjct: 104 GHINVTRNVHNNLVGHNGSVNGYFGQGDMKMQQKVGAGVDNAWGSGMHANPFVEKHDWTQ 163
Query: 257 GPGEVMQNRNGFNSQRFSESLGSFNGNCMQDTGQHQQALSGHYSGNFGIHQNSPSFYQQD 316
PG+ MQ+ N ++S ES G+ G+ Q+ QQ + HY G+ + P + Q
Sbjct: 164 EPGQGMQSPNAYSSPGPLESQGNLRGDLNQNIDHFQQPQNVHYKGSHEMRPQYPGYGQS- 222
Query: 317 QNGGQYQWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNN 376
QQ+ +GQY Q ++ S + +N + + A+AS S
Sbjct: 223 ---------------QQSLKDGQYLPNLNTAQRSVVGSHLSSNANPDGESAKASNDSPYR 267
Query: 377 GTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHV 436
GTLE+LD EG VKEA+EVL LLEK I VDLP + QLM CG+ K+LEEAK VH H
Sbjct: 268 GTLEELDNFCIEGNVKEAVEVLELLEKLDIPVDLPRYLQLMHQCGENKSLEEAKNVHRHA 327
Query: 437 ERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAV 496
+ LSPL+VSTYN IL+MY EC S+DDA ++F+NM ER+LT+WDTMIT AKNG ED++
Sbjct: 328 LQHLSPLQVSTYNRILEMYLECGSVDDALNIFNNMPERNLTTWDTMITQLAKNGFAEDSI 387
Query: 497 DIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDM 556
D+F+QFK GLKPD Q+FIGV AC LGD+ EGM HFESM+KDYGIVPSM H+VS+VDM
Sbjct: 388 DLFTQFKNLGLKPDGQMFIGVLFACGMLGDIDEGMQHFESMNKDYGIVPSMTHFVSVVDM 447
Query: 557 LGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEK 616
+GS G+LDEA EFIEKMPM+P D+WE LMNLCR+HGN LGD CAE+VEQLD S LNE+
Sbjct: 448 IGSIGHLDEAFEFIEKMPMKPSADIWETLMNLCRVHGNTGLGDCCAELVEQLDSSCLNEQ 507
Query: 617 SKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQ 676
SKAGLVPV AS+L KEKE + L ++NLLEVRS+V EYRAGDT HPE+DKIYAL+RGL++Q
Sbjct: 508 SKAGLVPVKASDLTKEKEKRTLTNKNLLEVRSRVREYRAGDTFHPESDKIYALLRGLKSQ 567
Query: 677 MKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDC 736
MKEAGY+PET+FVLHDIDQEGKEEALLAHSERLA+++GLL+SPARAP+R++KNLRVCGDC
Sbjct: 568 MKEAGYVPETKFVLHDIDQEGKEEALLAHSERLAIAYGLLNSPARAPMRVIKNLRVCGDC 627
Query: 737 HSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
H+ALKIISK+VGRELIIRDAKRFHHF DGLCSCRDYW
Sbjct: 628 HTALKIISKLVGRELIIRDAKRFHHFNDGLCSCRDYW 664
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449711|ref|XP_004142608.1| PREDICTED: pentatricopeptide repeat-containing protein At2g25580-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/777 (49%), Positives = 485/777 (62%), Gaps = 110/777 (14%)
Query: 1 MSRSTASFLTIRSLTALSKVSSSLTSCDSTKTLYLLKNLSTAIERFDFQNPNGYYEDDSF 60
M + A+ L RSL AL SS +S S K L L++NLS A ER + QN
Sbjct: 1 MCKKRAAILARRSLIALYTPRSSCSSSVSNKALNLVRNLSIASEREECQND--------- 51
Query: 61 QNDQHPNGFCTEQSSVDFQQKPNEHGLNPNGGFTERRVNDYWDNPLRQNGNCGFYGQNHG 120
NG+ + S +Q +GG V+ Y +P G+Y Q+H
Sbjct: 52 ------NGYHADNSLPSYQT---------HGG----SVSSYNQSP-------GYY-QHHA 84
Query: 121 GLKQNRIDNCQKASGGYRESFSSEQQRNIVGENGNFKGHYRQIDGYGKQNS-NGIYGESS 179
+S SS+ + H +DG+ +NS G++ S+
Sbjct: 85 ------------------QSTSSQS-----------RPHQDILDGFYTENSLQGLHRPST 115
Query: 180 RGFQQNSNEFYQHHAGVNSESHINEFQNNTFQQNGNFNDYGWYNNGQPHPNLSGAQPQMS 239
S+ + Q G F N + YG + +G P PN G + S
Sbjct: 116 ------SSVYGQKPGG--------SFANTSPMHESASRSYGQHYSGVP-PNSCGCGSKRS 160
Query: 240 RSGGNANVQNQYGPIHYGPGEVMQNRNGFNSQRFSESLGSFNGNCMQDTGQHQQALSG-- 297
S N G E+ NG+ G + T Q+ +SG
Sbjct: 161 MSQNN----------QLGHREIFSAYNGY-------------GYNNEATQQNNYGVSGQN 197
Query: 298 -HYSGNFGIHQNSPSFYQQDQNGGQYQWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQV 356
H + G + + P Q +QN Q Q QY Q + QYQ + QN M+ +Q+
Sbjct: 198 LHDNPMSGPNNHIPLSRQYEQNSIPLQHPQG--QYHQGSSVEQYQPNTDTNQNSMIGTQL 255
Query: 357 LNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQL 416
LNN ++ E + Q+ G LE+LD KEGK+KEA+++L +LEKQ I VDL + L
Sbjct: 256 LNNVNANEEIGEP-KDCQDGGPLEKLDEFCKEGKLKEAVQILEVLEKQHIPVDLSRYLDL 314
Query: 417 MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDL 476
M ACG+A++LEEAK V +V + + ++VSTYN IL+MYS+C SMDDA+++F+ M R++
Sbjct: 315 MNACGEARSLEEAKVVCNYVIKSQTHVKVSTYNKILEMYSKCGSMDDAYTIFNKMPSRNI 374
Query: 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFES 536
TSWDTMIT AKNGLGEDA+D+F +FK+AGL+PD ++FIGVFSACS LGD EGMLHFES
Sbjct: 375 TSWDTMITWLAKNGLGEDAIDLFYEFKKAGLRPDGKMFIGVFSACSVLGDADEGMLHFES 434
Query: 537 MSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLE 596
M+K+YGI PSM HYVSIVDMLGS G++DEA+EFIEKMP+EP VD+WE +MN+ R HG +E
Sbjct: 435 MTKNYGITPSMHHYVSIVDMLGSIGFVDEAVEFIEKMPLEPGVDIWETMMNISRAHGLME 494
Query: 597 LGDRCAEIVEQLDPSRLNEKSKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAG 656
LGDRC E+VE LD SRLNE+SKAGL+PV AS+L KE+E KKLA++NLLEVRS+VHEYRAG
Sbjct: 495 LGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREKKKLANRNLLEVRSRVHEYRAG 554
Query: 657 DTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLL 716
DTSHPE D+IY L+RGLR QMKEAGYIPETRFVLHDIDQE K +ALL HSERLAV++GL+
Sbjct: 555 DTSHPENDRIYTLLRGLREQMKEAGYIPETRFVLHDIDQEAKNDALLGHSERLAVAYGLI 614
Query: 717 SSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
SS AR+PIR++KNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW
Sbjct: 615 SSSARSPIRVIKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 671
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|49533766|gb|AAT66765.1| Putative selenium-binding protein, related [Solanum demissum] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 375/806 (46%), Positives = 493/806 (61%), Gaps = 98/806 (12%)
Query: 1 MSRSTASFLTIRSLTALSKVSSSLTSCDSTKTLYLLKNLSTAIERFDFQNPNGYYEDDSF 60
M RS A+ LT +SL LSKVS +S K + ++++STA + + N
Sbjct: 1 MYRSRATILTSKSLRTLSKVSRQSLHLESLKFVTFVRSISTATQISEIDN---------- 50
Query: 61 QNDQHPNGFCTEQSSVDFQQKPNEHGLNPNGGFTERRVNDYWDNPLRQNGNCGFYGQNHG 120
+ +++ DFQQ NP+G F N N L
Sbjct: 51 ------HSELKGENNSDFQQ-------NPDGDFNYNSNNTVSLNKL-------------- 83
Query: 121 GLKQNRIDNCQKASGGYRESFSSEQQRNIVGENGNFKGHYRQIDGYGKQNSNGIYGESSR 180
N Q Y + S R+ G G++ G+ R+I+ QN +G+ + R
Sbjct: 84 --------NWQDQEWAYNQQLS----RSTEG-GGSYSGNSRRIE----QNPSGVNPQKPR 126
Query: 181 ----------GFQQN---SNEFYQHHAGVNSESHINEFQ-----NNTFQQNGNFNDYGWY 222
GFQQN NE + +G S NEFQ NN F+ ++ +
Sbjct: 127 TEFHEQKDTKGFQQNLYARNENFS--SGYVDVSSRNEFQQTVGRNNDFRSRKDYQSNLVH 184
Query: 223 NNGQPHPNLSGAQPQMSRSGGNANVQNQYGPIHYGPGEVMQNRNGFNSQRFSESLGSFNG 282
N S + SR G Q ++ G QN NG NS+ S +F+G
Sbjct: 185 NRNDSGGENSSNLLRSSRFEGGLEAQPSQNGVY---GHYQQNLNGGNSE---TSRQNFSG 238
Query: 283 NCMQDTGQHQQALSGHYSGNFGIHQNSPSFYQQDQNGGQYQWDQ-------SRRQ---YQ 332
N + G QQ LS + GN Q+ S + QN Y ++ SR YQ
Sbjct: 239 NYTSNGGVPQQNLSNYDPGNVRNVQSENS-EKYPQNASGYNMERHTNSSGYSREMMGLYQ 297
Query: 333 QN-----PNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVK 387
QN P+ +Q+ S QNG++ Q + + + ++ SS G++++LD L K
Sbjct: 298 QNLSGFNPSSAGHQA-SYQYQNGIVGHQEMRSSTPVEQSIDSDDSSSKKGSVDELDDLCK 356
Query: 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVST 447
EGKVKEA+EVL LL++Q ++VDL + LM C + K+LE+AK++HEH+ R L +
Sbjct: 357 EGKVKEAVEVLQLLDQQHVTVDLSRYIMLMDVCSEDKSLEDAKSIHEHLVRSHPHLDIKM 416
Query: 448 YNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL 507
YN IL+MY +C SM DAF VF M +R+LTSWDTMIT KNGLGEDA+++F +FK+ G+
Sbjct: 417 YNKILEMYGKCGSMKDAFLVFRKMPQRNLTSWDTMITWLGKNGLGEDAIELFGEFKETGM 476
Query: 508 KPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEAL 567
KPD Q+F+GVF ACS +GD+VEGMLHFESMSKDY I SM+ YV +VDMLGSTGYLDEA+
Sbjct: 477 KPDGQMFLGVFHACSVVGDIVEGMLHFESMSKDYDIDLSMEQYVGVVDMLGSTGYLDEAM 536
Query: 568 EFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVPVNAS 627
EFIE+MP+EP ++VWE +MNLCR+HGNLELGDRCAEIVE LDPSRL+E+SKAG + V AS
Sbjct: 537 EFIERMPIEPSIEVWETMMNLCRIHGNLELGDRCAEIVELLDPSRLDEQSKAGFLAVKAS 596
Query: 628 ELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETR 687
++AKEKE KK ++Q+LLE RSKVHEYRAGD SHP+ +KIYAL+RGL+ MKE GYIPET+
Sbjct: 597 DIAKEKE-KKRSAQSLLEARSKVHEYRAGDRSHPDHEKIYALLRGLKQLMKEDGYIPETK 655
Query: 688 FVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIV 747
FVLHD+DQE KE+AL+AHSERLA + GL++S AR+PIRI+KNLRVCGDCH+ALKI SK+V
Sbjct: 656 FVLHDVDQETKEDALMAHSERLAFAQGLMNSSARSPIRIIKNLRVCGDCHNALKIASKLV 715
Query: 748 GRELIIRDAKRFHHFKDGLCSCRDYW 773
GRE+I+RDAKRFHH KDGLCSCRDYW
Sbjct: 716 GREIIMRDAKRFHHLKDGLCSCRDYW 741
|
Source: Solanum demissum Species: Solanum demissum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255578133|ref|XP_002529936.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223530566|gb|EEF32444.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 299/461 (64%), Positives = 354/461 (76%), Gaps = 28/461 (6%)
Query: 263 QNRNGFNSQRFSESLGSFNGNCMQDTGQHQQALSG-HYSGNFGIHQNSPSFYQQDQNGGQ 321
QN G+ Q FS GS+ + + QH L +Y+GN G++ PS+
Sbjct: 105 QNSGGY--QNFS---GSYRESWNNNYTQHVNQLPPPYYAGNVGMY--PPSY--------- 148
Query: 322 YQWDQSRRQYQQN---PNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGT 378
+ QYQQN N GQY S S ++QN M+AS V NN K EDD AE SS GT
Sbjct: 149 ----GAAAQYQQNLSVVNAGQYMSNSNDVQNVMVASGVSNNPKVEDDLAE---SSSYRGT 201
Query: 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVER 438
LE+LD L KE KVKEA+EVL LLE++ + VDLP F QLM+ CG+AKA EEAK VH+H+ R
Sbjct: 202 LEELDELCKEKKVKEAVEVLNLLEERRVLVDLPRFLQLMRICGEAKASEEAKVVHDHLVR 261
Query: 439 LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDI 498
L SPL VST+N IL+MY +C MD AF+VF+ M +R+LT+WDTMI AKNGLGEDA+D+
Sbjct: 262 LQSPLAVSTFNKILEMYGKCGDMDSAFAVFNKMPKRNLTTWDTMIAWLAKNGLGEDAIDL 321
Query: 499 FSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG 558
FSQFKQAGL PD Q+FIGVFSAC +GDV+EGMLHFESM KDYGIVPSM+H+VSIVDMLG
Sbjct: 322 FSQFKQAGLVPDAQLFIGVFSACGVVGDVIEGMLHFESMKKDYGIVPSMEHFVSIVDMLG 381
Query: 559 STGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSK 618
+ G+LDEALEFIEKMPMEP +DVWE LMNL R+HGNLELGDRCA++VE LD S LNE+SK
Sbjct: 382 TIGHLDEALEFIEKMPMEPSIDVWESLMNLSRIHGNLELGDRCAKLVELLDASHLNEQSK 441
Query: 619 AGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMK 678
AGLVP S L KEK+ KK ASQNLLEVRS+VHEYRAGDTSHPETD+IYA++RGLRAQMK
Sbjct: 442 AGLVPAKVSNLTKEKD-KKPASQNLLEVRSRVHEYRAGDTSHPETDRIYAMLRGLRAQMK 500
Query: 679 EAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSP 719
E GYIPETRFVLHD+DQE KE+ALL+HSERLA ++GLL+SP
Sbjct: 501 EHGYIPETRFVLHDVDQECKEDALLSHSERLAAAYGLLTSP 541
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487235|ref|XP_003613905.1| Pentatricopeptide repeat protein [Medicago truncatula] gi|355515240|gb|AES96863.1| Pentatricopeptide repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 265/391 (67%), Positives = 320/391 (81%)
Query: 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVER 438
+E+LD EG+VKEAI+VL +LEK I VDL +LMQ CG K+LEEAK VH +V +
Sbjct: 307 IEELDSSCMEGEVKEAIDVLQVLEKFHILVDLDRCLRLMQQCGKTKSLEEAKVVHRYVLQ 366
Query: 439 LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDI 498
LSPL+VST NGIL+MY +C S+DDA +VF NMTERDLT+ MI AKNG ED++D+
Sbjct: 367 HLSPLKVSTCNGILEMYFQCGSVDDAVNVFKNMTERDLTTICIMIKQLAKNGFAEDSIDL 426
Query: 499 FSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG 558
F+QFK++GLKPD Q+FIGVF ACS LGD+VEGMLHFESMS+DY IVP+M+HYVS+VDM+G
Sbjct: 427 FTQFKRSGLKPDGQMFIGVFGACSMLGDIVEGMLHFESMSRDYDIVPTMEHYVSLVDMIG 486
Query: 559 STGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSK 618
S G+LDEALEFIEKMPMEP V+VWE LMN CR+HGN ELGDRCAE+VE+LDPSRLNEKSK
Sbjct: 487 SIGHLDEALEFIEKMPMEPSVEVWETLMNSCRVHGNTELGDRCAELVEKLDPSRLNEKSK 546
Query: 619 AGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMK 678
GL+ + S++ K K+ K N + +++HEYRAGDTS PE + IY L+R LR QMK
Sbjct: 547 VGLLLIETSDITKNKKQNKPPDNNPVGNMNRIHEYRAGDTSLPENNMIYVLLRRLRVQMK 606
Query: 679 EAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHS 738
EAGYI ETRF LHD+DQE KE+ALL HSERLA++ GLL+SPAR+ IR++KNLRVCGDCH+
Sbjct: 607 EAGYIAETRFCLHDVDQEDKEDALLGHSERLAIAKGLLNSPARSTIRVIKNLRVCGDCHT 666
Query: 739 ALKIISKIVGRELIIRDAKRFHHFKDGLCSC 769
ALKIIS +VGRE IIRDAKRFHHFK+GLCSC
Sbjct: 667 ALKIISDLVGREFIIRDAKRFHHFKNGLCSC 697
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 773 | ||||||
| TAIR|locus:2040135 | 615 | MEF8 "AT2G25580" [Arabidopsis | 0.508 | 0.639 | 0.526 | 4.5e-121 | |
| TAIR|locus:2127826 | 537 | MEF8S "MEF8 similar" [Arabidop | 0.635 | 0.914 | 0.474 | 2.4e-115 | |
| TAIR|locus:2040859 | 469 | AT2G34370 [Arabidopsis thalian | 0.525 | 0.865 | 0.438 | 2.9e-96 | |
| TAIR|locus:2013738 | 475 | AT1G29710 "AT1G29710" [Arabido | 0.509 | 0.829 | 0.447 | 1.1e-89 | |
| TAIR|locus:2053659 | 579 | AT2G15690 "AT2G15690" [Arabido | 0.468 | 0.625 | 0.318 | 6.9e-83 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.554 | 0.504 | 0.359 | 1.3e-77 | |
| TAIR|locus:2027554 | 704 | AT1G56690 [Arabidopsis thalian | 0.499 | 0.548 | 0.376 | 1.8e-76 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.503 | 0.498 | 0.38 | 1.9e-76 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.507 | 0.476 | 0.380 | 2.1e-75 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.522 | 0.510 | 0.377 | 5.2e-75 |
| TAIR|locus:2040135 MEF8 "AT2G25580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1102 (393.0 bits), Expect = 4.5e-121, Sum P(3) = 4.5e-121
Identities = 208/395 (52%), Positives = 278/395 (70%)
Query: 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVER 438
+E+ D K GKVK+A+ + +L VDL +L + CG+A+ L+EAK VH +
Sbjct: 223 IEEYDAFCKHGKVKKALYTIDILASMNYVVDLSRLLRLAKICGEAEGLQEAKTVHGKISA 282
Query: 439 LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDI 498
+S L +S+ + +L+MYS C ++A SVF M+E++L +W +I FAKNG GEDA+D+
Sbjct: 283 SVSHLDLSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDM 342
Query: 499 FSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG 558
FS+FK+ G PD Q+F G+F AC LGDV EG+LHFESMS+DYGI PS++ YVS+V+M
Sbjct: 343 FSRFKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSRDYGIAPSIEDYVSLVEMYA 402
Query: 559 STGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSK 618
G+LDEALEF+E+MPMEP+VDVWE LMNL R+HGNLELGD CAE+VE LDP+RLN++S+
Sbjct: 403 LPGFLDEALEFVERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFLDPTRLNKQSR 462
Query: 619 AGLVPVXXXXXXXXXXXXXXXXQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMK 678
G +PV L V+S + E+RAGDT+ PE D+++ L+R L+ M
Sbjct: 463 EGFIPVKASDVEKESLKKRSGI--LHGVKSSMQEFRAGDTNLPENDELFQLLRNLKMHMV 520
Query: 679 EAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHS 738
E GY+ ETR LHDIDQE KE LL HSER+A + +L+S R P ++KNLRVC DCH+
Sbjct: 521 EVGYVAETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHN 580
Query: 739 ALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
ALKI+S IVGRE+I RD KRFH K+G C+C+DYW
Sbjct: 581 ALKIMSDIVGREVITRDIKRFHQMKNGACTCKDYW 615
|
|
| TAIR|locus:2127826 MEF8S "MEF8 similar" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
Identities = 240/506 (47%), Positives = 315/506 (62%)
Query: 269 NSQRFSESLGSFNGNCMQDTGQHQQALSGHYSGNFGIHQNSPS-FYQQDQNGGQYQWDQS 327
NS + FNG Q G QQ S S N QN + FYQ N Q + S
Sbjct: 46 NSSHHIGYVNGFNGG-EQSLGGFQQN-SYEQSLNPVSGQNPTNRFYQNGYNRNQSYGEHS 103
Query: 328 RRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVK 387
Q+N N +QS G G + V + + S ++ L++LD + +
Sbjct: 104 EIINQRNQN---WQSSDGCSSYGTTGNGVPQENNTGGNHFQQDHSGHSS--LDELDSICR 158
Query: 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVST 447
EGKVK+A+E++ + VDLP + Q CGDA+AL+EAK VHE + + +S
Sbjct: 159 EGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQLCGDAQALQEAKVVHEFITSSVGISDISA 218
Query: 448 YNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL 507
YN I++MYS C S++DA +VF++M ER+L +W +I FAKNG GEDA+D FS+FKQ G
Sbjct: 219 YNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCFAKNGQGEDAIDTFSRFKQEGN 278
Query: 508 KPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEAL 567
KPD ++F +F AC LGD+ EG+LHFESM K+YGI+P M+HYVS+V ML GYLDEAL
Sbjct: 279 KPDGEMFKEIFFACGVLGDMNEGLLHFESMYKEYGIIPCMEHYVSLVKMLAEPGYLDEAL 338
Query: 568 EFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVPVXXX 627
F+E M EP+VD+WE LMNL R+HG+L LGDRC ++VEQLD SRLN++SKAGLVPV
Sbjct: 339 RFVESM--EPNVDLWETLMNLSRVHGDLILGDRCQDMVEQLDASRLNKESKAGLVPVKSS 396
Query: 628 XXXXXXXXXXXXXQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETR 687
N + AGD S PE ++Y ++ L+ M E GY+P ++
Sbjct: 397 DLVKEKLQRMAKGPNY-----GIRYMAAGDISRPENRELYMALKSLKEHMIEIGYVPLSK 451
Query: 688 FVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIV 747
LHD+DQE K+E L H+ER A L +PAR+ IR+MKNLRVC DCH+ALK++SKIV
Sbjct: 452 LALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKLMSKIV 511
Query: 748 GRELIIRDAKRFHHFKDGLCSCRDYW 773
GRELI RDAKRFHH KDG+CSCR+YW
Sbjct: 512 GRELISRDAKRFHHMKDGVCSCREYW 537
|
|
| TAIR|locus:2040859 AT2G34370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
Identities = 182/415 (43%), Positives = 278/415 (66%)
Query: 360 CKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQA 419
C+ +A+ + Q+ T+E D L K+ K++EA+EV+ +LE + VD P L +
Sbjct: 63 CRRVSSYAQMVNNHQSV-TIETFDALCKQVKIREALEVIDILEDKGYIVDFPRLLGLAKL 121
Query: 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSW 479
CG+ +ALEEA+ VH+ ++PL +Y+ +++MYS C S DDA +VF+ M +R+ +W
Sbjct: 122 CGEVEALEEARVVHD----CITPLDARSYHTVIEMYSGCRSTDDALNVFNEMPKRNSETW 177
Query: 480 DTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK 539
TMI AKNG GE A+D+F++F + G KPD +IF VF AC ++GD+ EG+LHFESM +
Sbjct: 178 GTMIRCLAKNGEGERAIDMFTRFIEEGNKPDKEIFKAVFFACVSIGDINEGLLHFESMYR 237
Query: 540 DYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGD 599
DYG+V SM+ YV++++ML + G+LDEAL+F+E+M +EP V++WE LMNLC + G LELGD
Sbjct: 238 DYGMVLSMEDYVNVIEMLAACGHLDEALDFVERMTVEPSVEMWETLMNLCWVQGYLELGD 297
Query: 600 RCAEIVEQLDPSRLNEKSKAGLVPVXXXXXXXXXXXXXXXXQNLLE-VRSKVHEYRAGDT 658
R AE++++LD SR++++S AGLV Q + + + ++HE+RAGDT
Sbjct: 298 RFAELIKKLDASRMSKESNAGLVAAKASDSAMEKLKELRYCQMIRDDPKKRMHEFRAGDT 357
Query: 659 SHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSS 718
SH T + R L+ QM + G++P TR +++E KEE LL S +LA +H +++S
Sbjct: 358 SHLGTVSAF---RSLKVQMLDIGFVPATRVCFVTVEEEEKEEQLLFRSNKLAFAHAIINS 414
Query: 719 PARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
AR P+ +++N+R C D H+ K+IS I GR LI RD K++H +K+G+CSC+DYW
Sbjct: 415 EARRPLTVLQNMRTCIDGHNTFKMISLITGRALIQRDKKKYHFYKNGVCSCKDYW 469
|
|
| TAIR|locus:2013738 AT1G29710 "AT1G29710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 182/407 (44%), Positives = 258/407 (63%)
Query: 370 SRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEA 429
S S N T+E D L +G +EA+EVL LE + ++DL L + CG +ALE A
Sbjct: 79 SPSVAQNVTIETFDSLCIQGNWREAVEVLDYLENKGYAMDLIRLLGLAKLCGKPEALEAA 138
Query: 430 KAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKN 489
+ VHE + L+SP V N I++MYS C S+DDA VF M E + + M+ F N
Sbjct: 139 RVVHECIIALVSPCDVGARNAIIEMYSGCCSVDDALKVFEEMPEWNSGTLCVMMRCFVNN 198
Query: 490 GLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKH 549
G GE+A+D+F++FK+ G KP+ +IF VFS C+ GDV EG L F++M ++YGIVPSM+H
Sbjct: 199 GYGEEAIDLFTRFKEEGNKPNGEIFNQVFSTCTLTGDVKEGSLQFQAMYREYGIVPSMEH 258
Query: 550 YVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609
Y S+ ML ++G+LDEAL F+E+MPMEP VDVWE LMNL R+HG++ELGDRCAE+VE+LD
Sbjct: 259 YHSVTKMLATSGHLDEALNFVERMPMEPSVDVWETLMNLSRVHGDVELGDRCAELVEKLD 318
Query: 610 PSRLNEKSKAGLVPVXXXXXXXXXXXXXXXXQNLLEVRSKVHEY---RAGDTSHPETDKI 666
+RL++ S AGLV + RS+ + Y R D+SHP+ + I
Sbjct: 319 ATRLDKVSSAGLV----------ATKASDFVKKEPSTRSEPYFYSTFRPVDSSHPQMNII 368
Query: 667 YALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRI 726
Y + LR+Q+KE GY+P+TR+ I +E + + E +AV LL S R+ I +
Sbjct: 369 YETLMSLRSQLKEMGYVPDTRYYRSLIMAMENKEQIFGYREEIAVVESLLKSKPRSAITL 428
Query: 727 MKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
+ N+R+ GDCH +K++S I GR++I RDAK +H FK+G+C C + W
Sbjct: 429 LTNIRIVGDCHDMMKLMSVITGRDMIKRDAKIYHLFKNGVCRCNNLW 475
|
|
| TAIR|locus:2053659 AT2G15690 "AT2G15690" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 480 (174.0 bits), Expect = 6.9e-83, Sum P(2) = 6.9e-83
Identities = 125/393 (31%), Positives = 199/393 (50%)
Query: 237 QMSRSGGNANVQNQYGPIHYGPGEVMQNRNGFNSQRFSESLGSFN----GNCMQDTGQHQ 292
Q +SG + Q Y P + QN+ N QR +S ++ G Q GQ+
Sbjct: 60 QNPQSGSPSQHQRPYPPQSFDS----QNQTNTN-QRVPQSPNQWSTQHGGQIPQYGGQNP 114
Query: 293 QALSGHYSGNFGIHQNSPSFYQQDQNGGQY-QWDQSRRQYQ-QNPNEG-QYQSYSG-NIQ 348
Q G +G QN Q Q GG Q R QY Q P G +Y N+Q
Sbjct: 115 Q--HGGQRPPYG-GQNPQQGGQMSQYGGHNPQHGGHRPQYGGQRPQYGGPGNNYQNQNVQ 171
Query: 349 NGMMASQVLNNCKHEDDFAEASRSSQNN-------GTLEQLDGLVKEGKVKEAIEVLGLL 401
+ + + +S S N ++E++ L + K+AIE LL
Sbjct: 172 QSNQSQYYTPQQQQQPQPPRSSNQSPNQMNEVAPPPSVEEVMRLCQRRLYKDAIE---LL 228
Query: 402 EKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR--VSTYNGILKMYSECD 459
+K + D F L ++C + K+LE +K VH+H L S R N ++ M+ EC
Sbjct: 229 DKGAMP-DRECFVLLFESCANLKSLEHSKKVHDHF--LQSKFRGDPKLNNMVISMFGECS 285
Query: 460 SMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFS 519
S+ DA VF +M ++D+ SW M+ ++ NG+G+DA+ +F + + GLKP+++ F+ VF
Sbjct: 286 SITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFL 345
Query: 520 ACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDV 579
AC+ +G + E LHF+SM ++GI P +HY+ ++ +LG G+L EA ++I +P EP
Sbjct: 346 ACATVGGIEEAFLHFDSMKNEHGISPKTEHYLGVLGVLGKCGHLVEAEQYIRDLPFEPTA 405
Query: 580 DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612
D WE + N R+HG+++L D E++ +DPS+
Sbjct: 406 DFWEAMRNYARLHGDIDLEDYMEELMVDVDPSK 438
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 161/448 (35%), Positives = 249/448 (55%)
Query: 345 GNIQNGMMASQVLNNCKHEDDFAEASRS----SQNNGTLEQ--LDGLVKEGKVKEAIEVL 398
G N +A+ V++ D +A R+ S+ N LDG + ++A ++L
Sbjct: 403 GLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLL 462
Query: 399 GLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC 458
+ ++ + V TF+ L+ + ++ + + +H V +L N ++ MYS+C
Sbjct: 463 SEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKC 522
Query: 459 DSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVF 518
S+D A VF+ M R++ SW +MITGFAK+G ++ F+Q + G+KP++ ++ +
Sbjct: 523 GSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAIL 582
Query: 519 SACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPD 578
SACS +G V EG HF SM +D+ I P M+HY +VD+L G L +A EFI MP + D
Sbjct: 583 SACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQAD 642
Query: 579 VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSK-AGLVPVXXXXXXXXXXXXX 637
V VW + CR+H N ELG A + +LDP+ + + +
Sbjct: 643 VLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRK 702
Query: 638 XXXQNL--------LEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFV 689
+NL +EV K+H++ GDT+HP +IY + L ++K GY+P+T V
Sbjct: 703 MKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLV 762
Query: 690 LHDIDQEG----KEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKIISK 745
LH +++E KE L HSE++AV+ GL+S+ P+R+ KNLRVCGDCH+A+K IS
Sbjct: 763 LHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYIST 822
Query: 746 IVGRELIIRDAKRFHHFKDGLCSCRDYW 773
+ GRE+++RD RFHHFKDG CSC DYW
Sbjct: 823 VSGREIVLRDLNRFHHFKDGKCSCNDYW 850
|
|
| TAIR|locus:2027554 AT1G56690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 746 (267.7 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
Identities = 150/398 (37%), Positives = 231/398 (58%)
Query: 387 KEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVS 446
++G EA+++ ++KQ + P+ ++ C +L+ + VH H+ R V
Sbjct: 308 RKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVY 367
Query: 447 TYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG 506
+ ++ MY +C + A VF + +D+ W+++I+G+A +GLGE+A+ IF + +G
Sbjct: 368 VASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSG 427
Query: 507 LKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEA 566
P+ I + +ACS G + EG+ FESM + + P+++HY VDMLG G +D+A
Sbjct: 428 TMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKA 487
Query: 567 LEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDP---------SRLN-EK 616
+E IE M ++PD VW L+ C+ H L+L + A+ + + +P S +N +
Sbjct: 488 MELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASR 547
Query: 617 SKAGLVPVXXXXXXXXXXXXXXXXQNLLEVRSKVHEY-RAGDTSHPETDKIYALIRGLRA 675
SK G V V + +EV KVH + R G +HPE I ++
Sbjct: 548 SKWGDVAVVRKNMRTNNVSKFPGC-SWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDG 606
Query: 676 QMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGD 735
++EAGY P+ VLHD+D+E K ++L HSERLAV++GLL P PIR+MKNLRVCGD
Sbjct: 607 LLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGD 666
Query: 736 CHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
CH+A+K+ISK+ RE+I+RDA RFHHF +G CSCRDYW
Sbjct: 667 CHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 152/400 (38%), Positives = 236/400 (59%)
Query: 384 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPL 443
G + G EA+ + +E++ ++ +FS + C D ALE K +H + +
Sbjct: 383 GYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET 442
Query: 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFK 503
N +L MY +C S+++A +F M +D+ SW+TMI G++++G GE A+ F K
Sbjct: 443 GCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMK 502
Query: 504 QAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYL 563
+ GLKPDD + V SACS G V +G +F +M++DYG++P+ +HY +VD+LG G L
Sbjct: 503 REGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLL 562
Query: 564 DEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDP---------SRLN 614
++A ++ MP EPD +W L+ R+HGN EL + A+ + ++P S L
Sbjct: 563 EDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLY 622
Query: 615 EKS-KAGLVPVXXXXXXXXXXXXXXXXQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGL 673
S + G V + +E+++K H + GD HPE D+I+A + L
Sbjct: 623 ASSGRWGDVG-KLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEEL 681
Query: 674 RAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVC 733
+MK+AGY+ +T VLHD+++E KE + HSERLAV++G++ + PIR++KNLRVC
Sbjct: 682 DLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVC 741
Query: 734 GDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
DCH+A+K +++I GR +I+RD RFHHFKDG CSC DYW
Sbjct: 742 EDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 153/402 (38%), Positives = 235/402 (58%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQC-ISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL 440
+ G + G EAIE+ ++E++ I+ + T+ ++ AC A AL + +H + +
Sbjct: 422 ISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNG 481
Query: 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500
L V + MY +C ++DA S+F + + W+T+I +G GE AV +F
Sbjct: 482 LYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFK 541
Query: 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560
+ G+KPD F+ + SACS G V EG FE M DYGI PS+KHY +VDM G
Sbjct: 542 EMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRA 601
Query: 561 GYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL------- 613
G L+ AL+FI+ M ++PD +W L++ CR+HGN++LG +E + +++P +
Sbjct: 602 GQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLS 661
Query: 614 NEKSKAGLVPVXXXXXXXXXXXXXXXXQ--NLLEVRSKVHEYRAGDTSHPETDKIYALIR 671
N + AG + +EV +KV + G+ +HP +++Y +
Sbjct: 662 NMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELT 721
Query: 672 GLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLR 731
L+A++K GY+P+ RFVL D++ + KE L++HSERLA++ L+++PA+ IRI KNLR
Sbjct: 722 ALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLR 781
Query: 732 VCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
VCGDCHS K ISKI RE+I+RD+ RFHHFK+G+CSC DYW
Sbjct: 782 VCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 734 (263.4 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
Identities = 159/421 (37%), Positives = 235/421 (55%)
Query: 364 DDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDA 423
D+ E S S N + G + G ++AI + ++K S + T + ++ AC
Sbjct: 378 DESPEKSLPSWN----AMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQL 433
Query: 424 KALEEAKAVHEHVER--LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDT 481
AL K VH+ V S + VST ++ MY++C S+ +A +F MT+++ +W+T
Sbjct: 434 GALSLGKWVHDLVRSTDFESSIYVST--ALIGMYAKCGSIAEARRLFDLMTKKNEVTWNT 491
Query: 482 MITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDY 541
MI+G+ +G G++A++IF + +G+ P F+ V ACS G V EG F SM Y
Sbjct: 492 MISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRY 551
Query: 542 GIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRC 601
G PS+KHY +VD+LG G+L AL+FIE M +EP VWE L+ CR+H + L
Sbjct: 552 GFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTV 611
Query: 602 AEIVEQLDPSRL-------NEKSKAGLVPVXXXXXXXXXXXXXXXXQN--LLEVRSKVHE 652
+E + +LDP + N S P L+E+ H
Sbjct: 612 SEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHV 671
Query: 653 YRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVS 712
+ +GD SHP+ +IY + L +M+EAGY PET LHD+++E +E + HSERLA++
Sbjct: 672 FTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIA 731
Query: 713 HGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDY 772
GL+++ IRI+KNLRVC DCH+ K+ISKI R +++RDA RFHHFKDG+CSC DY
Sbjct: 732 FGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDY 791
Query: 773 W 773
W
Sbjct: 792 W 792
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 773 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-90 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-87 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-25 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 1e-22 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-20 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 299 bits (766), Expect = 1e-90
Identities = 135/406 (33%), Positives = 221/406 (54%), Gaps = 19/406 (4%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
L G G +EA+ + + +S+D TFS +++ LE AK H + R
Sbjct: 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
PL + ++ +YS+ M+DA +VF M ++L SW+ +I G+ +G G AV++F +
Sbjct: 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416
Query: 502 FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG 561
G+ P+ F+ V SAC G +G F+SMS+++ I P HY ++++LG G
Sbjct: 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476
Query: 562 YLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN------- 614
LDEA I + P +P V++W L+ CR+H NLELG AE + + P +LN
Sbjct: 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLN 536
Query: 615 -------EKSKAGLVPVNASELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIY 667
+ A +V E K K + +EV+ + H + +GD HP++ +IY
Sbjct: 537 LYNSSGRQAEAAKVV-----ETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIY 591
Query: 668 ALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPIRIM 727
+ L ++ E GY+ E +L D+D++ ++ + HSE+LA++ GL+++ P++I
Sbjct: 592 QKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQIT 651
Query: 728 KNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773
++ R+C DCH +K I+ + RE+++RDA RFHHFK G CSC DYW
Sbjct: 652 QSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 292 bits (750), Expect = 5e-87
Identities = 139/374 (37%), Positives = 214/374 (57%), Gaps = 21/374 (5%)
Query: 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNM 471
T + AC AL K +H HV R N +L +Y C M+ A++ F N
Sbjct: 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NS 549
Query: 472 TERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM 531
E+D+ SW+ ++TG+ +G G AV++F++ ++G+ PD+ FI + ACS G V +G+
Sbjct: 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609
Query: 532 LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRM 591
+F SM + Y I P++KHY +VD+LG G L EA FI KMP+ PD VW L+N CR+
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI 669
Query: 592 HGNLELGDRCAEIVEQLDPSRL-------NEKSKAGLVPVNASELAK----EKENKKL-- 638
H ++ELG+ A+ + +LDP+ + N + AG E+A+ +EN
Sbjct: 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG----KWDEVARVRKTMRENGLTVD 725
Query: 639 ASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGY-IPETRFVLHDIDQEG 697
+ +EV+ KVH + D SHP+ +I ++ G +MK +G E+ + D +
Sbjct: 726 PGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM--DEIEVS 783
Query: 698 KEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAK 757
K++ HSERLA++ GL+++ PI + KNL +C +CH+ +K ISKIV RE+ +RD +
Sbjct: 784 KDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTE 843
Query: 758 RFHHFKDGLCSCRD 771
+FHHFKDG CSC D
Sbjct: 844 QFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 8e-25
Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 11/218 (5%)
Query: 384 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPL 443
G + G+ E +E+ + + + DL T + ++ AC + +H +V + +
Sbjct: 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321
Query: 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFK 503
VS N +++MY S +A VFS M +D SW MI+G+ KNGL + A++ ++ +
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME 381
Query: 504 QAGLKPDDQIFIGVFSACSALGDVVEGM-LHFESMSK---DYGIVPSMKHYVSIVDMLGS 559
Q + PD+ V SAC+ LGD+ G+ LH + K Y +V + ++++M
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN-----ALIEMYSK 436
Query: 560 TGYLDEALEFIEKMPMEPDVDVWEKLMN-LCRMHGNLE 596
+D+ALE +P E DV W ++ L + E
Sbjct: 437 CKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFE 473
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 1e-22
Identities = 49/125 (39%), Positives = 72/125 (57%), Gaps = 19/125 (15%)
Query: 646 VRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQE------GKE 699
V S+ + +GD SHP + L ++K G +PET+ + HD+D E K
Sbjct: 4 VWSEGKKTLSGDGSHPTSK------EELFQRIKVEGVVPETKEIGHDVDAEEFRDNGIKG 57
Query: 700 EALLAHSERLAVSHGLLSSPARAPIRIMKNL-RVCGDCHSALKIISKIVGRELIIRDAKR 758
+ L +H+E+ A+++GLL RI+K L R+CGDCH + I+K GRE+I+RD R
Sbjct: 58 KLLASHAEKQALAYGLL------TTRIIKVLKRMCGDCHEFFRYIAKYTGREIIVRDPSR 111
Query: 759 FHHFK 763
FHHFK
Sbjct: 112 FHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 2e-20
Identities = 47/164 (28%), Positives = 82/164 (50%)
Query: 367 AEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKAL 426
AS SS + + QL L G++++A+++L +++ + VD + L + C +A+
Sbjct: 43 VAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAV 102
Query: 427 EEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGF 486
EE V L V N +L M+ + A+ VF M ERDL SW+ ++ G+
Sbjct: 103 EEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGY 162
Query: 487 AKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEG 530
AK G ++A+ ++ + AG++PD F V C + D+ G
Sbjct: 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 2e-18
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 5/218 (2%)
Query: 381 QLDGLVKEGKVKEAIEVLGLLEKQC-ISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL 439
Q++ LV G+ +EA+E+ +LE C ++ T+ L++AC K++ KAV+ HVE
Sbjct: 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS 152
Query: 440 LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIF 499
N +L M+ +C + DA +F M ER+L SW T+I G G +A +F
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212
Query: 500 SQFKQAGLKPDDQIFIGVFSACSALGDVVEG-MLHFESMSKDYGIVPSMKHYVSIVDMLG 558
+ + G + + F+ + A + LG G LH G+V +++DM
Sbjct: 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH--CCVLKTGVVGDTFVSCALIDMYS 270
Query: 559 STGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLE 596
G +++A + MP E W ++ +HG E
Sbjct: 271 KCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHGYSE 307
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 4e-18
Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 4/211 (1%)
Query: 384 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPL 443
G K G EA+ + + + D+ TF +++ CG L + VH HV R L
Sbjct: 161 GYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL 220
Query: 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFK 503
V N ++ MY +C + A VF M RD SW+ MI+G+ +NG + +++F +
Sbjct: 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR 280
Query: 504 QAGLKPDDQIFIGVFSACSALGDVVEGM-LHFESMSKDYGIVPSMKHYVSIVDMLGSTGY 562
+ + PD V SAC LGD G +H + + + S+ S++ M S G
Sbjct: 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV--CNSLIQMYLSLGS 338
Query: 563 LDEALEFIEKMPMEPDVDVWEKLMNLCRMHG 593
EA + +M + D W +++ +G
Sbjct: 339 WGEAEKVFSRMETK-DAVSWTAMISGYEKNG 368
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 2e-16
Identities = 71/254 (27%), Positives = 116/254 (45%), Gaps = 22/254 (8%)
Query: 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441
+ G K G +A+E L+E+ +S D T + ++ AC L+ +HE ER
Sbjct: 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420
Query: 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQ 501
V N +++MYS+C +D A VF N+ E+D+ SW ++I G N +A+ F Q
Sbjct: 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ 480
Query: 502 FKQAGLKPDDQIFIGVFSACSALGDVVEGM-LHFESMSKDYGI---VPSMKHYVSIVDML 557
LKP+ I SAC+ +G ++ G +H + G +P+ +++D+
Sbjct: 481 ML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN-----ALLDLY 534
Query: 558 GSTGYLDEAL-EFIEKMPMEPDVDVWEKLMNLCRMHGN----LELGDRCAEIVEQLDP-- 610
G ++ A +F E DV W L+ HG +EL +R E D
Sbjct: 535 VRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591
Query: 611 --SRLNEKSKAGLV 622
S L S++G+V
Sbjct: 592 FISLLCACSRSGMV 605
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 47/225 (20%), Positives = 100/225 (44%), Gaps = 5/225 (2%)
Query: 384 GLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPL 443
GLV G +EA + + + + TF +++A + + +H V +
Sbjct: 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257
Query: 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFK 503
++ MYS+C ++DA VF M E+ +W++M+ G+A +G E+A+ ++ + +
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317
Query: 504 QAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYL 563
+G+ D F + S L + + + G + ++VD+ G +
Sbjct: 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRM 376
Query: 564 DEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608
++A ++MP + ++ W L+ HG G + E+ E++
Sbjct: 377 EDARNVFDRMPRK-NLISWNALIAGYGNHG---RGTKAVEMFERM 417
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 9e-10
Identities = 52/240 (21%), Positives = 102/240 (42%), Gaps = 19/240 (7%)
Query: 387 KEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEH---VERLLSPL 443
K GKV EV + + ++ TF L+ C A+A + AKA + + + P
Sbjct: 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC--ARAGQVAKAFGAYGIMRSKNVKPD 541
Query: 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTER------DLTSWDTMITGFAKNGLGEDAVD 497
RV +N ++ + ++D AF V + M D + ++ A G + A +
Sbjct: 542 RV-VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600
Query: 498 IFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDML 557
++ + +K +++ ++CS GD + ++ M K G+ P + ++VD+
Sbjct: 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVA 659
Query: 558 GSTGYLDEALEFIEKMP---MEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN 614
G G LD+A E ++ ++ + LM C N + + E+ E + +L
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK---KALELYEDIKSIKLR 716
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-07
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
Query: 389 GKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL-LSPLRVST 447
G + +A E+L KQ I + ++S LM AC +AK ++A ++E ++ + L P VST
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVST 721
Query: 448 YNGILKMYSECDSMDDAFSVFSNMTERDLT----SWDTMITGFAKNGLGEDAVDIFSQFK 503
N ++ E + + A V S M L ++ ++ + + +D+ SQ K
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781
Query: 504 QAGLKPD 510
+ G+KP+
Sbjct: 782 EDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 5e-06
Identities = 55/244 (22%), Positives = 117/244 (47%), Gaps = 23/244 (9%)
Query: 380 EQLDG---LVKEGKVKEAIEVLGLLEKQ-CISVDLPTFSQLMQACGDAKALEEAKAVHEH 435
E +D L+++G++K+ I++L +EK+ + +D ++ +AC +A++EA
Sbjct: 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFR---- 427
Query: 436 VERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTS----WDTMITGFAKNGL 491
+L+ +ST+N ++ + + +D A V + E L + + T+I+ AK+G
Sbjct: 428 FAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487
Query: 492 GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM-SKDYGIVPSMKHY 550
+ ++F + AG++ + F + C+ G V + + M SK+ + P +
Sbjct: 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN--VKPDRVVF 545
Query: 551 VSIVDMLGSTGYLDEALEFIEKM-----PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIV 605
+++ G +G +D A + + +M P++PD LM C G + DR E+
Sbjct: 546 NALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV---DRAKEVY 602
Query: 606 EQLD 609
+ +
Sbjct: 603 QMIH 606
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD 511
+++T+I G K G E+A+++F + K+ G++PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 2e-04
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 475 DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD 511
D+ +++T+I G+ K G E+A+ +F++ K+ G+KP+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNV 38
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 3e-04
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 445 VSTYNGILKMYSECDSMDDAFSVFSNMTER----DLTSWDTMITGFAK 488
V TYN ++ Y + +++A +F+ M +R ++ ++ +I G K
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 476 LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP 509
L +++ ++ AK G + A+ + + K +GLKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 9/30 (30%), Positives = 23/30 (76%)
Query: 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGL 507
+++++I+G+ K G E+A+++F + K+ G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 773 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.72 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.7 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.6 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.58 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.34 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.16 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.15 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.07 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.07 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.06 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.06 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.06 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.03 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.03 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.0 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.0 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.0 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.99 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.97 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.94 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.9 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.88 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.8 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.76 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.7 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.66 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.64 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.61 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.58 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.53 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.51 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.51 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.5 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.5 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.49 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.46 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.46 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.42 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.4 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.29 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.28 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 98.26 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.23 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 98.2 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.12 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.11 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 98.1 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.09 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.04 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.02 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.02 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.02 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.94 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.9 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.9 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 97.88 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.88 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.85 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.83 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.82 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.81 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.79 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.78 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 97.77 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 97.77 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.76 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.73 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 97.72 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 97.71 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.65 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.64 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.59 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.56 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.54 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 97.51 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.48 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.48 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.46 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 97.43 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.4 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.4 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 97.39 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.38 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.31 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.28 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 97.27 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.27 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.26 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.25 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.23 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.22 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.13 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.11 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.07 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.07 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.01 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.01 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.0 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.0 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.99 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.98 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 96.97 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.97 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 96.93 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.92 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 96.92 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 96.9 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.89 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.82 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 96.8 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 96.76 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.73 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.72 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.71 | |
| PLN02789 | 320 | farnesyltranstransferase | 96.68 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 96.67 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.67 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 96.66 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.63 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.63 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 96.62 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.6 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.59 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 96.58 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.57 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 96.56 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.55 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.55 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.52 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 96.46 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.41 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.35 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 96.26 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.23 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.23 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 96.22 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.2 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.2 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.07 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 96.04 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 96.03 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.02 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.94 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 95.9 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.85 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 95.84 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 95.77 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 95.7 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.59 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.58 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 95.58 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 95.56 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.55 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 95.54 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 95.54 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.52 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.43 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 95.4 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.36 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 95.31 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 95.28 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 95.21 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 95.11 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 95.06 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.02 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.99 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.97 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.95 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.87 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 94.71 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.69 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 94.68 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 94.67 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 94.66 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 94.44 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.27 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 94.27 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 94.27 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 94.14 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 94.14 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.95 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 93.76 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 93.69 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 93.49 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.35 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.26 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.16 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 93.1 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 92.89 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 92.88 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.63 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 92.59 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.47 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 92.35 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.22 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 92.1 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 92.07 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 91.93 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 91.89 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.88 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 91.85 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 91.54 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.46 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 91.41 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.38 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 91.05 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 90.96 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.82 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 90.62 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.51 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.38 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 90.14 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 89.75 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 89.56 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.48 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 89.44 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.07 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 89.0 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 88.98 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 88.8 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 88.6 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 87.91 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.72 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.67 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.6 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 87.27 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 86.75 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.73 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 85.67 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 85.2 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 85.16 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 84.92 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 84.68 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 84.47 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 84.16 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 83.82 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 83.49 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 83.37 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 82.41 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 82.29 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 82.17 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 81.78 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 81.76 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 81.72 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 81.52 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 80.03 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-85 Score=785.36 Aligned_cols=443 Identities=31% Similarity=0.567 Sum_probs=426.8
Q ss_pred HhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhh------ccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004114 331 YQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQN------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQ 404 (773)
Q Consensus 331 f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~ 404 (773)
......++..+.+.|+.+|..++++||++|+++|++++|.++|.. ..+..||.+|++.|++++|+++|++|.+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 344466788889999999999999999999999999999998743 23446999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHH
Q 004114 405 CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMIT 484 (773)
Q Consensus 405 Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ 484 (773)
|+.||..||+++|.+|++.|.+++|+++|..|++.|+.||..+|++||++|+|+|++++|+++|++|.+||+++||+||.
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHH
Q 004114 485 GFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564 (773)
Q Consensus 485 ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~ 564 (773)
+|+++|+.++|+++|++|.+.|+.||.+||++||.+|++.|++++|.++|+.|.+++|+.|+..+|++||++|+++|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc-------hHHHHcCCchh--hhhHHHHHhcc
Q 004114 565 EALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL-------NEKSKAGLVPV--NASELAKEKEN 635 (773)
Q Consensus 565 eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~-------~~y~~aG~~~~--~v~~lmk~~~l 635 (773)
+|.++|++|+++|+..+|++||.+|+.+|+++.|+.+++.+.+++|++. +.|...|+|.+ .+.+.|+++++
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999864 67999999975 45677999999
Q ss_pred cccccccEEEEcCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCcchheeccchhhHHHHHHHHHHHHHHHHcC
Q 004114 636 KKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVSHGL 715 (773)
Q Consensus 636 ~k~~~~s~ie~~~~v~~f~~g~~~hp~~~ei~~~l~~L~~~Mke~G~~Pd~~~~l~~v~~~~k~~~l~~hse~LA~a~gl 715 (773)
++.|+++||++.+.+|.|.+|+.+||..++|+.++++|..+|++.||+||+.++++++++++|++.++.|||+||+||||
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l 639 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGL 639 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceeeeechhccccccchhHHhhhccCceEEEecCCcccccCCcccCccCCC
Q 004114 716 LSSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRDYW 773 (773)
Q Consensus 716 i~~~~~~~i~ivknlr~cgdch~a~k~is~~~~r~iivrd~~r~h~f~~G~csc~d~w 773 (773)
+.++++.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|||
T Consensus 640 ~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 640 INTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred ccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-81 Score=765.42 Aligned_cols=441 Identities=32% Similarity=0.564 Sum_probs=423.9
Q ss_pred HHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhh------ccHHHHHHHHHHcCCHHHHHHHHHHH
Q 004114 328 RRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQN------NGTLEQLDGLVKEGKVKEAIEVLGLL 401 (773)
Q Consensus 328 ~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~------~~~~~LI~a~~~~G~~~eAl~lf~~M 401 (773)
.+.++.+.+++..+.+.|+.|+..++++||++|+++|++++|.++|.. ..+..||.+|++.|+.++|+++|++|
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456677888999999999999999999999999999999999998642 23446999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHH
Q 004114 402 EKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDT 481 (773)
Q Consensus 402 ~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~ 481 (773)
.. +++||..||+++|.+|++.|.++.++++|..|++.|+.+|..++++||++|+|+|++++|+++|++| .+|+++||+
T Consensus 482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~ 559 (857)
T PLN03077 482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNI 559 (857)
T ss_pred Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHH
Confidence 86 5999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCC
Q 004114 482 MITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG 561 (773)
Q Consensus 482 LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G 561 (773)
||.+|+++|+.++|+++|++|.+.|++||.+||++||.+|++.|++++|.++|+.|.+++|+.|+..||++||++|+++|
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999978899999999999999999999
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc-------hHHHHcCCchh--hhhHHHHH
Q 004114 562 YLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL-------NEKSKAGLVPV--NASELAKE 632 (773)
Q Consensus 562 ~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~-------~~y~~aG~~~~--~v~~lmk~ 632 (773)
++++|.+++++|+++||..+|++||.+|..+|+.+.|+.+++.+.+++|++. +.|+.+|+|.+ ++++.|++
T Consensus 640 ~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 640 KLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999985 67899999984 57889999
Q ss_pred hcccccccccEEEEcCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCcchheeccchhhHHHHHHHHHHHHHHH
Q 004114 633 KENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEALLAHSERLAVS 712 (773)
Q Consensus 633 ~~l~k~~~~s~ie~~~~v~~f~~g~~~hp~~~ei~~~l~~L~~~Mke~G~~Pd~~~~l~~v~~~~k~~~l~~hse~LA~a 712 (773)
++++|.|++|||++.+++|.|.+|+.+||..++||.+|++|..+|++.||+||+..++ ++++++|++.++.||||||+|
T Consensus 720 ~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a 798 (857)
T PLN03077 720 NGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIA 798 (857)
T ss_pred cCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888 557789999999999999999
Q ss_pred HcCccCCCCCceeeeechhccccccchhHHhhhccCceEEEecCCcccccCCcccCccC
Q 004114 713 HGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELIIRDAKRFHHFKDGLCSCRD 771 (773)
Q Consensus 713 ~gli~~~~~~~i~ivknlr~cgdch~a~k~is~~~~r~iivrd~~r~h~f~~G~csc~d 771 (773)
|||+.++++.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|
T Consensus 799 ~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 799 FGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=448.44 Aligned_cols=430 Identities=19% Similarity=0.246 Sum_probs=350.2
Q ss_pred HhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhc------cHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004114 331 YQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNN------GTLEQLDGLVKEGKVKEAIEVLGLLEKQ 404 (773)
Q Consensus 331 f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~------~~~~LI~a~~~~G~~~eAl~lf~~M~~~ 404 (773)
+....+++..+++.|+.||+.++++||++|+++|++++|.++|..+ .+..||.+|++.|++++|+++|++|.+.
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 3455678889999999999999999999999999999999987533 3446999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHH
Q 004114 405 CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMIT 484 (773)
Q Consensus 405 Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ 484 (773)
|+.||..||+++|.+|++.|+++.|.++|..|++.|+.||..+|++||++|+++|++++|+++|++|.+||+++||+||.
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~ 362 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHH
Q 004114 485 GFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564 (773)
Q Consensus 485 ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~ 564 (773)
+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+. |+.|+..+|++||++|+++|+++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999876 99999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCc------hHHHHcCCchhh--hhHHHHHhcc
Q 004114 565 EALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL-DPSRL------NEKSKAGLVPVN--ASELAKEKEN 635 (773)
Q Consensus 565 eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el-~p~~~------~~y~~aG~~~~~--v~~lmk~~~l 635 (773)
+|.++|++|. ++|+++|++||.+|++.|+.++|..+++.|.+. .|+.. .+++..|.+... +...+...++
T Consensus 442 ~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 442 KALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 9999999997 689999999999999999999999999988643 45442 334444444211 1111111111
Q ss_pred cccccc--cEEE-----------------EcCEEEE---EEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCcchheecc
Q 004114 636 KKLASQ--NLLE-----------------VRSKVHE---YRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDI 693 (773)
Q Consensus 636 ~k~~~~--s~ie-----------------~~~~v~~---f~~g~~~hp~~~ei~~~l~~L~~~Mke~G~~Pd~~~~l~~v 693 (773)
...... ..|. ....+.. ...+...|...++ +.+++++|++.|+.||..++...+
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~----A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSM----AVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCcccHHHHH
Confidence 110000 0000 0000000 1123333444444 345668899999999999987777
Q ss_pred chh---hHHHHHHHHHHHHHHHHcCccCCCCCceeeeechhccccccchhHHhhhccCce------EEEecCCcccccCC
Q 004114 694 DQE---GKEEALLAHSERLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIVGRE------LIIRDAKRFHHFKD 764 (773)
Q Consensus 694 ~~~---~k~~~l~~hse~LA~a~gli~~~~~~~i~ivknlr~cgdch~a~k~is~~~~r~------iivrd~~r~h~f~~ 764 (773)
.++ ++.+.....++.+...+|+.+...+.. ++++.+..+|+..+|.++|.+|+-.+ .++..|+.+.+.+.
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Confidence 666 455556667777777888876655554 78999999999999999999997543 44566766666665
Q ss_pred ccc
Q 004114 765 GLC 767 (773)
Q Consensus 765 G~c 767 (773)
|+.
T Consensus 676 ~e~ 678 (857)
T PLN03077 676 GEL 678 (857)
T ss_pred HHH
Confidence 544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=424.54 Aligned_cols=418 Identities=17% Similarity=0.217 Sum_probs=340.7
Q ss_pred HHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhc------cHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004114 329 RQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNN------GTLEQLDGLVKEGKVKEAIEVLGLLE 402 (773)
Q Consensus 329 ~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~------~~~~LI~a~~~~G~~~eAl~lf~~M~ 402 (773)
+.++.+..++..|++.|+.||+.+++.||++|+++|++++|.++|..+ .+..||.+|++.|++++|+++|++|.
T Consensus 137 ~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 137 KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345556788999999999999999999999999999999999987543 34569999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHH
Q 004114 403 KQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTM 482 (773)
Q Consensus 403 ~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~L 482 (773)
+.|+.||..||+++|.+|+..|.++.+.++|..|.+.|+.+|..+|++||++|+|+|++++|.++|++|.++|+++||+|
T Consensus 217 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~l 296 (697)
T PLN03081 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSM 296 (697)
T ss_pred HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCC
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGY 562 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~ 562 (773)
|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.+++..|.+. |+.||..+|++||++|+++|+
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGR 375 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999887 999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCc------hHHHHcCCchhhhhHHHHH--
Q 004114 563 LDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL--DPSRL------NEKSKAGLVPVNASELAKE-- 632 (773)
Q Consensus 563 l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el--~p~~~------~~y~~aG~~~~~v~~lmk~-- 632 (773)
+++|.++|++|. +||+.+|++||.+|+++|+.++|.++++.|.+. .|+.. .++...|.+.. +..+.+.
T Consensus 376 ~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~-a~~~f~~m~ 453 (697)
T PLN03081 376 MEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ-GWEIFQSMS 453 (697)
T ss_pred HHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH-HHHHHHHHH
Confidence 999999999997 689999999999999999999999999999874 56553 56778888754 3333322
Q ss_pred --hcccccccccEEEEcCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCcchheeccchhhHHHH---HHHHHH
Q 004114 633 --KENKKLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGKEEA---LLAHSE 707 (773)
Q Consensus 633 --~~l~k~~~~s~ie~~~~v~~f~~g~~~hp~~~ei~~~l~~L~~~Mke~G~~Pd~~~~l~~v~~~~k~~~---l~~hse 707 (773)
.++.+.... ... .+.+.......++.+ +.+++.++.|+..++...+.+|.+... .....+
T Consensus 454 ~~~g~~p~~~~----y~~----li~~l~r~G~~~eA~-------~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 454 ENHRIKPRAMH----YAC----MIELLGREGLLDEAY-------AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HhcCCCCCccc----hHh----HHHHHHhcCCHHHHH-------HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 233221110 011 111112223334333 234456788988776555555533222 222223
Q ss_pred HHHHHHcCccCCCCCceeeeechhccccccchhHHhhhccCceEEE-------ecCCcccccCCccc
Q 004114 708 RLAVSHGLLSSPARAPIRIMKNLRVCGDCHSALKIISKIVGRELII-------RDAKRFHHFKDGLC 767 (773)
Q Consensus 708 ~LA~a~gli~~~~~~~i~ivknlr~cgdch~a~k~is~~~~r~iiv-------rd~~r~h~f~~G~c 767 (773)
+ .+++.+.....-+.+++.+..+|+..+|.+++..|..+.+-. .-....|.|.-|-.
T Consensus 519 ~---l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 519 K---LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred H---HhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 2 245554444555677888999999999999999999887431 22245566765543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=425.39 Aligned_cols=415 Identities=16% Similarity=0.232 Sum_probs=332.0
Q ss_pred HHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhcc----------HHHHHHHHHHcCCHHHHHHHHH
Q 004114 330 QYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNG----------TLEQLDGLVKEGKVKEAIEVLG 399 (773)
Q Consensus 330 ~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~----------~~~LI~a~~~~G~~~eAl~lf~ 399 (773)
.++.+..++..|.+.|+.||..+|++||.+|+++|++++|.++|..+. +..||.+|++.|++++|+++|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 345567888899999999999999999999999999999999864332 2359999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc----
Q 004114 400 LLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVER--LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---- 473 (773)
Q Consensus 400 ~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k--~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---- 473 (773)
+|.+.|+.||..||++||.+|++.|++++|.++|++|.+ .|+.||..+|++||++|+++|++++|+++|++|.+
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999987 58999999999999999999999999999999985
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhH
Q 004114 474 RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSI 553 (773)
Q Consensus 474 ~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~L 553 (773)
|+.++|++||.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|++++|.++|+.|.+. |+.|+..+|++|
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~~tynsL 690 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSL 690 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHH
Confidence 4779999999999999999999999999999999999999999999999999999999999999876 999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCc------hHHHHcCCc
Q 004114 554 VDMLGSTGYLDEALEFIEKM---PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL--DPSRL------NEKSKAGLV 622 (773)
Q Consensus 554 I~~y~r~G~l~eA~~lf~~M---~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el--~p~~~------~~y~~aG~~ 622 (773)
|.+|+++|++++|.++|++| ++.||..+|++||.+|++.|++++|.++++.|.+. .|+.. ..+...|.+
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999 78999999999999999999999999999999765 45542 456777776
Q ss_pred hhh--hhHHHHHhcccccccc--cEE-----------EEcCEEEEEEeCCCCCccH-HHHHHHHHHHHHHHHHcCcccCc
Q 004114 623 PVN--ASELAKEKENKKLASQ--NLL-----------EVRSKVHEYRAGDTSHPET-DKIYALIRGLRAQMKEAGYIPET 686 (773)
Q Consensus 623 ~~~--v~~lmk~~~l~k~~~~--s~i-----------e~~~~v~~f~~g~~~hp~~-~ei~~~l~~L~~~Mke~G~~Pd~ 686 (773)
... +...|...++...... +.+ .+...+..|..+ ++.. ..-..++-.|+++|++.|++||.
T Consensus 771 e~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g---~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG---RPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc---ccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 532 2233444444332210 000 111111122111 1111 11123455788999999999999
Q ss_pred chheeccchhhHHHHHHHHHHHHHHHHcCccCCCCCce--eeeechhcccc-ccchhHHhhhccCceEE
Q 004114 687 RFVLHDIDQEGKEEALLAHSERLAVSHGLLSSPARAPI--RIMKNLRVCGD-CHSALKIISKIVGRELI 752 (773)
Q Consensus 687 ~~~l~~v~~~~k~~~l~~hse~LA~a~gli~~~~~~~i--~ivknlr~cgd-ch~a~k~is~~~~r~ii 752 (773)
.++...+ .|-........+..+-..+++....++... .+++.+ +. -..|..++..|..+.|+
T Consensus 848 ~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 848 EVLSQVL-GCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHHHHH-HHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCC
Confidence 8877666 332222223345566666776666555442 234433 22 24799999988877643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=390.94 Aligned_cols=335 Identities=17% Similarity=0.244 Sum_probs=262.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhhhh----------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSSQN----------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQL 416 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~~~----------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~L 416 (773)
.||..+|+.||.+|++.|++++|.+++.. ..+..||.+|++.|++++|+++|++|.+.|+.||..||++|
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 38888999999999999999988887532 22335889999999999999999999988888999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh------cCCHhHHHHHHHHHHHcC
Q 004114 417 MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT------ERDLTSWDTMITGFAKNG 490 (773)
Q Consensus 417 L~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~------~~d~~tyn~LI~ay~~~G 490 (773)
|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||.++|++||.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999888889999999999999999999999999998885 368889999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHH
Q 004114 491 LGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFI 570 (773)
Q Consensus 491 ~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf 570 (773)
++++|+++|++|.+.|+.|+..+|++||.+|++.|++++|.++|++|.+. |+.||..+|++||++|++.|++++|.++|
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999899999999999999999999999999999998776 88999889999999999999999999999
Q ss_pred HhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCc------hHHHHcCCchhhhh--HHHHHhcccc
Q 004114 571 EKM---PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL--DPSRL------NEKSKAGLVPVNAS--ELAKEKENKK 637 (773)
Q Consensus 571 ~~M---~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el--~p~~~------~~y~~aG~~~~~v~--~lmk~~~l~k 637 (773)
++| ++.||..+|++||.+|++.|++++|.++++.|.+. .|+.. ..|...|.+.+... ..|+..++.+
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 888 77889999999999999999999998888888764 44432 56677777754322 2233344333
Q ss_pred cccccEEEEcCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCcchheeccc
Q 004114 638 LASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDID 694 (773)
Q Consensus 638 ~~~~s~ie~~~~v~~f~~g~~~hp~~~ei~~~l~~L~~~Mke~G~~Pd~~~~l~~v~ 694 (773)
.... +...+ .+...... +.....++..|++.|+.||..++...++
T Consensus 753 d~~T----y~sLL----~a~~k~G~----le~A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 753 NTIT----YSILL----VASERKDD----ADVGLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred CHHH----HHHHH----HHHHHCCC----HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2111 00000 11111112 3345567788888888888776554443
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-25 Score=203.34 Aligned_cols=106 Identities=58% Similarity=1.019 Sum_probs=95.9
Q ss_pred cccEEEEcCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCcchheeccchhhH--------HHHHHHHHHHHHH
Q 004114 640 SQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMKEAGYIPETRFVLHDIDQEGK--------EEALLAHSERLAV 711 (773)
Q Consensus 640 ~~s~ie~~~~v~~f~~g~~~hp~~~ei~~~l~~L~~~Mke~G~~Pd~~~~l~~v~~~~k--------~~~l~~hse~LA~ 711 (773)
+++|+++ |.|.+|+.+||.. .+..+|+..||.|++..+.++++++.+ +..++.||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 5788876 9999999999987 445677889999999999988877655 5688999999999
Q ss_pred HHcCccCCCCCceeeeech-hccccccchhHHhhhccCceEEEecCCcccccC
Q 004114 712 SHGLLSSPARAPIRIMKNL-RVCGDCHSALKIISKIVGRELIIRDAKRFHHFK 763 (773)
Q Consensus 712 a~gli~~~~~~~i~ivknl-r~cgdch~a~k~is~~~~r~iivrd~~r~h~f~ 763 (773)
||||+.+ +|+||+ |||+|||+|+|+||++.+|+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999988 899999 999999999999999999999999999999996
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-15 Score=164.35 Aligned_cols=284 Identities=13% Similarity=0.102 Sum_probs=211.8
Q ss_pred chHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhh-------------ccHHHHHHHHHHcCCHHHHHHHHHH
Q 004114 334 NPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQN-------------NGTLEQLDGLVKEGKVKEAIEVLGL 400 (773)
Q Consensus 334 ~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~-------------~~~~~LI~a~~~~G~~~eAl~lf~~ 400 (773)
+......+++.. ..+..++..+...|.+.|++++|..++.. ..+..+...|.+.|++++|+.+|.+
T Consensus 54 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 132 (389)
T PRK11788 54 AIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQ 132 (389)
T ss_pred HHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 333344444332 23456788888999999999999885321 1123467888899999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHhhc--C
Q 004114 401 LEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR----VSTYNGILKMYSECDSMDDAFSVFSNMTE--R 474 (773)
Q Consensus 401 M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd----~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~ 474 (773)
+.+.. ..+..++..++..+.+.|++++|.+++..+.+.+..+. ...+..+...+.+.|++++|+.+|+++.+ |
T Consensus 133 ~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 211 (389)
T PRK11788 133 LVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP 211 (389)
T ss_pred HHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc
Confidence 98752 34677888899999999999999999999888654332 22456677788889999999999998864 3
Q ss_pred -CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhH
Q 004114 475 -DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSI 553 (773)
Q Consensus 475 -d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~L 553 (773)
+...+..+...|.+.|++++|+++|+++...+......++..++.+|...|++++|..+++++.+. .|+...+..+
T Consensus 212 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~l 288 (389)
T PRK11788 212 QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLAL 288 (389)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHH
Confidence 456788888899999999999999999887542222456788888999999999999999888654 4677777888
Q ss_pred HHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHH--cCCCCchHHHHcCCc
Q 004114 554 VDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRM---HGNLELGDRCAEIVEQ--LDPSRLNEKSKAGLV 622 (773)
Q Consensus 554 I~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~---~G~~e~A~~~~e~m~e--l~p~~~~~y~~aG~~ 622 (773)
+.+|.+.|++++|.++++++ ...|+..++..++..+.. .|+.+++..+++.+.+ +.|+....+...|..
T Consensus 289 a~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~~cg~~ 363 (389)
T PRK11788 289 AQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCRNCGFT 363 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECCCCCCC
Confidence 89999999999999999876 557888888888887765 4577788777776654 344433445555544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-14 Score=159.96 Aligned_cols=249 Identities=15% Similarity=0.094 Sum_probs=154.8
Q ss_pred HHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHH
Q 004114 360 CKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVD---LPTFSQLMQACGDAKALE 427 (773)
Q Consensus 360 y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd---~~ty~~LL~a~~~~g~le 427 (773)
+...|++++|...+. +.....+...+.+.|++++|+.+++.+......++ ..++..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 445566666666431 11122355666777777777777777766432221 234566666677777777
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC--------HhHHHHHHHHHHHcCChHHHHHHH
Q 004114 428 EAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERD--------LTSWDTMITGFAKNGLGEDAVDIF 499 (773)
Q Consensus 428 ~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d--------~~tyn~LI~ay~~~G~~deAl~Lf 499 (773)
+|..+|..+.+.. +.+..++..++.+|.+.|++++|+++|+.+.+.+ ...|..+...+.+.|++++|+.+|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7777777776642 3355667777777777777777777777765321 113455666666777777777777
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC
Q 004114 500 SQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP 577 (773)
Q Consensus 500 ~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P 577 (773)
+++.+.. |+ ..++..+...+.+.|++++|.++|+++.+. .-.....++..|+.+|.+.|++++|.++++++ ...|
T Consensus 204 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 204 KKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7776542 33 345566666777777777777777776543 11111345666777777777777777777766 3456
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 578 DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 578 d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
+..++..+...+.+.|+++.|..+++.+.+..|++
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 65556666777777777777777777666666654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-12 Score=157.79 Aligned_cols=259 Identities=13% Similarity=0.041 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHhhhh---------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 350 GMMASQVLNNCKHEDDFAEASRSSQN---------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQAC 420 (773)
Q Consensus 350 ~~~~n~LI~~y~k~g~~~~A~~v~~~---------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~ 420 (773)
..++..+...+...|++++|..++.. ..+..+...+.+.|+.++|+.+|.++.+.. ..+...+..+...+
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYY 577 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHH
Confidence 34455555666666666666554211 111124555555666666666666655442 22344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHH
Q 004114 421 GDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVD 497 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~ 497 (773)
...|++++|..+++.+.+.. +.+..+|..+..+|.+.|++++|+..|+++.+ .+...|..+..+|...|++++|+.
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 56666666666665555432 33455555566666666666666666655542 144455555556666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCC
Q 004114 498 IFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PME 576 (773)
Q Consensus 498 Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~ 576 (773)
+|+++.+.. ..+..++..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.|+.+ ...
T Consensus 657 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 657 SLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 665555431 122445555555555566666666666555443 2334445555555555666666666655554 333
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 577 PDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 577 Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
|+..++..+..++...|++++|...++.+.+..|.+.
T Consensus 734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 770 (899)
T TIGR02917 734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDA 770 (899)
T ss_pred CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 4445555555555555666655555555555555553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-12 Score=153.77 Aligned_cols=262 Identities=14% Similarity=0.064 Sum_probs=201.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhhhh---------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSSQN---------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLM 417 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~~~---------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL 417 (773)
+.+..++..+...|.+.|+.++|...+.. .....++..|.+.|++++|+.+++++.+. ...+..+|..+.
T Consensus 530 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~ 608 (899)
T TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLG 608 (899)
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHH
Confidence 34667788888888889999888886421 22234778888889999999998888765 345677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHH
Q 004114 418 QACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGED 494 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~de 494 (773)
.++...|++++|...+..+++.. +.+...+..+..+|.+.|++++|..+|+++.+ .+..+|..++..+...|++++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 687 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTES 687 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 88888888999998888888764 33566788888888888888888888888763 257788888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-
Q 004114 495 AVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM- 573 (773)
Q Consensus 495 Al~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M- 573 (773)
|+.+++.|.... ..+..++..+...+...|++++|...|..+... .|+..++..+..++.+.|++++|.+.++.+
T Consensus 688 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 763 (899)
T TIGR02917 688 AKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWL 763 (899)
T ss_pred HHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888888887764 345566777777888888888888888877553 355567777888888888888888888776
Q ss_pred -CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch
Q 004114 574 -PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN 614 (773)
Q Consensus 574 -~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~ 614 (773)
....+..++..+...|...|++++|...++.+.+..|+++.
T Consensus 764 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 805 (899)
T TIGR02917 764 KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV 805 (899)
T ss_pred HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH
Confidence 22335677777777888888888888888888888877753
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-09 Score=131.03 Aligned_cols=258 Identities=11% Similarity=0.030 Sum_probs=189.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhhh---------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQN---------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQA 419 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~~---------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a 419 (773)
+...+..+..++...|++++|...+.. .....+...+...|++++|+..++++...... +...+..+ ..
T Consensus 109 ~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~ 186 (656)
T PRK15174 109 QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LS 186 (656)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HH
Confidence 445677778888888998888875321 11123677788889999999988888665322 22233223 34
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHH--
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGED-- 494 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~de-- 494 (773)
+...|++++|..+++.+++....++...+..+..++.+.|+.++|+..|+++.+ | +...+..+...|...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhH
Confidence 677888999999888887764333444555567788888999999999988764 2 66778888888899999885
Q ss_pred --HHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHHHHHH
Q 004114 495 --AVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEALEFI 570 (773)
Q Consensus 495 --Al~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf 570 (773)
|+..|++..+. .|+ ..++..+...+...|++++|..++++..+. .|+ ...+..+..+|.+.|++++|.+.|
T Consensus 267 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 267 LQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 78888888774 454 457788888888899999999988887653 344 456667788888999999999998
Q ss_pred HhC-CCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 571 EKM-PMEPDVDVW-EKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 571 ~~M-~~~Pd~~ty-~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
+.+ ...|+...+ ..+..++...|+.++|...++.+.+..|++.
T Consensus 342 ~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 342 VQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 877 345664433 3345678888999999999999888888764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-09 Score=130.47 Aligned_cols=288 Identities=10% Similarity=-0.007 Sum_probs=195.0
Q ss_pred HhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHH
Q 004114 331 YQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLL 401 (773)
Q Consensus 331 f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M 401 (773)
+..+..+...++...-.. ....-.|..++...|+.++|...+. ...+..+...+.+.|++++|++.|+++
T Consensus 58 ~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~A 136 (656)
T PRK15174 58 TDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQA 136 (656)
T ss_pred cchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333344444443333222 3334444455566888888888532 112233667778888888888888888
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC----CH
Q 004114 402 EKQCISV-DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER----DL 476 (773)
Q Consensus 402 ~~~Gv~P-d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~----d~ 476 (773)
.+. .| +...+..+..++...|++++|...+..+...... +...+..+ ..+.+.|++++|+.+++.+.+. +.
T Consensus 137 l~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~ 212 (656)
T PRK15174 137 WLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQ 212 (656)
T ss_pred HHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcch
Confidence 765 34 4556777788888888888888888877665432 23333333 3467788888888888887643 23
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHH----HHHHHHHHHHhcCCCC-Ccchhh
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVE----GMLHFESMSKDYGIVP-SMKHYV 551 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~de----A~~if~~M~~~~Gi~P-d~~tyn 551 (773)
..+..+..++...|++++|+..|+++.+.. .-+...+..+-.++...|+.++ |..+|++..+. .| +...+.
T Consensus 213 ~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~ 288 (656)
T PRK15174 213 ESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVT 288 (656)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHH
Confidence 344555677888888888888888888753 2235566777788888888875 67778777543 34 456778
Q ss_pred hHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch-------HHHHcCCc
Q 004114 552 SIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN-------EKSKAGLV 622 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~-------~y~~aG~~ 622 (773)
.+..+|.+.|++++|...+++. ...|+ ..++..+..++...|++++|...++.+.+..|.... .+...|..
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~ 368 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKT 368 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCH
Confidence 8888888899999998888876 34454 556777788888889999998888888888888742 24455555
Q ss_pred hhhhh
Q 004114 623 PVNAS 627 (773)
Q Consensus 623 ~~~v~ 627 (773)
...+.
T Consensus 369 deA~~ 373 (656)
T PRK15174 369 SEAES 373 (656)
T ss_pred HHHHH
Confidence 44433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-11 Score=95.37 Aligned_cols=50 Identities=28% Similarity=0.602 Sum_probs=47.9
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 004114 474 RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA 523 (773)
Q Consensus 474 ~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~ 523 (773)
||+++||+||.+|++.|++++|+++|++|++.|++||..||++||.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999975
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.5e-08 Score=116.52 Aligned_cols=263 Identities=11% Similarity=0.028 Sum_probs=194.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCC-C---------
Q 004114 346 NIQNGMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQC-I--------- 406 (773)
Q Consensus 346 l~pd~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~G-v--------- 406 (773)
+.|+...|..+..+|.+.|++++|+..+. ...+..+-.+|...|++++|+.-|....... .
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV 235 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 45788889999999999999999998421 1122236778889999999987664432211 0
Q ss_pred ------------------CC----CHHHHHHHH---------------------------HH------HHhcCCHHHHHH
Q 004114 407 ------------------SV----DLPTFSQLM---------------------------QA------CGDAKALEEAKA 431 (773)
Q Consensus 407 ------------------~P----d~~ty~~LL---------------------------~a------~~~~g~le~A~~ 431 (773)
.| ........+ .. ....+.+++|.+
T Consensus 236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~ 315 (615)
T TIGR00990 236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315 (615)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence 01 000000000 00 011246788889
Q ss_pred HHHHHHHhC-CCC-CHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004114 432 VHEHVERLL-SPL-RVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG 506 (773)
Q Consensus 432 l~~~m~k~G-~~p-d~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G 506 (773)
+|+..++.+ ..| ....+..+...+...|++++|+..|++..+ | ...+|..+...+...|++++|+..|++..+..
T Consensus 316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 395 (615)
T TIGR00990 316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN 395 (615)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 998888764 223 455778888888899999999999998764 3 45678888889999999999999999987753
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHH
Q 004114 507 LKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWE 583 (773)
Q Consensus 507 v~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~ 583 (773)
.-+..+|..+...+...|++++|...|+...+ +.| +...+..+..++.+.|++++|+..|++. ...|+ ...|.
T Consensus 396 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~ 471 (615)
T TIGR00990 396 -SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID---LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYN 471 (615)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 22456788888889999999999999988765 344 4566777888899999999999999876 44454 67888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 584 KLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 584 ~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
.+..++...|++++|...++...++.|..
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 88889999999999999999999998864
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.9e-08 Score=113.97 Aligned_cols=220 Identities=16% Similarity=0.064 Sum_probs=176.5
Q ss_pred CCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhCCChHHHH
Q 004114 389 GKVKEAIEVLGLLEKQC-ISV-DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR-VSTYNGILKMYSECDSMDDAF 465 (773)
Q Consensus 389 G~~~eAl~lf~~M~~~G-v~P-d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd-~~tynaLI~ay~k~G~l~eA~ 465 (773)
+++++|+++|++..+.+ ..| ....|..+...+...|++++|+..++..++. .|+ ...|..+..+|...|++++|+
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 57889999999998765 334 3456777777788999999999999999885 344 568888999999999999999
Q ss_pred HHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhc
Q 004114 466 SVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDY 541 (773)
Q Consensus 466 ~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~ 541 (773)
..|++..+ .+..+|..+...|...|++++|+..|++.++. .|+ ...+..+..++.+.|++++|+.+|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 99998764 36788999999999999999999999999875 454 556777888889999999999999988664
Q ss_pred CCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCH--------HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 542 GIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDV--------DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 542 Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~--------~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
.+-+...|+.+..+|...|++++|.+.|+.. .+.|+. ..++..+..+...|++++|..+++...+++|++
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 2335678889999999999999999999885 333421 112222233444699999999999999999988
Q ss_pred ch
Q 004114 613 LN 614 (773)
Q Consensus 613 ~~ 614 (773)
..
T Consensus 542 ~~ 543 (615)
T TIGR00990 542 DI 543 (615)
T ss_pred HH
Confidence 53
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.1e-07 Score=116.92 Aligned_cols=259 Identities=12% Similarity=0.129 Sum_probs=151.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHhhhh----c----c---H------------HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004114 348 QNGMMASQVLNNCKHEDDFAEASRSSQN----N----G---T------------LEQLDGLVKEGKVKEAIEVLGLLEKQ 404 (773)
Q Consensus 348 pd~~~~n~LI~~y~k~g~~~~A~~v~~~----~----~---~------------~~LI~a~~~~G~~~eAl~lf~~M~~~ 404 (773)
.+..++..|-.+|.+.|+.++|+..+.. . . + ..+-..+.+.|++++|++.|+++.+.
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3677888899999999999999985310 0 0 0 01234567899999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-----------------------------
Q 004114 405 CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMY----------------------------- 455 (773)
Q Consensus 405 Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay----------------------------- 455 (773)
. +.+...+..+..++...|++++|++.|+++++... .+...+..|...|
T Consensus 381 ~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 381 D-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3 23556777788889999999999999999987632 2333444444433
Q ss_pred -------------HhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 004114 456 -------------SECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVF 518 (773)
Q Consensus 456 -------------~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL 518 (773)
...|+.++|++.|++..+ | +...+..+...|.+.|++++|+.+|+++.+. .|+ ...+..+.
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~a 536 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYG 536 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHH
Confidence 344555555555555442 2 3344445555555555555555555555442 122 22222222
Q ss_pred HHHHcCCChHHHHHHHHHHHHhcCCCCCc---------chhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004114 519 SACSALGDVVEGMLHFESMSKDYGIVPSM---------KHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLC 589 (773)
Q Consensus 519 ~a~~~~G~~deA~~if~~M~~~~Gi~Pd~---------~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~ 589 (773)
..+...++.++|..+++.+... ...+.. ..+..+...+...|+.++|.++++.-+ .+...+..|...+
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~ 613 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRIDLTLADWA 613 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHH
Confidence 2334455555555555543211 000000 011123344555666666666666332 2334455566667
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCc
Q 004114 590 RMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 590 ~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
...|+.++|..+++.+.+++|+++
T Consensus 614 ~~~g~~~~A~~~y~~al~~~P~~~ 637 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTREPGNA 637 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCH
Confidence 777777777777777777777764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-08 Score=114.55 Aligned_cols=277 Identities=16% Similarity=0.134 Sum_probs=143.9
Q ss_pred HHHHHhhchHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHhhhh----ccH-----HHHHHHHHHcCCHHHHHH
Q 004114 327 SRRQYQQNPNEGQYQSYSGNIQ-NGMMASQVLNNCKHEDDFAEASRSSQN----NGT-----LEQLDGLVKEGKVKEAIE 396 (773)
Q Consensus 327 a~~~f~~~~~~~~~m~~~gl~p-d~~~~n~LI~~y~k~g~~~~A~~v~~~----~~~-----~~LI~a~~~~G~~~eAl~ 396 (773)
.++.++.+......+++. .| .+..|..|..++...|+.+.|...+.. +.. ..+-.-+-..|++++|..
T Consensus 128 erg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH
Confidence 334455444444444332 23 234566666777777777776664211 110 001122223455666666
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHhh--
Q 004114 397 VLGLLEKQCISVD-LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR-VSTYNGILKMYSECDSMDDAFSVFSNMT-- 472 (773)
Q Consensus 397 lf~~M~~~Gv~Pd-~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd-~~tynaLI~ay~k~G~l~eA~~lf~~M~-- 472 (773)
.+.+..+. .|. .+.|+.|--.+-..|++.+|.+-|++.++. .|+ ...|-.|-..|...+.+++|...+.+..
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 55555443 222 234555555555566666666666666553 232 3345555555666666666666555443
Q ss_pred cC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchh
Q 004114 473 ER-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHY 550 (773)
Q Consensus 473 ~~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~ty 550 (773)
.| ..+.|..|...|-..|.+|-|+..|++.++ +.|+ ...|+.|..|+-..|++.+|.+.|.....- ..-.....
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam 357 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAM 357 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHH
Confidence 22 344455555555555666666666665554 2343 235666666666666666666666554332 11123445
Q ss_pred hhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 551 VSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 551 n~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
+.|-..|...|.+++|..+|... .+-|. ....+.|...|...|++++|...+++..++.|.-.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence 55555666666666666665544 34444 34455555556666666666666666666655544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-07 Score=111.39 Aligned_cols=265 Identities=11% Similarity=0.018 Sum_probs=187.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhhhh---------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSSQN---------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLM 417 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~~~---------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL 417 (773)
..+...+..+..++.+.|++++|..++.. .....+...+...|++++|+.++++..+.. +.+.. +..+.
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la 123 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALA 123 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHH
Confidence 34455688899999999999999986421 112247788889999999999999998762 33445 77788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHH----------------------------
Q 004114 418 QACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFS---------------------------- 469 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~---------------------------- 469 (773)
.++...|+.++|+..++++++.... +..++..+..++.+.+..++|++.++
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 8888999999999999999986432 45555667777777676665555444
Q ss_pred ------------------Hhhc-----CCHh-HH----HHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 004114 470 ------------------NMTE-----RDLT-SW----DTMITGFAKNGLGEDAVDIFSQFKQAGLK-PDDQIFIGVFSA 520 (773)
Q Consensus 470 ------------------~M~~-----~d~~-ty----n~LI~ay~~~G~~deAl~Lf~eM~~~Gv~-Pd~~Ty~~LL~a 520 (773)
.+.+ |+.. .+ ...+.++...|++++|+..|+++.+.+-. |+..- ..+..+
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHH
Confidence 3321 1110 01 11133456778999999999999887642 44322 224668
Q ss_pred HHcCCChHHHHHHHHHHHHhcCCCC--CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-------------C---HHH
Q 004114 521 CSALGDVVEGMLHFESMSKDYGIVP--SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-------------D---VDV 581 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~~~~Gi~P--d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-------------d---~~t 581 (773)
+...|++++|+.+|+.+.+.....+ .......|..++...|++++|.++++.+ ...| + ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 8899999999999998765311111 1234566777889999999999999988 2222 2 234
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchH
Q 004114 582 WEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 582 y~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
+..+...+...|++++|+.+++.+.+..|.+..+
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l 395 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGL 395 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 5566778889999999999999999999998643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-08 Score=109.41 Aligned_cols=221 Identities=14% Similarity=0.230 Sum_probs=167.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHH-HHHHHHHHHh-------------------C
Q 004114 383 DGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGD--AKALEEA-KAVHEHVERL-------------------L 440 (773)
Q Consensus 383 ~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~--~g~le~A-~~l~~~m~k~-------------------G 440 (773)
.-....|.++++.-+|+.|...|+..+...--.|+..-+- ..++--| .+-|-.|.+. -
T Consensus 123 ~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~ 202 (625)
T KOG4422|consen 123 LKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFET 202 (625)
T ss_pred HHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhh
Confidence 3445678999999999999999988887776666654332 1111111 1112222211 1
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 004114 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIG 516 (773)
Q Consensus 441 ~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~ 516 (773)
.+-+..+|.+||.++||--.++.|.+++.+-.+. +..+||.+|.+-.-. ...+|+.+|....++||..||++
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHH
Confidence 3446679999999999999999999999988743 778999998765533 23789999999999999999999
Q ss_pred HHHHHHcCCChHHH----HHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHH-HHHHHHhC----------CCCC-CHH
Q 004114 517 VFSACSALGDVVEG----MLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDE-ALEFIEKM----------PMEP-DVD 580 (773)
Q Consensus 517 LL~a~~~~G~~deA----~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~e-A~~lf~~M----------~~~P-d~~ 580 (773)
||.+.++.|+++.| .+++.+|++ .|+.|...+|..+|..+++.++..+ |..++.++ ++.| |-.
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999988765 467788855 5999999999999999999988755 44444433 3444 467
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 581 VWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 581 ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
.+.+.+..|.+..+.+.|..+..++...
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg 385 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTG 385 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcC
Confidence 7888999999999999999999888653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-07 Score=113.13 Aligned_cols=193 Identities=9% Similarity=0.018 Sum_probs=126.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC-------HhHHHHHHHHHHHc
Q 004114 418 QACGDAKALEEAKAVHEHVERLLSP-LRVSTYNGILKMYSECDSMDDAFSVFSNMTERD-------LTSWDTMITGFAKN 489 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~G~~-pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d-------~~tyn~LI~ay~~~ 489 (773)
.++...+++++|+..|+.+++.+.+ |+. .--.+..+|...|++++|+.+|+++.+.+ ...+..|..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3445667777888888777776532 222 11224567777788888888877765321 23455566677777
Q ss_pred CChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHH
Q 004114 490 GLGEDAVDIFSQFKQAG-----------LKPDD---QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVD 555 (773)
Q Consensus 490 G~~deAl~Lf~eM~~~G-----------v~Pd~---~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~ 555 (773)
|++++|+.+++++.... -.|+. ..+..+...+...|++++|+++++++... .+-+...+..+..
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~ 401 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYAS 401 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 88888888877776542 11231 23445556667778888888877777554 3334566777777
Q ss_pred HHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 556 MLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 556 ~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
++...|+.++|++.+++. .+.|+ ...+..+...+...|+++.|+.+++.+.+..|+++
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 777788888888887766 44565 45555666667777788888888888887777775
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-08 Score=113.15 Aligned_cols=228 Identities=11% Similarity=0.150 Sum_probs=182.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVD-LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR-VSTYNGILKMYSEC 458 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd-~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd-~~tynaLI~ay~k~ 458 (773)
|-..|-..+.+++|+..+.+... ..|+ .+.|..|...|-..|.+|.|...+++.++. .|+ ...|+.|..++-..
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDK 333 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhc
Confidence 34444445555666666555544 3453 456777777777889999999999988875 344 56899999999999
Q ss_pred CChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCChHHHHHHH
Q 004114 459 DSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD-QIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 459 G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~-~Ty~~LL~a~~~~G~~deA~~if 534 (773)
|++.+|++.+..... | -..+.+.|-..|...|++++|..+|....+ +-|.. ..++.|...|-..|++++|+..|
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence 999999999988774 3 456788899999999999999999988776 55663 47888999999999999999999
Q ss_pred HHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 535 ESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 535 ~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
++.. .|+|+ ...|+.|-..|-..|+++.|.+.+.+. .+.|. ....+.|...+...|++.+|...++...+++|+
T Consensus 412 keal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 412 KEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 8764 47786 478888888999999999999998876 66676 567888999999999999999999999999999
Q ss_pred CchHHH
Q 004114 612 RLNEKS 617 (773)
Q Consensus 612 ~~~~y~ 617 (773)
.+++|.
T Consensus 489 fpdA~c 494 (966)
T KOG4626|consen 489 FPDAYC 494 (966)
T ss_pred Cchhhh
Confidence 986654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.3e-07 Score=115.66 Aligned_cols=222 Identities=14% Similarity=0.110 Sum_probs=169.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISV-DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~P-d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
+...+...|++++|++.|++.++. .| +...+..+...+.+.|++++|..+++.+++.. +.+...+-.+...+.+.+
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCC
Confidence 445667889999999999988875 34 45567778888889999999999999888753 224445555555677788
Q ss_pred ChHHHHHHHHHhhcC----CH---------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 460 SMDDAFSVFSNMTER----DL---------TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 460 ~l~eA~~lf~~M~~~----d~---------~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
+.++|+..++.+... +. ..+..+...+...|+.++|+.+++. ...+...+..+...+.+.|+
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCC
Confidence 999999998887532 11 1123456678889999999998872 23445566778888899999
Q ss_pred hHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHH
Q 004114 527 VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEI 604 (773)
Q Consensus 527 ~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~ 604 (773)
.++|+.+|+...+. -+.+...+..|+.+|...|+.++|++.++.. ...|+ ..++..+..++...|++++|..+++.
T Consensus 619 ~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 619 YAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999988764 2335778889999999999999999999987 34443 56677788888899999999999999
Q ss_pred HHHcCCCC
Q 004114 605 VEQLDPSR 612 (773)
Q Consensus 605 m~el~p~~ 612 (773)
+.+..|++
T Consensus 697 al~~~~~~ 704 (1157)
T PRK11447 697 LIPQAKSQ 704 (1157)
T ss_pred HhhhCccC
Confidence 98876544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.2e-08 Score=119.14 Aligned_cols=226 Identities=10% Similarity=0.012 Sum_probs=166.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSV 467 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~l 467 (773)
.++..+|+..|.+.... .|+......+..++...|++++|...++.+... +|+...+..+..++.+.|+.++|..+
T Consensus 489 ~~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 489 DTLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred hCCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 37888888877777665 466555444455556888999999998887553 44445566677788888999999999
Q ss_pred HHHhhcCCHhHHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCC
Q 004114 468 FSNMTERDLTSWD---TMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIV 544 (773)
Q Consensus 468 f~~M~~~d~~tyn---~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~ 544 (773)
|++..+.+...+. .+...+.+.|++++|+..|++..+. .|+...+..+..++.+.|+.++|+..+.+..+. .
T Consensus 565 l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~ 639 (987)
T PRK09782 565 LQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL---E 639 (987)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---C
Confidence 8877754322222 2333444558999999999888763 577778888888888999999999888887553 4
Q ss_pred C-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcCC
Q 004114 545 P-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGL 621 (773)
Q Consensus 545 P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG~ 621 (773)
| +...+..|-.++...|+.++|.+++++. ...| +...+..+-.++...|++++|+..++...+++|+...+....|.
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~ 719 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPE 719 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhH
Confidence 5 4566777777888899999999988876 4455 46778888888899999999999999999998888655555554
Q ss_pred c
Q 004114 622 V 622 (773)
Q Consensus 622 ~ 622 (773)
+
T Consensus 720 ~ 720 (987)
T PRK09782 720 Q 720 (987)
T ss_pred H
Confidence 4
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-07 Score=100.72 Aligned_cols=259 Identities=11% Similarity=0.096 Sum_probs=181.9
Q ss_pred HHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004114 328 RRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCIS 407 (773)
Q Consensus 328 ~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~ 407 (773)
.-.|....++...|+...+.||..|+|+|+.+.++.|+++.|+. .|++++.+|++-|+.
T Consensus 251 ~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~---------------------aalqil~EmKeiGVe 309 (625)
T KOG4422|consen 251 ASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK---------------------AALQILGEMKEIGVE 309 (625)
T ss_pred HHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH---------------------HHHHHHHHHHHhCCC
Confidence 33455557788889999999999999999999999999998888 378899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHh--C--C----CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC----
Q 004114 408 VDLPTFSQLMQACGDAKALE-EAKAVHEHVERL--L--S----PLRVSTYNGILKMYSECDSMDDAFSVFSNMTER---- 474 (773)
Q Consensus 408 Pd~~ty~~LL~a~~~~g~le-~A~~l~~~m~k~--G--~----~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---- 474 (773)
|...+|..+|...++.++.. .|..+..++... | + +-|...+..-|+.|....+.+-|..+-.-....
T Consensus 310 PsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~ 389 (625)
T KOG4422|consen 310 PSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK 389 (625)
T ss_pred cchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh
Confidence 99999999999998887753 344455444432 2 2 234566777888888889999998887766532
Q ss_pred ----C---HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCc
Q 004114 475 ----D---LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSM 547 (773)
Q Consensus 475 ----d---~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~ 547 (773)
+ ..-|.-+....|+....+..+.+|+.|.-.-+-|...|...++.|....+.++-..+++..|+. +|..-..
T Consensus 390 ~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~ 468 (625)
T KOG4422|consen 390 FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRS 468 (625)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhH
Confidence 1 2346677888888888999999999998777788889999999999989988888888888754 3533333
Q ss_pred chhhhHHHHHHhCC---------CHH-----HHHHHHH-------hC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004114 548 KHYVSIVDMLGSTG---------YLD-----EALEFIE-------KM-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIV 605 (773)
Q Consensus 548 ~tyn~LI~~y~r~G---------~l~-----eA~~lf~-------~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m 605 (773)
..-.-++..+++.. .+. -|..+++ +| ...-.....+.++-.+.+.|..++|.+++.++
T Consensus 469 ~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 469 DLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 33333333444332 010 1111221 12 11223445555566667778888888877777
Q ss_pred HHc
Q 004114 606 EQL 608 (773)
Q Consensus 606 ~el 608 (773)
.+-
T Consensus 549 ~~~ 551 (625)
T KOG4422|consen 549 LRK 551 (625)
T ss_pred Hhc
Confidence 543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-09 Score=117.00 Aligned_cols=211 Identities=18% Similarity=0.159 Sum_probs=68.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 004114 387 KEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFS 466 (773)
Q Consensus 387 ~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~ 466 (773)
..+++++|++.++++...+.. +...+..++.. ...+++++|..++....+.. ++...+..++..|.+.++++++.+
T Consensus 56 ~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~ 131 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEE 131 (280)
T ss_dssp ------------------------------------------------------------------H-HHHTT-HHHHHH
T ss_pred ccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHH
Confidence 345555666666655544322 23334444444 45555555555555443332 233344455555555566666666
Q ss_pred HHHHhhc-----CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 004114 467 VFSNMTE-----RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKD 540 (773)
Q Consensus 467 lf~~M~~-----~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~ 540 (773)
+++.+.. .+...|..+...+.+.|+.++|+++|++..+. .|+ ......++..+...|+.+++..++....+.
T Consensus 132 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 132 LLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp HHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 5555431 24445555555555666666666666655553 343 334455555555556555555555555443
Q ss_pred cCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004114 541 YGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIV 605 (773)
Q Consensus 541 ~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m 605 (773)
.+.+...+..+..+|...|+.++|+.+|++. ...| |..+...+..++...|+.++|.++.+.+
T Consensus 210 --~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 210 --APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp ---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred --CcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2334445555555566666666666665554 1122 4455555555555666665555554433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.7e-10 Score=86.74 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 408 VDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 408 Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
||.++|++||++|++.|++++|.++|++|.+.|+.||..||++||++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999885
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-09 Score=114.58 Aligned_cols=238 Identities=16% Similarity=0.198 Sum_probs=103.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTF-SQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty-~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
+...+.+.|++++|++++++.......|+...| ..+...+-..++.+.|...++.+...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 456677889999999999665544323444444 44444556788999999999999987543 55567777777 6889
Q ss_pred ChHHHHHHHHHhhc--CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004114 460 SMDDAFSVFSNMTE--RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG-LKPDDQIFIGVFSACSALGDVVEGMLHFES 536 (773)
Q Consensus 460 ~l~eA~~lf~~M~~--~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G-v~Pd~~Ty~~LL~a~~~~G~~deA~~if~~ 536 (773)
+.++|.++++..-+ ++...+..++..+.+.++++++..+++++.... ...+...|..+...+.+.|+.++|++++++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999987643 466778889999999999999999999987643 345667788888889999999999999999
Q ss_pred HHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 537 MSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM--PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 537 M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
..+. .| +......++..+...|+.++|.++++.. ....|...|..+..++...|+.++|...++...+..|+++
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 8764 45 4778889999999999999988888776 1234556788999999999999999999999999999997
Q ss_pred h-------HHHHcCCch
Q 004114 614 N-------EKSKAGLVP 623 (773)
Q Consensus 614 ~-------~y~~aG~~~ 623 (773)
. ++...|...
T Consensus 249 ~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKD 265 (280)
T ss_dssp HHHHHHHHHHT------
T ss_pred ccccccccccccccccc
Confidence 3 344555553
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-07 Score=93.79 Aligned_cols=193 Identities=15% Similarity=0.123 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHc
Q 004114 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKN 489 (773)
Q Consensus 413 y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~ 489 (773)
+..+...+...|++++|...++++++.. +.+...+..+...|...|++++|++.|++..+ .+...+..+...|...
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 3333444444444444444444444332 11233444444444445555555555444432 1333444444555555
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHH
Q 004114 490 GLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALE 568 (773)
Q Consensus 490 G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~ 568 (773)
|++++|+..|++.......| ....+..+..++...|++++|...+.+..+. .+.+...+..+...+...|++++|.+
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555554432111 1223444445555556666666665555432 11223445555566666666666666
Q ss_pred HHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 569 FIEKM-PM-EPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 569 lf~~M-~~-~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
++++. .. ..+...+..+...+...|+.+.|..+.+.+.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 66554 11 123444445555666666666666665555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-07 Score=92.69 Aligned_cols=189 Identities=13% Similarity=0.082 Sum_probs=157.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
.+...|...|++++|++.|+++.+.. +-+...+..+...+...|++++|.+.+...++.. +.+...+..+...|...|
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcc
Confidence 47788899999999999999998763 3346678888889999999999999999998875 335677888899999999
Q ss_pred ChHHHHHHHHHhhcC-----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 004114 460 SMDDAFSVFSNMTER-----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 460 ~l~eA~~lf~~M~~~-----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if 534 (773)
++++|++.|++..+. ....|..+...+...|++++|...|.+...... .+...+..+...+...|++++|..++
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~ 192 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDARAYL 192 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999988642 345677788899999999999999999887532 24567888888999999999999999
Q ss_pred HHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 535 ESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 535 ~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
++.... .+.+...+..++..+...|+.++|..+.+.+
T Consensus 193 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 193 ERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 998765 3345667778888899999999999988765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-06 Score=99.25 Aligned_cols=244 Identities=10% Similarity=-0.007 Sum_probs=150.5
Q ss_pred HHHHhcCChhHHHHhhhh------cc-HH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004114 358 NNCKHEDDFAEASRSSQN------NG-TL---EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALE 427 (773)
Q Consensus 358 ~~y~k~g~~~~A~~v~~~------~~-~~---~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le 427 (773)
.+....|+.+.|...+.. +. .. .....+...|++++|++.++++.+.. +-+...+..+..++.+.|+++
T Consensus 126 ~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 126 EAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHH
Confidence 333566777777664311 11 00 11345566777777777777776653 224556666677777777777
Q ss_pred HHHHHHHHHHHhCCCCCH-------HHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHH
Q 004114 428 EAKAVHEHVERLLSPLRV-------STYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVD 497 (773)
Q Consensus 428 ~A~~l~~~m~k~G~~pd~-------~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~ 497 (773)
+|.+++..+.+.+..++. .+|..++....+..+.+...++++.+++ .+.....++..++...|+.++|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777776543221 1233334444444455666666666543 366667777777777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCC
Q 004114 498 IFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PME 576 (773)
Q Consensus 498 Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~ 576 (773)
++++..+. .||.. ..++.+....++.+++.+..+...+. .+-|...+.++-.++.+.+++++|.+.|+.+ ...
T Consensus 285 ~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 285 IILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 77777663 34442 11233334557777777777777654 2234455667777777788888888887776 556
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 577 PDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 577 Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
|+..++..|..++.+.|+.++|..+++.-..+
T Consensus 359 P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 359 PDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777777777888877777777655443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5e-07 Score=111.83 Aligned_cols=257 Identities=6% Similarity=-0.105 Sum_probs=197.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhh------hccHHH--HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQ------NNGTLE--QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQAC 420 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~------~~~~~~--LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~ 420 (773)
+..++..|-.++.. ++.++|...+. ...... +...+.+.|++++|+..|+++... .|+...+..+..++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 56677777777776 78888887421 111112 344556899999999999998654 45555666777788
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh--cCCHhHHHHHHHHHHHcCChHHHHHH
Q 004114 421 GDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT--ERDLTSWDTMITGFAKNGLGEDAVDI 498 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~--~~d~~tyn~LI~ay~~~G~~deAl~L 498 (773)
.+.|++++|..++...++.. +.....+..+...+.+.|++++|+..|++.. .|+...|..+...+.+.|+.++|+..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 89999999999999998865 2233344444455556799999999999887 47888999999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCC
Q 004114 499 FSQFKQAGLKPDD-QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PME 576 (773)
Q Consensus 499 f~eM~~~Gv~Pd~-~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~ 576 (773)
|++.... .|+. ..+..+-.++...|+.++|+.+|+...+. -+-+...+..+..+|.+.|++++|+..|++. .+.
T Consensus 632 l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 632 LRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999885 4654 45677777899999999999999988664 2235678889999999999999999999987 666
Q ss_pred CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 577 PDV-DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 577 Pd~-~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
|+. .+.-..-....+..+++.|.+.++....+.|...
T Consensus 708 P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 708 DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 763 4444455556667778888888888888887765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-07 Score=108.01 Aligned_cols=215 Identities=16% Similarity=0.121 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhCCChH-HHHH
Q 004114 390 KVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL--SPLRVSTYNGILKMYSECDSMD-DAFS 466 (773)
Q Consensus 390 ~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G--~~pd~~tynaLI~ay~k~G~l~-eA~~ 466 (773)
+..+|+.+|.+.... +.=+..+...+-++|...++.++|+++|+.+.+.- ..-+..+|.++|--+-+.=.+. -|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 467889999885443 33344677788889999999999999999988762 1225667777765444321111 1222
Q ss_pred HHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC
Q 004114 467 VFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP 545 (773)
Q Consensus 467 lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P 545 (773)
+.+.+ .-...||.++-.+|...++.+.|++.|++..+ +.| ...+|+.+-.-+.....+|.|+..|... +..
T Consensus 413 Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A-----l~~ 484 (638)
T KOG1126|consen 413 LIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA-----LGV 484 (638)
T ss_pred HHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhh-----hcC
Confidence 32222 23568999999999999999999999998877 456 5678888877777788888998888654 456
Q ss_pred CcchhhhH---HHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 546 SMKHYVSI---VDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 546 d~~tyn~L---I~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
|..+|+++ --.|.|.++++.|+-.|.+. .+-| +.++...+...+.+.|+.|+|.+++++...++|.++
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 77788765 45688999999999999877 5666 466777777888889999999999999999998885
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.4e-06 Score=96.75 Aligned_cols=257 Identities=11% Similarity=0.027 Sum_probs=181.7
Q ss_pred CCCHHH-HHHHHHHHHhcCChhHHHHhhhh------c-c-HHH--HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004114 347 IQNGMM-ASQVLNNCKHEDDFAEASRSSQN------N-G-TLE--QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQ 415 (773)
Q Consensus 347 ~pd~~~-~n~LI~~y~k~g~~~~A~~v~~~------~-~-~~~--LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~ 415 (773)
.|+..+ +-....++...|+.+.|...+.. . . ... ....+.+.|+++.|++.++++.+.. +-+..++..
T Consensus 114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~l 192 (409)
T TIGR00540 114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKL 192 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 454433 33445777888999999886422 1 1 111 3566677999999999999999874 225667889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHH-------HHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHH
Q 004114 416 LMQACGDAKALEEAKAVHEHVERLLSPLRVST-------YNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITG 485 (773)
Q Consensus 416 LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~t-------ynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~a 485 (773)
+..++...|++++|.+++..+.+.+....... +..+++.-......+...++++..++ .+...+-.+...
T Consensus 193 l~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~ 272 (409)
T TIGR00540 193 AEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEH 272 (409)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999875433222 11112111222334455555655553 388899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCC
Q 004114 486 FAKNGLGEDAVDIFSQFKQAGLKPDDQIF---IGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGY 562 (773)
Q Consensus 486 y~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty---~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~ 562 (773)
+...|+.++|++++++..+. .||.... ..........++.+.+.+.++...+...-.|+.....+|-..+.+.|+
T Consensus 273 l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~ 350 (409)
T TIGR00540 273 LIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE 350 (409)
T ss_pred HHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc
Confidence 99999999999999999885 3554421 112222234577888888888776642222221455578888999999
Q ss_pred HHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004114 563 LDEALEFIEK--M-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVE 606 (773)
Q Consensus 563 l~eA~~lf~~--M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~ 606 (773)
+++|.+.|+. . ...|+..++..+...+.+.|+.++|.++++...
T Consensus 351 ~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999993 3 668999999999999999999999999888754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-07 Score=106.91 Aligned_cols=172 Identities=14% Similarity=0.095 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQ-IFIGVFSA 520 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~-Ty~~LL~a 520 (773)
..+|.++-.+|.-.++.+.|++.|++...- ...+|+.+-.-+.....+|+|+.-|+..+. +.|+.. +|-.|-..
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTV 498 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhh
Confidence 345555555555555555555555544421 334444444444445555555555544322 222221 33334444
Q ss_pred HHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhH
Q 004114 521 CSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLEL 597 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~ 597 (773)
|.+.++++.|+-+|.+.. .+-| +.+...++...+-+.|+.|+|++++++. -+.| |...--.....+...++.++
T Consensus 499 y~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred eeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 445555555555544332 2333 2333334444445555555555555544 1111 22211122223333444455
Q ss_pred HHHHHHHHHHcCCCCchHHHHcCC
Q 004114 598 GDRCAEIVEQLDPSRLNEKSKAGL 621 (773)
Q Consensus 598 A~~~~e~m~el~p~~~~~y~~aG~ 621 (773)
|...+|+++++-|++..++...|+
T Consensus 576 al~~LEeLk~~vP~es~v~~llgk 599 (638)
T KOG1126|consen 576 ALQELEELKELVPQESSVFALLGK 599 (638)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHH
Confidence 555555555555555444444333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.3e-06 Score=100.33 Aligned_cols=134 Identities=14% Similarity=0.062 Sum_probs=95.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcC----CCCCcchhhhHHHHHH
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYG----IVPSMKHYVSIVDMLG 558 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~G----i~Pd~~tyn~LI~~y~ 558 (773)
|-++...|++.+|++.|+.|...+.+.-..+--.+.++|...+..++|..+|..+....+ ..++......|.-+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 445667788888888888888887654445677888888888888888888888765422 1234444567888888
Q ss_pred hCCCHHHHHHHHHhCC-CC---------------CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 559 STGYLDEALEFIEKMP-ME---------------PDV-DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 559 r~G~l~eA~~lf~~M~-~~---------------Pd~-~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
..+++++|..+++.+. .. ||- .....++..+...|++..|++.++.+....|.+..+.
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~ 453 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLR 453 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 8888888888888871 01 222 2334455667788888888888888888888886443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-06 Score=96.07 Aligned_cols=220 Identities=12% Similarity=0.046 Sum_probs=140.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHH--HHHHHHHHhCCChHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTY--NGILKMYSECDSMDDAF 465 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~ty--naLI~ay~k~G~l~eA~ 465 (773)
.|++++|.+++.+..+..-. ....|.....+..+.|+.+.|.+.+.++.+. .|+...+ ......+...|+.+.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 58888888777665443211 1223333344446778888888888887764 3443222 23356777788888888
Q ss_pred HHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHcCCChHHHHHHHH
Q 004114 466 SVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD-------QIFIGVFSACSALGDVVEGMLHFE 535 (773)
Q Consensus 466 ~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~-------~Ty~~LL~a~~~~G~~deA~~if~ 535 (773)
..++++.+ | +......+...|.+.|++++|++++.++.+.+..++. .+|..++.......+.+....+++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88887764 2 5667777788888888888888888888877655332 234444444444455555666666
Q ss_pred HHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch
Q 004114 536 SMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN 614 (773)
Q Consensus 536 ~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~ 614 (773)
.+.+. .+.+.....++...+.+.|+.++|.+++++. ...||... .++.+....++.+.+...++.+.+..|+++.
T Consensus 254 ~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~ 329 (398)
T PRK10747 254 NQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPL 329 (398)
T ss_pred hCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHH
Confidence 66443 3446667777788888888888888887766 33344422 1233434557777777777777777887764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-06 Score=98.99 Aligned_cols=227 Identities=14% Similarity=0.123 Sum_probs=172.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHh-----CCC-C-CHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQ-----C-ISVDLPTF-SQLMQACGDAKALEEAKAVHEHVERL-----LSP-L-RVS 446 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~-----G-v~Pd~~ty-~~LL~a~~~~g~le~A~~l~~~m~k~-----G~~-p-d~~ 446 (773)
|...|...|+++.|+.+++..++. | ..|...+. ..+-..|...+.+++|..+|+.++.. |-. | -+.
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 788999999999999999887654 2 12333332 33556777889999999999998764 321 1 245
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc----------CCHh-HHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCH-
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE----------RDLT-SWDTMITGFAKNGLGEDAVDIFSQFKQA---GLKPDD- 511 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~----------~d~~-tyn~LI~ay~~~G~~deAl~Lf~eM~~~---Gv~Pd~- 511 (773)
+++.|-.+|.+.|++++|...+++..+ +.+. -.+.++..|+..+++++|..++....+. -+.++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 677788899999999999988876542 1232 4677888899999999999999876542 233443
Q ss_pred ---HHHHHHHHHHHcCCChHHHHHHHHHHHHhc---CC--CC-CcchhhhHHHHHHhCCCHHHHHHHHHhC--------C
Q 004114 512 ---QIFIGVFSACSALGDVVEGMLHFESMSKDY---GI--VP-SMKHYVSIVDMLGSTGYLDEALEFIEKM--------P 574 (773)
Q Consensus 512 ---~Ty~~LL~a~~~~G~~deA~~if~~M~~~~---Gi--~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M--------~ 574 (773)
.+++.|-..|-+.|++++|+++|++..... +- .+ ....++-|-..|.+.+...+|.++|.+- +
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 478999999999999999999999876432 11 12 2456778888999999999999998875 2
Q ss_pred CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 575 MEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 575 ~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
..|+ ..+|..|...|...|++|.|.++.+.+..
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3455 47899999999999999999998887764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.5e-06 Score=97.56 Aligned_cols=210 Identities=10% Similarity=-0.041 Sum_probs=153.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH---------hcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Q 004114 389 GKVKEAIEVLGLLEKQCISVDL-PTFSQLMQACG---------DAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC 458 (773)
Q Consensus 389 G~~~eAl~lf~~M~~~Gv~Pd~-~ty~~LL~a~~---------~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~ 458 (773)
+.+++|+++|++..+. .|+- ..|..+..++. ..+++++|...+++.++.. +-+..++..+-.++...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 3467999999998875 4543 34544444333 2245889999999998864 33677888888889999
Q ss_pred CChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCChHHHHHHH
Q 004114 459 DSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQ-IFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 459 G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~-Ty~~LL~a~~~~G~~deA~~if 534 (773)
|++++|+..|++..+ | +...|..+...|...|++++|+..+++..+.. |+.. .+..++.++...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999998774 4 56678888999999999999999999998854 5432 2333444566789999999999
Q ss_pred HHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 535 ESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVD-VWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 535 ~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~-ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
.++.+. ..|+ ...+..+..+|...|+.++|.+.+.++ +..|+.. .++.|...++..| +.|...++.+.+
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 887654 2343 445677788889999999999999987 4445543 4445555667666 467666666554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-07 Score=108.74 Aligned_cols=91 Identities=16% Similarity=0.225 Sum_probs=84.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC
Q 004114 396 EVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERD 475 (773)
Q Consensus 396 ~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d 475 (773)
.++..|...|+.|+.+||.++|.-||..|+++.|- +|..|.-+.++....+++.++.+...+++.+.|. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56788999999999999999999999999999999 9999998888889999999999999999998887 788
Q ss_pred HhHHHHHHHHHHHcCChHH
Q 004114 476 LTSWDTMITGFAKNGLGED 494 (773)
Q Consensus 476 ~~tyn~LI~ay~~~G~~de 494 (773)
..||+.|..+|..+|++..
T Consensus 83 aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred hhHHHHHHHHHHhccchHH
Confidence 8999999999999999865
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.1e-07 Score=103.74 Aligned_cols=81 Identities=12% Similarity=0.037 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHH----------HHHHHHHcCCHHHHHHHHHHHHHCC
Q 004114 336 NEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLE----------QLDGLVKEGKVKEAIEVLGLLEKQC 405 (773)
Q Consensus 336 ~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~----------LI~a~~~~G~~~eAl~lf~~M~~~G 405 (773)
+.+..+...|+.|+-+||..||.-||..|+++.|- +|.++.+.+ ++.+..++++.+.|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34667788999999999999999999999999998 666665543 556666666665554
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH
Q 004114 406 ISVDLPTFSQLMQACGDAKALEE 428 (773)
Q Consensus 406 v~Pd~~ty~~LL~a~~~~g~le~ 428 (773)
.|-+.||+.|+.+|...||+..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH
Confidence 6788899999999999998644
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.5e-05 Score=92.24 Aligned_cols=267 Identities=10% Similarity=0.013 Sum_probs=199.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhhhhcc-------HH----HHHHHHHHc---------CC---HHHHHHHHHHHHH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSSQNNG-------TL----EQLDGLVKE---------GK---VKEAIEVLGLLEK 403 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~-------~~----~LI~a~~~~---------G~---~~eAl~lf~~M~~ 403 (773)
+-+...+..++.+..+.|-...|.++..... .. ..+.-.++. .+ .+.|+.-++.+..
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 3456777888888888888888888532111 00 122222222 22 3446666666554
Q ss_pred C-CCCCCH-H----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---
Q 004114 404 Q-CISVDL-P----TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER--- 474 (773)
Q Consensus 404 ~-Gv~Pd~-~----ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~--- 474 (773)
. +-.|.. . ...-.|-++...++..+|.+.++.|...|.+.-..+--++.++|...++.++|+.+|.++...
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 2 222322 1 223456678889999999999999999987766668889999999999999999999998532
Q ss_pred ------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHHcCCChHHHHHHH
Q 004114 475 ------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG-------------LKPDDQ-IFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 475 ------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G-------------v~Pd~~-Ty~~LL~a~~~~G~~deA~~if 534 (773)
+......|.-+|...+++++|..++++|.+.- .-||-. .+..++..+...|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34446789999999999999999999998731 113333 3455667788999999999999
Q ss_pred HHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 535 ESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 535 ~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
+.+... -+-+......+.+.+...|+..+|++.++.. .+.|+ ..+...+..+....+++..|+.+.+.+.++.|++
T Consensus 440 e~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 440 EDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 999664 4457888999999999999999999999776 44564 6677788888889999999999999999999999
Q ss_pred chH
Q 004114 613 LNE 615 (773)
Q Consensus 613 ~~~ 615 (773)
...
T Consensus 518 ~~~ 520 (822)
T PRK14574 518 IPS 520 (822)
T ss_pred hhH
Confidence 643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.3e-05 Score=79.56 Aligned_cols=236 Identities=12% Similarity=0.133 Sum_probs=147.8
Q ss_pred HHHHHHHHHHhcCChhHHHHhh---------h----hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004114 352 MASQVLNNCKHEDDFAEASRSS---------Q----NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQ 418 (773)
Q Consensus 352 ~~n~LI~~y~k~g~~~~A~~v~---------~----~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~ 418 (773)
+--+|=+.|-+.|.+|.|+++- . ......|-.-|...|-++.|.++|..+.+.+. --....-.|+.
T Consensus 71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~ 149 (389)
T COG2956 71 AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLN 149 (389)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHH
Confidence 3345667777888888888751 1 11112366777778888888888877776542 13345666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHhhcC--C-HhHHHHHHHHHHHcCC
Q 004114 419 ACGDAKALEEAKAVHEHVERLLSPLR----VSTYNGILKMYSECDSMDDAFSVFSNMTER--D-LTSWDTMITGFAKNGL 491 (773)
Q Consensus 419 a~~~~g~le~A~~l~~~m~k~G~~pd----~~tynaLI~ay~k~G~l~eA~~lf~~M~~~--d-~~tyn~LI~ay~~~G~ 491 (773)
.|-...++++|.++-..+.+.+-.+. ...|.-|...+.-..+++.|+.++.+..+- . +..--.+-..+...|+
T Consensus 150 IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 150 IYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD 229 (389)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc
Confidence 77778888888888887777654433 223455555555667777888887776632 2 2222234456677788
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHH-
Q 004114 492 GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFI- 570 (773)
Q Consensus 492 ~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf- 570 (773)
+..|.+.++...+.+..--..+...|..+|.+.|+.+++...+.++.+. .+....-..|-+.-....-.+.|...+
T Consensus 230 y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 230 YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHH
Confidence 8888888888777654444456677778888888888887777766543 233333344444444444445555444
Q ss_pred HhCCCCCCHHHHHHHHHHHHH
Q 004114 571 EKMPMEPDVDVWEKLMNLCRM 591 (773)
Q Consensus 571 ~~M~~~Pd~~ty~~LI~a~~~ 591 (773)
+.+.-+|+...+..||..-..
T Consensus 307 ~Ql~r~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 307 RQLRRKPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHhhCCcHHHHHHHHHhhhc
Confidence 344557887777777776443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.9e-06 Score=88.09 Aligned_cols=229 Identities=13% Similarity=0.122 Sum_probs=187.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Q 004114 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC 458 (773)
Q Consensus 379 ~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~ 458 (773)
..|-.+|.+.|.+.+|...|..-++. .|-+.||..|-++|-+....+.|+.++.+-++. ++-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34899999999999999999988876 567779999999999999999999999988875 344554445577888889
Q ss_pred CChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 004114 459 DSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFE 535 (773)
Q Consensus 459 G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~ 535 (773)
+..++|.++++...+- ++.+..++..+|.-.++++-|+..|+++++.|+. +...|..+--+|.-.+.+|-++--|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999988753 6677777888999999999999999999999986 56788888888999999999998887
Q ss_pred HHHHhcCCCCC--cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 536 SMSKDYGIVPS--MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 536 ~M~~~~Gi~Pd--~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
+.... --.|+ ..+|-.|-......|++..|.+.|.-. .-.| ....++.|.-.-.+.|+++.|..++.-.....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 76543 22233 456777777788899999999999866 2233 3678888887778999999999988888877775
Q ss_pred C
Q 004114 612 R 612 (773)
Q Consensus 612 ~ 612 (773)
-
T Consensus 462 m 462 (478)
T KOG1129|consen 462 M 462 (478)
T ss_pred c
Confidence 4
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.2e-05 Score=85.89 Aligned_cols=227 Identities=16% Similarity=0.214 Sum_probs=166.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC---------------------HHHHHHHH--------HHHH-------hcCC
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVD---------------------LPTFSQLM--------QACG-------DAKA 425 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd---------------------~~ty~~LL--------~a~~-------~~g~ 425 (773)
...|.+.|+++.|+++++-+.+..-+.- ...|.-+. .+.. ..|+
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCc
Confidence 4568899999999999988865532211 11111110 0010 1367
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh---cCCHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004114 426 LEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT---ERDLTSWDTMITGFAKNGLGEDAVDIFSQF 502 (773)
Q Consensus 426 le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~---~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM 502 (773)
+++|.+.+.+.+...-.-....||+ --.+-+.|++++|+..|-++. ..++.+.--+...|-...+...|++++-+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 8888888888776432222223332 223566789999999987765 346666667788888888999999998554
Q ss_pred HHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHH
Q 004114 503 KQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVD 580 (773)
Q Consensus 503 ~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ 580 (773)
. .+.| |...+.-|...|-+.|+-.+|..++..-.+ =++.+.++..-|...|.....+++|...|++. -+.|+..
T Consensus 585 ~--slip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 585 N--SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred c--ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 3 3445 566788888999999999999887765433 25668889888999999999999999999988 5689999
Q ss_pred HHHHHHHHH-HHcCChhHHHHHHHHHHHcCCCCc
Q 004114 581 VWEKLMNLC-RMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 581 ty~~LI~a~-~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
-|..||..| .+.|++.+|..+++.+.+..|.++
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence 999999866 678999999999999999999886
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.1e-05 Score=83.94 Aligned_cols=221 Identities=13% Similarity=0.053 Sum_probs=158.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 384 GLVKEGKVKEAIEVLGLLEKQC-ISVD--LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 384 a~~~~G~~~eAl~lf~~M~~~G-v~Pd--~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
.....+..+.++.-+.+++... +.|+ ...|..+-.++...|+.++|...|...++.. +.+...|+.+-..|...|+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 3344567788888888888642 2333 3456677777889999999999999998864 3367899999999999999
Q ss_pred hHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 461 l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
+++|+..|++..+ | +..+|..+..++...|++++|++.|++..+. .|+.......+..+...++.++|...|.+.
T Consensus 114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999998874 4 5678888999999999999999999998874 455432222222344567899999999765
Q ss_pred HHhcCCCCCcchhhhHHHHHHhCCCHHHH--HHHHHh-CCC----CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 538 SKDYGIVPSMKHYVSIVDMLGSTGYLDEA--LEFIEK-MPM----EP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 538 ~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA--~~lf~~-M~~----~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
... ..|+...+ .++.. ..|++.++ .+.+.+ ... .| ....|..|-..+...|++++|...+++..+++
T Consensus 192 ~~~--~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEK--LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Hhh--CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 443 33443322 33333 34554433 322221 111 12 24578899999999999999999999999998
Q ss_pred CCC
Q 004114 610 PSR 612 (773)
Q Consensus 610 p~~ 612 (773)
|.+
T Consensus 267 ~~~ 269 (296)
T PRK11189 267 VYN 269 (296)
T ss_pred Cch
Confidence 754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.8e-05 Score=88.08 Aligned_cols=240 Identities=13% Similarity=0.022 Sum_probs=164.4
Q ss_pred HHHHH--HHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 381 QLDGL--VKEGKVKEAIEVLGLLEKQCISVDL-PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 381 LI~a~--~~~G~~~eAl~lf~~M~~~Gv~Pd~-~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
+..|+ ...|+++.|.+.+.+..+. .|+. ..+-....+....|+.+.|.+.+....+.-..+...+.-.....+..
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 44444 4689999999999887665 4553 34445566677889999999999998875433333445556888889
Q ss_pred CCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HcCCChHHHH
Q 004114 458 CDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSAC---SALGDVVEGM 531 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~---~~~G~~deA~ 531 (773)
.|+.+.|...++.+.+ | +...+..+...|...|++++|.+++.++.+.++.+.......-+.++ ...+..+++.
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999984 3 67788899999999999999999999999987643332211111221 2222223333
Q ss_pred HHHHHHHHhc--CCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHH--HHcCChhHHHHHHHHH
Q 004114 532 LHFESMSKDY--GIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVW-EKLMNLC--RMHGNLELGDRCAEIV 605 (773)
Q Consensus 532 ~if~~M~~~~--Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty-~~LI~a~--~~~G~~e~A~~~~e~m 605 (773)
..+..+.+.. ..+.+...+.++...+...|+.++|.+++++. ...||.... -.++..+ ...++.+.+.+.++..
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 3444444331 01237788899999999999999999999987 445554321 0123322 3356778888889989
Q ss_pred HHcCCCCc--hHHHHcCCc
Q 004114 606 EQLDPSRL--NEKSKAGLV 622 (773)
Q Consensus 606 ~el~p~~~--~~y~~aG~~ 622 (773)
.+..|+++ ......|.+
T Consensus 326 lk~~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 326 AKNVDDKPKCCINRALGQL 344 (409)
T ss_pred HHhCCCChhHHHHHHHHHH
Confidence 99999998 544344433
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-05 Score=93.71 Aligned_cols=208 Identities=9% Similarity=-0.063 Sum_probs=147.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSV 467 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~l 467 (773)
.+++++|+..+++..+.. +-+...+..+-.++...|++++|...+++.++.. +.+...+..+..+|...|+.++|+..
T Consensus 317 ~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 345899999999998863 2256677788788889999999999999999975 33567788889999999999999999
Q ss_pred HHHhhc--CC-HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCC
Q 004114 468 FSNMTE--RD-LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGI 543 (773)
Q Consensus 468 f~~M~~--~d-~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi 543 (773)
|++..+ |+ ...+..++..+...|++++|+..++++.+.. .|+ ...+..+-.++...|+.++|...+.++...
T Consensus 395 ~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--- 470 (553)
T PRK12370 395 INECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--- 470 (553)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---
Confidence 999874 43 2334445556777899999999999987653 344 334566677788999999999999887543
Q ss_pred CCC-cchhhhHHHHHHhCCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004114 544 VPS-MKHYVSIVDMLGSTGYLDEALEFIEKM----PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVE 606 (773)
Q Consensus 544 ~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~ 606 (773)
.|+ ....+.|...|+..| ++|...++.+ ...+.-.-+..++. .-+|+-+.+... +.+.
T Consensus 471 ~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVL--VAHGEAIAEKMW-NKFK 533 (553)
T ss_pred cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHH--HHHhhhHHHHHH-HHhh
Confidence 343 334445556667777 4777766665 22343334444444 445665544433 4444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.3e-05 Score=82.08 Aligned_cols=220 Identities=11% Similarity=0.140 Sum_probs=164.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCC--HHHHHHHHHHHHhCCChHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL-SPLR--VSTYNGILKMYSECDSMDDA 464 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G-~~pd--~~tynaLI~ay~k~G~l~eA 464 (773)
+...++|+++|-+|.+.. +-+..+--+|-+.+-+.|..|.|.++|+-+.++- +.-+ ....-.|-.-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467899999999998852 1123344567777889999999999999998862 2111 23445577778999999999
Q ss_pred HHHHHHhhcCCH---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 465 FSVFSNMTERDL---TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQ----IFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 465 ~~lf~~M~~~d~---~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~----Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
+.+|..+.+.+. ..---|+..|-...+|++|+++-+++.+.+-.+..+ -|.-|...+.-..+++.|+.++.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999999886433 456678999999999999999999999876655443 2334444455567889999888876
Q ss_pred HHhcCCCCC-cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 538 SKDYGIVPS-MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 538 ~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
... .|. +..--.|-+.+...|++..|.+.++.. .-.|+ ..+...|..+|...|+.+.+...+..+.+..+.
T Consensus 207 lqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 207 LQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred Hhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 543 343 333345567888999999999999887 33454 357788999999999999998888877766543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00024 Score=77.54 Aligned_cols=219 Identities=12% Similarity=0.046 Sum_probs=148.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCH-------HHHHHHHHH
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRV-------STYNGILKM 454 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~-------~tynaLI~a 454 (773)
..-+...|+...|..-++++.+.+-. ..........+|.+.|++..+..+...|.+.|.--+. .+|..+++=
T Consensus 160 arlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q 238 (400)
T COG3071 160 ARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQ 238 (400)
T ss_pred HHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554322 3344555556666666666666666666665544332 244444444
Q ss_pred HHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 004114 455 YSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM 531 (773)
Q Consensus 455 y~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~ 531 (773)
....+..+.-...++..+. .+...--+++.-+.+.|+.++|.++..+-.+.+..|...+ +-.+.+-++.+.-.
T Consensus 239 ~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~ 314 (400)
T COG3071 239 ARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLI 314 (400)
T ss_pred HhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHH
Confidence 4444444444444444442 2455566778888899999999999999998888777333 33455777777777
Q ss_pred HHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 532 LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 532 ~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
+..+.-.+..+-.| ..+.+|=..|.+.+.|.+|.+.|+.. ...|+..+|..+-.++.+.|+.++|..+.+....
T Consensus 315 k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 315 KAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77777666655555 66778888899999999999999976 7789999999999999999999999888876553
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00022 Score=84.44 Aligned_cols=294 Identities=14% Similarity=0.104 Sum_probs=207.1
Q ss_pred HHHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhh---------hhccHHHHHHHHHHcCCHHHHHHH
Q 004114 327 SRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSS---------QNNGTLEQLDGLVKEGKVKEAIEV 397 (773)
Q Consensus 327 a~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~---------~~~~~~~LI~a~~~~G~~~eAl~l 397 (773)
+++.++.+..+...+++-. +-....|..|-..|-..|+++++.... ++.-|..+-.-..+.|+++.|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3455566666666665543 344567889999999999999998842 333344467777888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHH----HHHHHhCCChHHHHHHHHHhhc
Q 004114 398 LGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGI----LKMYSECDSMDDAFSVFSNMTE 473 (773)
Q Consensus 398 f~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaL----I~ay~k~G~l~eA~~lf~~M~~ 473 (773)
|.+..... +++...+---+..|-+.|+...|+.-|.+|.....+.|..-.-.+ +..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99998863 334444444566688899999999999999987544444434333 4556667777889988887764
Q ss_pred --C---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH--------------------------HHHHHHHH
Q 004114 474 --R---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIF--------------------------IGVFSACS 522 (773)
Q Consensus 474 --~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty--------------------------~~LL~a~~ 522 (773)
. +...+++++..|.+...++.|.....++.....++|..-+ .-++-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2 5567899999999999999999999988872222222111 11222233
Q ss_pred cCCChHHHHHHHHHHHHhcC--CCCCcchhhhHHHHHHhCCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChhH
Q 004114 523 ALGDVVEGMLHFESMSKDYG--IVPSMKHYVSIVDMLGSTGYLDEALEFIEKM---PMEPDVDVWEKLMNLCRMHGNLEL 597 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~~G--i~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M---~~~Pd~~ty~~LI~a~~~~G~~e~ 597 (773)
+....+....+......+ . ..-++..|.-+.++|...|++.+|+++|..+ +..-+...|-.+..+|...|..+.
T Consensus 389 ~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 333333333333333332 3 3335678889999999999999999999998 222357899999999999999999
Q ss_pred HHHHHHHHHHcCCCCc-------hHHHHcCCch
Q 004114 598 GDRCAEIVEQLDPSRL-------NEKSKAGLVP 623 (773)
Q Consensus 598 A~~~~e~m~el~p~~~-------~~y~~aG~~~ 623 (773)
|.+.++++..+.|++. ..+...|..+
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~E 500 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHE 500 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHH
Confidence 9999999999999985 3455556554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.2e-07 Score=66.34 Aligned_cols=34 Identities=29% Similarity=0.502 Sum_probs=26.7
Q ss_pred hCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 439 LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 439 ~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
+|+.||..||++||++||+.|++++|+++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888888774
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.6e-05 Score=85.86 Aligned_cols=223 Identities=13% Similarity=0.108 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHhhhhccHH-----------------HHHHHHHHcCCHHHHHHHHHHHHHC-----C-CC
Q 004114 351 MMASQVLNNCKHEDDFAEASRSSQNNGTL-----------------EQLDGLVKEGKVKEAIEVLGLLEKQ-----C-IS 407 (773)
Q Consensus 351 ~~~n~LI~~y~k~g~~~~A~~v~~~~~~~-----------------~LI~a~~~~G~~~eAl~lf~~M~~~-----G-v~ 407 (773)
.|...|..+|...|++++|..++.+.-.. .+-..|...+++++|+.+|.+++.- | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46667999999999999999975322111 1556788899999999999999742 2 22
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CC-CCCHH-HHHHHHHHHHhCCChHHHHHHHHHhhc------
Q 004114 408 VD-LPTFSQLMQACGDAKALEEAKAVHEHVERL-----LS-PLRVS-TYNGILKMYSECDSMDDAFSVFSNMTE------ 473 (773)
Q Consensus 408 Pd-~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-----G~-~pd~~-tynaLI~ay~k~G~l~eA~~lf~~M~~------ 473 (773)
|. +.++..|-.+|.+.|++++|...++...+. |. .+.+. ..+.+...|+-.+++++|+.++....+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 32 347778888899999999998888776543 22 23333 456677778889999999998875542
Q ss_pred -C-C---HhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHH---
Q 004114 474 -R-D---LTSWDTMITGFAKNGLGEDAVDIFSQFKQA------GLKPD-DQIFIGVFSACSALGDVVEGMLHFESMS--- 538 (773)
Q Consensus 474 -~-d---~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~------Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~--- 538 (773)
+ + ..+++.|-..|...|++++|.++|++.... +..+. ...++.|-.+|.+.+...+|.++|.+..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 1 2 347999999999999999999999998653 12233 3467888889999999999988887532
Q ss_pred HhcCCC-CC-cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 539 KDYGIV-PS-MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 539 ~~~Gi~-Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+.+|.. |+ ..+|..|...|.+.|++++|.++.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 443432 23 478889999999999999999998765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.6e-06 Score=88.00 Aligned_cols=222 Identities=15% Similarity=0.123 Sum_probs=148.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPL-RVSTYNGILKMYSECD 459 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~p-d~~tynaLI~ay~k~G 459 (773)
+.+++...|..+.++ .+..... .|.......+...+....+-+.+..-+.+.+...... +..+......+|...|
T Consensus 41 ~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 41 QYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 677788888877554 3333332 5666555444444443344455544444333333222 2233333345677789
Q ss_pred ChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHH
Q 004114 460 SMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA----LGDVVEGMLHFE 535 (773)
Q Consensus 460 ~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~----~G~~deA~~if~ 535 (773)
++++|++++.+. .+.......|..|.+.++++.|.+.++.|.+. ..| .|..-|..|+.. ...+.+|..+|+
T Consensus 117 ~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~ 191 (290)
T PF04733_consen 117 DYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFE 191 (290)
T ss_dssp HHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 999999998876 56777778889999999999999999999875 334 445555555543 346899999999
Q ss_pred HHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCCC
Q 004114 536 SMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNL-ELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 536 ~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~-e~A~~~~e~m~el~p~~ 612 (773)
++... ..+++.+.+.+..++...|++++|.+++.+. ...| +..+...+|.+....|+. +.+.+.+..+....|++
T Consensus 192 El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 192 ELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 99665 4578888999999999999999999999875 3344 466777788888888877 66788889999888887
Q ss_pred c
Q 004114 613 L 613 (773)
Q Consensus 613 ~ 613 (773)
+
T Consensus 270 ~ 270 (290)
T PF04733_consen 270 P 270 (290)
T ss_dssp H
T ss_pred h
Confidence 5
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0014 Score=75.33 Aligned_cols=252 Identities=15% Similarity=0.141 Sum_probs=183.9
Q ss_pred HcCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHhCCC
Q 004114 387 KEGKVKEAIEVLGL----LEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR--VSTYNGILKMYSECDS 460 (773)
Q Consensus 387 ~~G~~~eAl~lf~~----M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd--~~tynaLI~ay~k~G~ 460 (773)
.+|.++....++++ +...|+..+...|-.=..+|-+.|..-.+..|....+..|++-. -.||..-.+.|.+.+.
T Consensus 452 ~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 452 ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence 34555555555443 23445666666666666666666666666666666665555422 3466666666777777
Q ss_pred hHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 461 l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
++-|+.+|....+ .+...|...+..=-.+|..++...+|.+.... ++-..+.|.......-.+|++..|+.++...
T Consensus 532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~a 610 (913)
T KOG0495|consen 532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQA 610 (913)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 8888888876653 36677888877777789999999999998875 4344566777777888899999999999887
Q ss_pred HHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 538 SKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 538 ~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
... .+-+...|-+-+........+++|..+|.+. ...|+..+|..-+..-...++.++|.++++...+..|+....|
T Consensus 611 f~~--~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~ 688 (913)
T KOG0495|consen 611 FEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLW 688 (913)
T ss_pred HHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHH
Confidence 654 2235788999999999999999999999988 5568889999989988999999999999999999999998888
Q ss_pred HHcCCchhhhhHH-----HHHhcccccccc
Q 004114 617 SKAGLVPVNASEL-----AKEKENKKLASQ 641 (773)
Q Consensus 617 ~~aG~~~~~v~~l-----mk~~~l~k~~~~ 641 (773)
...|.+......+ .-..|+++.|.+
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 8888876443322 222556666655
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00024 Score=78.68 Aligned_cols=226 Identities=12% Similarity=0.087 Sum_probs=110.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhCC
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS--PLRVSTYNGILKMYSECD 459 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~--~pd~~tynaLI~ay~k~G 459 (773)
..++-.....++++.-...+...|+.-....-+....+.-...+++.|..+|+++.+... .-|..+|..++-.--.+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 334444445555555555555555443333323333333455667777777777766521 013444444432221111
Q ss_pred Ch-HHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004114 460 SM-DDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMS 538 (773)
Q Consensus 460 ~l-~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~ 538 (773)
++ --|..++.- .+=-..|..++..-|.-.++.++|...|++.++.+-+ ....|+.+-.-|....+...|..-+....
T Consensus 314 kLs~LA~~v~~i-dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVSNI-DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHHh-ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 11 111111111 1112233444444555555666666666665553321 23345555555666666666665555543
Q ss_pred HhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 539 KDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 539 ~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
+- .+.|-..|-.|-.+|.-.+...-|+-.|.+. .++| |..+|.+|-..|.+.+++++|+++++........
T Consensus 392 di--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 392 DI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred hc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 32 2234555556666666666666666666555 3444 4556666666666666666666666655555433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-06 Score=63.15 Aligned_cols=32 Identities=31% Similarity=0.608 Sum_probs=21.9
Q ss_pred CCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 542 GIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 542 Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666666
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00082 Score=74.63 Aligned_cols=193 Identities=15% Similarity=0.189 Sum_probs=151.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHH
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAK 488 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~ 488 (773)
|++++.+-|+-.++-+.|...|+..++.+.. ...+|+.|-.=|....+...|+.-++...+ +|-..|-.|-.+|.-
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 4444555577788899999999999987533 566888888999999999999999987764 588899999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHH
Q 004114 489 NGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEAL 567 (773)
Q Consensus 489 ~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~ 567 (773)
.+++.=|+-.|++... ++| |...|.+|-.+|.+.+++++|++.|.....- | ......+..|.++|-+.++..+|.
T Consensus 411 m~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~-dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-G-DTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred hcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-c-ccchHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999998877 556 5678999999999999999999999988664 2 224578889999999999999998
Q ss_pred HHHHhC-------CC-CCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 568 EFIEKM-------PM-EPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 568 ~lf~~M-------~~-~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
..|++- +. .|. +..---|..-+.+.+++++|.........-+
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence 887654 32 231 2222235566788899999887666555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00064 Score=74.33 Aligned_cols=238 Identities=15% Similarity=0.098 Sum_probs=191.2
Q ss_pred HHHHHH--HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Q 004114 381 QLDGLV--KEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC 458 (773)
Q Consensus 381 LI~a~~--~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~ 458 (773)
+..|+. -.|++..|.++..+-.+.+-.| ...|.....|.-..|+.+.+-..+.+..+.--.++..++-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 555554 4799999999999987776443 4567777788889999999999999998875567788899999999999
Q ss_pred CChHHHHHHHHHhh---cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHcCCChH
Q 004114 459 DSMDDAFSVFSNMT---ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD-------QIFIGVFSACSALGDVV 528 (773)
Q Consensus 459 G~l~eA~~lf~~M~---~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~-------~Ty~~LL~a~~~~G~~d 528 (773)
|+.+.|..-.++.. .+....-..+..+|.+.|++.+++.+..+|.+.|+--|. .+|..++.-+...+..+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999998887665 458889999999999999999999999999999876554 37899999998888888
Q ss_pred HHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 529 EGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 529 eA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
.-...++....+ .+-++..-.+++.-+.++|+.++|.+++++. +-.-|.. -..+-.+.+-++.+.-++.++.-.+
T Consensus 247 gL~~~W~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 247 GLKTWWKNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHHhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHH
Confidence 878888888665 4556667778999999999999999999876 2222333 1233456677888888888888888
Q ss_pred cCCCCchHHHHcCCch
Q 004114 608 LDPSRLNEKSKAGLVP 623 (773)
Q Consensus 608 l~p~~~~~y~~aG~~~ 623 (773)
..|+++..+...|.+.
T Consensus 323 ~h~~~p~L~~tLG~L~ 338 (400)
T COG3071 323 QHPEDPLLLSTLGRLA 338 (400)
T ss_pred hCCCChhHHHHHHHHH
Confidence 8999887666666654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00094 Score=72.43 Aligned_cols=197 Identities=12% Similarity=-0.066 Sum_probs=136.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
+-..|.+.|+.++|+..|.+..+.. +-+...|..+-..+...|++++|...|+..++... -+..++..+..+|...|+
T Consensus 70 ~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 70 RGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIALYYGGR 147 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 4556778899999999999888763 23577899999999999999999999999998542 246788888899999999
Q ss_pred hHHHHHHHHHhhc--CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE--RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMS 538 (773)
Q Consensus 461 l~eA~~lf~~M~~--~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~ 538 (773)
+++|++.|+...+ |+-.........+...++.++|+..|.+.... ..|+...+ .+ +....|++.++ ..+..+.
T Consensus 148 ~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~ 222 (296)
T PRK11189 148 YELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NI--VEFYLGKISEE-TLMERLK 222 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HH--HHHHccCCCHH-HHHHHHH
Confidence 9999999998774 33221222222344567899999999776543 23332221 22 22345666554 3555555
Q ss_pred HhcCCCC-----CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCC-CCHHHHHH
Q 004114 539 KDYGIVP-----SMKHYVSIVDMLGSTGYLDEALEFIEKM-PME-PDVDVWEK 584 (773)
Q Consensus 539 ~~~Gi~P-----d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~-Pd~~ty~~ 584 (773)
+.....+ ....|..|-..+.+.|++++|...|++. ... ||-+-+..
T Consensus 223 ~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 223 AGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4322222 2357888999999999999999999876 333 45554444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00057 Score=79.40 Aligned_cols=245 Identities=14% Similarity=0.177 Sum_probs=139.5
Q ss_pred HHHHhcCChhHHHHhhhh--------ccHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hc----
Q 004114 358 NNCKHEDDFAEASRSSQN--------NGTL-EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACG-DA---- 423 (773)
Q Consensus 358 ~~y~k~g~~~~A~~v~~~--------~~~~-~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~-~~---- 423 (773)
..+...|+.++|+..+.. ..+. .....|.+.|+.++|..+|..+...+ ||-..|-..+..|. -.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 445566777777774311 1111 14556667777777777777777663 44444433333332 11
Q ss_pred -CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCh-HHHHHHHHHhhcCCH-hHHHHHHHHHHHcCChHHHHHHHH
Q 004114 424 -KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSM-DDAFSVFSNMTERDL-TSWDTMITGFAKNGLGEDAVDIFS 500 (773)
Q Consensus 424 -g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l-~eA~~lf~~M~~~d~-~tyn~LI~ay~~~G~~deAl~Lf~ 500 (773)
...+...++++++...- |.....--|.-.+..-..+ ..+...+..+..+.+ .+|+.|-..|....+.+-...++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 24566666666665542 2222222222122211112 223333444445554 456666666665555556666666
Q ss_pred HHHHC----C----------CCCCHHHH--HHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-cchhhhHHHHHHhCCCH
Q 004114 501 QFKQA----G----------LKPDDQIF--IGVFSACSALGDVVEGMLHFESMSKDYGIVPS-MKHYVSIVDMLGSTGYL 563 (773)
Q Consensus 501 eM~~~----G----------v~Pd~~Ty--~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l 563 (773)
++... + -.|+...| ..|...|-..|++++|+.++++.+. ..|+ ++.|..-...|-+.|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCH
Confidence 65432 1 12333333 3444556678888888888887654 3455 56777777788888888
Q ss_pred HHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 564 DEALEFIEKM-PM-EPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 564 ~eA~~lf~~M-~~-~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
.+|.+.++.. .+ .-|..+-+..+..+.+.|++++|+.++.++-+-+
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 8888887766 11 2366777777888888888888888888776544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00086 Score=80.06 Aligned_cols=273 Identities=12% Similarity=0.042 Sum_probs=183.7
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhcc-------------------HHHHHHHHHHcCCHHHHHHH
Q 004114 337 EGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNG-------------------TLEQLDGLVKEGKVKEAIEV 397 (773)
Q Consensus 337 ~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~-------------------~~~LI~a~~~~G~~~eAl~l 397 (773)
....+...+-.+.+.+.|.+-..+-..|.+++|...|...- .-.+...+-..++++.|.++
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 33344455555677777888888888888888877431100 00133444455677777777
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC--
Q 004114 398 LGLLEKQCISVDLP-TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER-- 474 (773)
Q Consensus 398 f~~M~~~Gv~Pd~~-ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~-- 474 (773)
|....+. .|.-+ .|--++...-..+.+.+|...+....... ..+..+++-+-..|.+...+..|.+-|+.+.+.
T Consensus 519 Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~ 595 (1018)
T KOG2002|consen 519 YKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTS 595 (1018)
T ss_pred HHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhc
Confidence 7777765 23322 23333211122356677777777666542 224444555556777777777777766655432
Q ss_pred ---CHhHHHHHHHHHH------------HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 475 ---DLTSWDTMITGFA------------KNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 475 ---d~~tyn~LI~ay~------------~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
|+.+--+|-..|. ..+..++|+.+|.+.++..- -+...-+.+--.++..|++.+|..+|..+++
T Consensus 596 ~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 596 TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHH
Confidence 3333333333222 23457889999998887532 2455667777788899999999999999988
Q ss_pred hcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchH
Q 004114 540 DYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM----PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 540 ~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
. ..-...+|-.|..+|..+|++..|.++|+.. .-+-+..+...|-.++...|.+.+|.+++.....+.|+++.+
T Consensus 675 a--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 675 A--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSV 752 (1018)
T ss_pred H--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchH
Confidence 6 3345578889999999999999999999865 334578889999999999999999999999999999998743
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0011 Score=67.94 Aligned_cols=190 Identities=11% Similarity=0.023 Sum_probs=97.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHH
Q 004114 419 ACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDA 495 (773)
Q Consensus 419 a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deA 495 (773)
.|...|+...|+.-+++.++.. +-+..+|..+...|-+.|..+.|.+.|++... .+-.+.|..-.-+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3444444444444444444432 11233444444444445555555544443331 1333444444455555555555
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 496 VDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 496 l~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
...|++....-.-|. ..||..+.-+..+.|+.+.|+.+|.+-.+. .| ...+.-.|.....+.|+...|..+++..
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 555555554321111 234544444445566666666666554332 22 2344455666666666767776666665
Q ss_pred --CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 574 --PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 574 --~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
...+...+.-..|..-...|+.+.+.+.-..+.+..|..
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 233566666566666666777776666666666666654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.6e-06 Score=58.54 Aligned_cols=35 Identities=31% Similarity=0.720 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD 511 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~ 511 (773)
++||+||.+|++.|++++|+++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00047 Score=75.80 Aligned_cols=214 Identities=12% Similarity=0.107 Sum_probs=163.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSV 467 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~l 467 (773)
+|++++|.+.|++.+..........|++=|. +-..|++++|++.|-.+-.. +.-++.+.--+...|--..+...|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt-~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLT-AEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhccc-HHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 6899999999999987643333344444333 45779999999998776543 223566666778888888899999999
Q ss_pred HHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCC
Q 004114 468 FSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIV 544 (773)
Q Consensus 468 f~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~ 544 (773)
+.+... .|....+-|...|-+.|+-..|+..+-+--+- +.-+..|.-.|..-|....-+++++.+|++.. =+.
T Consensus 581 ~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---liq 656 (840)
T KOG2003|consen 581 LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQ 656 (840)
T ss_pred HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcC
Confidence 987653 38888999999999999999998876554332 34466777788888888888999999998763 488
Q ss_pred CCcchhhhHHHHH-HhCCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 545 PSMKHYVSIVDML-GSTGYLDEALEFIEKM--PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 545 Pd~~tyn~LI~~y-~r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
|+..-|-.||..| .|.|.+.+|+++++.. .+.-|+....-|++.|...|.. ++.+..+.+++.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~-d~key~~klek~ 722 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-DAKEYADKLEKA 722 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch-hHHHHHHHHHHH
Confidence 9999999988765 5789999999999988 4556888999999998888854 466666555543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0012 Score=72.25 Aligned_cols=264 Identities=12% Similarity=0.019 Sum_probs=183.0
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHH---------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004114 343 YSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTL---------EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTF 413 (773)
Q Consensus 343 ~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~---------~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty 413 (773)
..-++-++.....+-+.+...|+.+.|...|.-..+. .-..-+.+.|+++....+...+.... +-+...|
T Consensus 225 ~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 4456778888889999999999999888865322211 12223457788888877777776542 1223333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh--cC-CHhHHHHHHHHHHHcC
Q 004114 414 SQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT--ER-DLTSWDTMITGFAKNG 490 (773)
Q Consensus 414 ~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~--~~-d~~tyn~LI~ay~~~G 490 (773)
-.-+..+-..++++.|+.+-+..++... -++..+-.=-.++...++.++|.-.|+... .| +..+|.-|+.+|...|
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence 3333334456778888888777766431 122233222355677899999999998654 54 8899999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHc-CCChHHHHHHHHHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHHH
Q 004114 491 LGEDAVDIFSQFKQAGLKPDDQIFIGVF-SACSA-LGDVVEGMLHFESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEAL 567 (773)
Q Consensus 491 ~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL-~a~~~-~G~~deA~~if~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~ 567 (773)
++.||+.+-....+. +.-+..|.+.+- ..|.. ...-++|.+++++- ..+.|+ ....+.+.+.+.+.|+.+++.
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~---L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS---LKINPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh---hccCCccHHHHHHHHHHHHhhCccchHH
Confidence 999998887665442 223444554441 23332 23346778877754 345665 355667888899999999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 568 EFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 568 ~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
.+++.- ...||....+.|-..++....+.+|...+....+++|.+
T Consensus 459 ~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 459 KLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 999876 567899999999999999999999999999999999987
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.004 Score=71.71 Aligned_cols=223 Identities=13% Similarity=0.092 Sum_probs=95.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCh
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSM 461 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l 461 (773)
+.-...+..+++|..+|.+... ..|+..+|.--+..---.+..++|++++++.++. ++.-...|-.+-..+-..+++
T Consensus 625 vKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHH
Confidence 3333444444444444444333 2333333333333333334444444444444432 111122333333334444444
Q ss_pred HHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004114 462 DDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMS 538 (773)
Q Consensus 462 ~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~ 538 (773)
+.|...|..-.+ | .+..|-.|...=-+.|.+-+|..+|++-+..+-+ +...|...|..=.+.|..+.|..+..+..
T Consensus 702 e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 702 EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444433221 2 2234544444444555555555555555544322 34455555555556666666555444433
Q ss_pred HhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 539 KDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 539 ~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
.+ ++.+...|..-|.+..+.++-.++.+.+++ ++-|..+.-++...|....+++.|..-++...+.+|+.
T Consensus 781 Qe--cp~sg~LWaEaI~le~~~~rkTks~DALkk--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 781 QE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKK--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred Hh--CCccchhHHHHHHhccCcccchHHHHHHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 32 222222333333332222222222222222 22344444444455555555555655555555555555
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.013 Score=65.44 Aligned_cols=317 Identities=12% Similarity=0.082 Sum_probs=211.7
Q ss_pred cCCcccccCCCCCcccchhhccCCchhhhcccCCCCccHHHHHHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004114 286 QDTGQHQQALSGHYSGNFGIHQNSPSFYQQDQNGGQYQWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDD 365 (773)
Q Consensus 286 ~~~~~~~q~~~~~y~~~i~~~~qsp~~~~q~~~~~~~~w~~a~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~ 365 (773)
+.++.||.+-.-.|...|+...-...+- ..--+|......++++..+++..+... .-+..+|-.-+++=.|+..
T Consensus 49 ~EL~eYq~RkRkefEd~irrnR~~~~~W-----ikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~ 122 (677)
T KOG1915|consen 49 EELSEYQLRKRKEFEDQIRRNRLNMQVW-----IKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQ 122 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhh
Confidence 4456666666666766665433221111 233467888888888888888776555 5567788888899999999
Q ss_pred hhHHHHhhhhccHH---------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004114 366 FAEASRSSQNNGTL---------EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHV 436 (773)
Q Consensus 366 ~~~A~~v~~~~~~~---------~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m 436 (773)
+..|+.|++..... .-+.+=-..|++..|.++|++-.. ..||.-.|.+.|+-=.+-..++.|+.+++..
T Consensus 123 vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 123 VNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERF 200 (677)
T ss_pred HhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999974321111 123344456899999999988765 4899999999999888888899999999887
Q ss_pred HHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC------------------------------------------
Q 004114 437 ERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER------------------------------------------ 474 (773)
Q Consensus 437 ~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~------------------------------------------ 474 (773)
+-. .|++.+|--...-=-++|.+..|..+|+...+.
T Consensus 201 V~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~r 278 (677)
T KOG1915|consen 201 VLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGR 278 (677)
T ss_pred hee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 653 467766666666666666666666665543210
Q ss_pred ------------------------------------------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-
Q 004114 475 ------------------------------------------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD- 511 (773)
Q Consensus 475 ------------------------------------------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~- 511 (773)
|-.+|--.+..-...|+.+...++|++.... +.|-.
T Consensus 279 aeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~e 357 (677)
T KOG1915|consen 279 AEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASE 357 (677)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhH
Confidence 1123334444444456666666666665542 44421
Q ss_pred ------HHHHHHHHHH---HcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHH----hCCCHHHHHHHHHhC-CCCC
Q 004114 512 ------QIFIGVFSAC---SALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG----STGYLDEALEFIEKM-PMEP 577 (773)
Q Consensus 512 ------~Ty~~LL~a~---~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~----r~G~l~eA~~lf~~M-~~~P 577 (773)
..|.-+=-|| ....+++.+.++|....+- |+-...||.-+=-+|+ ++-++..|.+++... |..|
T Consensus 358 kr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP 435 (677)
T KOG1915|consen 358 KRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP 435 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC
Confidence 1232222222 2345666667777666442 3334566665555554 678899999998765 8889
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchH
Q 004114 578 DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 578 d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
-..++...|..=.+.++++....+++.+.+..|.+-.+
T Consensus 436 K~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 436 KDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 99999999999999999999999999999999998533
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00046 Score=79.41 Aligned_cols=109 Identities=13% Similarity=0.252 Sum_probs=82.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
.|.+-..+..|.+|+.+++.+..... -...|..+..-|+..|+++.|.++|.+. + .++-.|+||.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhcccc
Confidence 46666778888888888888776532 2345778888899999999999998643 2 35667899999999
Q ss_pred hHHHHHHHHHhhcC--CHhHHHHHHHHHHHcCChHHHHHHHH
Q 004114 461 MDDAFSVFSNMTER--DLTSWDTMITGFAKNGLGEDAVDIFS 500 (773)
Q Consensus 461 l~eA~~lf~~M~~~--d~~tyn~LI~ay~~~G~~deAl~Lf~ 500 (773)
+++|.++-++...| .++.|-+-..-+-++|++.+|..||-
T Consensus 807 w~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 807 WEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 99999998887765 45566666666777777777776663
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0078 Score=66.15 Aligned_cols=222 Identities=10% Similarity=-0.043 Sum_probs=134.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHh
Q 004114 383 DGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACG----DAKALEEAKAVHEHVERLLSPLR-VSTYNGILKMYSE 457 (773)
Q Consensus 383 ~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~----~~g~le~A~~l~~~m~k~G~~pd-~~tynaLI~ay~k 457 (773)
..+...|++++|.+++++..+.. +-|...+.. ..++. ..+..+.+.+++.. .....|+ ......+...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence 34567899999999999988762 223334432 11222 23445555555544 1122333 3444556678889
Q ss_pred CCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHcCCChHHHH
Q 004114 458 CDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL-KPDD--QIFIGVFSACSALGDVVEGM 531 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv-~Pd~--~Ty~~LL~a~~~~G~~deA~ 531 (773)
.|++++|+..+++..+ | +...+..+...|...|++++|+.++++.....- .|+. ..|..+...+...|+.++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999998874 2 566788888899999999999999998876432 2333 24556777888999999999
Q ss_pred HHHHHHHHhcCCCCCcchh-h--hHHHHHHhCCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 004114 532 LHFESMSKDYGIVPSMKHY-V--SIVDMLGSTGYLDEALEF---IEK---M-PMEPDVDVWEKLMNLCRMHGNLELGDRC 601 (773)
Q Consensus 532 ~if~~M~~~~Gi~Pd~~ty-n--~LI~~y~r~G~l~eA~~l---f~~---M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~ 601 (773)
.++++........+..... + .++..+...|....+.+. ... . +.............++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999874321111111111 1 233333344432222222 111 1 1111122223566677888888888888
Q ss_pred HHHHHHc
Q 004114 602 AEIVEQL 608 (773)
Q Consensus 602 ~e~m~el 608 (773)
++.+...
T Consensus 287 L~~l~~~ 293 (355)
T cd05804 287 LAALKGR 293 (355)
T ss_pred HHHHHHH
Confidence 8777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0023 Score=65.68 Aligned_cols=192 Identities=10% Similarity=0.019 Sum_probs=157.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004114 377 GTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYS 456 (773)
Q Consensus 377 ~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~ 456 (773)
....|--+|.+.|+...|..-+++.++.. +-+..++..+...|-+.|..+.|.+-|+..++... -+..+.|..---+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 34568889999999999999999999873 22556889999999999999999999999998643 25667888888999
Q ss_pred hCCChHHHHHHHHHhh-cC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 004114 457 ECDSMDDAFSVFSNMT-ER----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM 531 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~-~~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~ 531 (773)
..|++++|...|++.. .| -..||..+.-+..+.|+.+.|.+.|++-++..-. ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 9999999999999766 45 3468999999999999999999999998875322 2346777888888999999999
Q ss_pred HHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 532 LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 532 ~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
.+++..... ..++....-..|..-.+.|+-+.|.+.=..+
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999988765 3378888777888888889888877654444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0018 Score=67.18 Aligned_cols=176 Identities=17% Similarity=0.093 Sum_probs=107.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CCH-HHHHHH
Q 004114 378 TLEQLDGLVKEGKVKEAIEVLGLLEKQCISVD-L---PTFSQLMQACGDAKALEEAKAVHEHVERLLSP-LRV-STYNGI 451 (773)
Q Consensus 378 ~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd-~---~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~-pd~-~tynaL 451 (773)
...+...+.+.|++++|+..|+++... .|+ . .++..+..++...|++++|...++.+++.... +.. .++..+
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 345778888999999999999998775 333 2 35667777888999999999999999886322 111 234444
Q ss_pred HHHHHhC--------CChHHHHHHHHHhhc--CC-HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 452 LKMYSEC--------DSMDDAFSVFSNMTE--RD-LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSA 520 (773)
Q Consensus 452 I~ay~k~--------G~l~eA~~lf~~M~~--~d-~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a 520 (773)
-.++.+. |+.++|.+.|+.+.+ |+ ...+.++..... .... +. .....+...
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~------~~--------~~~~~~a~~ 175 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR------LA--------GKELYVARF 175 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH------HH--------HHHHHHHHH
Confidence 4455543 678888888888764 32 222222211100 0000 00 001133445
Q ss_pred HHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 521 CSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+.+.|+.++|...+....+.+.-.| ....+..+..++.+.|+.++|.++++.+
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6677777777777777665533222 2456667777777777777777777665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0013 Score=80.92 Aligned_cols=197 Identities=11% Similarity=0.154 Sum_probs=157.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHhhcC--CHhHHHHH
Q 004114 409 DLPTFSQLMQACGDAKALEEAKAVHEHVERL-LSPL---RVSTYNGILKMYSECDSMDDAFSVFSNMTER--DLTSWDTM 482 (773)
Q Consensus 409 d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-G~~p---d~~tynaLI~ay~k~G~l~eA~~lf~~M~~~--d~~tyn~L 482 (773)
....|-.-|.-....+++++|+++.++.++. ++.- -.-+|.+++++-..-|.-+...++|++..+- -...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3457777788888999999999999998876 2211 1347888888888888889999999988753 35679999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC---cchhhhHHHHHHh
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS---MKHYVSIVDMLGS 559 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd---~~tyn~LI~~y~r 559 (773)
...|.+.+..++|.++|+.|.+. +.-....|...+..+.+...-+.|..++.+..+. .|. +....-.+.+-.+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhh
Confidence 99999999999999999999875 3345568899999999998888999988876553 343 4445556677789
Q ss_pred CCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 560 TGYLDEALEFIEKM--PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 560 ~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
.|+.+.+..+|+.. ....-...|+.+|+.=.++|+.+.++.+++++..+.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 99999999999987 222356799999999999999999999999988764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0033 Score=73.12 Aligned_cols=225 Identities=16% Similarity=0.160 Sum_probs=138.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC--
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLP-TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC-- 458 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~-ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~-- 458 (773)
+..+...|++++|++.+.+-... .+|.. .+......+.+.|+.++|..++..+++.+. .+..-|..|..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcc
Confidence 45567788888888888664333 44544 445566667788888888888888888763 2444555555555222
Q ss_pred ---CChHHHHHHHHHhhcC--CHhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 004114 459 ---DSMDDAFSVFSNMTER--DLTSWDTMITGFAKNGLG-EDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGML 532 (773)
Q Consensus 459 ---G~l~eA~~lf~~M~~~--d~~tyn~LI~ay~~~G~~-deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~ 532 (773)
...+...++++++.+. -..+.-.+.-.+.....+ ..+...+..+...|+.+ +|+.|-.-|......+-...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 2567777788877642 212222222222221222 23455556667777643 56666555655555554555
Q ss_pred HHHHHHHhc-------------CCCCCc--chhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCh
Q 004114 533 HFESMSKDY-------------GIVPSM--KHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNL 595 (773)
Q Consensus 533 if~~M~~~~-------------Gi~Pd~--~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~ 595 (773)
++..+.... .-.|+. .++.-|...|-+.|++++|++++++. ...|+ +..|..-...+.+.|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 555543321 113444 34455667777888888888888855 55666 56677777788888888
Q ss_pred hHHHHHHHHHHHcCCCC
Q 004114 596 ELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 596 e~A~~~~e~m~el~p~~ 612 (773)
+.|.++++...++++.+
T Consensus 245 ~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 245 KEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHHHhCChhh
Confidence 88888888888888776
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.5e-05 Score=55.59 Aligned_cols=34 Identities=26% Similarity=0.650 Sum_probs=28.9
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004114 476 LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP 509 (773)
Q Consensus 476 ~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P 509 (773)
+.+|+++|.+|++.|+++.|+.+|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888887
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0033 Score=77.54 Aligned_cols=218 Identities=14% Similarity=0.144 Sum_probs=164.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVD-----LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMY 455 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd-----~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay 455 (773)
-|.-..+.++.++|.+++++.+.. +.+. .-.|.++++.-...|.-+...++|+++.+.. --..+|..|...|
T Consensus 1464 YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy 1540 (1710)
T KOG1070|consen 1464 YMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIY 1540 (1710)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHH
Confidence 466667888899999999888754 3221 2357777777777788899999999998863 2245799999999
Q ss_pred HhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHH-HHHHHHHHcCCChHH
Q 004114 456 SECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD--DQIF-IGVFSACSALGDVVE 529 (773)
Q Consensus 456 ~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd--~~Ty-~~LL~a~~~~G~~de 529 (773)
.+....++|-++|+.|.++ ....|...+..+.+..+.++|..++.+.++. -|- .+-+ .-.+..-.+.|+.+.
T Consensus 1541 ~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeR 1618 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAER 1618 (1710)
T ss_pred HHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchh
Confidence 9999999999999999975 6789999999999999999999999988774 344 2222 222333357899999
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHH
Q 004114 530 GMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM---PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEI 604 (773)
Q Consensus 530 A~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M---~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~ 604 (773)
|+.+|+..... .+--...|+..|++=.+.|+.+.++.+|++. .+.|- -..|..-|..=..+|+-+.++.+-.+
T Consensus 1619 GRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1619 GRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred hHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 99999998776 3345778999999999999999999999987 33332 34555556555666765555544433
Q ss_pred H
Q 004114 605 V 605 (773)
Q Consensus 605 m 605 (773)
+
T Consensus 1697 A 1697 (1710)
T KOG1070|consen 1697 A 1697 (1710)
T ss_pred H
Confidence 3
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0016 Score=67.45 Aligned_cols=181 Identities=11% Similarity=0.094 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-C-CHHHHHHHHHHHHhCCChHHHHHHHHHhhc--CC-Hh---HHH
Q 004114 409 DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSP-L-RVSTYNGILKMYSECDSMDDAFSVFSNMTE--RD-LT---SWD 480 (773)
Q Consensus 409 d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~-p-d~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~d-~~---tyn 480 (773)
....+-.+..++...|+++.|...++.+++.... | ...++..+..+|.+.|++++|+..|+++.+ |+ .. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556677777778888888888888888775321 1 123566677888888888888888888764 21 11 344
Q ss_pred HHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhh
Q 004114 481 TMITGFAKN--------GLGEDAVDIFSQFKQAGLKPDDQ-IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYV 551 (773)
Q Consensus 481 ~LI~ay~~~--------G~~deAl~Lf~eM~~~Gv~Pd~~-Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn 551 (773)
.+-.++... |+.++|++.|+++... .|+.. ....+... .. ... .+ .. ...
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~------~~-~~--------~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRN------RL-AG--------KEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHH------HH-HH--------HHH
Confidence 444444443 6677888888887764 34432 12111111 00 000 00 00 112
Q ss_pred hHHHHHHhCCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 004114 552 SIVDMLGSTGYLDEALEFIEKM----PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDP 610 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M----~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p 610 (773)
.+...|.+.|++++|...+++. +-.| ....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4667789999999999999887 2223 357888999999999999999998888876554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00064 Score=73.57 Aligned_cols=210 Identities=12% Similarity=0.043 Sum_probs=132.3
Q ss_pred HHHHHHHHhcCChhHHHHhhhh-----ccHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 004114 354 SQVLNNCKHEDDFAEASRSSQN-----NGTLEQLDGLVKE-GKVKEAIEVLGLLEKQCISV-DLPTFSQLMQACGDAKAL 426 (773)
Q Consensus 354 n~LI~~y~k~g~~~~A~~v~~~-----~~~~~LI~a~~~~-G~~~eAl~lf~~M~~~Gv~P-d~~ty~~LL~a~~~~g~l 426 (773)
--+..+|--.|+.+.+..-+.. .....++..|... .+-+.++.-+.+.......+ +..........+...|++
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~ 118 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDY 118 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH
Confidence 3455666667777665542211 1111245555555 33444554444443333232 333333333445677999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC--CHhH---HHHHHHHHHHcCChHHHHHHHHH
Q 004114 427 EEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER--DLTS---WDTMITGFAKNGLGEDAVDIFSQ 501 (773)
Q Consensus 427 e~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~--d~~t---yn~LI~ay~~~G~~deAl~Lf~e 501 (773)
++|++++... .+.......|.+|.+.++++.|.+.|+.|.+- |.+. ..+.|..+.-...+.+|..+|++
T Consensus 119 ~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~E 192 (290)
T PF04733_consen 119 EEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEE 192 (290)
T ss_dssp HHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 9999887542 35667778899999999999999999999853 4332 23333333334579999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCH-HHHHHHHHhC
Q 004114 502 FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYL-DEALEFIEKM 573 (773)
Q Consensus 502 M~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l-~eA~~lf~~M 573 (773)
|.+. ..++..+.+.+..++...|++++|..++.+... ..| +..+...+|.+....|+. +.+.+++..+
T Consensus 193 l~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~---~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 193 LSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE---KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC---C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 8654 678888999999999999999999998877533 233 456666777777788887 7788888888
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.01 Score=71.34 Aligned_cols=272 Identities=18% Similarity=0.167 Sum_probs=167.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHhh----hhc--------cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--H
Q 004114 348 QNGMMASQVLNNCKHEDDFAEASRSS----QNN--------GTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPT--F 413 (773)
Q Consensus 348 pd~~~~n~LI~~y~k~g~~~~A~~v~----~~~--------~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~t--y 413 (773)
-++.+.+.|.+.|--.|+...++.+. ... ...-+-.+|-..|++++|...|.+-... .+|-++ +
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 45666777888888888888877752 111 0111667788888888888887665543 455433 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC----ChHHHHHHHHHhhcC---CHhHHHHHHHHH
Q 004114 414 SQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD----SMDDAFSVFSNMTER---DLTSWDTMITGF 486 (773)
Q Consensus 414 ~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G----~l~eA~~lf~~M~~~---d~~tyn~LI~ay 486 (773)
--|-..+...|+++.+...|+.+.+.. +-+..+.-.|-..|+..+ ..+.|..++.+..++ |+..|-.+-..|
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 446667778888888888888887752 223445555555555543 456777777766654 455555444444
Q ss_pred HHcCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcC--CCCCcc------hhhhHH
Q 004114 487 AKNGLGEDAVDIFSQF----KQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYG--IVPSMK------HYVSIV 554 (773)
Q Consensus 487 ~~~G~~deAl~Lf~eM----~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~G--i~Pd~~------tyn~LI 554 (773)
- .++...++.+|... ...+-.+-....+.+-......|++++|...|.+...... ..+|.. +--.|.
T Consensus 425 e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 E-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred H-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 4 34444446666543 3444456667788888888888888888888877654311 122221 122234
Q ss_pred HHHHhCCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcCCch
Q 004114 555 DMLGSTGYLDEALEFIEKM-PMEPDV-DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVP 623 (773)
Q Consensus 555 ~~y~r~G~l~eA~~lf~~M-~~~Pd~-~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG~~~ 623 (773)
..+-..++.+.|.+.+..+ ...|.- ..|--|.......+...+|...+..+...+.+++++.+..|.|.
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 4445566778888888777 334543 33333332223346677787778888888888887777777654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.019 Score=68.64 Aligned_cols=264 Identities=15% Similarity=0.139 Sum_probs=143.5
Q ss_pred HHHHcCC-CCCHHHHHHHHHHHHhcCChhHHHHhh---------hhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004114 340 YQSYSGN-IQNGMMASQVLNNCKHEDDFAEASRSS---------QNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVD 409 (773)
Q Consensus 340 ~m~~~gl-~pd~~~~n~LI~~y~k~g~~~~A~~v~---------~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd 409 (773)
+++..-+ +.|...|..+-+.....|.++.|+-.+ .|.-..+=+..|-+.|+..+|++-|.+|...--..|
T Consensus 196 ~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d 275 (895)
T KOG2076|consen 196 WLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVD 275 (895)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchh
Confidence 3343334 446678888888888899998888642 122223356778888999999999999887633223
Q ss_pred HHHHHH----HHHHHHhcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc----CC-----
Q 004114 410 LPTFSQ----LMQACGDAKALEEAKAVHEHVERL-LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE----RD----- 475 (773)
Q Consensus 410 ~~ty~~----LL~a~~~~g~le~A~~l~~~m~k~-G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~----~d----- 475 (773)
..-+.. ++..+...++-+.|.+.+....+. +-..+...++.++.+|.+....+.|......+.. +|
T Consensus 276 ~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 276 IERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhh
Confidence 333333 344455566667888877766663 2234555778888888888888888777665543 11
Q ss_pred -----------------HhHHH----HHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCChHHHHH
Q 004114 476 -----------------LTSWD----TMITGFAKNGLGEDAVDIFSQFKQAGLKP--DDQIFIGVFSACSALGDVVEGML 532 (773)
Q Consensus 476 -----------------~~tyn----~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P--d~~Ty~~LL~a~~~~G~~deA~~ 532 (773)
..+|. -++-++......+.+..+..-..+..+.| +...|.-+..++...|++.+|+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~ 435 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALR 435 (895)
T ss_pred hhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 11111 11222333333333333333333333222 23345555555555555555555
Q ss_pred HHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHH
Q 004114 533 HFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEI 604 (773)
Q Consensus 533 if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~ 604 (773)
+|..+... ...-+...|--+..+|...|..++|.+.++.. ...|+ ...--+|-..+.+.|+.|+|.++++.
T Consensus 436 ~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 436 LLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 55555433 11122445555555555555555555555544 22332 22223344444555555555444444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.015 Score=63.97 Aligned_cols=246 Identities=13% Similarity=0.088 Sum_probs=148.2
Q ss_pred HHHHhcCChhHHHHhhhh----ccH-HHHHH---HHHH----cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 004114 358 NNCKHEDDFAEASRSSQN----NGT-LEQLD---GLVK----EGKVKEAIEVLGLLEKQCISVDL-PTFSQLMQACGDAK 424 (773)
Q Consensus 358 ~~y~k~g~~~~A~~v~~~----~~~-~~LI~---a~~~----~G~~~eAl~lf~~M~~~Gv~Pd~-~ty~~LL~a~~~~g 424 (773)
..+...|++++|..++.. ... ...+. .+.. .+....+.+++.. .....|+. .....+...+...|
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 345667889988885311 100 01111 2333 3444555555443 22233443 34445566778899
Q ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-----CCH--hHHHHHHHHHHHcCChHHHHH
Q 004114 425 ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE-----RDL--TSWDTMITGFAKNGLGEDAVD 497 (773)
Q Consensus 425 ~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~-----~d~--~tyn~LI~ay~~~G~~deAl~ 497 (773)
++++|...++..++.. +.+...+..+...|...|++++|+.++++..+ ++. ..|-.+...+...|+.++|+.
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999975 33566788889999999999999999998764 222 346678889999999999999
Q ss_pred HHHHHHHCCC-CCCHHHH---HHHHHHHHcCCChHHHHHH--HHHHHHhcCCCCCcchh--hhHHHHHHhCCCHHHHHHH
Q 004114 498 IFSQFKQAGL-KPDDQIF---IGVFSACSALGDVVEGMLH--FESMSKDYGIVPSMKHY--VSIVDMLGSTGYLDEALEF 569 (773)
Q Consensus 498 Lf~eM~~~Gv-~Pd~~Ty---~~LL~a~~~~G~~deA~~i--f~~M~~~~Gi~Pd~~ty--n~LI~~y~r~G~l~eA~~l 569 (773)
+|++...... .+..... ..++.-+...|..+.+.++ ....... ........+ ...+.++...|+.++|..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999864332 1222222 1334444455554444443 2111111 111111122 2566777889999999999
Q ss_pred HHhCC--CCC---C----HHHHHHHHH--HHHHcCChhHHHHHHHHHHH
Q 004114 570 IEKMP--MEP---D----VDVWEKLMN--LCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 570 f~~M~--~~P---d----~~ty~~LI~--a~~~~G~~e~A~~~~e~m~e 607 (773)
++.+. .+. . ..+-..++. ++...|+.+.|.+.+.....
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 98871 111 1 112222333 34578888888777766554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.002 Score=73.45 Aligned_cols=239 Identities=13% Similarity=0.169 Sum_probs=171.9
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHH
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAV 496 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl 496 (773)
+.+.|++.+|.-+|+..++.. +-+...|--|-..-+..++-..|+..+.+..+- +....-+|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 357788999999998888875 336778888888888888888999999888753 6777888888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-----------HHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHH
Q 004114 497 DIFSQFKQAGLKPDDQIFIGVF-----------SACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDE 565 (773)
Q Consensus 497 ~Lf~eM~~~Gv~Pd~~Ty~~LL-----------~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~e 565 (773)
..++.-+....+ |..+. +.......+.+..++|-.+....+.++|..++.+|--.|--.|.+++
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999888664311 11111 11122233455567777777766767888899999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch-------HHHHcCCchhhhhHHHHHhccc
Q 004114 566 ALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN-------EKSKAGLVPVNASELAKEKENK 636 (773)
Q Consensus 566 A~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~-------~y~~aG~~~~~v~~lmk~~~l~ 636 (773)
|.+.|+.. .++| |..+|+.|-..++...+.++|..++.+..++.|..+. .|...|...+++..++....+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999977 6677 5789999999999999999999999999999998763 3445555555555444333222
Q ss_pred ccccccEEEEcCEEEEEEeCCCCCccHHHHHHHHHHHHHHHH
Q 004114 637 KLASQNLLEVRSKVHEYRAGDTSHPETDKIYALIRGLRAQMK 678 (773)
Q Consensus 637 k~~~~s~ie~~~~v~~f~~g~~~hp~~~ei~~~l~~L~~~Mk 678 (773)
+.... .....++ .++|+..|+..+..|.
T Consensus 529 ~ks~~-------------~~~~~~~-se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 529 RKSRN-------------HNKAPMA-SENIWQTLRLALSAMN 556 (579)
T ss_pred hcccc-------------cccCCcc-hHHHHHHHHHHHHHcC
Confidence 21000 0111222 5788888876555554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00042 Score=73.83 Aligned_cols=202 Identities=14% Similarity=0.098 Sum_probs=162.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcC
Q 004114 414 SQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNG 490 (773)
Q Consensus 414 ~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G 490 (773)
..+-++|.+.|.+.+|...++..++. .|-+.||-.|-++|.+..+.+.|+.+|.+-.+ | |+.-..-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 56778889999999999999988775 45666788899999999999999999998875 4 4444455777888899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHH
Q 004114 491 LGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFI 570 (773)
Q Consensus 491 ~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf 570 (773)
..++|+++|++..+.. ..++....++...|.-.++.+-|+++|.++..- |+. +.+.|+.+--+|.-.+++|-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999988742 234556777788888999999999999998765 754 5678888888888899999999888
Q ss_pred HhC---CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcC
Q 004114 571 EKM---PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAG 620 (773)
Q Consensus 571 ~~M---~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG 620 (773)
.+. --.|+ ..+|-.|-......|++..|.+.+++...-++++..++...+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLa 436 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLA 436 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHH
Confidence 765 11244 567888887788899999999999999988888765444333
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0038 Score=71.06 Aligned_cols=233 Identities=15% Similarity=0.129 Sum_probs=173.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
...-+...+++.+.+++++...+.. ++....+..=|.++...|+-.+-..+=..|++. .+-...+|-++---|.-.|+
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcC
Confidence 3455667899999999999988752 344445555566777888877766666667765 34456789888888888899
Q ss_pred hHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHHcCCChHHHHHHH
Q 004114 461 MDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA--GL-KPDDQIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 461 l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~--Gv-~Pd~~Ty~~LL~a~~~~G~~deA~~if 534 (773)
.++|++.|.+...- =...|-.+-..|+-.|..|.|+..|...-+. |+ .| ..|. ---|...+.++.|.++|
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP--~LYl--gmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP--SLYL--GMEYMRTNNLKLAEKFF 403 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch--HHHH--HHHHHHhccHHHHHHHH
Confidence 99999999876643 3468999999999999999999998776552 32 23 2233 33567788999999988
Q ss_pred HHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004114 535 ESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM--------PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEI 604 (773)
Q Consensus 535 ~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M--------~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~ 604 (773)
.... ++.| |+.+.+-+--+.-..+.+.+|..+|... +-++ ...+++.|-.+|++.+..++|...++.
T Consensus 404 ~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 404 KQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 7653 5555 5566666665666678888888888765 1122 456788888899999999999999999
Q ss_pred HHHcCCCCchHHHHcCCc
Q 004114 605 VEQLDPSRLNEKSKAGLV 622 (773)
Q Consensus 605 m~el~p~~~~~y~~aG~~ 622 (773)
...+.|.+++.++..|.+
T Consensus 481 aL~l~~k~~~~~asig~i 498 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYI 498 (611)
T ss_pred HHHcCCCchhHHHHHHHH
Confidence 999999998776666654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.028 Score=61.79 Aligned_cols=222 Identities=9% Similarity=0.047 Sum_probs=149.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC-
Q 004114 384 GLVKEGKVKEAIEVLGLLEKQCISVDLP-TFSQLMQACGDAK-ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS- 460 (773)
Q Consensus 384 a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~-ty~~LL~a~~~~g-~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~- 460 (773)
.+...++.++|+.++.++++. .|+-. +|...-.++...+ .+++++..++.+++...+ +..+|+-.--++.+.|+
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCch
Confidence 345567889999999998875 45433 4554444555666 689999999999987543 55567765555556665
Q ss_pred -hHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC---CCh----HH
Q 004114 461 -MDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL---GDV----VE 529 (773)
Q Consensus 461 -l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~---G~~----de 529 (773)
.++++.++++|.+ ++..+|+-..-.+...|++++|++.+++|++.... +...|+.....+.+. |.. ++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 3677888888774 47889999999999999999999999999997655 344555544444443 222 45
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhHHHHHHhC----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC----------
Q 004114 530 GMLHFESMSKDYGIVPSMKHYVSIVDMLGST----GYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHG---------- 593 (773)
Q Consensus 530 A~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~----G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G---------- 593 (773)
+..+...++.. .+-+...|+-+-.+|... +...+|.+++.+. ...| +......|++.|+...
T Consensus 202 el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 202 ELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 56666555443 233567788777777763 3446688887775 3334 5677888888887632
Q ss_pred --------ChhHHHHHHHHHHHcCCC
Q 004114 594 --------NLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 594 --------~~e~A~~~~e~m~el~p~ 611 (773)
..++|.++++.+.+.+|-
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hccccccccHHHHHHHHHHHHhhCcH
Confidence 224566666666555553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.013 Score=70.60 Aligned_cols=213 Identities=11% Similarity=0.056 Sum_probs=152.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKAL 426 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~l 426 (773)
..++.+...+=.+.+.-|..++|-+-+. .....++.+..+.....+++.-+....+. ...+...+-.|..+....|.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~i~~~~g~~ 102 (694)
T PRK15179 25 ASGPTILDLLEAALAEPGESEEAGRELL-QQARQVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVARALEAAHRS 102 (694)
T ss_pred CCCcHHHhHHHHHhcCcccchhHHHHHH-HHHHHHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHHHHHHcCCc
Confidence 4455566666677778888888765211 11123555554444444444333333333 455688888999999999999
Q ss_pred HHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004114 427 EEAKAVHEHVERLLSPLR-VSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQF 502 (773)
Q Consensus 427 e~A~~l~~~m~k~G~~pd-~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM 502 (773)
++|..+++..... .|| ......+...+.+.+++++|+..+++... | +......+-.++.+.|++++|+++|++.
T Consensus 103 ~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 103 DEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred HHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 9999999999885 455 55677788999999999999999999885 3 5566777888999999999999999999
Q ss_pred HHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 503 KQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 503 ~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
... .|+ ..++..+-.++-..|+.++|...|+...+. ..+...-|+-++ +++..-..+++.+
T Consensus 181 ~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~ 242 (694)
T PRK15179 181 SRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTRRL------VDLNADLAALRRL 242 (694)
T ss_pred Hhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHHHH------HHHHHHHHHHHHc
Confidence 983 344 678889999999999999999999988765 335455555443 2333444555555
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=6.3e-05 Score=52.20 Aligned_cols=31 Identities=26% Similarity=0.762 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGL 507 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv 507 (773)
+|||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0034 Score=73.27 Aligned_cols=216 Identities=11% Similarity=0.030 Sum_probs=144.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004114 345 GNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGT-LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDA 423 (773)
Q Consensus 345 gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~-~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~ 423 (773)
.+.|--..--.+...+.++|-+.+|..++..-.+ ..+|.+|+..|+-.+|..+..+..+. +||..-|..+.+.....
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 3344444555677778888888888876543332 24788888888888888887777663 67888888888777777
Q ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHH
Q 004114 424 KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFS 500 (773)
Q Consensus 424 g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~ 500 (773)
.-++.|.++.+..-.+ .--.+-......+++++|.+.|+.-.+ | -..+|-.+-.+..+.+++..|.+.|.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 7778888877654332 111111111225777777777775432 2 45677777777777888888888887
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 501 QFKQAGLKPDDQ-IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 501 eM~~~Gv~Pd~~-Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
.-.. +.||.. .|+.|-.+|.+.++-.+|...+.+..+- . .-...+|...+-...+.|.+++|.+.+..|
T Consensus 544 rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 544 RCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 7665 456643 6788888888888888888777776553 3 334455666666677788888888777766
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0028 Score=71.17 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
...+|+..+...++++.|+.+|+++.+.+...+-.|+..+...++-.+|++++++..+.. +-|...+..-...|...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 344556666677889999999999987766667778888888888889999998888642 2245556666667888999
Q ss_pred hHHHHHHHHHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHHHHHHHhCCCCCC
Q 004114 527 VVEGMLHFESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEALEFIEKMPMEPD 578 (773)
Q Consensus 527 ~deA~~if~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd 578 (773)
.+.|..+.+++.+ +.|+ ..+|..|..+|.+.|++++|+..++.||+-|.
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 9999999988865 4554 56899999999999999999999999976543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.069 Score=59.09 Aligned_cols=222 Identities=14% Similarity=0.084 Sum_probs=114.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLP----TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYS 456 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~----ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~ 456 (773)
+.+.+...|+.++|+..|++.+.. .|+.. .|..| ++..|+++....+...+.... +-+...|-.-.....
T Consensus 238 lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 238 LGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLY 311 (564)
T ss_pred HhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhh
Confidence 455566666666666666665443 22221 12222 234455555555554444321 111122222222223
Q ss_pred hCCChHHHHHHHHHhhcCCH---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHH
Q 004114 457 ECDSMDDAFSVFSNMTERDL---TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGML 532 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~~d~---~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~ 532 (773)
...+.+.|+.+-++..+-+. ..|-.--..+...|++++|.-.|++... +.| +...|-.|+.+|...|.+.+|..
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 34455666666555543322 2222222455666777777777766654 333 34567777777777777777765
Q ss_pred HHHHHHHhcCCCCCcchhhhH-HHHHHh-CCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 533 HFESMSKDYGIVPSMKHYVSI-VDMLGS-TGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 533 if~~M~~~~Gi~Pd~~tyn~L-I~~y~r-~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
+-....+. +.-+..+.+.+ ...+.- ..--++|..++++- .++|+ ......+...|...|..+.+..+++.....
T Consensus 390 ~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 390 LANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 55544333 22223332222 111211 11235677777654 55666 345556666777777777777777777766
Q ss_pred CCCC
Q 004114 609 DPSR 612 (773)
Q Consensus 609 ~p~~ 612 (773)
.|+.
T Consensus 468 ~~D~ 471 (564)
T KOG1174|consen 468 FPDV 471 (564)
T ss_pred cccc
Confidence 6655
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0027 Score=73.34 Aligned_cols=130 Identities=18% Similarity=0.267 Sum_probs=82.5
Q ss_pred HHHHhCCChHHHHHHHHHhhcCCHhH--HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHH
Q 004114 453 KMYSECDSMDDAFSVFSNMTERDLTS--WDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEG 530 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~~M~~~d~~t--yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA 530 (773)
.+-.....+.+|+.+++.+....+.+ |-.+..-|+..|+++.|.+||.+- ..|+-.|..|.+.|+|+.|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 33445667777888888777654433 666677888888888888888542 2355667778888888888
Q ss_pred HHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 004114 531 MLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDR 600 (773)
Q Consensus 531 ~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~ 600 (773)
.++-.+. .|-..+...|-+-..-+-+.|++.+|++++-.++ +|+.. |..|-++|..+...+
T Consensus 811 ~kla~e~---~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~a-----iqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 811 FKLAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDKA-----IQMYDKHGLDDDMIR 871 (1636)
T ss_pred HHHHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchHH-----HHHHHhhCcchHHHH
Confidence 7765543 2444455566666666667777777777766655 45432 344444444443333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0022 Score=74.80 Aligned_cols=212 Identities=12% Similarity=0.090 Sum_probs=169.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
.+...+...|-...|+.+|+++. .|.-+|..|+..|+..+|..+..+.++ -+||...|..|.+....-.
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 47888999999999999998874 466778889999999999999888777 4789999999999988888
Q ss_pred ChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 460 SMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 460 ~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
-++.|.++++....+--..|+-++ .+.+++++|.+.|+.-.+... --..||-.+-.+..+.+++..|.+.|.....
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~~---~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALLI---LSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhcccc---ccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 899999999877655333333332 237899999999987655321 1235777777778889999999999987643
Q ss_pred hcCCCCC-cchhhhHHHHHHhCCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 540 DYGIVPS-MKHYVSIVDMLGSTGYLDEALEFIEKM-PM-EPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 540 ~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~-~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
+.|| ...||.|-.+|.+.++-.+|...+.+. .+ .-+..+|...+....+-|.++.|.+++..+..+.
T Consensus 548 ---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 548 ---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred ---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 5665 689999999999999999999999887 22 2345678788888899999999999999988763
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.012 Score=61.66 Aligned_cols=176 Identities=15% Similarity=0.096 Sum_probs=120.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004114 431 AVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD 510 (773)
Q Consensus 431 ~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd 510 (773)
++.+.+.......+......-...|++.|+.++|++...... +....-.=+..+.+..+.+-|...+++|.+- -+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 344555554444444444444556888899999999888743 3333333344566777889999999999874 25
Q ss_pred HHHHHHHHHHHHc----CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC--CCCCCHHHHHH
Q 004114 511 DQIFIGVFSACSA----LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM--PMEPDVDVWEK 584 (773)
Q Consensus 511 ~~Ty~~LL~a~~~----~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M--~~~Pd~~ty~~ 584 (773)
..|.+-|..++.+ .+.+.+|.-+|++|..+ ..|+..+-+.+..++...|++++|..++++. .-..+..+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 5677766666654 45688899999999664 6788888889999999999999999999887 22335566666
Q ss_pred HHHHHHHcCCh-hHHHHHHHHHHHcCCCCc
Q 004114 585 LMNLCRMHGNL-ELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 585 LI~a~~~~G~~-e~A~~~~e~m~el~p~~~ 613 (773)
+|-.-...|.- +...+.+..+....|..+
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 66555555543 444666777777777663
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.046 Score=62.55 Aligned_cols=261 Identities=10% Similarity=0.041 Sum_probs=181.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHhh---------hhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004114 348 QNGMMASQVLNNCKHEDDFAEASRSS---------QNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQ 418 (773)
Q Consensus 348 pd~~~~n~LI~~y~k~g~~~~A~~v~---------~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~ 418 (773)
-++.+.....+-|-...++.+-.+++ ....+.-=|.++...|+..+-+.+=.+|.+. .+-.+.+|-++--
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 34444445555555666666666641 1112223577899999988888888888776 3345678888877
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHH
Q 004114 419 ACGDAKALEEAKAVHEHVERLLSPLR-VSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGED 494 (773)
Q Consensus 419 a~~~~g~le~A~~l~~~m~k~G~~pd-~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~de 494 (773)
-|-..|..++|++.|...... .|. ...|-.+-..|+-.|.-|.|+..+....+- ...-+--+---|.+.+..+.
T Consensus 321 YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 777889999999999876553 332 457888888999999999988877654421 11112223445777888999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhc-CCCC----CcchhhhHHHHHHhCCCHHHHHH
Q 004114 495 AVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDY-GIVP----SMKHYVSIVDMLGSTGYLDEALE 568 (773)
Q Consensus 495 Al~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~-Gi~P----d~~tyn~LI~~y~r~G~l~eA~~ 568 (773)
|.++|.+... +-|+ ...++-+-...-..+.+.+|..+|......- .+.+ ...+++.|-.+|.+.++.++|..
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999977654 4554 4444544444446788899998888765210 0111 23456777788899999999999
Q ss_pred HHHhC-C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 569 FIEKM-P-MEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 569 lf~~M-~-~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
.++.. . ...+..++.++--.+...|+++.|...+.+..-+.|++.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 99876 2 234788888888889999999999999999999999884
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.022 Score=68.71 Aligned_cols=142 Identities=11% Similarity=0.113 Sum_probs=94.5
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHH
Q 004114 441 SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQI-FIG 516 (773)
Q Consensus 441 ~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~T-y~~ 516 (773)
...++..+-.|.+.....|..++|+.+++...+ | .+..+-.++..+.+.+++++|+..+++.... .|+..+ ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 344566677777777778888888888877763 4 4556777777788888888888888777763 455544 345
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 004114 517 VFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM--PMEPDVDVWEKLM 586 (773)
Q Consensus 517 LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI 586 (773)
+-.++.+.|+.++|..+|++.... .+-+..++..+-.++-+.|+.++|...|+.. ...|...-|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 555666778888888888777652 2223566777777777788888888777766 2223444444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0098 Score=60.73 Aligned_cols=115 Identities=9% Similarity=0.097 Sum_probs=57.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHH-HHcCC--hHHHH
Q 004114 423 AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGF-AKNGL--GEDAV 496 (773)
Q Consensus 423 ~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay-~~~G~--~deAl 496 (773)
..+.+++...++..++.. +.+...|..|...|...|+.++|...|++..+ | +...|..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 334444444444444432 23455555555555555555555555555442 2 444555554442 34444 35555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 497 DIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 497 ~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
+++++..+..-. +..++..+-.++...|++++|+..|+++.+
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555553211 233444455555555666666665555544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.015 Score=65.30 Aligned_cols=196 Identities=16% Similarity=0.149 Sum_probs=137.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHH
Q 004114 422 DAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDI 498 (773)
Q Consensus 422 ~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~L 498 (773)
-.|+.-.|..-|+..++....+. ..|--+-.+|....+-++-...|.+..+ | +..+|-.=-..+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 45777788888888877643322 2366677788888888888888887763 2 445555555555566778888888
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCC
Q 004114 499 FSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PME 576 (773)
Q Consensus 499 f~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~ 576 (773)
|++-+. +.|. ...|.-+-.+.-+.+.+++++..|++.+++ ++-.+++|+.....+...+++++|.+.|+.. .++
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 888776 3443 456677777777888888889989888776 6666788888888888889999998888765 344
Q ss_pred CC---------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcCCch
Q 004114 577 PD---------VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVP 623 (773)
Q Consensus 577 Pd---------~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG~~~ 623 (773)
|+ ..+-.++|-.=.+ +++..|+.++....+++|....+|...|.+.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~ 547 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFE 547 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 43 2233333333233 7888888888888888888866666555543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.01 Score=69.75 Aligned_cols=198 Identities=13% Similarity=0.121 Sum_probs=102.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHhhhhccH-----------------HH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004114 348 QNGMMASQVLNNCKHEDDFAEASRSSQNNGT-----------------LE-QLDGLVKEGKVKEAIEVLGLLEKQCISVD 409 (773)
Q Consensus 348 pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~-----------------~~-LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd 409 (773)
.+..+|..|..+|.+..++|.|.--+--+.- .+ +..--...|.+++|+.+|++-++.
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 3455677777777777776666542100000 00 111123456666666666665542
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc----------------
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---------------- 473 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---------------- 473 (773)
..|=+.|-..|.+++|.++-+.--+..+. .||-....-+-..++++.|++.|++...
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 23333445556666666655432221222 2333333344445566666666654321
Q ss_pred -------CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC
Q 004114 474 -------RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS 546 (773)
Q Consensus 474 -------~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd 546 (773)
+|...|.=.-.-+-..|+.|.|+.+|...+ -|-++++..|-.|++++|.++-++- -|
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~es-------gd 966 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAARIAEES-------GD 966 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeeccCchHHHHHHHhc-------cc
Confidence 122222222223334566666666665443 2555566666677777776655432 24
Q ss_pred cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 547 MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 547 ~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
...+-.|..+|-..|++.+|..+|.+.
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455666777777788888888877664
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00031 Score=49.72 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLR 444 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd 444 (773)
+|+++|.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666666554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.11 Score=58.66 Aligned_cols=235 Identities=12% Similarity=0.084 Sum_probs=146.0
Q ss_pred HHHHHHcCC-HHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHH
Q 004114 382 LDGLVKEGK-VKEAIEVLGLLE---KQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL--LSPLRVSTYNGILKMY 455 (773)
Q Consensus 382 I~a~~~~G~-~~eAl~lf~~M~---~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~--G~~pd~~tynaLI~ay 455 (773)
|..+.+.|. .....++|+++. ..+-.|+..-.+-= .-..++..++..-+.|... .-.|+...+...+.+.
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THP----lp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~ 284 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHP----LPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAK 284 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCC----CchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH
Confidence 556666663 444556666666 33434443211100 0011334444444444332 1234555555555554
Q ss_pred HhCCChHHHHHHHHHhhc-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcCCChHHHHHH
Q 004114 456 SECDSMDDAFSVFSNMTE-RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIF-IGVFSACSALGDVVEGMLH 533 (773)
Q Consensus 456 ~k~G~l~eA~~lf~~M~~-~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty-~~LL~a~~~~G~~deA~~i 533 (773)
.....-..+-.++.+-.+ .....+--..-.+...|..++|+.+++.+... .||-.-| ......+.+.++.++|.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~ 362 (484)
T COG4783 285 YEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIER 362 (484)
T ss_pred hccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 444333333333333333 23334444445566789999999999998774 5666655 4455677889999999999
Q ss_pred HHHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 004114 534 FESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEALEFIEKM--PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDP 610 (773)
Q Consensus 534 f~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p 610 (773)
++.+.. ..|+ ....-.+-.+|.+.|+..+|..+++.. ...-|...|..|-.+|...|+..+|..+..+.
T Consensus 363 ~~kal~---l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~----- 434 (484)
T COG4783 363 LKKALA---LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG----- 434 (484)
T ss_pred HHHHHh---cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH-----
Confidence 998865 4565 455667788999999999999999887 33446889999999999999988777665543
Q ss_pred CCchHHHHcCCchhhhhHHHHHhcc
Q 004114 611 SRLNEKSKAGLVPVNASELAKEKEN 635 (773)
Q Consensus 611 ~~~~~y~~aG~~~~~v~~lmk~~~l 635 (773)
|...|.|...+..++..+..
T Consensus 435 -----~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 435 -----YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----HHhCCCHHHHHHHHHHHHHh
Confidence 45678887666666655444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0079 Score=67.48 Aligned_cols=152 Identities=11% Similarity=0.098 Sum_probs=106.2
Q ss_pred HhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 004114 456 SECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGML 532 (773)
Q Consensus 456 ~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~ 532 (773)
.-+|+.-+|..-|+...+ | +...|=-+-..|+...+.++.+..|.+.....-. +..+|-.--....-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 346888888888887764 2 2233666777888888888888888887765432 22334433344445577888888
Q ss_pred HHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 533 HFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM--PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 533 if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
-|++.+. +.| ++..|--+.-++-|.+++++++..|++. .+..-...|+.....+...++++.|.+-+++..+++
T Consensus 416 DF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 416 DFQKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 8876643 444 3455556666666888899999888877 332345677777888888888999999999888888
Q ss_pred CC
Q 004114 610 PS 611 (773)
Q Consensus 610 p~ 611 (773)
|.
T Consensus 493 ~~ 494 (606)
T KOG0547|consen 493 PR 494 (606)
T ss_pred cc
Confidence 88
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00046 Score=48.93 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 004114 411 PTFSQLMQACGDAKALEEAKAVHEHVERLLSPL 443 (773)
Q Consensus 411 ~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~p 443 (773)
.||+++|.+|++.|+++.|.+++++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777765
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.027 Score=57.53 Aligned_cols=144 Identities=6% Similarity=0.054 Sum_probs=88.3
Q ss_pred HHHHHhcCChhHHHHhhhhccH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004114 357 LNNCKHEDDFAEASRSSQNNGT-LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEH 435 (773)
Q Consensus 357 I~~y~k~g~~~~A~~v~~~~~~-~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~ 435 (773)
+-.|.+.|+++.+.. |... ..-...|...++.++++..+.+.++.. ..|...|..|-..+...|++++|...++.
T Consensus 23 ~~~Y~~~g~~~~v~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~ 98 (198)
T PRK10370 23 VGSYLLSPKWQAVRA---EYQRLADPLHQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQ 98 (198)
T ss_pred HHHHHHcchHHHHHH---HHHHHhCccccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455666777666433 2110 000112223555666666666665542 33666777777777777777777777777
Q ss_pred HHHhCCCCCHHHHHHHHHH-HHhCCC--hHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 436 VERLLSPLRVSTYNGILKM-YSECDS--MDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 436 m~k~G~~pd~~tynaLI~a-y~k~G~--l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
..+... -+..++..+..+ |...|+ .++|.+++++..+. +..++..+...+.+.|++++|+..|+++.+.
T Consensus 99 Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 99 ALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777542 255566666665 355565 47777777776632 5667777777777777777777777777664
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0033 Score=60.76 Aligned_cols=102 Identities=10% Similarity=0.012 Sum_probs=54.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 004114 516 GVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHG 593 (773)
Q Consensus 516 ~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G 593 (773)
.+-.++...|++++|...|...... -+.+...|..+-.++.+.|++++|...|+.. ...| +...|..+-.++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3344455555666665555554332 1123455555555556666666666666555 2223 3455555555666666
Q ss_pred ChhHHHHHHHHHHHcCCCCchHHHHc
Q 004114 594 NLELGDRCAEIVEQLDPSRLNEKSKA 619 (773)
Q Consensus 594 ~~e~A~~~~e~m~el~p~~~~~y~~a 619 (773)
+.++|...++...++.|+++..+...
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 66666666666666666665444333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.094 Score=65.41 Aligned_cols=250 Identities=14% Similarity=0.029 Sum_probs=147.4
Q ss_pred HHHHhcCChhHHHHhhhh-------c-------cHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHH
Q 004114 358 NNCKHEDDFAEASRSSQN-------N-------GTLEQLDGLVKEGKVKEAIEVLGLLEKQCI---SV--DLPTFSQLMQ 418 (773)
Q Consensus 358 ~~y~k~g~~~~A~~v~~~-------~-------~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv---~P--d~~ty~~LL~ 418 (773)
..+...|++++|...... . ....+...+...|++++|...+.+.....- .+ -..++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 445567888887764211 0 001134455678888888888888764311 11 1234445555
Q ss_pred HHHhcCCHHHHHHHHHHHHHh----CCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHhhc------C--CHhHHHHHH
Q 004114 419 ACGDAKALEEAKAVHEHVERL----LSP--L-RVSTYNGILKMYSECDSMDDAFSVFSNMTE------R--DLTSWDTMI 483 (773)
Q Consensus 419 a~~~~g~le~A~~l~~~m~k~----G~~--p-d~~tynaLI~ay~k~G~l~eA~~lf~~M~~------~--d~~tyn~LI 483 (773)
++...|+++.|...+++.... +.. + ...++..+...+...|++++|...+++... + ...++..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 677788888888888776553 221 1 223344555666777888888888876542 1 123344455
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcc----hhhhH
Q 004114 484 TGFAKNGLGEDAVDIFSQFKQAGLK-PDDQIF-----IGVFSACSALGDVVEGMLHFESMSKDYGIVPSMK----HYVSI 553 (773)
Q Consensus 484 ~ay~~~G~~deAl~Lf~eM~~~Gv~-Pd~~Ty-----~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~----tyn~L 553 (773)
..+...|+.++|...+.+.....-. .....+ ...+..+...|+.+.|..++...... . ..... .+..+
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~ 697 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-E-FANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-C-CccchhHHHHHHHH
Confidence 6777788888888888877542110 011111 11223344578888888776654321 1 01111 12355
Q ss_pred HHHHHhCCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 554 VDMLGSTGYLDEALEFIEKM-------PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 554 I~~y~r~G~l~eA~~lf~~M-------~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
..++...|+.++|..++++. +..++ +.+...+-.++...|+.+.|...+....++.
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 66778888888888888765 22222 2355556667788899888888888777664
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.063 Score=58.23 Aligned_cols=94 Identities=19% Similarity=0.153 Sum_probs=56.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhh-HHHHHHhCCCHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCC
Q 004114 517 VFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVS-IVDMLGSTGYLDEALEFIEKMPMEPDVDV-WEKLMNLCRMHGN 594 (773)
Q Consensus 517 LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~-LI~~y~r~G~l~eA~~lf~~M~~~Pd~~t-y~~LI~a~~~~G~ 594 (773)
+..|.+..|...+|+++|-.+... .+ -+..+|.+ |..+|.++++.+.|++++-+|.-..+..+ ...+..-|-+.+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~e 476 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANE 476 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 344555667777777777555221 12 23445544 44567777777777777777742223333 3334446777777
Q ss_pred hhHHHHHHHHHHHcCCCC
Q 004114 595 LELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 595 ~e~A~~~~e~m~el~p~~ 612 (773)
+--|.+++++++.++|..
T Consensus 477 FyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 477 FYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHhhhHHHccCCCc
Confidence 777777777777777654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.01 Score=57.33 Aligned_cols=108 Identities=14% Similarity=-0.017 Sum_probs=57.7
Q ss_pred HHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC
Q 004114 467 VFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP 545 (773)
Q Consensus 467 lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P 545 (773)
+|++..+-+...+..+...+...|++++|+..|+..... .| +..++..+-.+|...|++++|...|....+- -+.
T Consensus 15 ~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~ 90 (144)
T PRK15359 15 ILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DAS 90 (144)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCC
Confidence 333333333333444555555666666666666665543 23 3445555555666666666666666655432 222
Q ss_pred CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC
Q 004114 546 SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD 578 (773)
Q Consensus 546 d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd 578 (773)
+...+..+-.++.+.|+.++|.+.|+.. .+.|+
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4555555666666666666666666554 33444
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0035 Score=57.60 Aligned_cols=77 Identities=10% Similarity=0.116 Sum_probs=68.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCI-SVDLPTFSQLMQACGDAK--------ALEEAKAVHEHVERLLSPLRVSTYNGI 451 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv-~Pd~~ty~~LL~a~~~~g--------~le~A~~l~~~m~k~G~~pd~~tynaL 451 (773)
.|..+...+++.....+|..+++.|+ .|+..+|+.+|.+.+++. ++-..+.+++.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 56677777999999999999999999 999999999999998764 355788899999999999999999999
Q ss_pred HHHHHh
Q 004114 452 LKMYSE 457 (773)
Q Consensus 452 I~ay~k 457 (773)
|..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 998876
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.15 Score=55.25 Aligned_cols=224 Identities=14% Similarity=0.127 Sum_probs=160.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCC------------CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHH
Q 004114 384 GLVKEGKVKEAIEVLGLLEKQCIS------------VDL--PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYN 449 (773)
Q Consensus 384 a~~~~G~~~eAl~lf~~M~~~Gv~------------Pd~--~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tyn 449 (773)
.+.+.|.+++|..=|+..+..... +-. ......+..+.-.|+...|......+++.- +.|+..|.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 456788888888888887765210 001 112234445566788888999888888863 45888888
Q ss_pred HHHHHHHhCCChHHHHHHHHHhh---cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-------HH-
Q 004114 450 GILKMYSECDSMDDAFSVFSNMT---ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIG-------VF- 518 (773)
Q Consensus 450 aLI~ay~k~G~l~eA~~lf~~M~---~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~-------LL- 518 (773)
.-.++|.+.|++..|+.=+.... ..++.++--+-..+-..|+.+.++...++-++ +.||....-. +.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHH
Confidence 88999999999999987665544 34667777778888889999999999988876 5677642211 11
Q ss_pred -----HHHHcCCChHHHHHHHHHHHHhcCCCCC-----cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 004114 519 -----SACSALGDVVEGMLHFESMSKDYGIVPS-----MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLM 586 (773)
Q Consensus 519 -----~a~~~~G~~deA~~if~~M~~~~Gi~Pd-----~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI 586 (773)
......+++-++....+.+.+. .|. ...+..|-.++...|.+.+|.+...+. .+.|| +.++.--.
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 1223456666666666655443 333 344556677788889999999887766 66676 88888888
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 587 NLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 587 ~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
.||....+++.|..-++...++++++.
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 999999999999999999999998873
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.026 Score=66.60 Aligned_cols=237 Identities=15% Similarity=0.118 Sum_probs=158.0
Q ss_pred CCCHHHHHHHHH--HHHhcCChhHHHHhhhh----ccHHHHHHHHHHcCCHHHHHHHHHHHHHC-C--------CCCCHH
Q 004114 347 IQNGMMASQVLN--NCKHEDDFAEASRSSQN----NGTLEQLDGLVKEGKVKEAIEVLGLLEKQ-C--------ISVDLP 411 (773)
Q Consensus 347 ~pd~~~~n~LI~--~y~k~g~~~~A~~v~~~----~~~~~LI~a~~~~G~~~eAl~lf~~M~~~-G--------v~Pd~~ 411 (773)
..|..|-.++++ .|...|++|+|.+.+.+ ..+..|.++|++..+++-|.-.+..|... | -.|+ .
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 457778888875 57788999999884322 12223888899988888888777777432 1 1222 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-CHhHHHHHHHHHHHcC
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER-DLTSWDTMITGFAKNG 490 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~-d~~tyn~LI~ay~~~G 490 (773)
+=..+.-.....|.+++|+.+|.+-++. ..|=..|-..|.+++|.++-+.=..- --.||-....-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 2122222245789999999999987763 34556777899999999887642211 1235655566666677
Q ss_pred ChHHHHHHHHH----------HHHCC---------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhh
Q 004114 491 LGEDAVDIFSQ----------FKQAG---------LKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYV 551 (773)
Q Consensus 491 ~~deAl~Lf~e----------M~~~G---------v~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn 551 (773)
+.+.|++.|++ |+... -+-|...|..--.-+-..|.+|.|+.+|... ++ |-
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-~D---------~f 942 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-KD---------YF 942 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-hh---------hh
Confidence 78888777765 22221 1123333333333444678889888888765 22 56
Q ss_pred hHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004114 552 SIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVE 606 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~ 606 (773)
+|+...|-.|+.++|-++-++-+ |....-.|.+.|-..|++.+|..++.+..
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 78899999999999999999876 55666677778888888777777665543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.02 Score=53.70 Aligned_cols=100 Identities=10% Similarity=0.084 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHc
Q 004114 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKN 489 (773)
Q Consensus 413 y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~ 489 (773)
...+...+...|+.++|.+.++.+...+ +.+...+..+...|.+.|+.++|..+|+...+ .+..+|..+-..|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 4444455556666666666666665543 23455566666666666666666666665542 2445555555666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHH
Q 004114 490 GLGEDAVDIFSQFKQAGLKPDDQIFI 515 (773)
Q Consensus 490 G~~deAl~Lf~eM~~~Gv~Pd~~Ty~ 515 (773)
|++++|+..|++..+. .|+...+.
T Consensus 99 g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 99 GEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred CCHHHHHHHHHHHHHh--ccccchHH
Confidence 6666666666665553 34444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.077 Score=59.93 Aligned_cols=180 Identities=13% Similarity=0.046 Sum_probs=124.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHH
Q 004114 407 SVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMI 483 (773)
Q Consensus 407 ~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI 483 (773)
.||...+...+.+.........+..++.+..+.+ -...-|..-+ .+...|+.++|+..++.+.. | |+.-+....
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~ 347 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAG 347 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3455556666665554444444444443333311 1222333333 34457889999999998763 4 677777888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCC
Q 004114 484 TGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGY 562 (773)
Q Consensus 484 ~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~ 562 (773)
..+.+.++.++|.+.++++.. ..|+ ......+-.++.+.|+..+|+.+++..... .+-|...|..|..+|...|+
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 348 DILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--DPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHhCc
Confidence 899999999999999999887 4677 344566677888999999999988887664 56678899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 563 LDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 563 l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
..+|..-.. .++...|+++.|...+....+.
T Consensus 424 ~~~a~~A~A---------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 424 RAEALLARA---------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred hHHHHHHHH---------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 888876543 4456678888887777666554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.057 Score=66.28 Aligned_cols=56 Identities=9% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
.+-.|..+|-+.|+.++|..+++++.+ .|..+-|-+...|+.. +.++|+.++.+..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 444455555555555555555555543 1444555555555555 5555555555443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.15 Score=63.63 Aligned_cols=225 Identities=12% Similarity=0.034 Sum_probs=145.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCC-CCHHHHHHHHHH
Q 004114 384 GLVKEGKVKEAIEVLGLLEKQCISVDL----PTFSQLMQACGDAKALEEAKAVHEHVERL----LSP-LRVSTYNGILKM 454 (773)
Q Consensus 384 a~~~~G~~~eAl~lf~~M~~~Gv~Pd~----~ty~~LL~a~~~~g~le~A~~l~~~m~k~----G~~-pd~~tynaLI~a 454 (773)
.+...|++++|...+++..+.--..+. .....+..++...|++++|...+.+.... |.. ....+...+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 456789999999999988763111122 23444555667889999999999888754 211 112345556677
Q ss_pred HHhCCChHHHHHHHHHhhcC-----------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHH
Q 004114 455 YSECDSMDDAFSVFSNMTER-----------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA--GLKPD--DQIFIGVFS 519 (773)
Q Consensus 455 y~k~G~l~eA~~lf~~M~~~-----------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~--Gv~Pd--~~Ty~~LL~ 519 (773)
+...|++++|...+++..+. ....+..+...+...|++++|...+.+.... ...+. ..++..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88899999999998876531 1223445556677789999999999887553 11222 234444556
Q ss_pred HHHcCCChHHHHHHHHHHHHhcCCCCCcchh-----hhHHHHHHhCCCHHHHHHHHHhCCC-C-CC----HHHHHHHHHH
Q 004114 520 ACSALGDVVEGMLHFESMSKDYGIVPSMKHY-----VSIVDMLGSTGYLDEALEFIEKMPM-E-PD----VDVWEKLMNL 588 (773)
Q Consensus 520 a~~~~G~~deA~~if~~M~~~~Gi~Pd~~ty-----n~LI~~y~r~G~l~eA~~lf~~M~~-~-Pd----~~ty~~LI~a 588 (773)
.....|+.++|...+.....-..-......+ ...+..+...|+.+.|.+++..... . .. ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7778999999999888774421111111111 1122445668999999999877621 1 11 1124456667
Q ss_pred HHHcCChhHHHHHHHHHHHc
Q 004114 589 CRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 589 ~~~~G~~e~A~~~~e~m~el 608 (773)
+...|+.++|...++...+.
T Consensus 701 ~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 701 QILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88899999998888877654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.29 Score=59.38 Aligned_cols=199 Identities=13% Similarity=0.176 Sum_probs=114.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
+......++-+++|+.+|++... +......||. ..+.++.|.+.-+.. -...+|..|..+-...|.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCc
Confidence 45556677788888888876522 2333333332 234455555544332 133467777777777777
Q ss_pred hHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH-----
Q 004114 461 MDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFE----- 535 (773)
Q Consensus 461 l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~----- 535 (773)
+.+|++-|-+ ..|...|.-+|....+.|.+++-...+...++..-+|... +.||-||++.+++.+.++++.
T Consensus 1120 v~dAieSyik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A 1195 (1666)
T KOG0985|consen 1120 VKDAIESYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVA 1195 (1666)
T ss_pred hHHHHHHHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCch
Confidence 7777666644 3355566677777777777777666665555555555433 355666666666555443321
Q ss_pred -----------H-HHHhc-CCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 004114 536 -----------S-MSKDY-GIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDR 600 (773)
Q Consensus 536 -----------~-M~~~~-Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~ 600 (773)
. |-+.. =+-.++..|.-|...+...|.+..|.+.-++.. +..||.-+-.||...+.+..|.-
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn---s~ktWK~VcfaCvd~~EFrlAQi 1270 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN---STKTWKEVCFACVDKEEFRLAQI 1270 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc---chhHHHHHHHHHhchhhhhHHHh
Confidence 0 00000 000123345566666777777777776666543 56788888888887777766643
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.013 Score=66.01 Aligned_cols=117 Identities=16% Similarity=0.115 Sum_probs=56.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
|+..+...++++.|+++|+++.+.. |+. ...|++.+...++-.+|.+++.+.++.. +-+......-.+.|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 4444444555556666666655542 332 2234444444445555555555554331 2234444444444555555
Q ss_pred hHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQF 502 (773)
Q Consensus 461 l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM 502 (773)
.+.|+.+.+++.+ | +-.+|..|..+|...|++++|+..+..|
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 5555555555542 2 3335555555555555555555555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.83 Score=51.69 Aligned_cols=204 Identities=14% Similarity=0.098 Sum_probs=110.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHH---HHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHH
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDL-------PTFSQ---LMQACGDAKALEEAKAVHEHVERLLSPLRVSTYN 449 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~-------~ty~~---LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tyn 449 (773)
..+.---..|+.+...++|++.... ++|-. ..|.= .+-.=....+.+.++++++..++. ++....|+.
T Consensus 327 dylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFa 404 (677)
T KOG1915|consen 327 DYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFA 404 (677)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHH
Confidence 3444445556666666777666554 33311 11111 111112445666677777666662 444455666
Q ss_pred HHHHHHH----hCCChHHHHHHHHHhh--cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 004114 450 GILKMYS----ECDSMDDAFSVFSNMT--ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA 523 (773)
Q Consensus 450 aLI~ay~----k~G~l~eA~~lf~~M~--~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~ 523 (773)
.|--+|+ ++.++..|.+++-... .|-..+|-..|..=.+.+.+|.+..||++.++-+. -+..+|......=..
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~ 483 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETS 483 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHH
Confidence 5555554 3566667776665544 35555666666666666777777777777666432 144555555555556
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 004114 524 LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLM 586 (773)
Q Consensus 524 ~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI 586 (773)
.|+.|.|..+|.-....--+..-...|-+.|+-=...|.+++|..+++.+ ...+.+.+|-++.
T Consensus 484 LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 484 LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 67777777777655443112222233444444445666777777776665 2223334554443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.02 Score=61.69 Aligned_cols=136 Identities=15% Similarity=0.191 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHH
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAG-LKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVD 555 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G-v~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~ 555 (773)
.+|-.+|...-+.+..+.|..+|.+.++.+ +..+.....++|. +...++.+.|..+|+...+. +..+...|...|+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888888888888887543 2333333344443 33356777799999998887 4456778889999
Q ss_pred HHHhCCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchH
Q 004114 556 MLGSTGYLDEALEFIEKM-PMEPD----VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 556 ~y~r~G~l~eA~~lf~~M-~~~Pd----~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
.+.+.++.+.|..+|++. ...|. ..+|...|..=.+.|+++.+..+.+.+.++-|++...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999987 32333 3599999999999999999999999999998876533
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.11 Score=63.95 Aligned_cols=208 Identities=13% Similarity=0.109 Sum_probs=132.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhhhccHH----------------------------HHHHHHHHcCCHHHHHHHHHH
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQNNGTL----------------------------EQLDGLVKEGKVKEAIEVLGL 400 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~----------------------------~LI~a~~~~G~~~eAl~lf~~ 400 (773)
+...+-.||..|-..+++++|.++.. .... .++..+....++..+..+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~-~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICE-EHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHH
Confidence 34567889999989999999888632 0000 123333333334333333333
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHH
Q 004114 401 LEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWD 480 (773)
Q Consensus 401 M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn 480 (773)
|...+ -+...+-.|..+|-+.|..++|..+++++++.. +-++.+.|.+...|+.. ++++|+.++.+...+
T Consensus 109 i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------ 178 (906)
T PRK14720 109 ILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR------ 178 (906)
T ss_pred HHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------
Confidence 33321 123567778888889999999999999999987 45788999999999999 999999999875433
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHh
Q 004114 481 TMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIF-IGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGS 559 (773)
Q Consensus 481 ~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty-~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r 559 (773)
|....++.+++++|.++... .|+.+.+ ..++. .+....|..--+.++-.|...|-.
T Consensus 179 -----~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------------ki~~~~~~~~~~~~~~~l~~~y~~ 235 (906)
T PRK14720 179 -----FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIER----------------KVLGHREFTRLVGLLEDLYEPYKA 235 (906)
T ss_pred -----HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHH----------------HHHhhhccchhHHHHHHHHHHHhh
Confidence 77777899999999998874 3444333 22222 222211222223344455566667
Q ss_pred CCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004114 560 TGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCR 590 (773)
Q Consensus 560 ~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~ 590 (773)
..+++++.++|+.+ ...| |.....-|+..|.
T Consensus 236 ~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 236 LEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 77777777777766 3333 3444455555554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.19 Score=57.50 Aligned_cols=181 Identities=15% Similarity=0.147 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhCCChHHHHHHH
Q 004114 391 VKEAIEVLGLLEKQ-CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPL-RVSTYNGILKMYSECDSMDDAFSVF 468 (773)
Q Consensus 391 ~~eAl~lf~~M~~~-Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~p-d~~tynaLI~ay~k~G~l~eA~~lf 468 (773)
.+....++.+++.. .+.|+ .+|..+|+..-+..-++.|+.+|.+..+.+..+ ++.+++++|.-||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 33444455555433 23333 456777777777777888888888777776655 67777778777774 6677777777
Q ss_pred HHhhcC--CH-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHhcC-
Q 004114 469 SNMTER--DL-TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD--QIFIGVFSACSALGDVVEGMLHFESMSKDYG- 542 (773)
Q Consensus 469 ~~M~~~--d~-~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~--~Ty~~LL~a~~~~G~~deA~~if~~M~~~~G- 542 (773)
+--.++ |. .--...++-+...++-.-|..||++.+..++.||. ..|..+|.-=+.-|++..+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 744432 33 33355666667777777777777777777655554 4677777777777777777777666655544
Q ss_pred -CCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 543 -IVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 543 -i~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
..+...+-..+++.|.-.++...-..-++.|
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 3444444455666665555444333333333
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.29 Score=56.98 Aligned_cols=196 Identities=13% Similarity=0.297 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC----------------------ChHHHHHHHH
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD----------------------SMDDAFSVFS 469 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G----------------------~l~eA~~lf~ 469 (773)
.|++|.+-|.+.|.++.|..++++.+..- .++.-++.+-++|+.-. +++-...-|+
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 57777777888888888888887766642 34444555555554311 1222223333
Q ss_pred HhhcC---------------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHcCCChH
Q 004114 470 NMTER---------------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD------DQIFIGVFSACSALGDVV 528 (773)
Q Consensus 470 ~M~~~---------------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd------~~Ty~~LL~a~~~~G~~d 528 (773)
.+..+ ++.+|..-+..+ .|+..+-...|.+..+. +.|- ...|..+.+-|-..|+++
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 32211 333444333332 46667777777777653 3332 234677777788889999
Q ss_pred HHHHHHHHHHHhcCCCC--C-cchhhhHHHHHHhCCCHHHHHHHHHhCCCC--------------------CCHHHHHHH
Q 004114 529 EGMLHFESMSKDYGIVP--S-MKHYVSIVDMLGSTGYLDEALEFIEKMPME--------------------PDVDVWEKL 585 (773)
Q Consensus 529 eA~~if~~M~~~~Gi~P--d-~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~--------------------Pd~~ty~~L 585 (773)
.|+.+|++..+. ..+- + ..+|..-.++=.+..+++.|++++...-.. .+..+|..+
T Consensus 405 ~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 405 DARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 999998876543 1111 1 356666667777888888888888766111 134567777
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 586 MNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 586 I~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
++.--..|-++....+++.+.++.--.|
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTP 511 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATP 511 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCH
Confidence 7777777888888888888887754443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.12 Score=54.30 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=75.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcC
Q 004114 414 SQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNG 490 (773)
Q Consensus 414 ~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G 490 (773)
..+-.++...|+-+....+....... ...|.....+++....+.|++.+|+..|.+... +|..+|+.+-.+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 33444444455555544444432221 223444444455555555666666666655543 25555555555666666
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHH
Q 004114 491 LGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEF 569 (773)
Q Consensus 491 ~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~l 569 (773)
+.++|..-|.+..+. .|+ ...++.|.-.+.-.|+.+.|..++...... -.-|..+-..|.-.....|++++|.++
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 666655555555442 222 233444444455555555555555544322 122444444555555555555555555
Q ss_pred HH
Q 004114 570 IE 571 (773)
Q Consensus 570 f~ 571 (773)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 44
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0088 Score=55.06 Aligned_cols=81 Identities=11% Similarity=0.175 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCC--------ChHHHHHHHHHHHHhcCCCCCcc
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGL-KPDDQIFIGVFSACSALG--------DVVEGMLHFESMSKDYGIVPSMK 548 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv-~Pd~~Ty~~LL~a~~~~G--------~~deA~~if~~M~~~~Gi~Pd~~ 548 (773)
|-...|..+...+++.+...+|+.+++.|+ .|+..+|+.+|.+.++.. ++-+.+.+|..|... +++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 445667777777999999999999999999 999999999999987653 233456777888766 7888888
Q ss_pred hhhhHHHHHHh
Q 004114 549 HYVSIVDMLGS 559 (773)
Q Consensus 549 tyn~LI~~y~r 559 (773)
+|+.+|..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.059 Score=51.85 Aligned_cols=114 Identities=14% Similarity=0.121 Sum_probs=61.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHhCCCh
Q 004114 387 KEGKVKEAIEVLGLLEKQCISVD---LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRV--STYNGILKMYSECDSM 461 (773)
Q Consensus 387 ~~G~~~eAl~lf~~M~~~Gv~Pd---~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~--~tynaLI~ay~k~G~l 461 (773)
..++...+.+.++.+....- -+ ....-.+...+...|++++|...|+.++.....+.. ...-.|...+...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 36666666666666665421 11 112222334555667777777777776665422221 2333345556666666
Q ss_pred HHHHHHHHHhhcC--CHhHHHHHHHHHHHcCChHHHHHHHHH
Q 004114 462 DDAFSVFSNMTER--DLTSWDTMITGFAKNGLGEDAVDIFSQ 501 (773)
Q Consensus 462 ~eA~~lf~~M~~~--d~~tyn~LI~ay~~~G~~deAl~Lf~e 501 (773)
++|+.+++....+ ....+..+-..|.+.|+.++|...|++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666554432 233444555666666666666666654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0013 Score=45.53 Aligned_cols=27 Identities=33% Similarity=0.695 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE 473 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~ 473 (773)
+|++||++|++.|++++|.++|++|.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 344444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.064 Score=56.21 Aligned_cols=151 Identities=15% Similarity=0.091 Sum_probs=97.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCh
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSM 461 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l 461 (773)
-..+.-.|+-+.++.+..+.... ..-|........+...+.|++..|...+.+.... -++|..+|+.+--+|.+.|+.
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccCh
Confidence 33444555555555555443322 2234445555677777777777777777776654 356777777777777777777
Q ss_pred HHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 004114 462 DDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFE 535 (773)
Q Consensus 462 ~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~ 535 (773)
++|..-|.+..+ .+....|.|.-.|.-.|+.+.|..++......+.. |...-..|..+....|++++|+.+..
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777776653 25566677777777777777777777777665433 44445556666677777777776543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.033 Score=53.61 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=37.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCC
Q 004114 484 TGFAKNGLGEDAVDIFSQFKQAGLKPDD--QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG 561 (773)
Q Consensus 484 ~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~--~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G 561 (773)
..+...|++++|...|+........|.. .....|...+...|++++|+.+++.... -......+..+-++|.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD---EAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC---cchHHHHHHHHHHHHHHCC
Confidence 4445555555555555555554322211 1222334444455555555555533211 1112223334445555555
Q ss_pred CHHHHHHHHH
Q 004114 562 YLDEALEFIE 571 (773)
Q Consensus 562 ~l~eA~~lf~ 571 (773)
+.++|...|+
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 5555555554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.35 Score=53.14 Aligned_cols=104 Identities=22% Similarity=0.232 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHH
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG 558 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~ 558 (773)
.+..|.-+...|....|.++..+.+ .||..-|-..|.+++..++|++-..+..+ +-.+.-|..++++|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHH
Confidence 3444555555555555555544432 25555555566666666666554443211 112345555666666
Q ss_pred hCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 004114 559 STGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDR 600 (773)
Q Consensus 559 r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~ 600 (773)
+.|...+|..++..++ + ..-+..|.+.|++.+|..
T Consensus 249 ~~~~~~eA~~yI~k~~---~----~~rv~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP---D----EERVEMYLKCGDYKEAAQ 283 (319)
T ss_pred HCCCHHHHHHHHHhCC---h----HHHHHHHHHCCCHHHHHH
Confidence 6666666666655532 1 233444555555555533
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0094 Score=60.99 Aligned_cols=98 Identities=12% Similarity=0.228 Sum_probs=65.1
Q ss_pred HHHHHHHh--hcCCHhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-----------
Q 004114 464 AFSVFSNM--TERDLTSWDTMITGFAKN-----GLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALG----------- 525 (773)
Q Consensus 464 A~~lf~~M--~~~d~~tyn~LI~ay~~~-----G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G----------- 525 (773)
-...|+.. ..+|-.+|..+|..|.+. |.++=....++.|.+-|+.-|..+|+.||..+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556665 466778888888887654 677888888888888888888888988888765422
Q ss_pred -----ChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCC
Q 004114 526 -----DVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGY 562 (773)
Q Consensus 526 -----~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~ 562 (773)
..+-|++++++|.. +|+-||.+++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 23445555555533 3555555555555555555443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.26 Score=54.25 Aligned_cols=190 Identities=12% Similarity=0.115 Sum_probs=130.7
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCCh--H
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD-SMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLG--E 493 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G-~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~--d 493 (773)
+...+..++|+.+..++++... -+..+|+..-.++.+.| ++++|+..++++.+ ++..+|+.---.+.+.|.. +
T Consensus 47 l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 3445678899999999888642 24456666666667777 68999999998874 3666788666666666763 7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhC---CCH----HHH
Q 004114 494 DAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST---GYL----DEA 566 (773)
Q Consensus 494 eAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~---G~l----~eA 566 (773)
+++.++++|.+...+ +..+|....-++...|+++++++.++++.+. . .-+...|+...-++.+. |.. +++
T Consensus 126 ~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHH
Confidence 889999999876433 5678888888888999999999999999775 2 23455666555555444 222 456
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHcCCCCc
Q 004114 567 LEFIEKM-PMEP-DVDVWEKLMNLCRMHG----NLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 567 ~~lf~~M-~~~P-d~~ty~~LI~a~~~~G----~~e~A~~~~e~m~el~p~~~ 613 (773)
.++..++ ...| |...|+.+-..+...+ ....|..+...+.+..|...
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence 6666444 4455 5778888888887743 33456666666666565553
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.19 Score=52.59 Aligned_cols=161 Identities=17% Similarity=0.268 Sum_probs=99.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcC-----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTER-----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACS 522 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~~-----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~ 522 (773)
|--++-+...+|+.+.|...++.+..+ -+.-..+| -+-..|.+++|+++|+.+++.. +-|.+++.-=|...-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 333444444555555555555554421 11111111 1233577888888888887765 345566665555555
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC---ChhH
Q 004114 523 ALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHG---NLEL 597 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G---~~e~ 597 (773)
..|+--+|++.+....+. +.-|.+.|.-|.+.|...|++++|.-.+++| -+.|- ...+..+...+-..| +++.
T Consensus 132 a~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 566666777777776664 6678888888999999999999998888888 33443 333444444433333 5566
Q ss_pred HHHHHHHHHHcCCCCc
Q 004114 598 GDRCAEIVEQLDPSRL 613 (773)
Q Consensus 598 A~~~~e~m~el~p~~~ 613 (773)
|.+.++...++.|.+.
T Consensus 210 arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHHhChHhH
Confidence 6777777778877553
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.017 Score=65.35 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=98.6
Q ss_pred HHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004114 397 VLGLLEK---QCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL--LSPLRVSTYNGILKMYSECDSMDDAFSVFSNM 471 (773)
Q Consensus 397 lf~~M~~---~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~--G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M 471 (773)
++..|.+ .+...+...+..++..+....+++.+..++-..... ....-..|..++|+.|.+.|..++|+.++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 5555542 345667888888888888888889998888777765 22222334568999999999999998888754
Q ss_pred hc----CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 004114 472 TE----RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL 524 (773)
Q Consensus 472 ~~----~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~ 524 (773)
.. ||..|+|.||+.+.+.|++..|.++..+|.....-.+..|+...+.+|.+-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 32 688899999999999999999999998888877777778888777777765
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.043 Score=62.89 Aligned_cols=225 Identities=14% Similarity=0.137 Sum_probs=166.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
..-.-+.+.|++.+|.-+|+...... +-+...|.-|-..-+..++-..|+..+.+.++.. +-+..+.-+|.-.|...|
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhh
Confidence 35556789999999999999988773 2256688888878888888888888888888753 225677788888899999
Q ss_pred ChHHHHHHHHHhhc--C----------CHhHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHcCCC
Q 004114 460 SMDDAFSVFSNMTE--R----------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQ-AGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 460 ~l~eA~~lf~~M~~--~----------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~-~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
.-.+|+++|+.... | +...=+. +.+.....+.+..++|-++.. .+.++|......|--.|--.|.
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 99999999987642 1 0000000 222223334556667766644 5544666666666666778899
Q ss_pred hHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHH
Q 004114 527 VVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAE 603 (773)
Q Consensus 527 ~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e 603 (773)
+++|...|+.... +.| |...||-|-..++...+-++|..-+.+. .++|. +.++..|--.|...|.+++|.+.+-
T Consensus 446 fdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 9999999998754 456 6789999999999999999999999877 77887 5577778888999999999987777
Q ss_pred HHHHcCCC
Q 004114 604 IVEQLDPS 611 (773)
Q Consensus 604 ~m~el~p~ 611 (773)
....|.+.
T Consensus 523 ~AL~mq~k 530 (579)
T KOG1125|consen 523 EALSMQRK 530 (579)
T ss_pred HHHHhhhc
Confidence 66666544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.022 Score=64.49 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=88.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQ--CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC 458 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~--Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~ 458 (773)
++..+....++++|.+++.+.+.. ....-..|..++|+.|.+.|..+.++.++..=...|+-||..++|.||+++.+.
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~ 151 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKK 151 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhc
Confidence 566666777888899999888765 333344566799999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhcC----CHhHHHHHHHHHHHc
Q 004114 459 DSMDDAFSVFSNMTER----DLTSWDTMITGFAKN 489 (773)
Q Consensus 459 G~l~eA~~lf~~M~~~----d~~tyn~LI~ay~~~ 489 (773)
|++..|.+|...|... +..|+...+.+|.+-
T Consensus 152 ~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 152 GNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999888732 456666666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.031 Score=50.54 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=45.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 004114 516 GVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD----VDVWEKLMNLC 589 (773)
Q Consensus 516 ~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd----~~ty~~LI~a~ 589 (773)
.+...+...|++++|...|..+.....-.+ ....+..+..++.+.|++++|.+.|+.+ ...|+ ..++..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 333444445555555555555443211000 0123333455555555555555555544 11122 23444555555
Q ss_pred HHcCChhHHHHHHHHHHHcCCCC
Q 004114 590 RMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 590 ~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
...|+.+.|...++.+.+..|++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCC
Confidence 56666666666666666655554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.03 Score=52.44 Aligned_cols=97 Identities=9% Similarity=0.066 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 004114 514 FIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRM 591 (773)
Q Consensus 514 y~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~ 591 (773)
...+...+...|+.++|...|..+... -+.+...+..+...|.+.|++++|..+++.. ...| +..+|..+-..+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 444455555666666666666665442 1224455556666666666666666666655 2233 34555556666667
Q ss_pred cCChhHHHHHHHHHHHcCCCC
Q 004114 592 HGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 592 ~G~~e~A~~~~e~m~el~p~~ 612 (773)
.|+++.|...++...++.|++
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGEN 118 (135)
T ss_pred cCCHHHHHHHHHHHHHhcccc
Confidence 777777777777777666655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.045 Score=56.14 Aligned_cols=105 Identities=14% Similarity=0.193 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHH
Q 004114 407 SVDLPTFSQLMQACGD-----AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDT 481 (773)
Q Consensus 407 ~Pd~~ty~~LL~a~~~-----~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~ 481 (773)
.-|..+|..++..+.+ .|.++-....+..|.+-|+.-|..+|+.||+.+=| |.+- ...+|..|-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 4578888888888864 47788899999999999999999999999999887 3322 222333221
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 482 MITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 482 LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
-- .-.+-+-|++|+++|...|+.||..|+..|+..+++.+.
T Consensus 113 --~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 --MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred --cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 123457799999999999999999999999999977664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.022 Score=47.39 Aligned_cols=84 Identities=15% Similarity=0.269 Sum_probs=33.6
Q ss_pred HHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh
Q 004114 451 ILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDV 527 (773)
Q Consensus 451 LI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~ 527 (773)
+...+...|++++|..+|+++.+ | +..+|..+...+...+++++|+++|++...... .+..++..+...+...|+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhH
Confidence 33344444444444444444331 1 223344444444444444444444444433221 1112333333344444444
Q ss_pred HHHHHHHH
Q 004114 528 VEGMLHFE 535 (773)
Q Consensus 528 deA~~if~ 535 (773)
++|..++.
T Consensus 85 ~~a~~~~~ 92 (100)
T cd00189 85 EEALEAYE 92 (100)
T ss_pred HHHHHHHH
Confidence 44444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.58 E-value=1 Score=52.68 Aligned_cols=224 Identities=16% Similarity=0.158 Sum_probs=150.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHH
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDA 464 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA 464 (773)
++..|+-++|.+..+.-.+..++ +.++|..+--.+-...++++|...|....+.+- -+..++--|--.=+..|+++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhH
Confidence 45668888888887776665443 566777776667777889999999998888642 2455565554445566677766
Q ss_pred HHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHcCCChHHHHHHH
Q 004114 465 FSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG-LKPDDQIFIGVF------SACSALGDVVEGMLHF 534 (773)
Q Consensus 465 ~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G-v~Pd~~Ty~~LL------~a~~~~G~~deA~~if 534 (773)
...-....+ .....|..+..++...|....|..+.++....- -.|+...|.-.. .-..+.|.+++|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 666555543 256789999999999999999999999998764 346666554332 2345778889998877
Q ss_pred HHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHHcCCC
Q 004114 535 ESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCR--MHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 535 ~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~--~~G~~e~A~~~~e~m~el~p~ 611 (773)
..-... +.-....-....+.+.+.+++++|..++..+ .--||-.-|...+..+. -.+..+....++..+.+.-|.
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 655432 2222223335667888999999999999888 33577666665555444 334433334666666665544
Q ss_pred C
Q 004114 612 R 612 (773)
Q Consensus 612 ~ 612 (773)
.
T Consensus 287 ~ 287 (700)
T KOG1156|consen 287 H 287 (700)
T ss_pred c
Confidence 3
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.1 Score=54.94 Aligned_cols=159 Identities=11% Similarity=0.062 Sum_probs=103.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-
Q 004114 396 EVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER- 474 (773)
Q Consensus 396 ~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~- 474 (773)
++.+.+...-..-+..........|+..++.++|++..... . +..+...=+..+.|..+++-|+..+++|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34455554444444444445555688889999998877652 1 2223333345566777889999999999865
Q ss_pred CHhHHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchh
Q 004114 475 DLTSWDTMITGFA----KNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHY 550 (773)
Q Consensus 475 d~~tyn~LI~ay~----~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~ty 550 (773)
+-.|.+-|..++. -.+.+.+|.-+|++|-++ ..|+..+.+....+|...|++++|..++++...+ -.-+..+.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL 244 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETL 244 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHH
Confidence 3344444444443 346688899999998763 6788889999999999999999999888877654 22344444
Q ss_pred hhHHHHHHhCCCH
Q 004114 551 VSIVDMLGSTGYL 563 (773)
Q Consensus 551 n~LI~~y~r~G~l 563 (773)
..||.+-...|.-
T Consensus 245 ~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 245 ANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHHhCCC
Confidence 4444444444443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.15 Score=54.38 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHhh-cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004114 459 DSMDDAFSVFSNMT-ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ-AGLKPDDQIFIGVFSACSALGDVVEGMLHFES 536 (773)
Q Consensus 459 G~l~eA~~lf~~M~-~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~-~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~ 536 (773)
+++..+..+.++.+ +.+..+-+..-....+.|.+++|++-|....+ .|..| ...|+..+.-| +.++.+.|.++..+
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qyasALk~iSE 203 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQYASALKHISE 203 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 44444444444444 22333333333333444555555555544433 23333 23344433322 33444444444444
Q ss_pred HHH
Q 004114 537 MSK 539 (773)
Q Consensus 537 M~~ 539 (773)
+++
T Consensus 204 Iie 206 (459)
T KOG4340|consen 204 IIE 206 (459)
T ss_pred HHH
Confidence 433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.019 Score=47.72 Aligned_cols=91 Identities=19% Similarity=0.171 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHH
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG 558 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~ 558 (773)
|..+...+...|++++|+.+|+++.+.. ..+...+..+...+...+++++|..++....+. .+.+..++..+..++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 4556666667777777777777766542 112244555556666666666666666655432 1222345555555566
Q ss_pred hCCCHHHHHHHHHh
Q 004114 559 STGYLDEALEFIEK 572 (773)
Q Consensus 559 r~G~l~eA~~lf~~ 572 (773)
..|+.++|.+.+..
T Consensus 80 ~~~~~~~a~~~~~~ 93 (100)
T cd00189 80 KLGKYEEALEAYEK 93 (100)
T ss_pred HHHhHHHHHHHHHH
Confidence 66666666655544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.21 Score=57.08 Aligned_cols=166 Identities=12% Similarity=0.153 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-----CCHhHHHHHHHHHHHcCChHHHHHHH
Q 004114 426 LEEAKAVHEHVERL-LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE-----RDLTSWDTMITGFAKNGLGEDAVDIF 499 (773)
Q Consensus 426 le~A~~l~~~m~k~-G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~-----~d~~tyn~LI~ay~~~G~~deAl~Lf 499 (773)
.+....+++.+++. ...|+. +|..+|+.-.|..-++.|+.+|.+..+ .++..+++||.-||. ++.+-|..+|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 56666677776665 344444 788888888888889999999998874 277888999998884 5678888888
Q ss_pred HHHHHCCCCCCHHHH-HHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC--cchhhhHHHHHHhCCCHHHHHHHHHhC---
Q 004114 500 SQFKQAGLKPDDQIF-IGVFSACSALGDVVEGMLHFESMSKDYGIVPS--MKHYVSIVDMLGSTGYLDEALEFIEKM--- 573 (773)
Q Consensus 500 ~eM~~~Gv~Pd~~Ty-~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd--~~tyn~LI~~y~r~G~l~eA~~lf~~M--- 573 (773)
+-=++. -+|...| ...+.-+.+.++-..|+.+|++.... ++.|| ..+|..+|+-=...|++..+.++-+++
T Consensus 425 eLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 753332 2344434 55667777888888899999998877 77765 578999999889999999988887766
Q ss_pred -C--CCCCHHHHHHHHHHHHHcCChh
Q 004114 574 -P--MEPDVDVWEKLMNLCRMHGNLE 596 (773)
Q Consensus 574 -~--~~Pd~~ty~~LI~a~~~~G~~e 596 (773)
+ .++....-..+++-|.-.+...
T Consensus 502 f~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 502 FPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred cchhhcCCCChHHHHHHHHhhccccc
Confidence 2 2222223334455555444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.037 Score=59.61 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHH
Q 004114 411 PTFSQLMQACGDAKALEEAKAVHEHVERLL-SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGF 486 (773)
Q Consensus 411 ~ty~~LL~a~~~~g~le~A~~l~~~m~k~G-~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay 486 (773)
.+|..+|+.+-+.+.++.|+.+|.+.++.+ +..++.+..++|..++ .++.+.|.+||+...+ .+...|...|.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456667777777777777777777776442 2233333333333222 3455557777776653 3666677777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 487 AKNGLGEDAVDIFSQFKQAGLKPDD---QIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 487 ~~~G~~deAl~Lf~eM~~~Gv~Pd~---~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
...++.+.|..||++.... +.++. ..|...|.-=.+.|+++.+..+..++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776554 22222 2566666666666666666666666654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.65 Score=54.20 Aligned_cols=256 Identities=14% Similarity=0.141 Sum_probs=149.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhh------hhccHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSS------QNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQC------ISVDLPTFS 414 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~------~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~G------v~Pd~~ty~ 414 (773)
..-..+|...|......+-++-+.++. ......+-|..+++.+++++|-+.+...+... .+.+.-.|.
T Consensus 135 tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 135 TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred HhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 333445555565555666666666642 12222347888899999999998888775432 233444555
Q ss_pred HHHHHHHhcCCHHH---HHHHHHHHHHhCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHhhcC--CHhHHHHHHHHHH
Q 004114 415 QLMQACGDAKALEE---AKAVHEHVERLLSPLR--VSTYNGILKMYSECDSMDDAFSVFSNMTER--DLTSWDTMITGFA 487 (773)
Q Consensus 415 ~LL~a~~~~g~le~---A~~l~~~m~k~G~~pd--~~tynaLI~ay~k~G~l~eA~~lf~~M~~~--d~~tyn~LI~ay~ 487 (773)
-+....++.-+.-. +..++..++.+ -+| ...|++|.+-|.+.|.++.|..+|++.... ++.-|+.+-++|+
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHH
Confidence 55555554433322 22233333322 234 458999999999999999999999876543 4444555555554
Q ss_pred HcC----------------------ChHHHHHHHHHHHHCCC----------CCC-HHHHHHHHHHHHcCCChHHHHHHH
Q 004114 488 KNG----------------------LGEDAVDIFSQFKQAGL----------KPD-DQIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 488 ~~G----------------------~~deAl~Lf~eM~~~Gv----------~Pd-~~Ty~~LL~a~~~~G~~deA~~if 534 (773)
.-. +++-.+.-|+.+...+. .|+ +.+|..-+ -...|+..+-...|
T Consensus 293 ~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 293 QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHH
Confidence 321 12223333333333210 011 11121111 12345666667777
Q ss_pred HHHHHhcCCCCC------cchhhhHHHHHHhCCCHHHHHHHHHhCCCCC--C----HHHHHHHHHHHHHcCChhHHHHHH
Q 004114 535 ESMSKDYGIVPS------MKHYVSIVDMLGSTGYLDEALEFIEKMPMEP--D----VDVWEKLMNLCRMHGNLELGDRCA 602 (773)
Q Consensus 535 ~~M~~~~Gi~Pd------~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~P--d----~~ty~~LI~a~~~~G~~e~A~~~~ 602 (773)
.+..+. +.|- ...|..+.+.|-..|+++.|..+|++.-..| . ..+|..-...=.++.+++.|.++.
T Consensus 371 teAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm 448 (835)
T KOG2047|consen 371 TEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLM 448 (835)
T ss_pred HHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 777664 5553 2457788999999999999999999882222 1 346666666666778888777766
Q ss_pred HHHHHc
Q 004114 603 EIVEQL 608 (773)
Q Consensus 603 e~m~el 608 (773)
+....+
T Consensus 449 ~~A~~v 454 (835)
T KOG2047|consen 449 RRATHV 454 (835)
T ss_pred HhhhcC
Confidence 655443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.74 Score=55.56 Aligned_cols=222 Identities=14% Similarity=0.155 Sum_probs=142.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACG--DAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC 458 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~--~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~ 458 (773)
=|......++++.|+....++.+. .|+. .|..+++|+. +.|..++|..+++.....+.. |..|..+|-.+|.+.
T Consensus 15 pi~d~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 15 PIYDLLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDL 90 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHH
Confidence 355667788899999999888876 4553 4566677664 788999999888877666544 788889999999999
Q ss_pred CChHHHHHHHHHhhc--CCHhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-------
Q 004114 459 DSMDDAFSVFSNMTE--RDLTSWDTMITGFAKNGLGED----AVDIFSQFKQAGLKPDDQIFIGVFSACSALG------- 525 (773)
Q Consensus 459 G~l~eA~~lf~~M~~--~d~~tyn~LI~ay~~~G~~de----Al~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G------- 525 (773)
++.++|..+++.... |+..--..+..+|++.+.+.+ |+++++- +.-....|-++++.....-
T Consensus 91 ~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-----FPKRAYYFWSVISLILQSIFSENELL 165 (932)
T ss_pred hhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCcccchHHHHHHHHHHhccCCcccc
Confidence 999999999998874 555556666777887777654 4555542 3334466666666554332
Q ss_pred ---ChHHHHHHHHHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHHHHHHHh-C-CC--CCCHHHHHHHHHHHHHcCChhH
Q 004114 526 ---DVVEGMLHFESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEALEFIEK-M-PM--EPDVDVWEKLMNLCRMHGNLEL 597 (773)
Q Consensus 526 ---~~deA~~if~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~-M-~~--~Pd~~ty~~LI~a~~~~G~~e~ 597 (773)
-+.-|.+.++.+.++-| +.. ..-.-.-+..+-..|+.++|++++.. . .. .-+...-+.-+..+...+++.+
T Consensus 166 ~~i~l~LA~~m~~~~l~~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKG-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred cchhHHHHHHHHHHHhccCC-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 23345666666666533 221 11111223345567889999998832 2 11 1123333445566666777776
Q ss_pred HHHHHHHHHHcCCCC
Q 004114 598 GDRCAEIVEQLDPSR 612 (773)
Q Consensus 598 A~~~~e~m~el~p~~ 612 (773)
..++...+.+..+++
T Consensus 245 l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 245 LFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHhCCcc
Confidence 666666666666665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.23 Score=57.64 Aligned_cols=202 Identities=17% Similarity=0.152 Sum_probs=127.3
Q ss_pred HHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 383 DGLVKEGK--VKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 383 ~a~~~~G~--~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
++|.+..+ +-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|-++|. +.|.+ |-.+.||.....
T Consensus 606 kAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk---~~G~e------nRAlEmyTDlRM 673 (1081)
T KOG1538|consen 606 KAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK---RSGHE------NRALEMYTDLRM 673 (1081)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH---HcCch------hhHHHHHHHHHH
Confidence 45555443 34455557888899988998654 445778889999988885 45654 445667777677
Q ss_pred hHHHHHHHHHhh---------cC-----CHhHHHHHHHHHHHcCChHHHHHHHHH-----H-HHCCCCC---CHHHHHHH
Q 004114 461 MDDAFSVFSNMT---------ER-----DLTSWDTMITGFAKNGLGEDAVDIFSQ-----F-KQAGLKP---DDQIFIGV 517 (773)
Q Consensus 461 l~eA~~lf~~M~---------~~-----d~~tyn~LI~ay~~~G~~deAl~Lf~e-----M-~~~Gv~P---d~~Ty~~L 517 (773)
+|.|.+++..-. ++ ++.-=-+-...+...|+.++|+.+.-+ | .+-+-+. +..+...+
T Consensus 674 FD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~ 753 (1081)
T KOG1538|consen 674 FDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLC 753 (1081)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHH
Confidence 777776664321 11 111112334455566777776665422 1 1112222 33345544
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCC-CCCCHHH-----------HHHH
Q 004114 518 FSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMP-MEPDVDV-----------WEKL 585 (773)
Q Consensus 518 L~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~-~~Pd~~t-----------y~~L 585 (773)
..-+-+...+..|.++|.+|-. ...++++....++|.+|..+-+..| +.||+.. +.-.
T Consensus 754 a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEA 823 (1081)
T KOG1538|consen 754 ATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEA 823 (1081)
T ss_pred HHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHH
Confidence 4445566777888899988832 2468899999999999999999984 4555432 3344
Q ss_pred HHHHHHcCChhHHHHHHHHHH
Q 004114 586 MNLCRMHGNLELGDRCAEIVE 606 (773)
Q Consensus 586 I~a~~~~G~~e~A~~~~e~m~ 606 (773)
-.||.+.|+-.+|.++++.+-
T Consensus 824 qkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 824 QKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred HHHHHHhcchHHHHHHHHHhh
Confidence 567888888888887777664
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.26 Score=56.89 Aligned_cols=215 Identities=15% Similarity=0.205 Sum_probs=118.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHH--HHHHHH--
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNG--ILKMYS-- 456 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tyna--LI~ay~-- 456 (773)
-|..+...|++++|+....+++..+ +-|...+..-+-++.+.+.+++|+.+.+. .+. ..+++. +=.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHH
Confidence 3566677778888888888877654 33455666666677777888888744332 211 111222 245554
Q ss_pred hCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHH
Q 004114 457 ECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFE 535 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~ 535 (773)
+.+++|+|+..++....-|..+-..=.-.+-+.|++++|+++|..+.+.+..- |...-..|+.+-.. -.+. +.
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~- 164 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LL- 164 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HH-
Confidence 57788888888885544444444444556677888888888888887665421 11112222221111 1111 11
Q ss_pred HHHHhcCCCCCcchhhhHH---HHHHhCCCHHHHHHHHHhC----------C------CCCCHH-HHHHHHHHHHHcCCh
Q 004114 536 SMSKDYGIVPSMKHYVSIV---DMLGSTGYLDEALEFIEKM----------P------MEPDVD-VWEKLMNLCRMHGNL 595 (773)
Q Consensus 536 ~M~~~~Gi~Pd~~tyn~LI---~~y~r~G~l~eA~~lf~~M----------~------~~Pd~~-ty~~LI~a~~~~G~~ 595 (773)
+.....| ..+|..+. -.+...|++.+|+++++.. + ++-.+. +---|.-.+...|+.
T Consensus 165 ---q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 165 ---QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred ---HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 1112333 22444333 3455678888888887654 0 001111 112234456677888
Q ss_pred hHHHHHHHHHHHcCCCC
Q 004114 596 ELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 596 e~A~~~~e~m~el~p~~ 612 (773)
++|..++..+.+..|-+
T Consensus 241 ~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 88888777776665554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.11 Score=46.97 Aligned_cols=91 Identities=11% Similarity=0.009 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--CC----HhHHHHHHHHH
Q 004114 415 QLMQACGDAKALEEAKAVHEHVERLLSP--LRVSTYNGILKMYSECDSMDDAFSVFSNMTE--RD----LTSWDTMITGF 486 (773)
Q Consensus 415 ~LL~a~~~~g~le~A~~l~~~m~k~G~~--pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~d----~~tyn~LI~ay 486 (773)
.+...+.+.|++++|...+..+++.... .....+..+..++.+.|++++|..+|+.+.. |+ ..++..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3334444455555555555555443210 0122333444555555555555555554432 11 22344444455
Q ss_pred HHcCChHHHHHHHHHHHHC
Q 004114 487 AKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 487 ~~~G~~deAl~Lf~eM~~~ 505 (773)
...|+.++|...++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555555543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.18 Score=54.24 Aligned_cols=145 Identities=15% Similarity=0.274 Sum_probs=67.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHc-CChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHH
Q 004114 450 GILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKN-GLGEDAVDIFSQFKQ----AGLKPD--DQIFIGVFSACS 522 (773)
Q Consensus 450 aLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~-G~~deAl~Lf~eM~~----~Gv~Pd--~~Ty~~LL~a~~ 522 (773)
..++.|.+.|+...|-+++.++ -..|... |++++|++.|.+-.+ .+ .+. ..++..+...+.
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~l-----------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKEL-----------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHH-----------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 3344555566655555554443 2334344 566666666655433 12 111 123455555666
Q ss_pred cCCChHHHHHHHHHHHHhcCCCC-----Cc-chhhhHHHHHHhCCCHHHHHHHHHhC-CCCC----C--HHHHHHHHHHH
Q 004114 523 ALGDVVEGMLHFESMSKDYGIVP-----SM-KHYVSIVDMLGSTGYLDEALEFIEKM-PMEP----D--VDVWEKLMNLC 589 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~~Gi~P-----d~-~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P----d--~~ty~~LI~a~ 589 (773)
+.|++++|..+|+++...+ +.. .+ ..|-..+-++...|++..|.+.|++. ...| + ......||.+|
T Consensus 167 ~l~~y~~A~~~~e~~~~~~-l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKC-LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTC-CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHh-hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 6777777777777665431 111 11 12223333455567777777777765 2222 1 23444555554
Q ss_pred HHcCChhHHHHHHHHHHHc
Q 004114 590 RMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 590 ~~~G~~e~A~~~~e~m~el 608 (773)
..|+.+....++..+..+
T Consensus 246 -~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 246 -EEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp -HTT-CCCHHHHCHHHTTS
T ss_pred -HhCCHHHHHHHHHHHccc
Confidence 345555555555444443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.22 E-value=2.3 Score=49.42 Aligned_cols=175 Identities=13% Similarity=0.092 Sum_probs=102.9
Q ss_pred HHHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHH--------HHHHHHHcCCHHHHHHHH
Q 004114 327 SRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLE--------QLDGLVKEGKVKEAIEVL 398 (773)
Q Consensus 327 a~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~--------LI~a~~~~G~~~eAl~lf 398 (773)
...-|+.+......++..+ +-|...+-.=+-+.-..+++++|+.++..+.... =..++.+.+..++|+..+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 3455666666666666555 3344455555556667788888888755444322 233344778888888877
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-C--------------------------HHHHHH
Q 004114 399 GLLEKQCISVDL-PTFSQLMQACGDAKALEEAKAVHEHVERLLSPL-R--------------------------VSTYNG 450 (773)
Q Consensus 399 ~~M~~~Gv~Pd~-~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~p-d--------------------------~~tyna 450 (773)
. |+.++. .+...-...|-+.+++++|..+|+.+.+.+.+- | ..+|..
T Consensus 103 ~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel 177 (652)
T KOG2376|consen 103 K-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYEL 177 (652)
T ss_pred h-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHH
Confidence 6 333332 244444555778888888888888886654310 0 112222
Q ss_pred H---HHHHHhCCChHHHHHHHHHhh--------cCC-----Hh-----HHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004114 451 I---LKMYSECDSMDDAFSVFSNMT--------ERD-----LT-----SWDTMITGFAKNGLGEDAVDIFSQFKQAGL 507 (773)
Q Consensus 451 L---I~ay~k~G~l~eA~~lf~~M~--------~~d-----~~-----tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv 507 (773)
+ .-.+...|++.+|+++++... +-| .. .---|.-.+-..|+.++|..+|...+....
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 2 223445678888888887662 111 11 111233455667888888888888777653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.53 Score=50.65 Aligned_cols=128 Identities=16% Similarity=0.248 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhC-CChHHHHHHHHHhhc-----CC----HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCH
Q 004114 447 TYNGILKMYSEC-DSMDDAFSVFSNMTE-----RD----LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLK-----PDD 511 (773)
Q Consensus 447 tynaLI~ay~k~-G~l~eA~~lf~~M~~-----~d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~-----Pd~ 511 (773)
++..+-.+|-+. |++++|++.|.+..+ .. ..++.-+...+.+.|++++|+++|+++...-+. .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 444555666666 788888888876652 11 235667788899999999999999998775332 222
Q ss_pred H-HHHHHHHHHHcCCChHHHHHHHHHHHHh-cCCCCC--cchhhhHHHHHHh--CCCHHHHHHHHHhCC
Q 004114 512 Q-IFIGVFSACSALGDVVEGMLHFESMSKD-YGIVPS--MKHYVSIVDMLGS--TGYLDEALEFIEKMP 574 (773)
Q Consensus 512 ~-Ty~~LL~a~~~~G~~deA~~if~~M~~~-~Gi~Pd--~~tyn~LI~~y~r--~G~l~eA~~lf~~M~ 574 (773)
. .|...+-++...|++..|.+.|++.... .++..+ ......||+++-. ...+.+|..-|+.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2 3333444556678999999999887432 122222 2344456666643 345777777777773
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.55 Score=57.10 Aligned_cols=234 Identities=12% Similarity=0.164 Sum_probs=150.4
Q ss_pred HHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHh----hhhccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004114 329 RQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRS----SQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQ 404 (773)
Q Consensus 329 ~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v----~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~ 404 (773)
..|+.+..+... +..+....+.||+- .+.++.|.+. -....|..+..+-.+.|.+.+|++-|-+.
T Consensus 1062 ~LyEEAF~ifkk-----f~~n~~A~~VLie~---i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKK-----FDMNVSAIQVLIEN---IGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred hHHHHHHHHHHH-----hcccHHHHHHHHHH---hhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 444444444432 33444455555543 3455555542 12223334788888889999998877542
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh------------
Q 004114 405 CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT------------ 472 (773)
Q Consensus 405 Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~------------ 472 (773)
-|+..|.-++.++.+.|.+++-...+....+..-+|.+. +.||-+|+|.+++.+-++++..--
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf 1205 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCF 1205 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHh
Confidence 277789999999999999999998888877777666654 578899999998888776542110
Q ss_pred -----c------CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhc
Q 004114 473 -----E------RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDY 541 (773)
Q Consensus 473 -----~------~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~ 541 (773)
+ .++.-|.-|...+...|.+..|.+.-++. -+..||.-+-.||...+.+.-|. | +
T Consensus 1206 ~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----i---C 1271 (1666)
T KOG0985|consen 1206 EEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----I---C 1271 (1666)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----h---c
Confidence 0 14445777777777777777776655432 35568888888888776654442 2 2
Q ss_pred CC--CCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 004114 542 GI--VPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMH 592 (773)
Q Consensus 542 Gi--~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~ 592 (773)
|+ .....-..-||..|-..|.+++...+++.- |++. ...+|+-|.-.|.+-
T Consensus 1272 GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1272 GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 33 223344556888888888888888888764 4432 344555555555544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.34 Score=54.12 Aligned_cols=161 Identities=15% Similarity=0.138 Sum_probs=102.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhcC---CHh----HHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004114 450 GILKMYSECDSMDDAFSVFSNMTER---DLT----SWDTMITGFAK---NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFS 519 (773)
Q Consensus 450 aLI~ay~k~G~l~eA~~lf~~M~~~---d~~----tyn~LI~ay~~---~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~ 519 (773)
.|+-.|....+++..+++.+.|... ++. .---..-++-+ .|+.++|+.++..+....-.++..||..+-.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688888888888888888753 111 11123334555 6888888888888666666677777776665
Q ss_pred HHHc---------CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHH----HHHHHH---HhC----C---CC
Q 004114 520 ACSA---------LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD----EALEFI---EKM----P---ME 576 (773)
Q Consensus 520 a~~~---------~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~----eA~~lf---~~M----~---~~ 576 (773)
.|-. ...+++|...|. +.+.+.|+..+--.++..+..+|.-. ++.++- ..+ + -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~---kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYR---KGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHH---HHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5521 223666666665 33556666554444455555555322 222222 111 1 23
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 577 PDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 577 Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
.|-..+.+++.++.-.|+.+.|.++++.|.++.|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 5677788999999999999999999999999987663
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.54 Score=54.91 Aligned_cols=224 Identities=17% Similarity=0.137 Sum_probs=161.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 004114 387 KEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFS 466 (773)
Q Consensus 387 ~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~ 466 (773)
..+++...+.+.+..++. ..--..|....--.+...|+.++|....+.-++..+. +.+.|..+--.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 456677777777777663 2222334433333466789999999988877775433 55677777777777889999999
Q ss_pred HHHHhh--cC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcC
Q 004114 467 VFSNMT--ER-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYG 542 (773)
Q Consensus 467 lf~~M~--~~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~G 542 (773)
.|.... +| +...|--+--.=++.++++.......++.+. .|. ...|..+..+..-.|+...|..+.+...+...
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 998765 34 6667776666667788888888888888774 344 35678888888899999999999999877643
Q ss_pred CCCCcchhhhHH------HHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch
Q 004114 543 IVPSMKHYVSIV------DMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN 614 (773)
Q Consensus 543 i~Pd~~tyn~LI------~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~ 614 (773)
-.|+...|.-+. ..+.++|.+++|++.+.+- +..-| ...-.+-...+.+.+++|+|..++..+....|++..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 356666655443 3456789999999888776 21122 223344556678899999999999999999999963
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.56 Score=50.16 Aligned_cols=244 Identities=15% Similarity=0.110 Sum_probs=135.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhhhccHH-------H--HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQNNGTL-------E--QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQA 419 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~-------~--LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a 419 (773)
+....+.|-.+|-+..++..|..-..-.... . -...+.+++.+.+|+++...|... |....-..-+.+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqa 119 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQA 119 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHH
Confidence 4556677777888888887777632111110 0 245567788888999988877553 222222222222
Q ss_pred H--HhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC----CHhHHHHHHHHHHHcCChH
Q 004114 420 C--GDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER----DLTSWDTMITGFAKNGLGE 493 (773)
Q Consensus 420 ~--~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~----d~~tyn~LI~ay~~~G~~d 493 (773)
. -..+++..++.+.+++-..| +..+.+..--...|.|+.++|.+-|....+- ..+.||.-+.-| +.|+.+
T Consensus 120 AIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qya 195 (459)
T KOG4340|consen 120 AIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYA 195 (459)
T ss_pred HHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHH
Confidence 2 24566777777777654322 3333333444456788888888888877642 556777666555 456788
Q ss_pred HHHHHHHHHHHCCCC-------------CCHH----H----HHHHHHHH-------HcCCChHHHHHHHHHHHHhcCCCC
Q 004114 494 DAVDIFSQFKQAGLK-------------PDDQ----I----FIGVFSAC-------SALGDVVEGMLHFESMSKDYGIVP 545 (773)
Q Consensus 494 eAl~Lf~eM~~~Gv~-------------Pd~~----T----y~~LL~a~-------~~~G~~deA~~if~~M~~~~Gi~P 545 (773)
.|+++..++.++|++ ||+. | -..|+.|+ .+.++.+.|.+.+-.|.-+..-..
T Consensus 196 sALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~el 275 (459)
T KOG4340|consen 196 SALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEEL 275 (459)
T ss_pred HHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccC
Confidence 888888888877764 3321 1 12233322 345666666666655533222233
Q ss_pred Ccchhh--hHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 004114 546 SMKHYV--SIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRC 601 (773)
Q Consensus 546 d~~tyn--~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~ 601 (773)
|+.|.. +|.++=++-+.--+-+.++-.+ |+ -..|+..|+-.||+..-++.|..+
T Consensus 276 DPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPf--P~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 276 DPVTLHNQALMNMDARPTEGFEKLQFLLQQNPF--PPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred CchhhhHHHHhcccCCccccHHHHHHHHhcCCC--ChHHHHHHHHHHhhhHHHhHHHHH
Confidence 444433 3333333333322333333333 32 246777777778877777666444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.17 Score=59.29 Aligned_cols=140 Identities=13% Similarity=0.024 Sum_probs=90.6
Q ss_pred CCHhHHHHHHHHHHHcCC-----hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcC--------CChHHHHHHHHHHHH
Q 004114 474 RDLTSWDTMITGFAKNGL-----GEDAVDIFSQFKQAGLKPDD-QIFIGVFSACSAL--------GDVVEGMLHFESMSK 539 (773)
Q Consensus 474 ~d~~tyn~LI~ay~~~G~-----~deAl~Lf~eM~~~Gv~Pd~-~Ty~~LL~a~~~~--------G~~deA~~if~~M~~ 539 (773)
.+...|..++.|.....+ .++|..+|++..+ ..|+- ..|..+..++... .++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 366677777766544322 5577777777766 34653 2333332222211 112233333332211
Q ss_pred hcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchH
Q 004114 540 DYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 540 ~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
......+...|.++.-.+...|++++|...+++. .+.|+...|..+-..+...|+.++|...++...+++|..+..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 1012334567777777777789999999999887 667888889999999999999999999999999999988643
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.2 Score=49.12 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004114 512 QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRM 591 (773)
Q Consensus 512 ~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~ 591 (773)
.+.+..|.-|...|....|.++ .+++.+ |+..-|-..|.+|+..++|++-.++... +...+-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl----~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKL----KKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHH----HHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 3556667777788888777665 455566 7888999999999999999999987664 3345778889999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCchHHHHcCCchhhhhHHHHHhc
Q 004114 592 HGNLELGDRCAEIVEQLDPSRLNEKSKAGLVPVNASELAKEKE 634 (773)
Q Consensus 592 ~G~~e~A~~~~e~m~el~p~~~~~y~~aG~~~~~v~~lmk~~~ 634 (773)
.|+..+|.....++.. ......|...|.|..++....+.+.
T Consensus 250 ~~~~~eA~~yI~k~~~--~~rv~~y~~~~~~~~A~~~A~~~kd 290 (319)
T PF04840_consen 250 YGNKKEASKYIPKIPD--EERVEMYLKCGDYKEAAQEAFKEKD 290 (319)
T ss_pred CCCHHHHHHHHHhCCh--HHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 9998888777666322 2224678899998766655544433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=2.2 Score=44.96 Aligned_cols=185 Identities=12% Similarity=0.193 Sum_probs=134.7
Q ss_pred HcCCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHhCCC
Q 004114 387 KEGKVKEAIEVLGLLEK---QC-ISVDLP-TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKM-YSECDS 460 (773)
Q Consensus 387 ~~G~~~eAl~lf~~M~~---~G-v~Pd~~-ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~a-y~k~G~ 460 (773)
...+.++.++++.+|+. .| ..++.. .|.-++-|....+..+.|...++.+.+.- |...-...|=.| +-..|.
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhc
Confidence 34567888888888864 34 666765 46677778888899999999999988873 332221222222 334689
Q ss_pred hHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 461 MDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 461 l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
.++|+++++.+.+. |.++|--=|...-..|+--+|++-+.+..+. +.-|...|.-|-.-|...|++++|.-.+++|
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999853 6677877777777888888999888887765 6779999999999999999999999999998
Q ss_pred HHhcCCCCCcc-hhhhHHHHHHhCC---CHHHHHHHHHhC-CCCC
Q 004114 538 SKDYGIVPSMK-HYVSIVDMLGSTG---YLDEALEFIEKM-PMEP 577 (773)
Q Consensus 538 ~~~~Gi~Pd~~-tyn~LI~~y~r~G---~l~eA~~lf~~M-~~~P 577 (773)
.- +.|... -+..+.+.+-..| .++-|.+.+... .+.|
T Consensus 181 ll---~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LL---IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 64 456443 3345556555444 456677777765 4344
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.28 Score=46.11 Aligned_cols=107 Identities=15% Similarity=0.044 Sum_probs=71.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVD--LPTFSQLMQACGDAKALEEAKAVHEHVERLLSP--LRVSTYNGILKMYS 456 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd--~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~--pd~~tynaLI~ay~ 456 (773)
+-.++-..|+.++|+.+|++..+.|+... ...+-.+-.++...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667778889999999999888886654 235566777778888999999988888765211 11222222334666
Q ss_pred hCCChHHHHHHHHHhhcCCHhHHHHHHHHHH
Q 004114 457 ECDSMDDAFSVFSNMTERDLTSWDTMITGFA 487 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~ 487 (773)
..|+.++|++.+-....+++..|.--|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888877666555555555555554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.11 Score=57.90 Aligned_cols=87 Identities=11% Similarity=0.005 Sum_probs=38.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChH
Q 004114 383 DGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMD 462 (773)
Q Consensus 383 ~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~ 462 (773)
..+...|++++|+++|.+.++.. .-+...|..+..++...|++++|+..++.+++.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 33444455555555555554432 1133344444444444455555555554444432 112333444444444444444
Q ss_pred HHHHHHHHh
Q 004114 463 DAFSVFSNM 471 (773)
Q Consensus 463 eA~~lf~~M 471 (773)
+|+..|++.
T Consensus 88 eA~~~~~~a 96 (356)
T PLN03088 88 TAKAALEKG 96 (356)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.5 Score=46.68 Aligned_cols=124 Identities=15% Similarity=0.094 Sum_probs=76.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVD--LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC 458 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd--~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~ 458 (773)
+...+...|++++|+..|++..+....+. ...+..+..++.+.|+.++|...+.+.++.. +-+...+..+..+|...
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc
Confidence 45566677888888888887765432222 3566777777778888888888888877753 22455566666777777
Q ss_pred CChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 459 DSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 459 G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
|+...|..-++... ..+++|++++++.... .|+. |..++..+...|+
T Consensus 120 g~~~~a~~~~~~A~-----------------~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 120 GEKAEEAGDQDEAE-----------------ALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGR 166 (172)
T ss_pred CChHhHhhCHHHHH-----------------HHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCc
Confidence 76555554433321 1256677777776653 3443 5555555555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.045 Score=47.36 Aligned_cols=9 Identities=33% Similarity=0.364 Sum_probs=2.9
Q ss_pred cCChHHHHH
Q 004114 489 NGLGEDAVD 497 (773)
Q Consensus 489 ~G~~deAl~ 497 (773)
.|++++|++
T Consensus 71 l~~y~eAi~ 79 (84)
T PF12895_consen 71 LGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHH
T ss_pred hCCHHHHHH
Confidence 333333333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.9 Score=45.43 Aligned_cols=59 Identities=22% Similarity=0.179 Sum_probs=34.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTF--SQLMQACGDAKALEEAKAVHEHVERL 439 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty--~~LL~a~~~~g~le~A~~l~~~m~k~ 439 (773)
....+.+.|++++|++.|+++...-........ -.+..++-+.+++++|...++..++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445556677777777777777664222211111 22344556667777777777777665
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.58 E-value=2.1 Score=47.58 Aligned_cols=27 Identities=7% Similarity=0.079 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
.|.+.+...|..|+++.|++|++.-+.
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 344555555555555555555554433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.082 Score=58.99 Aligned_cols=100 Identities=17% Similarity=0.118 Sum_probs=67.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCC
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTG 561 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G 561 (773)
...+...|++++|+++|++.++..- -+...|..+..+|...|++++|+..++..... .| +...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhC
Confidence 3455667888888888888877432 23456677777778888888888888777543 34 4556777777778888
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHH
Q 004114 562 YLDEALEFIEKM-PMEPDVDVWEKLM 586 (773)
Q Consensus 562 ~l~eA~~lf~~M-~~~Pd~~ty~~LI 586 (773)
++++|...|++. .+.|+-.....++
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 888888888766 4455544333333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.45 Score=46.69 Aligned_cols=115 Identities=11% Similarity=0.093 Sum_probs=77.3
Q ss_pred HHHHHHHhcCChhHHHHhhhhcc---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 004114 355 QVLNNCKHEDDFAEASRSSQNNG---TLEQLDGLVKEGKVKEAIEVLGLLEKQCISV-DLPTFSQLMQACGDAKALEEAK 430 (773)
Q Consensus 355 ~LI~~y~k~g~~~~A~~v~~~~~---~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~P-d~~ty~~LL~a~~~~g~le~A~ 430 (773)
.|.+.+.+-|.+.....+-.... .-++-.-+...|++++|..+|+.+... .| +..-|-.|-.+|-..|++++|.
T Consensus 12 ~~~~f~~~Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI 89 (157)
T PRK15363 12 DTMRFFRRGGSLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAI 89 (157)
T ss_pred HHHHHHHcCCcHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHH
Confidence 34444444455555444310111 123556667889999999999888765 33 3344555555666778899999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 431 AVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 431 ~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
..|........ -|...+-.+-.+|.+.|+++.|++.|+...
T Consensus 90 ~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 90 YAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99988888763 467777778888888899999988887654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.86 Score=56.55 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=17.3
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHH
Q 004114 380 EQLDGLVKEG--KVKEAIEVLGLLEK 403 (773)
Q Consensus 380 ~LI~a~~~~G--~~~eAl~lf~~M~~ 403 (773)
.+|.+|++.+ .+++|+....+...
T Consensus 795 ~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 795 FILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 4777888877 77777777766664
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.54 E-value=3.8 Score=49.06 Aligned_cols=171 Identities=13% Similarity=0.161 Sum_probs=100.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 004114 440 LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIG 516 (773)
Q Consensus 440 G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~ 516 (773)
.+.-|..+|..|.-++..+|+++.+.+.|++... .-...|+.+-..|.-.|.-..|..+.++-....-.|+..+--.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3445666777777777777777777777776542 2345677777777777777777777765544332344333322
Q ss_pred HHH-HHH-cCCChHHHHHHHHHHHH--------------------------------------------------hcCCC
Q 004114 517 VFS-ACS-ALGDVVEGMLHFESMSK--------------------------------------------------DYGIV 544 (773)
Q Consensus 517 LL~-a~~-~~G~~deA~~if~~M~~--------------------------------------------------~~Gi~ 544 (773)
++. .|. +.+.+++|..+..+... .-+-.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 222 222 23444555444333322 11222
Q ss_pred CCcchhhhHHHHHHhCCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 545 PSMKHYVSIVDMLGSTGYLDEALEFIEKM---PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 545 Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M---~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
|++..|-+ --|+-.++++.|++...+. +-.-+...|..|.-.+...+++..|+.+.+...+--|++
T Consensus 478 p~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 478 PLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred chHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 33333322 2356667888888777655 224567888888888888888888888887766555553
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.37 Score=47.67 Aligned_cols=127 Identities=12% Similarity=0.129 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHH
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR--VSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMIT 484 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd--~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ 484 (773)
...+..+...+...|++++|...|++.++....+. ...+..+..+|.+.|+.++|+..+++..+ .+...+..+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34566666777788999999999988887543322 35677788888888888888888887763 25566666777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCC
Q 004114 485 GFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGY 562 (773)
Q Consensus 485 ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~ 562 (773)
.|...|+...+..-+++... .+++|.+++....+ ..|+ .|..++..+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~---~~p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIR---LAPN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHh---hCch--hHHHHHHHHHhcCc
Confidence 77777776665554443321 25667777776643 2333 36666666665554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.19 Score=48.13 Aligned_cols=54 Identities=11% Similarity=0.348 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 004114 449 NGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQF 502 (773)
Q Consensus 449 naLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM 502 (773)
..++..+...|+.++|..+...+.. | +...|-.+|.+|...|+..+|+++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444445555555555544442 2 3444555555555555555555555444
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.11 Score=49.17 Aligned_cols=52 Identities=15% Similarity=0.332 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHH
Q 004114 506 GLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDML 557 (773)
Q Consensus 506 Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y 557 (773)
.+.|+..+..+++.+++..+++..|+++.+...+.|+++.+..+|..|++-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3456666666666666666666666666666666666665656665555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.5 Score=50.38 Aligned_cols=222 Identities=14% Similarity=0.119 Sum_probs=138.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHH-------HH
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNG-------IL 452 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tyna-------LI 452 (773)
.+..+.-+..++..|++-+....+.. -+..-++..-.++...|...++..+-...++.|.+ ...-|+. +-
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 46777777778888888887777654 34444555666677777777666666555555433 1112222 33
Q ss_pred HHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHcCCChHHHH
Q 004114 453 KMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQI-FIGVFSACSALGDVVEGM 531 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~T-y~~LL~a~~~~G~~deA~ 531 (773)
.+|.+.++.+.|+..|.+...+-.. =....+....++++.......- +.|.... .-.=-..+.+.|++..|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHH
Confidence 3666778888888888775422100 1112223344555555544433 2343321 122245567889999999
Q ss_pred HHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 532 LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 532 ~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
+.|.++++. -+-|...|....-+|.+.|.+.+|++=.+.- .+.|+ +.-|--=..++....+++.|.+++....+++
T Consensus 379 ~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 379 KHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998876 2457788999999999999998888765544 33444 3333333444555667888889999999998
Q ss_pred CCCc
Q 004114 610 PSRL 613 (773)
Q Consensus 610 p~~~ 613 (773)
|++.
T Consensus 457 p~~~ 460 (539)
T KOG0548|consen 457 PSNA 460 (539)
T ss_pred chhH
Confidence 8874
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=2.7 Score=40.07 Aligned_cols=220 Identities=20% Similarity=0.182 Sum_probs=153.8
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhCCChHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCIS-VDLPTFSQLMQACGDAKALEEAKAVHEHVERL-LSPLRVSTYNGILKMYSECDSMDDAF 465 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~-Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-G~~pd~~tynaLI~ay~k~G~l~eA~ 465 (773)
.+....+...+..+...... .....+......+...+.+..+...+...... ........+..+...+...+....|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45556666666666554322 13567777778888888888888888877763 33445667777778888888899999
Q ss_pred HHHHHhhc--CC-HhHHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 466 SVFSNMTE--RD-LTSWDTMIT-GFAKNGLGEDAVDIFSQFKQAGLKP----DDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 466 ~lf~~M~~--~d-~~tyn~LI~-ay~~~G~~deAl~Lf~eM~~~Gv~P----d~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
+++..... ++ ...+..... .+...|++++|...|.+... ..| ....+......+...++.+++...+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 99988775 22 233333444 78899999999999999855 333 3344445555567788999999998888
Q ss_pred HHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 538 SKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 538 ~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
.+. ... ....+..+-..+...+.++.|...+... ...|+ ...+..+...+...+..+.+...+....+..|.
T Consensus 194 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 194 LKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred Hhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 654 223 3677788888888999999999998877 44454 445555555555667788888888888777765
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.028 Score=48.66 Aligned_cols=81 Identities=14% Similarity=0.091 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCIS-VDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFS 466 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~-Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~ 466 (773)
.|+++.|+.+|+++.+.... ++...+-.+..++.+.|+.++|..+++. .+.+.. +....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999987431 2444555688889999999999999988 333222 23444456788999999999999
Q ss_pred HHHH
Q 004114 467 VFSN 470 (773)
Q Consensus 467 lf~~ 470 (773)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9976
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.47 Score=46.61 Aligned_cols=75 Identities=11% Similarity=-0.057 Sum_probs=42.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISV--DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYS 456 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~P--d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~ 456 (773)
+...+...|++++|+..|++.......+ ...++..+-.++...|+.++|+..+...++.. +....++..+...|.
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 4455556677777777777766542222 12356666666677777777777777666542 222334444444444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.28 Score=48.23 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD--DQIFIGVFSACSALGDVVEGMLHFESMS 538 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd--~~Ty~~LL~a~~~~G~~deA~~if~~M~ 538 (773)
.|..+...+...|++++|+..|++.......|. ..++..+-.++...|+.++|+..++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555666666666655544321111 2345555555555666666666555543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.11 E-value=3.7 Score=49.10 Aligned_cols=199 Identities=11% Similarity=0.050 Sum_probs=128.0
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH
Q 004114 342 SYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISV-DLP 411 (773)
Q Consensus 342 ~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~P-d~~ 411 (773)
....+..|..+|..|.-+..++|++..+.+.|. ...+..+-..|.-+|.-..|+.+++.-....-.| |..
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 334466789999999999999999999988542 2233346777888888889999987765443224 444
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHh--CC--CCCHHHHHHHHHHHHhCC-----------ChHHHHHHHHHhhc--
Q 004114 412 TFSQLMQACG-DAKALEEAKAVHEHVERL--LS--PLRVSTYNGILKMYSECD-----------SMDDAFSVFSNMTE-- 473 (773)
Q Consensus 412 ty~~LL~a~~-~~g~le~A~~l~~~m~k~--G~--~pd~~tynaLI~ay~k~G-----------~l~eA~~lf~~M~~-- 473 (773)
.+-.+-+.|. +.+.++++...-.++++. +. ......|-.+--+|...- ...+++..+++..+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444554 456677777776666652 11 122344555544554321 23455666666643
Q ss_pred ---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcC
Q 004114 474 ---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYG 542 (773)
Q Consensus 474 ---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~G 542 (773)
|+++-|-+| -|+..++++.|++..++..+.+-.-+...|..|.-.+.-.+++.+|+.+.+.....+|
T Consensus 475 ~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 475 PTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred CCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 344444443 3555677888888888888876666777777777777777888888887776655544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.91 Score=53.25 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHh
Q 004114 405 CISVDLPTFSQLMQACGDA-----KALEEAKAVHEHVERL 439 (773)
Q Consensus 405 Gv~Pd~~ty~~LL~a~~~~-----g~le~A~~l~~~m~k~ 439 (773)
....+...|...+.+.... +.++.|..+|++.++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l 371 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS 371 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 3455667777777765432 2366777777777764
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.097 Score=42.70 Aligned_cols=61 Identities=23% Similarity=0.325 Sum_probs=48.3
Q ss_pred HHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 553 IVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 553 LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
+...+.+.|++++|.++|+.. ...| +...|..+-.++...|++++|..+++.+.++.|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 445678889999999999887 4456 467888888888999999999999999999888763
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.18 Score=47.80 Aligned_cols=54 Identities=19% Similarity=0.445 Sum_probs=42.9
Q ss_pred cCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCC
Q 004114 541 YGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM----PMEPDVDVWEKLMNLCRMHGN 594 (773)
Q Consensus 541 ~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd~~ty~~LI~a~~~~G~ 594 (773)
..+.|+..+..+++.+|+..|++..|+++++.. ++.-+..+|..|+.=+...-+
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 356788888999999999999999999998876 666668899999885544433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.12 Score=54.78 Aligned_cols=111 Identities=15% Similarity=0.185 Sum_probs=87.1
Q ss_pred HHHHHHHHHhh--cCCHhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC---------
Q 004114 462 DDAFSVFSNMT--ERDLTSWDTMITGFAKN-----GLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALG--------- 525 (773)
Q Consensus 462 ~eA~~lf~~M~--~~d~~tyn~LI~ay~~~-----G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G--------- 525 (773)
--.+..|.... ++|-.+|-+++..|... ++++-....++.|.+-|+.-|..+|..||..+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34566777776 77899999999888764 667888888999999999999999999998875543
Q ss_pred -------ChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCH-HHHHHHHHhC
Q 004114 526 -------DVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYL-DEALEFIEKM 573 (773)
Q Consensus 526 -------~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l-~eA~~lf~~M 573 (773)
.-.-++++++.| +.+|+.||.++-..||.++++.+.. .+..++.--|
T Consensus 131 ~F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 234467899999 4569999999999999999998863 3455555444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.95 E-value=6.6 Score=43.80 Aligned_cols=216 Identities=16% Similarity=0.114 Sum_probs=140.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHH
Q 004114 386 VKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAF 465 (773)
Q Consensus 386 ~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~ 465 (773)
.-.|++++|.+-|+-|...- +.-..-...|.-..-+.|+-+.|++.-+..-..-.. -.-.+.++|...|..|+++.|+
T Consensus 131 l~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred HhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHH
Confidence 45799999999999997631 111112333444445778889988887776554322 2336788999999999999999
Q ss_pred HHHHHhh-----cCCHh--HHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHcCCChHHHHHHH
Q 004114 466 SVFSNMT-----ERDLT--SWDTMITGFAK---NGLGEDAVDIFSQFKQAGLKPDDQI-FIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 466 ~lf~~M~-----~~d~~--tyn~LI~ay~~---~G~~deAl~Lf~eM~~~Gv~Pd~~T-y~~LL~a~~~~G~~deA~~if 534 (773)
++.+.-+ ++++. .--.|+.+-+. .-+...|...-.+- ..+.||.+- -..-..++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a--~KL~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA--NKLAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--hhcCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 9998765 34543 22334433222 22344444444333 346777653 344457888999999999999
Q ss_pred HHHHHhcCCCCCcchhhhHHHHHHhCCCHHH--HHH--HHHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 535 ESMSKDYGIVPSMKHYVSIVDMLGSTGYLDE--ALE--FIEKMPMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 535 ~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~e--A~~--lf~~M~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
+.+-+. .|....+ ++-.++|.|+... +.. -++.| +| +...--++..+-...|++..|..-.+.+.++.
T Consensus 287 E~aWK~---ePHP~ia--~lY~~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAWKA---EPHPDIA--LLYVRARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHhc---CCChHHH--HHHHHhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 998664 4544443 4445667776322 222 23344 45 46677777888888999999998899988888
Q ss_pred CCC
Q 004114 610 PSR 612 (773)
Q Consensus 610 p~~ 612 (773)
|..
T Consensus 360 pre 362 (531)
T COG3898 360 PRE 362 (531)
T ss_pred chh
Confidence 875
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.77 Score=48.42 Aligned_cols=122 Identities=11% Similarity=0.071 Sum_probs=52.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH-----HHHh
Q 004114 383 DGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILK-----MYSE 457 (773)
Q Consensus 383 ~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~-----ay~k 457 (773)
..+.-.|.+.-.++++.+..+..-+-+......|++.-.+.|+.+.|...|+...+..-..+-.+.+.++. .|.-
T Consensus 185 ~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg 264 (366)
T KOG2796|consen 185 NCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG 264 (366)
T ss_pred HHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec
Confidence 33333444444445555554443333444444444444455555555555554444322222222222222 1223
Q ss_pred CCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 458 CDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
..+..+|.+.|+++... |.+.-|.-.-+..-.|+..+|++..+.|+.
T Consensus 265 ~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 265 QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455555444422 333333333333334555555555555544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.55 Score=44.13 Aligned_cols=108 Identities=18% Similarity=0.207 Sum_probs=72.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHH
Q 004114 482 MITGFAKNGLGEDAVDIFSQFKQAGLKPD--DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLG 558 (773)
Q Consensus 482 LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd--~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~ 558 (773)
+-.++-..|+.++|+.+|++-...|+... ...+..+-+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34566678999999999999988887655 34677788888899999999999988876531101 1122223345677
Q ss_pred hCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004114 559 STGYLDEALEFIEKMPMEPDVDVWEKLMNLCR 590 (773)
Q Consensus 559 r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~ 590 (773)
..|+.++|++.+-..- .++...|.--|..|+
T Consensus 87 ~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL-AETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 8899999988875431 233335555555544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.69 E-value=2.3 Score=49.83 Aligned_cols=193 Identities=13% Similarity=0.121 Sum_probs=109.2
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004114 339 QYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQ 418 (773)
Q Consensus 339 ~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~ 418 (773)
..+.+.|-.|+... +.+.|+-.|++.+|.++| -++|.-..|+++|.+|+-- .+..
T Consensus 624 ~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklF------------k~~G~enRAlEmyTDlRMF----------D~aQ 678 (1081)
T KOG1538|consen 624 EERKKRGETPNDLL---LADVFAYQGKFHEAAKLF------------KRSGHENRALEMYTDLRMF----------DYAQ 678 (1081)
T ss_pred HHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHH------------HHcCchhhHHHHHHHHHHH----------HHHH
Confidence 34556777777654 445566677777777753 3456666677776665422 1112
Q ss_pred HHHhcCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhCCChHHHHHH-------------HHHhhcCCHhHHHHH
Q 004114 419 ACGDAKALEEAKAVHEHVERL---LSPLRVSTYNGILKMYSECDSMDDAFSV-------------FSNMTERDLTSWDTM 482 (773)
Q Consensus 419 a~~~~g~le~A~~l~~~m~k~---G~~pd~~tynaLI~ay~k~G~l~eA~~l-------------f~~M~~~d~~tyn~L 482 (773)
-+...|.-++-+.+.+.-.+. --+|. +...|+..+|+.++|..+ =.++...+..+.-.+
T Consensus 679 E~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~ 753 (1081)
T KOG1538|consen 679 EFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLC 753 (1081)
T ss_pred HHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHH
Confidence 233344444433333222111 11222 223444445555555544 233323344555555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcch-----------hh
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKH-----------YV 551 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~t-----------yn 551 (773)
..-+-+...+.-|.++|.+|-. ...++......++|++|..+-++..+ +.||+.. |.
T Consensus 754 a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe---~~~dVy~pyaqwLAE~DrFe 821 (1081)
T KOG1538|consen 754 ATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE---FKDDVYMPYAQWLAENDRFE 821 (1081)
T ss_pred HHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc---ccccccchHHHHhhhhhhHH
Confidence 5555666777888888888753 34566677788999999888776632 4455421 22
Q ss_pred hHHHHHHhCCCHHHHHHHHHhC
Q 004114 552 SIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M 573 (773)
---.+|-++|+-.||..+++.+
T Consensus 822 EAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 822 EAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred HHHHHHHHhcchHHHHHHHHHh
Confidence 2335778888888888888887
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.56 Score=51.16 Aligned_cols=194 Identities=11% Similarity=0.097 Sum_probs=120.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH----hcCCHHHHHHHHHHHHHhCCCCCHHH-HHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQA-CG----DAKALEEAKAVHEHVERLLSPLRVST-YNGILKM 454 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a-~~----~~g~le~A~~l~~~m~k~G~~pd~~t-ynaLI~a 454 (773)
||--|.+.+++.+|..+.+++.- ..|-....-.+..+ ++ ....+.-|.+.|...-.++.+-|+.. -.++..+
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred heeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 67778899999999988776521 23333333222222 11 22235667777776666666555332 2345555
Q ss_pred HHhCCChHHHHHHHHHhhc----CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHcCCChHH
Q 004114 455 YSECDSMDDAFSVFSNMTE----RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVF-SACSALGDVVE 529 (773)
Q Consensus 455 y~k~G~l~eA~~lf~~M~~----~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL-~a~~~~G~~de 529 (773)
+.-.-++++++-.+..++. .|+.-+| +..+++..|.+.+|.++|-++....++ |..+|.++| ++|.+.+..+.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH
Confidence 5555677888877777763 3555554 677888899999999999766544333 567775554 56678888988
Q ss_pred HHHHHHHHHHhcCCCCCcchhh-hHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHH
Q 004114 530 GMLHFESMSKDYGIVPSMKHYV-SIVDMLGSTGYLDEALEFIEKM-PMEPDVDVW 582 (773)
Q Consensus 530 A~~if~~M~~~~Gi~Pd~~tyn-~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty 582 (773)
|+.++-.+ .-+.+..+.- .+..-|-+++.+--|-+.|+++ ...|+..-|
T Consensus 447 AW~~~lk~----~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 447 AWDMMLKT----NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred HHHHHHhc----CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence 88877555 2222333322 3345667888887777777776 345665555
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.19 Score=41.19 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=26.9
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 422 DAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 422 ~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
..|++++|.++++.+.+... -+..++-.|..+|.+.|++++|..+++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555556666655555432 244455555566666666666666665554
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.12 Score=42.42 Aligned_cols=61 Identities=21% Similarity=0.283 Sum_probs=33.3
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 004114 523 ALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKL 585 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~L 585 (773)
..|++++|+.+|+.+... .+-+...+..|..+|.+.|++++|.++++.+ ...|+...|..|
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 456666666666665543 1224455556666666666666666666666 334554444333
|
... |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.44 E-value=1.6 Score=53.50 Aligned_cols=186 Identities=15% Similarity=0.150 Sum_probs=100.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHH--HHHHHHhCC
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNG--ILKMYSECD 459 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tyna--LI~ay~k~G 459 (773)
-.-|+..-+...|...|++..+.. .-|......+.+.+++...+++|..+.-..-+. -+.....++- +--.|.+.+
T Consensus 499 G~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG~yyLea~ 576 (1238)
T KOG1127|consen 499 GQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQK-APAFACKENWVQRGPYYLEAH 576 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-chHHHHHhhhhhccccccCcc
Confidence 334444445566666666665542 224456666777777777777777772111111 1111112222 223355666
Q ss_pred ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHcCCChHHHHHHH
Q 004114 460 SMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSA--CSALGDVVEGMLHF 534 (773)
Q Consensus 460 ~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a--~~~~G~~deA~~if 534 (773)
+...|+.-|..... +|...|..+..+|...|++..|+++|.+... ++|+. +|.....| -+..|.+.+|...+
T Consensus 577 n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 577 NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77777777765542 3777788888888888888888888877665 45654 23332222 24567777777777
Q ss_pred HHHHHhcC-----CCCCcchhhhHHHHHHhCCCHHHHHHHHHh
Q 004114 535 ESMSKDYG-----IVPSMKHYVSIVDMLGSTGYLDEALEFIEK 572 (773)
Q Consensus 535 ~~M~~~~G-----i~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~ 572 (773)
..+..... ..--.+++--+...+.-.|-..+|.++|++
T Consensus 654 ~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 654 GLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 66544321 111123333333334444544555555543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.1 Score=50.49 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc-----CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE-----RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIF-IGVFSA 520 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~-----~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty-~~LL~a 520 (773)
+|..+|.+..+..-++.|+.+|-+..+ +++..++++|.-++ .|+..-|..+|+-=.. .-||...| .-.+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHHH
Confidence 344444444444444444444444432 23444444444444 2334444444432111 12333333 233334
Q ss_pred HHcCCChHHHHHHHHHHHHhcCCCCC--cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 004114 521 CSALGDVVEGMLHFESMSKDYGIVPS--MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCR 590 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~~~~Gi~Pd--~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~ 590 (773)
+...++-..|..+|+.-..+ +..+ ...|-.||+-=..-|++..|..+=+.| .+-|-..+-....+-|.
T Consensus 476 Li~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 44455555566666543332 2222 345666666666677776666665555 22333333333344443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.27 E-value=10 Score=41.65 Aligned_cols=192 Identities=13% Similarity=0.155 Sum_probs=125.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHhCCCCCHHHHH-HHHHH
Q 004114 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQ---ACGDAKALEEAKAVHEHVERLLSPLRVSTYN-GILKM 454 (773)
Q Consensus 379 ~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~---a~~~~g~le~A~~l~~~m~k~G~~pd~~tyn-aLI~a 454 (773)
.+|-..+.-.|.+.+|+.-|....+. |+..|-++.+ .|...|.-..|+.=+...++ ++||-..-. ---..
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchh
Confidence 35777888889999999888877654 4445555433 45566766667666666666 456642211 11234
Q ss_pred HHhCCChHHHHHHHHHhhcCCH----------------hHH--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 004114 455 YSECDSMDDAFSVFSNMTERDL----------------TSW--DTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIG 516 (773)
Q Consensus 455 y~k~G~l~eA~~lf~~M~~~d~----------------~ty--n~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~ 516 (773)
+.|.|.++.|+.=|+.+...+. ..| -.++..+.-.|+...|++....+++- ..-|...|..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHH
Confidence 6788999999999988874211 112 23455566678888888888888873 2234555566
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHH
Q 004114 517 VFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVD 580 (773)
Q Consensus 517 LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ 580 (773)
-..+|...|.+..|+.-+....+ +.- +.++.--+-..+-..|+.+.++..+.+- .+.||..
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~ask---Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASK---LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHh---ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 66778888888888765544422 332 3455666777888888888888777665 5566643
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.27 E-value=4.8 Score=48.96 Aligned_cols=185 Identities=16% Similarity=0.125 Sum_probs=119.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChH--
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMD-- 462 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~-- 462 (773)
+.|.|+.++|..+++.....+.. |..|...+-..|-+.+.+++|..+|+..... -|.......+..+|++.+++.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999888887766555 8889999999999999999999999998875 456666777788888877664
Q ss_pred --HHHHHHHHhhcCCHhHHHHHHHHHHHcCCh---------HHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCChHHH
Q 004114 463 --DAFSVFSNMTERDLTSWDTMITGFAKNGLG---------EDAVDIFSQFKQAG-LKPDDQIFIGVFSACSALGDVVEG 530 (773)
Q Consensus 463 --eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~---------deAl~Lf~eM~~~G-v~Pd~~Ty~~LL~a~~~~G~~deA 530 (773)
.|++++...+++--.-|+.|=-.+...... --|...++.|.+.+ -.-+..-.-.-+..+-..|.+++|
T Consensus 130 Qkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 130 QKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 466777766666556666443222222222 23555666665544 111222222223344567889999
Q ss_pred HHHHHH-HHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 531 MLHFES-MSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 531 ~~if~~-M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
.+++.. ..+. -..-+...-+--++.+...+++.+..++-.++
T Consensus 210 l~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 210 LEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 988843 3232 11222233345577888888888776665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.68 Score=45.47 Aligned_cols=87 Identities=11% Similarity=0.099 Sum_probs=55.4
Q ss_pred HHHhCCChHHHHHHHHHhh--cC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHH
Q 004114 454 MYSECDSMDDAFSVFSNMT--ER-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEG 530 (773)
Q Consensus 454 ay~k~G~l~eA~~lf~~M~--~~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA 530 (773)
-+...|++++|+++|+-.. .| +..-|-.|-.++-..|++++|+..|........ -|...+-.+-.++...|+++.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 3445677777777776554 23 445566666677777777777777777666542 2445566666666677777777
Q ss_pred HHHHHHHHHhc
Q 004114 531 MLHFESMSKDY 541 (773)
Q Consensus 531 ~~if~~M~~~~ 541 (773)
++.|+..+...
T Consensus 123 ~~aF~~Ai~~~ 133 (157)
T PRK15363 123 IKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHh
Confidence 77777665543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=3.4 Score=43.62 Aligned_cols=168 Identities=13% Similarity=0.084 Sum_probs=99.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCHHHH---HHHHHHHHhCCChHHHHHHHHHhhc--C--CHhHHHHHHHHHHH--
Q 004114 418 QACGDAKALEEAKAVHEHVERLLSPLRVSTY---NGILKMYSECDSMDDAFSVFSNMTE--R--DLTSWDTMITGFAK-- 488 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~G~~pd~~ty---naLI~ay~k~G~l~eA~~lf~~M~~--~--d~~tyn~LI~ay~~-- 488 (773)
..+...|++++|.+.|+.++..-... .... -.|..+|.+.++.++|...|++..+ | .-+-|-..+.|++.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 33456788999999999888863222 2222 3456777888999999998888764 2 22334444444432
Q ss_pred cC---------------C---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchh
Q 004114 489 NG---------------L---GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHY 550 (773)
Q Consensus 489 ~G---------------~---~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~ty 550 (773)
.+ + ..+|+..|+++++ -|=...-..+|...+..+.... ..+-
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~l-----a~~e 178 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDRL-----AKYE 178 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHHH-----HHHH
Confidence 11 1 1234444444443 3333333444544333332210 0112
Q ss_pred hhHHHHHHhCCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004114 551 VSIVDMLGSTGYLDEALEFIEKM----PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVE 606 (773)
Q Consensus 551 n~LI~~y~r~G~l~eA~~lf~~M----~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~ 606 (773)
-.+...|.+.|.+..|..-|+.+ +-.| .......|+.+|...|..++|..+...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 24566788888888887777776 3222 34566678899999999999988777664
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.95 E-value=1.1 Score=42.86 Aligned_cols=127 Identities=18% Similarity=0.224 Sum_probs=74.2
Q ss_pred CHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHh--C-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHH
Q 004114 409 DLPTFSQLMQA---CGDAKALEEAKAVHEHVERL--L-SPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTM 482 (773)
Q Consensus 409 d~~ty~~LL~a---~~~~g~le~A~~l~~~m~k~--G-~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~L 482 (773)
|...|..++.. ....++.+.+...+..++.. | +-++... ..-+.....-+..+ -..+...+
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~---~~~~~~~l 68 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL---YLDALERL 68 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH---HHHHHHHH
Confidence 44455555433 24556777777777777664 2 1122111 01111112222221 23456677
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH----HhcCCCCCcch
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMS----KDYGIVPSMKH 549 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~----~~~Gi~Pd~~t 549 (773)
+..+...|++++|+.+..++.... .-|...|..+|.++...|+..+|.++|+.+. +++|+.|+..+
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 788888999999999999988753 2356789999999999999999998888764 34688887655
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.2 Score=40.76 Aligned_cols=51 Identities=12% Similarity=0.246 Sum_probs=23.4
Q ss_pred HHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 454 MYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 454 ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
.+.+.|++++|+++|+++.+. +...|..+..++...|++++|+.+|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555544422 333444444445555555555555554443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.69 E-value=8.7 Score=47.41 Aligned_cols=124 Identities=16% Similarity=0.189 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCH---hH--HHHHHHHH
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDL---TS--WDTMITGF 486 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~---~t--yn~LI~ay 486 (773)
.|+.|-.-|+..-+...|...|....+.. .-|...+.++.+.|++...++.|..+.-...+++. .. |--.--.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 44444444444444445555554443321 11334444555555555555555555322222211 11 11122233
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 487 AKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 487 ~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
...+....|+.-|+.-.+... -|...|..|..||...|++..|.++|.+.
T Consensus 573 Lea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 344445555555544443211 13334555555555555555555555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.49 E-value=2.2 Score=45.19 Aligned_cols=164 Identities=13% Similarity=0.029 Sum_probs=112.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhc----------CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTE----------RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGV 517 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~----------~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~L 517 (773)
++.|++.+.-..-+++-+..|+.=.. +-...-++|+..+.-.|.+.-.+.++++.++..-+-+.+....|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 55666666655455555555543222 23345577888888888899999999999997766777888889
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHH-----HHHhCCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHH
Q 004114 518 FSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVD-----MLGSTGYLDEALEFIEKMPME-P-DVDVWEKLMNLCR 590 (773)
Q Consensus 518 L~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~-----~y~r~G~l~eA~~lf~~M~~~-P-d~~ty~~LI~a~~ 590 (773)
.+.-...|+++.|..+|+...+. .-+.+..+.+.++. .|.-+.++.+|...+++.... | |+..-+.=.-+..
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 89889999999999999988765 33445555555543 455677888999999888432 2 3333333333334
Q ss_pred HcCChhHHHHHHHHHHHcCCCC
Q 004114 591 MHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 591 ~~G~~e~A~~~~e~m~el~p~~ 612 (773)
-.|+...|.+..+.+.+..|..
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCcc
Confidence 4678888888888888777754
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.35 E-value=3.4 Score=46.67 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=110.2
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchh-h
Q 004114 474 RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG-LKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHY-V 551 (773)
Q Consensus 474 ~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G-v~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~ty-n 551 (773)
+-..+|.++|..-.+..-++.|..+|-+..+.| +.+++..++++|.-++. |+...|..+|+.=.+.+ ||...| +
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f---~d~~~y~~ 470 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF---PDSTLYKE 470 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC---CCchHHHH
Confidence 456789999999999888999999999999999 67899999999987765 77888999998644442 454444 3
Q ss_pred hHHHHHHhCCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 552 SIVDMLGSTGYLDEALEFIEKM--PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M--~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
-.+.-+.+.++-+.|..+|+.. .+..+ ..+|..+|.-=..-|++..+..+-++|.++-|..
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 5677788999999999999965 23334 5799999999999999999998889999888765
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.26 E-value=3.5 Score=39.07 Aligned_cols=66 Identities=14% Similarity=0.217 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhC-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004114 512 QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST-GYLDEALEFIEKMPMEPDVDVWEKLMNLCR 590 (773)
Q Consensus 512 ~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~-G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~ 590 (773)
.....++..|.+.+.++++..++..+.. |...++.+... ++++.|.+++.+-. +...|..++..+.
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l 136 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL 136 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 3344456666666666666666655411 12233333333 66777777776632 5556766666654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.16 E-value=6.2 Score=40.25 Aligned_cols=59 Identities=22% Similarity=0.144 Sum_probs=33.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCIS--VDLPTFSQLMQACGDAKALEEAKAVHEHVERL 439 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~--Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~ 439 (773)
....+.+.|++.+|++.|+++...-.. --....-.+..++-+.++++.|...++.+++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556677777777777777654211 11223345556666777777777777776665
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.35 Score=51.80 Aligned_cols=89 Identities=16% Similarity=0.186 Sum_probs=63.5
Q ss_pred HcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHH
Q 004114 522 SALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELG 598 (773)
Q Consensus 522 ~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A 598 (773)
.+.+++.+|+..|...++ +.| |.+-|..=..+|.+.|..+.|.+=.+.. .+.|. ..+|..|=.||...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 366777777777776654 445 3444555677788888877777666544 45554 46788888888888888888
Q ss_pred HHHHHHHHHcCCCCc
Q 004114 599 DRCAEIVEQLDPSRL 613 (773)
Q Consensus 599 ~~~~e~m~el~p~~~ 613 (773)
++++++..+++|++.
T Consensus 169 ~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 169 IEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHhhhccCCCcH
Confidence 888888888888875
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.89 E-value=4.8 Score=45.17 Aligned_cols=142 Identities=10% Similarity=-0.001 Sum_probs=75.2
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--cCCChHHHHHHHHHHHHhcCCCCCcchhh---hHH-----
Q 004114 485 GFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACS--ALGDVVEGMLHFESMSKDYGIVPSMKHYV---SIV----- 554 (773)
Q Consensus 485 ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~--~~G~~deA~~if~~M~~~~Gi~Pd~~tyn---~LI----- 554 (773)
++.-.|+.++|...--..++.. + .-.+..++++.+ ..++.+.|..+|.+-. .+.|+...-. .+.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHH
Confidence 4555666666666655554431 1 112333333322 3455666666665442 2334321111 111
Q ss_pred -----HHHHhCCCHHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch-------HH
Q 004114 555 -----DMLGSTGYLDEALEFIEKM-P-----MEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN-------EK 616 (773)
Q Consensus 555 -----~~y~r~G~l~eA~~lf~~M-~-----~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~-------~y 616 (773)
....+.|++.+|.+.+.+. . ++|++..|.....+..+.|+.++|..--+...+++|.-+. .+
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 2335677777777777665 2 3445556666666667777777777777777777766643 33
Q ss_pred HHcCCchhhhhHHHHH
Q 004114 617 SKAGLVPVNASELAKE 632 (773)
Q Consensus 617 ~~aG~~~~~v~~lmk~ 632 (773)
...+.|...|++.-+.
T Consensus 332 l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555544433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.21 Score=41.12 Aligned_cols=63 Identities=22% Similarity=0.328 Sum_probs=43.8
Q ss_pred chhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCC
Q 004114 548 KHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHG-NLELGDRCAEIVEQLDP 610 (773)
Q Consensus 548 ~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G-~~e~A~~~~e~m~el~p 610 (773)
.+|..+-..+...|++++|...|++. .+.| +...|..+-.++...| ++++|...++...+++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566666777777777777777665 3334 3566777777777777 67788888877777766
|
... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.63 E-value=4.9 Score=48.19 Aligned_cols=148 Identities=9% Similarity=0.158 Sum_probs=83.3
Q ss_pred cCCCCccHHHHHHHHhhchHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHhhhh---cc---HHHHHHHHHH
Q 004114 317 QNGGQYQWDQSRRQYQQNPNEGQYQSYSGNIQ---NGMMASQVLNNCKHEDDFAEASRSSQN---NG---TLEQLDGLVK 387 (773)
Q Consensus 317 ~~~~~~~w~~a~~~f~~~~~~~~~m~~~gl~p---d~~~~n~LI~~y~k~g~~~~A~~v~~~---~~---~~~LI~a~~~ 387 (773)
....-++|....+.|+.+.++..+. .|..| -..++...|+.+.-.|+.++|-.+..- +. +...+..++.
T Consensus 358 ~~~Dhi~Wll~~k~yeeAl~~~k~~--~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 358 DQEDHIDWLLEKKKYEEALDAAKAS--IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAE 435 (846)
T ss_pred CcchhHHHHHHhhHHHHHHHHHHhc--cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcc
Confidence 3366789999999999988887754 34444 456888999999999999999884110 00 0002222223
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------------------CCCCCHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL--------------------LSPLRVST 447 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~--------------------G~~pd~~t 447 (773)
.++......+ |....-+.+..+|..+|..+.. -+ ...+++..... .-++ ...
T Consensus 436 ~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~---~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~-~~L 507 (846)
T KOG2066|consen 436 LDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SD---VKGFLELIKEWPGHLYSVLTIISATEPQIKQNSES-TAL 507 (846)
T ss_pred ccccchhhcc---CCCCCcccCchHHHHHHHHHHH-HH---HHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccc-hhH
Confidence 3322221111 1111112355677777777765 21 12222221111 1111 223
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcC
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTER 474 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~~ 474 (773)
--.|+..|...+++.+|..++-..+.+
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQDK 534 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhccCh
Confidence 344888888889999998887766544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.59 E-value=1.3 Score=47.59 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=76.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHH
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAV 496 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl 496 (773)
..+.+++++|...|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+....- -..+|..|-.+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 457788899999998888853 336677777788899999998888887776643 3467888889999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH
Q 004114 497 DIFSQFKQAGLKPDDQIFIGVFS 519 (773)
Q Consensus 497 ~Lf~eM~~~Gv~Pd~~Ty~~LL~ 519 (773)
+.|++-++ +.|+-.+|-.=|.
T Consensus 170 ~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHhhhc--cCCCcHHHHHHHH
Confidence 99988776 6788887755443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.47 E-value=19 Score=41.13 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 579 VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 579 ~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
+.++..++..+.+.++.++|...+.++.-++|...
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~s 332 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRIS 332 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcch
Confidence 56889999999999999999999999999998873
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.35 E-value=2.9 Score=48.06 Aligned_cols=196 Identities=16% Similarity=0.134 Sum_probs=132.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCH---h-------HHHHH
Q 004114 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDL---T-------SWDTM 482 (773)
Q Consensus 413 y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~---~-------tyn~L 482 (773)
..-|.++.-+..+++.|.+-+...+... -++.-++..-.+|...|...+.+..-+.-.+..- . +...+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445566666677888888888877764 4555667777788888887777666655443311 1 12224
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCc--chhhhHHHHHHhC
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSM--KHYVSIVDMLGST 560 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~--~tyn~LI~~y~r~ 560 (773)
-.+|.+.++++.|+..|.+-+..-..||..+ +....+++....+... -+.|.. ..... -..+.+.
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~k-Gne~Fk~ 371 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREK-GNEAFKK 371 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHH-HHHHHhc
Confidence 4467777889999999998776655555432 2223344444433331 122332 11111 3456789
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcCCch
Q 004114 561 GYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLVP 623 (773)
Q Consensus 561 G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG~~~ 623 (773)
|++.+|...+.++ ...| |...|....-+|.+.|.+..|..-.+...+++|.....|.+.|...
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAAL 436 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 9999999999988 3345 5788999999999999999999999999999999998888887654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.22 E-value=5 Score=37.98 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=18.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGD 422 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~ 422 (773)
+|..+.+.+....++.+++.+...+. .+...++.+|..+++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 44444444445555555544444431 333344444444443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=92.10 E-value=11 Score=38.34 Aligned_cols=168 Identities=12% Similarity=0.118 Sum_probs=94.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--CC--HhHHHHHHHHHHHcCC
Q 004114 418 QACGDAKALEEAKAVHEHVERLLS--PLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--RD--LTSWDTMITGFAKNGL 491 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~G~--~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~d--~~tyn~LI~ay~~~G~ 491 (773)
..+...|++++|...|+.++..-. +--....-.++.+|-+.|+.++|...|++..+ |+ .+.+-..+.|.+....
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 345678899999999999988722 22234556678889999999999999998763 22 2233333333322111
Q ss_pred hHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHH
Q 004114 492 GEDAVDIFSQFKQAGLKPD-------DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564 (773)
Q Consensus 492 ~deAl~Lf~eM~~~Gv~Pd-------~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~ 564 (773)
....+ ....| ..+|..+|.-+=......+|...+..+.... ..+--.+.+.|.+.|.+.
T Consensus 93 ~~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l-----a~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 93 IPGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL-----AEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCTT-HH
T ss_pred Cccch---------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcccHH
Confidence 11110 00111 1245555555556666666665554443320 112224667788899988
Q ss_pred HHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChhHHH
Q 004114 565 EALEFIEKM----PMEPD-VDVWEKLMNLCRMHGNLELGD 599 (773)
Q Consensus 565 eA~~lf~~M----~~~Pd-~~ty~~LI~a~~~~G~~e~A~ 599 (773)
.|..-++.+ +-.+. ....-.|+.++.+.|..+.|.
T Consensus 159 aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 888877776 22221 345667788888888776443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.07 E-value=15 Score=37.26 Aligned_cols=126 Identities=14% Similarity=0.132 Sum_probs=89.7
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhH
Q 004114 474 RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSI 553 (773)
Q Consensus 474 ~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~L 553 (773)
|++..--.|..++...|+..||...|.+-..--+.-|......+..+....++...|...++.+.+...---+..+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 56666677888999999999999999988765556677888888899999999999998888875542111124455567
Q ss_pred HHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHH
Q 004114 554 VDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGD 599 (773)
Q Consensus 554 I~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~ 599 (773)
...|...|+.+.|+.-|+.. ..-|+...-...-..+.+.|+.++|.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHH
Confidence 78888899999888888866 44455433223333445677666663
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.93 E-value=12 Score=44.58 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=37.3
Q ss_pred chhhhHHHHHHhCCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 548 KHYVSIVDMLGSTGYLDEALEFIEKM----PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 548 ~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
.+|-.|..--...|+++.|+..--.+ .+-|-+.+|..|.-+-|....+....+++-+++..
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 34445555566778888887765444 35567778877766656555555555555554443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.53 Score=39.77 Aligned_cols=24 Identities=25% Similarity=0.628 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSN 470 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~ 470 (773)
+++.|-.+|.+.|++++|+..|++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444444444444443
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.88 E-value=10 Score=45.51 Aligned_cols=99 Identities=19% Similarity=0.189 Sum_probs=47.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCC
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGY 562 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~ 562 (773)
|.-+...|...+|.++-.+.+ -||-.-|-.=+.+++..+++++-+++-.+++. +.-|.-.+.+|.+.|+
T Consensus 691 v~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVEACLKQGN 759 (829)
T ss_pred HHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHHHhccc
Confidence 344444555555555544433 24555555555555555555554444333311 2334445555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 004114 563 LDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELG 598 (773)
Q Consensus 563 l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A 598 (773)
.+||.+.+-+.+-.+ -...+|.+.|++.+|
T Consensus 760 ~~EA~KYiprv~~l~------ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 760 KDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEA 789 (829)
T ss_pred HHHHhhhhhccCChH------HHHHHHHHhccHHHH
Confidence 555555555542111 234445555554444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.47 Score=39.41 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=44.6
Q ss_pred HHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch
Q 004114 555 DMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN 614 (773)
Q Consensus 555 ~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~ 614 (773)
.+|.+.+++++|.++++.+ .+.| +...|...-..+...|+++.|...++.+.+..|++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4677788888888888877 3444 4566666777778888888888888888888887643
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=1.6 Score=46.71 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=12.0
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 588 LCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 588 a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
.+...|+.+.|..+++.+.+..|+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3344455555555555554444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.46 E-value=13 Score=40.47 Aligned_cols=125 Identities=16% Similarity=0.254 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh--CC----ChHHHHHHHHHhhcC-------CHhHHHHHHHHHHHcCC-
Q 004114 426 LEEAKAVHEHVERLLSPLRVSTYNGILKMYSE--CD----SMDDAFSVFSNMTER-------DLTSWDTMITGFAKNGL- 491 (773)
Q Consensus 426 le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k--~G----~l~eA~~lf~~M~~~-------d~~tyn~LI~ay~~~G~- 491 (773)
++..+.+++.|++.|+.-+..+|-+..-.... .. .+..|..+|+.|++. +-.++.+|+.. ....
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566666677777666665555443222222 11 245667777777642 44555555544 2222
Q ss_pred ---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCC---hHHHHHHHHHHHHhcCCCCCcchhhhH
Q 004114 492 ---GEDAVDIFSQFKQAGLKPDD-QIFIGVFSACSALGD---VVEGMLHFESMSKDYGIVPSMKHYVSI 553 (773)
Q Consensus 492 ---~deAl~Lf~eM~~~Gv~Pd~-~Ty~~LL~a~~~~G~---~deA~~if~~M~~~~Gi~Pd~~tyn~L 553 (773)
.+++...|+.+...|+...- .-+.+-|-+++..-. +..+..+++.+.+. |+++...+|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHH
Confidence 35667777777777775543 233333333333222 33566777777665 887777776543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.41 E-value=18 Score=36.76 Aligned_cols=120 Identities=15% Similarity=0.121 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhc----CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHH
Q 004114 443 LRVSTYNGILKMYSECDSMDDAFSVFSNMTE----RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG---LKPDDQIFI 515 (773)
Q Consensus 443 pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~----~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G---v~Pd~~Ty~ 515 (773)
|++.---.|..++.+.|+..+|...|.+... .|....-.+..+....+++.+|..+++++.+.. -.||. ..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hH
Confidence 4444344444445555555555555544432 244444444444444555555555555554432 22332 23
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHH
Q 004114 516 GVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEAL 567 (773)
Q Consensus 516 ~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~ 567 (773)
.+-.++.-.|...+|+..|+.... ..|+...-.-.-.++++.|+.++|.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHH
Confidence 334445555555555555554432 2344433333444555555555544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.38 E-value=12 Score=43.40 Aligned_cols=125 Identities=14% Similarity=0.076 Sum_probs=83.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC-----HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCHHHH
Q 004114 379 LEQLDGLVKEGKVKEAIEVLGLLEKQC-ISVD-----LPTFSQLMQACGD----AKALEEAKAVHEHVERLLSPLRVSTY 448 (773)
Q Consensus 379 ~~LI~a~~~~G~~~eAl~lf~~M~~~G-v~Pd-----~~ty~~LL~a~~~----~g~le~A~~l~~~m~k~G~~pd~~ty 448 (773)
..++....=.|+-+.+++++.+-.+.+ +.-. ..+|..++..++. ...++.|.+++..+.++ -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 347777777889999998888765532 3221 1234444444443 45688899999998886 4566555
Q ss_pred HHH-HHHHHhCCChHHHHHHHHHhhcC-------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 449 NGI-LKMYSECDSMDDAFSVFSNMTER-------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 449 naL-I~ay~k~G~l~eA~~lf~~M~~~-------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
.-. -+.+...|++++|++.|++.... ....+--+.-++.-..++++|.+.|.++.+.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 443 36677789999999999875531 2233334555577778888888888888874
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=91.05 E-value=2.9 Score=44.67 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=74.3
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-cchh
Q 004114 476 LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD----QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS-MKHY 550 (773)
Q Consensus 476 ~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~----~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-~~ty 550 (773)
...|...+..+.+.|++++|+..|+.+.+.- |+. ..+-.+-.++...|++++|...|..+.+.+.-.|. ...+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 3457776666677899999999999999853 554 46778888999999999999999999876433222 3344
Q ss_pred hhHHHHHHhCCCHHHHHHHHHhC
Q 004114 551 VSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 551 n~LI~~y~r~G~l~eA~~lf~~M 573 (773)
-.+...+...|+.++|.++|+.+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566777899999999999876
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.93 Score=37.17 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
+|..+-..+...|++++|+..|.+..+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444444433
|
... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.82 E-value=6.5 Score=42.86 Aligned_cols=135 Identities=9% Similarity=0.151 Sum_probs=88.8
Q ss_pred HHHHHHHcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHhCC---CCCHH
Q 004114 381 QLDGLVKEGK-----VKEAIEVLGLLEKQCISVDLPTFSQLMQACGD--AK----ALEEAKAVHEHVERLLS---PLRVS 446 (773)
Q Consensus 381 LI~a~~~~G~-----~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~--~g----~le~A~~l~~~m~k~G~---~pd~~ 446 (773)
+...++-.+. +++.+++++.|.+.|++-+..+|-+.+-.... .. ....|+++|+.|++... .++..
T Consensus 63 la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~ 142 (297)
T PF13170_consen 63 LAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDY 142 (297)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccch
Confidence 4445555555 56677889999999999998888765444433 22 36789999999999742 34556
Q ss_pred HHHHHHHHHHhCCC----hHHHHHHHHHhhc-----CCHhHHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCCHHHH
Q 004114 447 TYNGILKMYSECDS----MDDAFSVFSNMTE-----RDLTSWDTMITGFAKNGL---GEDAVDIFSQFKQAGLKPDDQIF 514 (773)
Q Consensus 447 tynaLI~ay~k~G~----l~eA~~lf~~M~~-----~d~~tyn~LI~ay~~~G~---~deAl~Lf~eM~~~Gv~Pd~~Ty 514 (773)
++.+||.+ ...+ ++.++.+|+.+.+ -+..-+.+-|-+++.... ...+.++++.+.+.|+++-...|
T Consensus 143 ~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~y 220 (297)
T PF13170_consen 143 PFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHY 220 (297)
T ss_pred hHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccc
Confidence 77777655 3333 3556666666654 244444444444443322 45789999999999999887766
Q ss_pred HHH
Q 004114 515 IGV 517 (773)
Q Consensus 515 ~~L 517 (773)
..+
T Consensus 221 p~l 223 (297)
T PF13170_consen 221 PTL 223 (297)
T ss_pred cHH
Confidence 544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.62 E-value=4.4 Score=47.95 Aligned_cols=181 Identities=14% Similarity=0.088 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCC--------CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHh
Q 004114 407 SVDLPTFSQLMQACGDAKALEEAKAVHEHVERL-LSPL--------RVSTYNGILKMYSECDSMDDAFSVFSNMTERDLT 477 (773)
Q Consensus 407 ~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-G~~p--------d~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~ 477 (773)
.|.+..|..|..+....-.++.|...|-..... |++. +...-.+=|.+| -|++++|++++-+|..+|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 577778887777776767788887777554432 3321 111112223333 37899999999998887753
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH----------------HHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH------H
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQ----------------FKQAGLKPDDQIFIGVFSACSALGDVVEGMLHF------E 535 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~e----------------M~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if------~ 535 (773)
|..+.+.|++-....|++. |-+. -.+...|-.....|...|+.+.-.+.+ +
T Consensus 767 -----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~ 839 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYYSYCGDTENQIECLYRLELFG 839 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhh
Confidence 3444445555444444321 1100 001112333333444444433222211 1
Q ss_pred HHHH-hcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 004114 536 SMSK-DYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCA 602 (773)
Q Consensus 536 ~M~~-~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~ 602 (773)
.+.. ...++-+....-.|.+++.+.|.-++|.+.+-+-+ .|. +.+.+|....++.+|.+++
T Consensus 840 ~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~pk-----aAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 840 ELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LPK-----AAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred hHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc-CcH-----HHHHHHHHHHHHHHHHHHH
Confidence 1110 00244456666778888999999888888887664 232 3345555555555554443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.51 E-value=5.1 Score=46.15 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCCh
Q 004114 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLG 492 (773)
Q Consensus 413 y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~ 492 (773)
...+++-+-+.|..+.|+++-..- ..-.+...++|+++.|.++-++.. +...|..|-....+.|++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 445555555555555555543221 112333445555555555544433 444566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHh
Q 004114 493 EDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEK 572 (773)
Q Consensus 493 deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~ 572 (773)
+.|.+.|.+... |..|+--|.-.|+.+.-.++.+..... | -++....++.-.|++++..+++.+
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666555554321 344444444455554444433332222 1 133333444444555555555554
Q ss_pred CC
Q 004114 573 MP 574 (773)
Q Consensus 573 M~ 574 (773)
-+
T Consensus 428 ~~ 429 (443)
T PF04053_consen 428 TG 429 (443)
T ss_dssp TT
T ss_pred cC
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.38 E-value=20 Score=38.05 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=45.5
Q ss_pred HHHHHHhCCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 553 IVDMLGSTGYLDEALEFIEKM----PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 553 LI~~y~r~G~l~eA~~lf~~M----~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
+..-|.+.|.+..|..-+++| +-.+ -....-.|..+|...|-.++|.++.+.+..-.|+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 445678888888888888777 1111 234566678899999999999999999888777663
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=90.14 E-value=28 Score=39.14 Aligned_cols=181 Identities=14% Similarity=0.048 Sum_probs=92.1
Q ss_pred hhccHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCCHHH
Q 004114 374 QNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQC---ISVDLPTFSQLMQACGD---AKALEEAKAVHEHVERLLSPLRVST 447 (773)
Q Consensus 374 ~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~G---v~Pd~~ty~~LL~a~~~---~g~le~A~~l~~~m~k~G~~pd~~t 447 (773)
+......|+-.|....+++..+++.+.|...- +.-....--...-|+-+ .|+.++|++++..++...-.++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 33444456667777777777777777776541 11011111122223344 6777778877777555544556655
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHcC
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQI---FIGVFSACSAL 524 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~T---y~~LL~a~~~~ 524 (773)
|..+-..|-. +|.+....|..+ .++|++.|.+--+ +.||..+ +.+|+....+.
T Consensus 220 ~gL~GRIyKD---------~~~~s~~~d~~~-------------ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 220 LGLLGRIYKD---------LFLESNFTDRES-------------LDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHD 275 (374)
T ss_pred HHHHHHHHHH---------HHHHcCccchHH-------------HHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCc
Confidence 5555444432 122111112222 5566666655433 2344432 23333333221
Q ss_pred C-ChHHHHHHH---HHHHHhcCC---CCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC
Q 004114 525 G-DVVEGMLHF---ESMSKDYGI---VPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD 578 (773)
Q Consensus 525 G-~~deA~~if---~~M~~~~Gi---~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd 578 (773)
- .-.+..++- ..+..+.|. ..+-..+..++++..-.|+.++|.+..+.| ...|.
T Consensus 276 ~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 276 FETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 1 111222222 111111122 234566778899999999999999999998 43443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.74 Score=38.83 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQA--GLK---PD-DQIFIGVFSACSALGDVVEGMLHFESMS 538 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~--Gv~---Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~ 538 (773)
.+|+.|-..|...|++++|+..|++..+. -.. |+ ..++..+-.++...|++++|+.++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888887643 111 22 3466777777778888888887776653
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=89.56 E-value=6.7 Score=44.82 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhh--cCCH----hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 443 LRVSTYNGILKMYSECDSMDDAFSVFSNMT--ERDL----TSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 443 pd~~tynaLI~ay~k~G~l~eA~~lf~~M~--~~d~----~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
.+...++.+-.+|.+.|++++|+..|++.. .|+. .+|..+..+|+..|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346778888888888888888888888765 3432 35888888888888888888888888774
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.48 E-value=20 Score=43.58 Aligned_cols=177 Identities=15% Similarity=0.138 Sum_probs=114.7
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004114 376 NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACG----DAKALEEAKAVHEHVERLLSPLRVSTYNGI 451 (773)
Q Consensus 376 ~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~----~~g~le~A~~l~~~m~k~G~~pd~~tynaL 451 (773)
..+..-|..+++...++-|+.+-+. . ..|..+...++..|+ +.|++++|..-|-+.+.. ++| ..+
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~---~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V 403 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKS---Q--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV 403 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHh---c--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence 3344578888888888888877433 2 345666666666665 568899998877665543 222 235
Q ss_pred HHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH
Q 004114 452 LKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVV 528 (773)
Q Consensus 452 I~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~d 528 (773)
|.-|.+..++..-..+++.+.+. +...-+.||.+|.+.++.++-.++.+.-. .|..- .-+-..+..|.+.+-++
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYLD 480 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChHH
Confidence 56666666666666777776654 44556788999999999988877776544 33211 12345567777888888
Q ss_pred HHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCC
Q 004114 529 EGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPM 575 (773)
Q Consensus 529 eA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~ 575 (773)
+|..+-... +. .. ..|--.+-..+++++|++.+..||+
T Consensus 481 ~a~~LA~k~----~~--he---~vl~ille~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 481 EAELLATKF----KK--HE---WVLDILLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHHHh----cc--CH---HHHHHHHHHhcCHHHHHHHHhcCCH
Confidence 887765433 22 11 2233344567889999999998863
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=89.44 E-value=27 Score=40.40 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=26.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL 439 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~ 439 (773)
+|.---+..+...-+++=.+.++. .||..+.-+|| |--....+.+|++++++.++.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA 229 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKA 229 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH
Confidence 455555555555555555554442 34433222221 111233456666666665554
|
The molecular function of this protein is uncertain. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.07 E-value=36 Score=36.54 Aligned_cols=101 Identities=11% Similarity=0.093 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHH
Q 004114 411 PTFSQLMQACGDAKA---LEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMIT 484 (773)
Q Consensus 411 ~ty~~LL~a~~~~g~---le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ 484 (773)
.++..|+.++...+. .++|..+.+.+.+.... ...++-.-|+.+.+.++.+++.+++.+|... ....+..++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 356667777766665 45566677777554222 3445555677777789999999999998843 3456666666
Q ss_pred HHHH--cCChHHHHHHHHHHHHCCCCCCHH
Q 004114 485 GFAK--NGLGEDAVDIFSQFKQAGLKPDDQ 512 (773)
Q Consensus 485 ay~~--~G~~deAl~Lf~eM~~~Gv~Pd~~ 512 (773)
.+-. ......|...++.+....+.|...
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 6622 233467777777777766666653
|
It is also involved in sporulation []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.00 E-value=1.7 Score=35.91 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=24.7
Q ss_pred HHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 454 MYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 454 ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
+|.+.+++++|+++++.+.. | +...|...-.+|.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444555555555554442 1 334444444555555555555555555544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.98 E-value=5.8 Score=47.98 Aligned_cols=140 Identities=11% Similarity=0.074 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCChhHHHHhhh-----hccHHHHHHH----HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004114 354 SQVLNNCKHEDDFAEASRSSQ-----NNGTLEQLDG----LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAK 424 (773)
Q Consensus 354 n~LI~~y~k~g~~~~A~~v~~-----~~~~~~LI~a----~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g 424 (773)
..-|++..+....+.|..+.. .....++... +.+.|++++|..-|-+-... +.|. .+|.-+..+.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 344555555556666655421 1122223333 33567777776666554332 2222 2344444444
Q ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHh--HHHHHHHHHHHcCChHHHHHHHHH
Q 004114 425 ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLT--SWDTMITGFAKNGLGEDAVDIFSQ 501 (773)
Q Consensus 425 ~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~--tyn~LI~ay~~~G~~deAl~Lf~e 501 (773)
.+..-...++.+.+.|+. +...-+.||.+|.|.++.+.-.++.+... .... -....+..+.+.+-.++|..|-.+
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 555555556666666655 33344566777777776666666555544 1111 133444555555555555554443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.80 E-value=21 Score=33.67 Aligned_cols=187 Identities=20% Similarity=0.157 Sum_probs=135.0
Q ss_pred cCCHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-----CCHhHHHHHHHHHHHcCChHHHH
Q 004114 423 AKALEEAKAVHEHVERLLSP-LRVSTYNGILKMYSECDSMDDAFSVFSNMTE-----RDLTSWDTMITGFAKNGLGEDAV 496 (773)
Q Consensus 423 ~g~le~A~~l~~~m~k~G~~-pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~-----~d~~tyn~LI~ay~~~G~~deAl 496 (773)
.+....+...+..+...... .....+..+...+...+.+..+...+..... .....+..+...+...+...+|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45566666666666554322 1356788888999999999999999887652 35567777888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHcCCChHHHHHHHHHHHHhcCC--CCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 497 DIFSQFKQAGLKPDDQIFIGVFS-ACSALGDVVEGMLHFESMSKDYGI--VPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 497 ~Lf~eM~~~Gv~Pd~~Ty~~LL~-a~~~~G~~deA~~if~~M~~~~Gi--~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+++.........+.. ....... ++...|+++.|...+...... .- ......+......+...++.++|...+..+
T Consensus 116 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPDL-AEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 999998876544422 2222222 788999999999999987432 21 122334444445567789999999999887
Q ss_pred -CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 574 -PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 574 -~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
...++ ...+..+-..+...++++.|...+....+..|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 33344 677888888888889899999999888888776
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.60 E-value=2.3 Score=45.46 Aligned_cols=85 Identities=13% Similarity=0.086 Sum_probs=66.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------CHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAK----------------ALEEAKAVHEHVERLLSPLRVSTYNGI 451 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g----------------~le~A~~l~~~m~k~G~~pd~~tynaL 451 (773)
.++++=....++.|.+.|+.-|..+|..||..+-+.. .-+-+..++++|...|+.||-.+-..|
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL 164 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 4556666667899999999999999999999876643 235688899999999999999999999
Q ss_pred HHHHHhCCC-hHHHHHHHHHhh
Q 004114 452 LKMYSECDS-MDDAFSVFSNMT 472 (773)
Q Consensus 452 I~ay~k~G~-l~eA~~lf~~M~ 472 (773)
|.++++.+- +.+..++.--|+
T Consensus 165 vn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 165 VNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHhccccccHHHHHHHHHhhh
Confidence 999988774 345555555554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=87.91 E-value=5.2 Score=45.64 Aligned_cols=63 Identities=11% Similarity=-0.041 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHhhc
Q 004114 409 DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRV----STYNGILKMYSECDSMDDAFSVFSNMTE 473 (773)
Q Consensus 409 d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~----~tynaLI~ay~k~G~l~eA~~lf~~M~~ 473 (773)
+...+..+-.+|...|++++|...|+..++. .|+. .+|..+..+|++.|++++|+..|++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445666666666666666666666666554 2332 2466666666666666666666665554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.72 E-value=31 Score=34.35 Aligned_cols=121 Identities=18% Similarity=0.156 Sum_probs=75.1
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHH
Q 004114 475 DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIV 554 (773)
Q Consensus 475 d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI 554 (773)
....|..+|..+.+.|++. .+..+...++-||.......+-.+.. ....+.++--.|.++.+ ..+..++
T Consensus 28 ~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~-----~~~~~ii 96 (167)
T PF07035_consen 28 QHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLG-----TAYEEII 96 (167)
T ss_pred CHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-----hhHHHHH
Confidence 4445555566666666533 35556667788888777766654443 23344444444544422 1466788
Q ss_pred HHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 555 DMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 555 ~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
+.+...|++-+|.++....+. -+......++.|-...++...--.+++.+.+
T Consensus 97 evLL~~g~vl~ALr~ar~~~~-~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 97 EVLLSKGQVLEALRYARQYHK-VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHhCCCHHHHHHHHHHcCC-cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 899999999999999988631 2223335678887777776655566666654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.67 E-value=3.8 Score=44.09 Aligned_cols=75 Identities=15% Similarity=0.283 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 004114 446 STYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQ-----AGLKPDDQIFIGV 517 (773)
Q Consensus 446 ~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~-----~Gv~Pd~~Ty~~L 517 (773)
.++..++..+..+|+.+.+.+.++++... +...|..||.+|.+.|+...|+..|+.|.. .|+.|-..+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 46677788888888888888888877643 667888888888888888888888887765 4777777666555
Q ss_pred HHH
Q 004114 518 FSA 520 (773)
Q Consensus 518 L~a 520 (773)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.60 E-value=17 Score=41.92 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=43.9
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHH
Q 004114 421 GDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFS 500 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~ 500 (773)
.+.|+++.|.++..++ .+...|..|-+...+.|+++-|++.|.+.. -|..|+--|.-.|+.++-.++.+
T Consensus 329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHH
Confidence 3445555554443221 244455555555555555555555555543 24444444555555554444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 004114 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFE 535 (773)
Q Consensus 501 eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~ 535 (773)
.-...|- ++..+.++.-.|++++..+++.
T Consensus 398 ~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 398 IAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 4443331 3333333334455555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=87.27 E-value=25 Score=40.81 Aligned_cols=158 Identities=13% Similarity=0.049 Sum_probs=101.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-H
Q 004114 344 SGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVK----EGKVKEAIEVLGLLEKQCISVDLPTFSQLM-Q 418 (773)
Q Consensus 344 ~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~----~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL-~ 418 (773)
.|+.-|-...-.++....+.+.+..+...+.-..+..++..++. ....+.|.+++..+.+. -|+...|...- +
T Consensus 198 vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR 275 (468)
T PF10300_consen 198 VGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGR 275 (468)
T ss_pred cCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 45666666666666666666666665553333333334444443 56788999999999886 67776664433 3
Q ss_pred HHHhcCCHHHHHHHHHHHHHhC--C-CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHH-HHHHcCC
Q 004114 419 ACGDAKALEEAKAVHEHVERLL--S-PLRVSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMIT-GFAKNGL 491 (773)
Q Consensus 419 a~~~~g~le~A~~l~~~m~k~G--~-~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~-ay~~~G~ 491 (773)
.+...|++++|.+.++...... . +.....+--+.-.+.-..++++|...|..+.+. .-..|.-+.. +|...|+
T Consensus 276 ~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 276 LERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR 355 (468)
T ss_pred HHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence 4557799999999999766421 1 122334445666678889999999999999853 2233333332 3344676
Q ss_pred h-------HHHHHHHHHHH
Q 004114 492 G-------EDAVDIFSQFK 503 (773)
Q Consensus 492 ~-------deAl~Lf~eM~ 503 (773)
. ++|.++|.+..
T Consensus 356 ~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 356 EEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred chhhhhhHHHHHHHHHHHH
Confidence 6 77788877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.75 E-value=1.7 Score=32.83 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHH
Q 004114 580 DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSK 618 (773)
Q Consensus 580 ~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~ 618 (773)
.+|..|-.+|...|++++|+++++.+.+..|+++.+...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 357778888999999999999999999999988655443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.73 E-value=50 Score=35.62 Aligned_cols=141 Identities=11% Similarity=0.041 Sum_probs=60.7
Q ss_pred HHHHHHHcCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHhCCCCCHHHHHHHHHH
Q 004114 381 QLDGLVKEGKV----KEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEE--AKAVHEHVERLLSPLRVSTYNGILKM 454 (773)
Q Consensus 381 LI~a~~~~G~~----~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~--A~~l~~~m~k~G~~pd~~tynaLI~a 454 (773)
.+.++++-|+. .+++.++..+... .+|..+-...+.+++..+.-.. ..++...+...-..++..+--..+.+
T Consensus 74 A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~a 151 (280)
T PRK09687 74 GADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFA 151 (280)
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 45555555542 3455555555332 3455555555555554432110 01112222221122344444555555
Q ss_pred HHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 455 YSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNG-LGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 455 y~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G-~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
+++.++.+....+..-+..+|...-...+.++.+.+ ....+...+..+.. .++...-...+.++++.++
T Consensus 152 Lg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 152 LSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC
Confidence 555555332222233333444444444444444432 12344444444442 2344444555555555555
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.67 E-value=58 Score=35.36 Aligned_cols=121 Identities=10% Similarity=0.146 Sum_probs=76.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC----CHhHHHHHHHHHHHcCChH
Q 004114 418 QACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER----DLTSWDTMITGFAKNGLGE 493 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~----d~~tyn~LI~ay~~~G~~d 493 (773)
......+++.+|..+|......--. +...--.|..+|...|+.+.|..+++.++.. ....-.+-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456788899999999888876433 3445667889999999999999999998743 1122222344445555555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHH-HHHhcC
Q 004114 494 DAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFES-MSKDYG 542 (773)
Q Consensus 494 eAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~-M~~~~G 542 (773)
+...+-.+.-. .| |...=..|-..+...|+.++|.+.+-. |+++.|
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 44444444433 35 444445566677777888888755544 444333
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=85.20 E-value=16 Score=36.27 Aligned_cols=116 Identities=11% Similarity=0.023 Sum_probs=69.2
Q ss_pred HHHHHHHhcCChhHHHHhhhhccH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004114 355 QVLNNCKHEDDFAEASRSSQNNGT---LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKA 431 (773)
Q Consensus 355 ~LI~~y~k~g~~~~A~~v~~~~~~---~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~ 431 (773)
.+..+...-+-+.+...+ +...+ -..-..+-..|++++|..+|.-+...+.- +..-+..|-.+|-..+.+++|..
T Consensus 15 ~i~~al~~G~tlk~l~gi-s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~ 92 (165)
T PRK15331 15 MIWDAVSEGATLKDVHGI-PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACD 92 (165)
T ss_pred HHHHHHHCCCCHHHHhCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455544455544443 11111 12445556788888888888887765322 33334444444446678888888
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc
Q 004114 432 VHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE 473 (773)
Q Consensus 432 l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~ 473 (773)
+|........ -|...+--+-.+|...|+.+.|+..|....+
T Consensus 93 ~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 93 LYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 8877666543 2333334456677788888888888877654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.16 E-value=53 Score=36.29 Aligned_cols=151 Identities=13% Similarity=-0.012 Sum_probs=104.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhCCCh
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL---LSPLRVSTYNGILKMYSECDSM 461 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~---G~~pd~~tynaLI~ay~k~G~l 461 (773)
+--.|+..+|-..+++++.. .+.|...+.-.=++|.-.|+.+..+..++.++.. +++..+.+-..+.-++..||-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34567888888889998876 5668888888888999999999999888888765 2222233334444455689999
Q ss_pred HHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 004114 462 DDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA---GLKPDDQIFIGVFSACSALGDVVEGMLHFE 535 (773)
Q Consensus 462 ~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~---Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~ 535 (773)
++|++.-++..+- |.-+-.++...+-..|++.++.++..+-... +-..-..-|-...-.+...+.++.|+.+|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887643 5556667777888899999999887653321 100011123233334456688999999997
Q ss_pred H
Q 004114 536 S 536 (773)
Q Consensus 536 ~ 536 (773)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 6
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=84.92 E-value=49 Score=38.37 Aligned_cols=123 Identities=14% Similarity=0.208 Sum_probs=72.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 004114 387 KEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFS 466 (773)
Q Consensus 387 ~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~ 466 (773)
.+.-+.+|.++|++..+.|- ..+ .+.......-..++.+.++...+-..+---|-.++-|.|+.++|++
T Consensus 212 eA~Ti~Eae~l~rqAvkAgE----~~l-------g~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk 280 (539)
T PF04184_consen 212 EASTIVEAEELLRQAVKAGE----ASL-------GKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIK 280 (539)
T ss_pred cccCHHHHHHHHHHHHHHHH----Hhh-------chhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHH
Confidence 45567889999888776541 111 1111111111122222222222333333446666678899999999
Q ss_pred HHHHhhc--C---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 004114 467 VFSNMTE--R---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD--QIFIGVFSAC 521 (773)
Q Consensus 467 lf~~M~~--~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~--~Ty~~LL~a~ 521 (773)
.|.+|.+ | .......||.+|...+.+.++..++.+-.+... |.. ..|+..|-..
T Consensus 281 ~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaALLka 341 (539)
T PF04184_consen 281 MFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHHHHH
Confidence 9999863 3 234677899999999999999999988654322 333 3566655433
|
The molecular function of this protein is uncertain. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=84.68 E-value=20 Score=38.65 Aligned_cols=110 Identities=11% Similarity=0.198 Sum_probs=79.2
Q ss_pred CChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHc-CCC-hHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHH
Q 004114 490 GLGEDAVDIFSQFKQ-AGLKPDDQIFIGVFSACSA-LGD-VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEA 566 (773)
Q Consensus 490 G~~deAl~Lf~eM~~-~Gv~Pd~~Ty~~LL~a~~~-~G~-~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA 566 (773)
..+-+|+.+|+...- ..+--|..+...||..... .+. +..-.++.+-+...++-.++..+..++|+.+++.+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345678888873322 2345567777777777765 222 2223355555666667788889999999999999999999
Q ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCChhHHH
Q 004114 567 LEFIEKM----PMEPDVDVWEKLMNLCRMHGNLELGD 599 (773)
Q Consensus 567 ~~lf~~M----~~~Pd~~ty~~LI~a~~~~G~~e~A~ 599 (773)
.++++.. ...-|...|..+|+.....|+.+...
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 9999877 12447889999999999999965443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.47 E-value=44 Score=36.25 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=79.1
Q ss_pred HHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHH
Q 004114 453 KMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVE 529 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~de 529 (773)
......|+..+|..+|+.... .+...--.|+.+|...|+.+.|..++..+-..--.........=|..+.+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345668999999999988763 24556677889999999999999999987654222223332233444444444444
Q ss_pred HHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 530 GMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 530 A~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
...+-....++ | |...--.|.+.|...|+.++|.+.+-.+
T Consensus 222 ~~~l~~~~aad----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 222 IQDLQRRLAAD----PDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444333 5 5666667888899999999998876554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=84.16 E-value=39 Score=33.69 Aligned_cols=133 Identities=14% Similarity=0.095 Sum_probs=85.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC
Q 004114 395 IEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER 474 (773)
Q Consensus 395 l~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~ 474 (773)
++.++.+.+.++.|+...|..++..+.+.+.+... .+++..++-+|.......+-.+.. ....|..+=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 45566677889999999999999999999986554 444555666665554444433332 234455555555554
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 475 DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 475 d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
=-..+..++..+...|++-+|+.+.+..... +...-..++.|....++...-..+|.-.
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456778888999999999999998775321 2223345677777776655444444333
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.82 E-value=12 Score=40.44 Aligned_cols=95 Identities=12% Similarity=0.099 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHH-HHH
Q 004114 443 LRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNG---LGEDAVDIFSQFKQAGLKPDDQ-IFI 515 (773)
Q Consensus 443 pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G---~~deAl~Lf~eM~~~Gv~Pd~~-Ty~ 515 (773)
-|...|-.|-..|...|+.++|...|....+ ++...+..+..++.... +..+|..+|+++... .|+.+ +..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHH
Confidence 3555566666666666666666666654432 24444444444433322 234555666665542 33333 333
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHH
Q 004114 516 GVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 516 ~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
.|-.++...|++.+|...|+.|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 333455556666666666666544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=83.49 E-value=13 Score=35.72 Aligned_cols=60 Identities=20% Similarity=0.173 Sum_probs=27.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~ 441 (773)
.++.++..|+-+.--+++.++.+. -.+++.....+..||.+.|+..++.+++.+..+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344555555555555555444431 234445555555555555555555555555555553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=83.37 E-value=7 Score=37.84 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=25.1
Q ss_pred CCChHHHHHHHHHhhcC------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 458 CDSMDDAFSVFSNMTER------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~~------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
.|++++|++.|+.+..+ ..-+---|+.+|.+.+++++|+..++++++.
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45555555555555432 2233344555555566666666666555553
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=82.41 E-value=17 Score=45.71 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHhcC--ChhHHHHh
Q 004114 347 IQNGMMASQVLNNCKHED--DFAEASRS 372 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g--~~~~A~~v 372 (773)
.|+ .-.-.+|.+|.+.+ .+++|+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~k 814 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQK 814 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHH
Confidence 344 33446777888877 66666664
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.29 E-value=9.8 Score=40.53 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCc-chhhhHHH
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFKQAGLK--PDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSM-KHYVSIVD 555 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~--Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~-~tyn~LI~ 555 (773)
|+.-+..| +.|++.+|...|...++..-. -..-.+-.|..++...|+.++|..+|..+.++++-.|.. +..--|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444433 344466666666666554210 111234445555556666666666666665554433332 34444444
Q ss_pred HHHhCCCHHHHHHHHHhC
Q 004114 556 MLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 556 ~y~r~G~l~eA~~lf~~M 573 (773)
...+.|+.++|..+|++.
T Consensus 224 ~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 224 SLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 455555555555555544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.17 E-value=1.3e+02 Score=36.63 Aligned_cols=107 Identities=12% Similarity=0.131 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004114 512 QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRM 591 (773)
Q Consensus 512 ~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~ 591 (773)
.|.+-.+.-|...|.-.+|.++-.+. . .||...|-.=+.+++..++|++-+++-..+. ...=|.-.+.+|.+
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLK 756 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHh
Confidence 34455555666777777777654333 2 2677777777788888888888888777762 12334456777888
Q ss_pred cCChhHHHHHHHHHHHcCCCCchHHHHcCCchhhhh
Q 004114 592 HGNLELGDRCAEIVEQLDPSRLNEKSKAGLVPVNAS 627 (773)
Q Consensus 592 ~G~~e~A~~~~e~m~el~p~~~~~y~~aG~~~~~v~ 627 (773)
.|+.++|.+.+-+.-.+. +...+|...|.+.+++.
T Consensus 757 ~~n~~EA~KYiprv~~l~-ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGLQ-EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred cccHHHHhhhhhccCChH-HHHHHHHHhccHHHHHH
Confidence 888887776665544332 23345666666654433
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=81.78 E-value=1.1e+02 Score=35.66 Aligned_cols=169 Identities=9% Similarity=0.040 Sum_probs=124.3
Q ss_pred CChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 004114 364 DDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPL 443 (773)
Q Consensus 364 g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~p 443 (773)
|-+.-..+++.-+.+.++|.-+.++-.+.-+..+..+|+.-| -+-..|-.++..|... .-+.-..+++.+++..+.
T Consensus 55 g~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn- 130 (711)
T COG1747 55 GIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN- 130 (711)
T ss_pred HHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-
Confidence 444444455566677789999999999999999999999875 3567788899999888 567778899988887665
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC---------HhHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHH
Q 004114 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTERD---------LTSWDTMITGFAKNGLGEDAVDIFSQFKQ-AGLKPDDQI 513 (773)
Q Consensus 444 d~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d---------~~tyn~LI~ay~~~G~~deAl~Lf~eM~~-~Gv~Pd~~T 513 (773)
|++...-|.+-|-+ ++.+.|..+|.+...+= -..|.-|+..- ..+.|..+.+..++.. .|..--.+.
T Consensus 131 Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl 207 (711)
T COG1747 131 DVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVL 207 (711)
T ss_pred hHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHH
Confidence 66666777777777 88888888888776431 12677666532 2456677777777654 355555667
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 514 FIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 514 y~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
+--+-.-|....++++|++++..+.+
T Consensus 208 ~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 208 MQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHhh
Confidence 77777888889999999999886644
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=81.76 E-value=1.4e+02 Score=36.92 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=95.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH----H---HHHHHHHH-HHhcCCHHHHHHHHHHHHHh----CCCCCHHHHHHH
Q 004114 384 GLVKEGKVKEAIEVLGLLEKQCISVDL----P---TFSQLMQA-CGDAKALEEAKAVHEHVERL----LSPLRVSTYNGI 451 (773)
Q Consensus 384 a~~~~G~~~eAl~lf~~M~~~Gv~Pd~----~---ty~~LL~a-~~~~g~le~A~~l~~~m~k~----G~~pd~~tynaL 451 (773)
......++.+|..+..++...--.|+. . .+..|-.. ....++++.|..+-+..... -..+.++.+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 445677888888888777654222221 1 22222211 12456777777777766654 223455666667
Q ss_pred HHHHHhCCChHHHHHHHHHhhc----CCHhH---HHHHHH--HHHHcCC--hHHHHHHHHHHHHC--CCC----CCHHHH
Q 004114 452 LKMYSECDSMDDAFSVFSNMTE----RDLTS---WDTMIT--GFAKNGL--GEDAVDIFSQFKQA--GLK----PDDQIF 514 (773)
Q Consensus 452 I~ay~k~G~l~eA~~lf~~M~~----~d~~t---yn~LI~--ay~~~G~--~deAl~Lf~eM~~~--Gv~----Pd~~Ty 514 (773)
..+..-.|+++.|..+..+..+ -++.. |..++. .+-..|. ..+.+..|...... .-+ +-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7777777888888877665443 24443 333322 2334452 23333333333221 111 223355
Q ss_pred HHHHHHHHcCC-ChHHHHHHHHHHHHhcCCCCCcc--hhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 515 IGVFSACSALG-DVVEGMLHFESMSKDYGIVPSMK--HYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 515 ~~LL~a~~~~G-~~deA~~if~~M~~~~Gi~Pd~~--tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
..++.++.+.. ...++..-+ +....+...|-.. .+.+|+..+...|++++|...++++
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~-~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGI-EVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcc-hhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55565555521 111111111 1111112222221 1236677778889999998888877
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=81.72 E-value=52 Score=31.76 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=42.1
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCC
Q 004114 475 DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGI 543 (773)
Q Consensus 475 d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi 543 (773)
+..-.+.-+..+...|+-|.-.+++.++.+ +-+|+......+..||.+.|+..++-+++.+.-+. |+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 334455667777788888888888877765 34567777778888888888888888877776554 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.52 E-value=5.4 Score=44.68 Aligned_cols=51 Identities=25% Similarity=0.271 Sum_probs=38.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHH
Q 004114 383 DGLVKEGKVKEAIEVLGLLEKQCISVDLP----TFSQLMQACGDAKALEEAKAVHE 434 (773)
Q Consensus 383 ~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~----ty~~LL~a~~~~g~le~A~~l~~ 434 (773)
.-+|+.|+....+.+|+..++.|.. |.. .|+.|-.||.-.+++++|++.|.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 4578999999999999999888743 433 45566667777788899988875
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.03 E-value=15 Score=39.71 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=59.2
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHc---CCChHHHHHHHHHHHHhcCCCC-Ccch
Q 004114 475 DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA-GLKPDDQIFIGVFSACSA---LGDVVEGMLHFESMSKDYGIVP-SMKH 549 (773)
Q Consensus 475 d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~-Gv~Pd~~Ty~~LL~a~~~---~G~~deA~~if~~M~~~~Gi~P-d~~t 549 (773)
|...|-.|-..|...|+++.|..-|..-.+. |-. ...+..+-.++.. ..+-.++..+|+++.+. .| ++..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~---D~~~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARALLRQALAL---DPANIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc---CCccHHH
Confidence 6777888888888888888888877776552 222 2333333333322 22344556666666442 23 3344
Q ss_pred hhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 004114 550 YVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMN 587 (773)
Q Consensus 550 yn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~ 587 (773)
-..|.-.+...|++.+|...++.| ..-|....|..+|.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 444455566666666666666666 32333334444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 773 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-14 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 2e-06 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 9e-14
Identities = 82/683 (12%), Positives = 177/683 (25%), Gaps = 231/683 (33%)
Query: 129 NCQKASGGYRESFSSEQQRNIVGENGNFKGHYRQIDGYGKQNSNGIYGESSRGFQQNSNE 188
+C+ + S E+ +I+ G R + +
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ------------- 80
Query: 189 FYQHHAGVNSESHINEFQNNTFQQNGNFNDYGWYNNGQPHPNLSGAQPQMSRSGGNANVQ 248
+F + N Y +
Sbjct: 81 ---------------KFVEEVLRIN-----YKFL-------------------------- 94
Query: 249 NQYGPIHYGPGEVMQNRNGFNSQRFSESLGSFNGNCMQDTGQHQQALSGHYSGNFGIHQN 308
PI + + QR + L +N N Q + + + +
Sbjct: 95 --MSPIKTEQRQPSMMTRMYIEQR--DRL--YNDN---------QVFAKY-------NVS 132
Query: 309 SPSFYQQDQNGGQYQWDQSRRQYQQNPNEGQYQSYSGNIQNGMMAS--QVLNNCKHEDDF 366
Y + + + P + + +G++ S +
Sbjct: 133 RLQPYLKLRQA----------LLELRPAKNV-------LIDGVLGSGKTWV--------- 166
Query: 367 AEASRSSQNNGTLEQLDGLV---KEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDA 423
A + ++D + VL +L+K +D S+ +
Sbjct: 167 --ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 424 KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC-DSMDD--------AFSVFSN--MT 472
+ + + RLL K Y C + + AF++ +T
Sbjct: 225 LRIHSIQ---AELRRLLK----------SKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 473 ERDLTSWDTMITGFAKN--------GLGED-AVDIFSQFKQAGLKPDD---QIFIGVFSA 520
R D + + L D + ++ +P D +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPRE-------V 322
Query: 521 CS----ALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPME 576
+ L + E + + ++ KH D L + ++ +L +E P E
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNW------KHVNC--DKLTTI--IESSLNVLE--PAE 370
Query: 577 ------------PDVDVWEKLMNLCRMHGNLELGDRCAEIVEQL-DPSRLNEKSKAGLVP 623
P + L L + ++ D +V +L S + ++ K +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTIL--LSLIWFDVIKSD-VMVVVNKLHKYSLVEKQPKESTIS 427
Query: 624 VNA--SELAKEKENKKLASQNLLEVRSKVHEYRAGDTSHPETDK-IYALI---------- 670
+ + EL + EN+ +++++ + + + D P D+ Y+ I
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 671 -------------RGLRAQMKEAGYIPETRF----VLHDI--------DQEGKEEALLAH 705
R L +++ L + D + K E L+
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 706 SERLAVSHG--LLSSPARAPIRI 726
L+ S +RI
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRI 570
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.2 bits (118), Expect = 2e-06
Identities = 21/175 (12%), Positives = 49/175 (28%), Gaps = 7/175 (4%)
Query: 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNM 471
++L+Q +L+ +A + + K D + A +
Sbjct: 94 QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153
Query: 472 TER-------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL 524
+ L ++ ++ G+A+ G ++ V + K AGL PD +
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213
Query: 525 GDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDV 579
+ G+ ++ L + + P +
Sbjct: 214 DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 773 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.9 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.89 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.74 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.69 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.6 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.57 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.55 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.55 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.5 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.5 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.5 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.49 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.48 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.47 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.46 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.44 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.43 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.42 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.4 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.4 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.38 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.38 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.38 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.37 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.37 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.34 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.32 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.31 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.29 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.27 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.25 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.22 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.21 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.2 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.17 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.16 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.14 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.12 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.09 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.08 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.06 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.06 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.04 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.01 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.01 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.99 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.94 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.93 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.91 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.89 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.87 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.87 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.86 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.86 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.86 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.85 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.85 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.83 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.82 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.82 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 98.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.81 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.76 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 98.71 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.7 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.7 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.69 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.68 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.61 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.61 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.61 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.52 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.51 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.48 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.45 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.45 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.44 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.41 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.32 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.25 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.25 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.24 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.24 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.21 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.19 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.19 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.19 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.18 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.17 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.17 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.16 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.12 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.11 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.11 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.1 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.09 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.09 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.08 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.07 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.07 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.06 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.05 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.0 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 97.93 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.92 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.91 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.9 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.88 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.85 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.83 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.83 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.82 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.72 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.72 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.71 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.71 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.7 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.69 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.66 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.66 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.64 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.63 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.62 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.61 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.6 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.56 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.54 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.52 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.47 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.47 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.46 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.45 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.44 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.43 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.43 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.42 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.42 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.4 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.39 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.35 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.35 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.34 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.33 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.32 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.32 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.32 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.31 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.3 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.25 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.25 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.24 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.22 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.22 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.2 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.2 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.2 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.16 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 97.14 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.03 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.94 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 96.93 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 96.91 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 96.9 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 96.87 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.84 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.82 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 96.78 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.75 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.73 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 96.65 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 96.62 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 96.62 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 96.56 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 96.53 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.45 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 96.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.32 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.3 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.25 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.18 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.08 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 96.08 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 95.92 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 95.84 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 95.81 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 95.69 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 95.57 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 95.54 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 95.52 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 95.42 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 95.41 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 94.88 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 94.66 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 94.46 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 94.43 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 94.34 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.3 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 94.21 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.17 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 93.77 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 93.49 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.39 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 93.07 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 92.35 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 91.15 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 90.58 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 89.15 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 87.15 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 86.62 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 86.16 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.35 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 84.91 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.12 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 83.72 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 83.03 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 81.75 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 80.9 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 80.6 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=282.51 Aligned_cols=198 Identities=15% Similarity=0.187 Sum_probs=133.5
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC---------hHH
Q 004114 394 AIEVLGLLEKQCISVDL-PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS---------MDD 463 (773)
Q Consensus 394 Al~lf~~M~~~Gv~Pd~-~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~---------l~e 463 (773)
+..+.++|.+.++.+.+ .+++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++++. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44455566666555443 35666777777777777777777777777777777777777777776554 566
Q ss_pred HHHHHHHhh----cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 464 AFSVFSNMT----ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 464 A~~lf~~M~----~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
|.++|++|. .||++|||+||.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 777777776 3577777777777777777777777777777777777777777777777777777777777777765
Q ss_pred hcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHc
Q 004114 540 DYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM---PMEPDVDVWEKLMNLCRMH 592 (773)
Q Consensus 540 ~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M---~~~Pd~~ty~~LI~a~~~~ 592 (773)
. |+.||..||++||.+|++.|++++|.++|++| ++.|+..||+.|+..|+..
T Consensus 169 ~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 S-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp T-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred c-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 5 77777777777777777777777777777777 6677777777777777653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=281.81 Aligned_cols=180 Identities=15% Similarity=0.212 Sum_probs=171.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHhCCCCCHHHHHH
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKA---------LEEAKAVHEHVERLLSPLRVSTYNG 450 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~---------le~A~~l~~~m~k~G~~pd~~tyna 450 (773)
.+|++||+.|++++|+++|++|.+.|++||.+||++||.+|++.+. ++.|.++|++|.+.|+.||..||++
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~ 110 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN 110 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3688888888899999999999999999999999999999997654 7999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHhhc----CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 451 ILKMYSECDSMDDAFSVFSNMTE----RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 451 LI~ay~k~G~l~eA~~lf~~M~~----~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
||++|+++|++++|+++|++|.+ ||++|||+||.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|+
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence 99999999999999999999984 79999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhC
Q 004114 527 VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560 (773)
Q Consensus 527 ~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~ 560 (773)
+++|.++|++|.+. |+.|+..||+.|++.|+..
T Consensus 191 ~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 191 ADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999876 9999999999999999863
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-21 Score=219.99 Aligned_cols=279 Identities=9% Similarity=-0.023 Sum_probs=234.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHhhh-------------------------hccHHHHHHHHHHcCCHHHHHHHHHH
Q 004114 346 NIQNGMMASQVLNNCKHEDDFAEASRSSQ-------------------------NNGTLEQLDGLVKEGKVKEAIEVLGL 400 (773)
Q Consensus 346 l~pd~~~~n~LI~~y~k~g~~~~A~~v~~-------------------------~~~~~~LI~a~~~~G~~~eAl~lf~~ 400 (773)
..+++.+++.++.+|.++|++++|.+++. ...+..++.+|.+.|++++|+++|++
T Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46788899999999999999999998765 12234588889999999999999988
Q ss_pred HHHCCC----------------------------------------------------------------------CCCH
Q 004114 401 LEKQCI----------------------------------------------------------------------SVDL 410 (773)
Q Consensus 401 M~~~Gv----------------------------------------------------------------------~Pd~ 410 (773)
|.+.+. .++.
T Consensus 226 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 305 (597)
T 2xpi_A 226 ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSS 305 (597)
T ss_dssp HHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCH
T ss_pred HHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchH
Confidence 865431 1677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---------------------------------CCCHHHHHHHHHHHHh
Q 004114 411 PTFSQLMQACGDAKALEEAKAVHEHVERLLS---------------------------------PLRVSTYNGILKMYSE 457 (773)
Q Consensus 411 ~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~---------------------------------~pd~~tynaLI~ay~k 457 (773)
.++..++.++.+.|++++|.++|++|.+.+. +.+..+++.++.+|.+
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC 385 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 8888888889999999999999988876532 3357788999999999
Q ss_pred CCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 004114 458 CDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if 534 (773)
+|++++|+++|++|.+ .+..+|+.|+.+|.+.|++++|+++|++|.+.. ..+..+|..++.+|.+.|++++|.++|
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998863 368899999999999999999999999998764 347789999999999999999999999
Q ss_pred HHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004114 535 ESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-------PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIV 605 (773)
Q Consensus 535 ~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-------~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m 605 (773)
++|.+. .+.+..+|+.|+.+|.+.|++++|.++|++| +..|+ ..+|..+..+|.+.|++++|..+++.+
T Consensus 465 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 465 QSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999775 3446889999999999999999999999988 55787 789999999999999999999999999
Q ss_pred HHcCCCCc-------hHHHHcCCchhhhh
Q 004114 606 EQLDPSRL-------NEKSKAGLVPVNAS 627 (773)
Q Consensus 606 ~el~p~~~-------~~y~~aG~~~~~v~ 627 (773)
.++.|++. ..|...|.+.....
T Consensus 543 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 543 LLLSTNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 99999885 45667777764433
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.89 E-value=6e-21 Score=219.21 Aligned_cols=285 Identities=9% Similarity=-0.006 Sum_probs=245.0
Q ss_pred HHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHH
Q 004114 329 RQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLG 399 (773)
Q Consensus 329 ~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~ 399 (773)
+.++.+..++..+.+. .+++.++..++.+|.+.|++++|..++. ...+..++.+|.+.|++++|+++|+
T Consensus 286 g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 286 DELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp HHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3344444444433332 4899999999999999999999999753 2233458999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCH
Q 004114 400 LLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDL 476 (773)
Q Consensus 400 ~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~ 476 (773)
+|.+.. ..+..++..+..+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|++|.+ .+.
T Consensus 364 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 441 (597)
T 2xpi_A 364 DLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH 441 (597)
T ss_dssp HHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 998653 4578899999999999999999999999999864 34688999999999999999999999999874 378
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhc---CCCCC--cchhh
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDY---GIVPS--MKHYV 551 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~---Gi~Pd--~~tyn 551 (773)
.+|+.++.+|.+.|++++|+++|++|.+.. ..+..+|..++.+|.+.|++++|.++|++|.+.. +..|+ ..+|.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 999999999999999999999999998864 3468899999999999999999999999987642 66787 78999
Q ss_pred hHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHH
Q 004114 552 SIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSK 618 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~ 618 (773)
.++.+|.+.|++++|.++|+++ ...| +..+|..|..+|...|++++|..+++.+.+++|++...+..
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 9999999999999999999987 3334 78999999999999999999999999999999998755443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-15 Score=162.55 Aligned_cols=267 Identities=13% Similarity=0.084 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhhh---------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQN---------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQA 419 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~~---------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a 419 (773)
+..++..+..+|.+.|++++|...+.. .....+...|...|++++|+++|.++.+.. +-+..+|..+..+
T Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 178 (388)
T 1w3b_A 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCV 178 (388)
T ss_dssp CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345677777777777777777775321 111225556667788888888888877652 2246677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHH
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAV 496 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl 496 (773)
+...|++++|...|+++++.. +.+...+..+...+.+.|++++|+..|++..+ | +..+|..+..+|...|++++|+
T Consensus 179 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 257 (388)
T 1w3b_A 179 FNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257 (388)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888887764 23566777777888888888888888876652 3 5678888888888888888888
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-C
Q 004114 497 DIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-P 574 (773)
Q Consensus 497 ~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~ 574 (773)
..|+++.+.. | +..+|..+..++.+.|++++|..+|+++.+. .+.+..++..+..+|.+.|++++|.++++++ .
T Consensus 258 ~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 258 DTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888753 4 3567888888888888888888888888765 3456778888888888888888888888877 4
Q ss_pred CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcCC
Q 004114 575 MEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGL 621 (773)
Q Consensus 575 ~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG~ 621 (773)
..| +..+|..+..++.+.|++++|...++.+.++.|+...++...|.
T Consensus 334 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHH
Confidence 445 46788888888888888888888888888888887666554443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-15 Score=165.36 Aligned_cols=267 Identities=13% Similarity=0.075 Sum_probs=223.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDL----PTF 413 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~----~ty 413 (773)
+.+..++..+..+|...|++++|...+. ...+..+..+|.+.|++++|+++|+++.+. .|+. .++
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ 134 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQ 134 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHH
Confidence 4568899999999999999999999642 122234888999999999999999999875 4543 455
Q ss_pred HHHH------------HHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhH
Q 004114 414 SQLM------------QACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTS 478 (773)
Q Consensus 414 ~~LL------------~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~t 478 (773)
..+. ..+...|++++|..+++.+++.. +.+..++..+..+|.+.|++++|+.+|+++.+ .+..+
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 213 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 5553 34888999999999999999874 44788999999999999999999999999874 47899
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH------------HHHHHcCCChHHHHHHHHHHHHhcCCCC
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQ-IFIGV------------FSACSALGDVVEGMLHFESMSKDYGIVP 545 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~-Ty~~L------------L~a~~~~G~~deA~~if~~M~~~~Gi~P 545 (773)
|..+..+|...|++++|+.+|+++... .|+.. .+..+ ..+|.+.|++++|..+|..+.+. .|
T Consensus 214 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p 288 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EP 288 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CC
Confidence 999999999999999999999999874 45544 33333 78899999999999999999764 35
Q ss_pred C-----cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHH
Q 004114 546 S-----MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSK 618 (773)
Q Consensus 546 d-----~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~ 618 (773)
+ ..+|..+..+|.+.|++++|.++++++ .+.| +..+|..+..+|...|++++|...++.+.++.|++...+..
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 368 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHH
Confidence 4 457889999999999999999999987 4445 68999999999999999999999999999999998766554
Q ss_pred cCC
Q 004114 619 AGL 621 (773)
Q Consensus 619 aG~ 621 (773)
.+.
T Consensus 369 l~~ 371 (450)
T 2y4t_A 369 LEK 371 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-18 Score=203.74 Aligned_cols=157 Identities=13% Similarity=0.123 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh----cCCHhHHHH
Q 004114 409 DLPTFSQLMQACGDAKALEEAKAVHEHVER---LLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT----ERDLTSWDT 481 (773)
Q Consensus 409 d~~ty~~LL~a~~~~g~le~A~~l~~~m~k---~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~----~~d~~tyn~ 481 (773)
-..||++||++||+.|++++|.++|.+|.+ .|+.||++|||+||++||+.|++++|.++|++|. .||++|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456999999999999999999999988764 5899999999999999999999999999999998 489999999
Q ss_pred HHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC------cchhhhHH
Q 004114 482 MITGFAKNGLG-EDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS------MKHYVSIV 554 (773)
Q Consensus 482 LI~ay~~~G~~-deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd------~~tyn~LI 554 (773)
||.+||+.|+. ++|.++|++|.+.|+.||.+||+++|.++.+.+-++.. +++.. ++.|+ +.+...|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V----rkv~P--~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV----HKVKP--TFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH----GGGCC--CCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH----HHhCc--ccCCCCCCcccccchHHHH
Confidence 99999999985 78999999999999999999999999887775444433 33422 34443 66777888
Q ss_pred HHHHhCC---------CHHHHHHHHH
Q 004114 555 DMLGSTG---------YLDEALEFIE 571 (773)
Q Consensus 555 ~~y~r~G---------~l~eA~~lf~ 571 (773)
+.|.+.+ -+++-.++|+
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~ 305 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFE 305 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHH
Confidence 9998766 2456666654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-14 Score=157.75 Aligned_cols=271 Identities=16% Similarity=0.120 Sum_probs=214.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhhhh---------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSSQN---------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVD-LPTFSQL 416 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~~~---------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd-~~ty~~L 416 (773)
+.+..++..+..+|.+.|++++|...+.. ..+..+..+|.+.|++++|++.|.++.+. .|+ ..++..+
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 141 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDL 141 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45677888888899999999888885421 12334778888899999999999888875 344 3456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChH
Q 004114 417 MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGE 493 (773)
Q Consensus 417 L~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~d 493 (773)
...+...|++++|.++|..+++.. +-+..+|..+..+|.+.|++++|+..|+++.+ | +...|..+...+...|+++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 777778899999999998888864 33577888888899999999999999988873 3 5677888888889999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHH
Q 004114 494 DAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIE 571 (773)
Q Consensus 494 eAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~ 571 (773)
+|+..|++.... .| +..++..+..++...|++++|...|+++.+. .| +..+|..+..+|.+.|++++|.++|+
T Consensus 221 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 221 RAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999888774 34 4678888889999999999999999988663 34 46788889999999999999999998
Q ss_pred hC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch-------HHHHcCCchhh
Q 004114 572 KM-PM-EPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN-------EKSKAGLVPVN 625 (773)
Q Consensus 572 ~M-~~-~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~-------~y~~aG~~~~~ 625 (773)
++ .. ..+..+|..+...+...|++++|...++.+.++.|++.. .+...|.+...
T Consensus 296 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 87 22 346788999999999999999999999999988888753 34556666443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.2e-18 Score=201.38 Aligned_cols=151 Identities=15% Similarity=0.171 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHhh-------cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 004114 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMT-------ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIF 514 (773)
Q Consensus 442 ~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~-------~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty 514 (773)
..-..|||+||++|||+|++++|.++|++|. .||++|||+||.|||+.|++++|+++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3346799999999999999999999998875 479999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCh-HHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCC----CCHHHHHHHHHHH
Q 004114 515 IGVFSACSALGDV-VEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPME----PDVDVWEKLMNLC 589 (773)
Q Consensus 515 ~~LL~a~~~~G~~-deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~----Pd~~ty~~LI~a~ 589 (773)
++||.++|+.|+. ++|.++|++|.++ |+.||..+|++++..+.+.+-++.+.++...+... |.+.+...|.+.|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999999985 7899999999887 99999999999999888876666665554444111 1234444455555
Q ss_pred HHcC
Q 004114 590 RMHG 593 (773)
Q Consensus 590 ~~~G 593 (773)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5444
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-14 Score=157.93 Aligned_cols=271 Identities=14% Similarity=0.065 Sum_probs=222.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhhh---------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQN---------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQA 419 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~~---------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a 419 (773)
++.++..+...|.+.|++++|..++.. ..+..+..+|.+.|++++|+.+|.++.+.. +.+..++..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 456788899999999999999997531 222347889999999999999999999874 3367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCC-H---HHHHHHHH------------HHHhCCChHHHHHHHHHhhc---CCHhHHH
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLR-V---STYNGILK------------MYSECDSMDDAFSVFSNMTE---RDLTSWD 480 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd-~---~tynaLI~------------ay~k~G~l~eA~~lf~~M~~---~d~~tyn 480 (773)
+.+.|++++|..+++.+++.. |+ . .++..|+. .|.+.|++++|+.+|+++.+ .+..+|.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999998853 44 3 55555544 48999999999999999874 3788999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-cchhhhH------
Q 004114 481 TMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS-MKHYVSI------ 553 (773)
Q Consensus 481 ~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-~~tyn~L------ 553 (773)
.+..+|.+.|++++|+.+|+++.+.. ..+..++..+..++...|++++|..+|+.+.+. .|+ ...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHH
Confidence 99999999999999999999998753 346789999999999999999999999999764 344 3444444
Q ss_pred ------HHHHHhCCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch-------
Q 004114 554 ------VDMLGSTGYLDEALEFIEKM-PMEPD-----VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN------- 614 (773)
Q Consensus 554 ------I~~y~r~G~l~eA~~lf~~M-~~~Pd-----~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~------- 614 (773)
..+|.+.|++++|.++|+++ .+.|+ ...|..+..++.+.|++++|...++.+.++.|.+..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 78899999999999999988 33454 457888999999999999999999999999998863
Q ss_pred HHHHcCCchhhh
Q 004114 615 EKSKAGLVPVNA 626 (773)
Q Consensus 615 ~y~~aG~~~~~v 626 (773)
.+...|.+....
T Consensus 338 ~~~~~~~~~~A~ 349 (450)
T 2y4t_A 338 AYLIEEMYDEAI 349 (450)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHhcCHHHHH
Confidence 445566665433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-13 Score=141.46 Aligned_cols=267 Identities=11% Similarity=0.008 Sum_probs=221.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004114 347 IQNGMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLM 417 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL 417 (773)
..+..++..+...+...|++++|..++. ...+..++.++.+.|++++|+.++.++.+.. +-+..++..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 4455566688888889999999999642 2223347788999999999999999998863 23567888888
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChH
Q 004114 418 QACGDAK-ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGE 493 (773)
Q Consensus 418 ~a~~~~g-~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~d 493 (773)
..+...| ++++|...+..+++.. +.+..++..+..+|.+.|++++|+..|+++.+ | +..+|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999998864 33567899999999999999999999998874 3 5677888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcC-------CCCCcchhhhHHHHHHhCCCHHHH
Q 004114 494 DAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYG-------IVPSMKHYVSIVDMLGSTGYLDEA 566 (773)
Q Consensus 494 eAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~G-------i~Pd~~tyn~LI~~y~r~G~l~eA 566 (773)
+|+.+|++..+.. ..+..++..+...+...|++++|..+++.+.+... .+....++..+..+|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999998753 33567889999999999999999999998876421 133467899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 567 LEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 567 ~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
.+.|++. ...| +..+|..+..++...|++++|...++.+.++.|++...+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 9999987 2233 578899999999999999999999999999999886444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-12 Score=145.94 Aligned_cols=221 Identities=10% Similarity=-0.026 Sum_probs=151.8
Q ss_pred cCCHHHHHHHHHHHHH-----CCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 004114 388 EGKVKEAIEVLGLLEK-----QCISV--------DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKM 454 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~-----~Gv~P--------d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~a 454 (773)
.|++++|+.+|+++.+ ..-.| +..++..+..++...|++++|..+++.+++.... ..++..+..+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHH
Confidence 4556666666666555 21111 2345555666666777777777777777665433 6667777777
Q ss_pred HHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 004114 455 YSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGM 531 (773)
Q Consensus 455 y~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~ 531 (773)
|.+.|++++|+..|+++.+ .+..+|..+...|...|++++|+..|+++.+.... +..++..+..++...|++++|.
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777776653 25567777778888888888888888887765322 4556777777778888888888
Q ss_pred HHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHH---cCChhHHHH
Q 004114 532 LHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM----PMEPD----VDVWEKLMNLCRM---HGNLELGDR 600 (773)
Q Consensus 532 ~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd----~~ty~~LI~a~~~---~G~~e~A~~ 600 (773)
.++..+.+. .+.+...+..+..+|.+.|++++|.+.++++ +-.++ ..+|..+..++.. .|+++.|..
T Consensus 359 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 359 TLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 888877654 2335667777888888888888888888776 21222 4477777788888 888888888
Q ss_pred HHHHHHHcCCCCc
Q 004114 601 CAEIVEQLDPSRL 613 (773)
Q Consensus 601 ~~e~m~el~p~~~ 613 (773)
.++.+.++.|.+.
T Consensus 437 ~~~~a~~~~~~~~ 449 (514)
T 2gw1_A 437 LLEKASKLDPRSE 449 (514)
T ss_dssp HHHHHHHHCTTCH
T ss_pred HHHHHHHhCcccH
Confidence 8888888888775
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-11 Score=131.03 Aligned_cols=274 Identities=13% Similarity=0.070 Sum_probs=134.1
Q ss_pred HhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHH
Q 004114 331 YQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLL 401 (773)
Q Consensus 331 f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M 401 (773)
|+.+......+++.. +.+..++..+...|...|++++|...+. ...+..+...|.+.|++++|+..|.++
T Consensus 19 ~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 19 LADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 97 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344444444443322 2234455555555555555555555321 011112455555555566665555555
Q ss_pred HHCCCCC----CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHH
Q 004114 402 EKQCISV----DLPTFSQL------------MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAF 465 (773)
Q Consensus 402 ~~~Gv~P----d~~ty~~L------------L~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~ 465 (773)
.+. .| +...+..+ ...+...|++++|..++..+.+.. +.+..++..+..+|.+.|++++|+
T Consensus 98 ~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~ 174 (359)
T 3ieg_A 98 LKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAI 174 (359)
T ss_dssp HTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 543 23 22222222 244455555555655555555543 224455555555555556666665
Q ss_pred HHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHH------------HHHHHHHcCCChHH
Q 004114 466 SVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD-QIFI------------GVFSACSALGDVVE 529 (773)
Q Consensus 466 ~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~-~Ty~------------~LL~a~~~~G~~de 529 (773)
..|+++.+ .+..+|..+...|...|++++|+..|++..+.. |+. .++. .+...+...|++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 252 (359)
T 3ieg_A 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 252 (359)
T ss_dssp HHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55555542 244555555555555555666655555555432 221 1111 11334555555555
Q ss_pred HHHHHHHHHHhcCCCCCc-----chhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHH
Q 004114 530 GMLHFESMSKDYGIVPSM-----KHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCA 602 (773)
Q Consensus 530 A~~if~~M~~~~Gi~Pd~-----~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~ 602 (773)
|..+++.+.+. .|+. ..+..+..+|.+.|++++|.+++++. ...| +..+|..+..++...|++++|...+
T Consensus 253 A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 329 (359)
T 3ieg_A 253 ATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY 329 (359)
T ss_dssp HHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555443 1221 12333445555555666555555554 2222 3455555555555555555555555
Q ss_pred HHHHHcCCCCc
Q 004114 603 EIVEQLDPSRL 613 (773)
Q Consensus 603 e~m~el~p~~~ 613 (773)
+.+.+++|++.
T Consensus 330 ~~a~~~~p~~~ 340 (359)
T 3ieg_A 330 EAAQEHNENDQ 340 (359)
T ss_dssp HHHHTTCTTCH
T ss_pred HHHHhcCCCCh
Confidence 55555555543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.7e-12 Score=133.02 Aligned_cols=273 Identities=13% Similarity=0.041 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 350 GMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQAC 420 (773)
Q Consensus 350 ~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~ 420 (773)
+..+..+...+...|++++|...+. ...+..+...+...|++++|+..|+++.+.. +-+...+..+..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 4566678889999999999999642 1222347888999999999999999998863 23667899999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCC--CCHHHHHHH------------HHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHH
Q 004114 421 GDAKALEEAKAVHEHVERLLSP--LRVSTYNGI------------LKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMI 483 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~--pd~~tynaL------------I~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI 483 (773)
...|++++|...+..+++.... .+...+..+ ...+...|++++|+.+|+++.+ .+..+|..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999875320 134444444 5889999999999999998873 3778899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-cchhh-----------
Q 004114 484 TGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS-MKHYV----------- 551 (773)
Q Consensus 484 ~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-~~tyn----------- 551 (773)
..|...|++++|+..|+++.+.. ..+..++..+...+...|++++|..+|+...+. .|+ ...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHH
Confidence 99999999999999999998753 346778899999999999999999999998765 233 23332
Q ss_pred -hHHHHHHhCCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch-------HHH
Q 004114 552 -SIVDMLGSTGYLDEALEFIEKM-PMEPD-V----DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN-------EKS 617 (773)
Q Consensus 552 -~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~----~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~-------~y~ 617 (773)
.+...+.+.|++++|.++++++ ...|+ . ..|..+..++...|+++.|...++.+.++.|.++. .+.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3366799999999999999987 33343 2 23556778899999999999999999999998863 455
Q ss_pred HcCCchhhhh
Q 004114 618 KAGLVPVNAS 627 (773)
Q Consensus 618 ~aG~~~~~v~ 627 (773)
..|.+.....
T Consensus 318 ~~g~~~~A~~ 327 (359)
T 3ieg_A 318 IEEMYDEAIQ 327 (359)
T ss_dssp HTTCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 6666654433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=140.79 Aligned_cols=231 Identities=13% Similarity=0.070 Sum_probs=191.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 378 TLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 378 ~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
+..+...+.+.|++++|+++|+++.+.. +.+..+|..+..++...|++++|..+|+.+++.. +.+..++..+..+|.+
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 5567889999999999999999998864 3477899999999999999999999999999874 3468899999999999
Q ss_pred CCChHHHHHHHHHhhcC---C----------HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHc
Q 004114 458 CDSMDDAFSVFSNMTER---D----------LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLK-PDDQIFIGVFSACSA 523 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~~---d----------~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~-Pd~~Ty~~LL~a~~~ 523 (773)
.|++++|+.+|+++.+. + ...+..+...|...|++++|+.+|+++.+..-. ++..++..+...+..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 99999999999998742 1 223445688999999999999999999886422 257899999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHH
Q 004114 524 LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRC 601 (773)
Q Consensus 524 ~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~ 601 (773)
.|++++|+.+|+++.+. .+.+..+|..+..+|.+.|++++|.+.|+++ .+.| +..+|..+..+|...|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999998775 3346789999999999999999999999987 3345 488999999999999999999999
Q ss_pred HHHHHHcCCCC
Q 004114 602 AEIVEQLDPSR 612 (773)
Q Consensus 602 ~e~m~el~p~~ 612 (773)
++.+.++.|..
T Consensus 304 ~~~al~~~~~~ 314 (365)
T 4eqf_A 304 FLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHhCccc
Confidence 99999887764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.7e-12 Score=133.16 Aligned_cols=224 Identities=9% Similarity=0.047 Sum_probs=188.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPL-RVSTYNGILKMYSECD 459 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~p-d~~tynaLI~ay~k~G 459 (773)
+..+|...|++++|+..++.. -.|+..++..+...+...++.++|.+.++.+++.+..| +...+..+..+|.+.|
T Consensus 40 l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 678999999999999877542 35677788889999999999999999999999887545 5666777779999999
Q ss_pred ChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHcCCChHHHHHHHHH
Q 004114 460 SMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIF---IGVFSACSALGDVVEGMLHFES 536 (773)
Q Consensus 460 ~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty---~~LL~a~~~~G~~deA~~if~~ 536 (773)
++++|+++|++ ..+...+..++..|.+.|++++|++.|+++.+.. |+.... ..++..+...|++++|..+|++
T Consensus 116 ~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 116 NPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp CHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999998 4578899999999999999999999999999864 664321 2233444556999999999999
Q ss_pred HHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhH-HHHHHHHHHHcCCCCc
Q 004114 537 MSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLEL-GDRCAEIVEQLDPSRL 613 (773)
Q Consensus 537 M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~-A~~~~e~m~el~p~~~ 613 (773)
+.+. .+.+...++.+..+|.+.|++++|.+.|++. ...| +..+|..++..+...|+.++ +.++++.+.+++|+++
T Consensus 192 ~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 192 MADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 9886 4567889999999999999999999999986 4445 57889999999999999875 5789999999999996
Q ss_pred h
Q 004114 614 N 614 (773)
Q Consensus 614 ~ 614 (773)
.
T Consensus 270 ~ 270 (291)
T 3mkr_A 270 F 270 (291)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-11 Score=129.94 Aligned_cols=234 Identities=9% Similarity=-0.010 Sum_probs=197.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 378 TLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 378 ~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
...+...+...|++++|+++|+++.+.. +.+..++..++.++...|++++|..++..+++.. +.+..++..+...|..
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 3457888899999999999999998764 2344566677788899999999999999999874 3367788999999999
Q ss_pred CC-ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 004114 458 CD-SMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLH 533 (773)
Q Consensus 458 ~G-~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~i 533 (773)
.| +.++|+..|+++.+ .+..+|..+...|...|++++|+..|+++.+.... +..++..+...+...|++++|..+
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99 99999999998874 26778999999999999999999999999886422 346677788999999999999999
Q ss_pred HHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-C----------CCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 004114 534 FESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-P----------MEPDVDVWEKLMNLCRMHGNLELGDRCA 602 (773)
Q Consensus 534 f~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~----------~~Pd~~ty~~LI~a~~~~G~~e~A~~~~ 602 (773)
++.+.+. .+.+...+..+...|.+.|++++|.+++++. . ...+..+|..+..++...|++++|...+
T Consensus 182 ~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 182 FSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9998654 2345688899999999999999999999876 1 1234678999999999999999999999
Q ss_pred HHHHHcCCCCchHH
Q 004114 603 EIVEQLDPSRLNEK 616 (773)
Q Consensus 603 e~m~el~p~~~~~y 616 (773)
+.+.++.|.+...+
T Consensus 260 ~~a~~~~~~~~~~~ 273 (330)
T 3hym_B 260 RQALVLIPQNASTY 273 (330)
T ss_dssp HHHHHHSTTCSHHH
T ss_pred HHHHhhCccchHHH
Confidence 99999999986444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-12 Score=137.32 Aligned_cols=233 Identities=10% Similarity=0.042 Sum_probs=195.6
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 004114 376 NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMY 455 (773)
Q Consensus 376 ~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay 455 (773)
..+..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+..+++.. +.+..++..+..+|
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 335568889999999999999999999874 3467789999999999999999999999999875 44788999999999
Q ss_pred HhCCChHHHHHHHHHhhcC---CHhHHHH---------------HHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHH
Q 004114 456 SECDSMDDAFSVFSNMTER---DLTSWDT---------------MITGFAKNGLGEDAVDIFSQFKQAGLK-PDDQIFIG 516 (773)
Q Consensus 456 ~k~G~l~eA~~lf~~M~~~---d~~tyn~---------------LI~ay~~~G~~deAl~Lf~eM~~~Gv~-Pd~~Ty~~ 516 (773)
.+.|++++|+..|+++.+. +...+.. .+..+...|++++|+.+|+++.+.... ++..++..
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 9999999999999988742 2222221 244445899999999999999885422 14788999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 004114 517 VFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGN 594 (773)
Q Consensus 517 LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~ 594 (773)
+...+...|++++|..+|.++.+. .+.+...+..+..+|.+.|++++|.++|+++ .+.| +..+|..+..++...|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999998765 2335688999999999999999999999987 3334 57899999999999999
Q ss_pred hhHHHHHHHHHHHcCCCC
Q 004114 595 LELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 595 ~e~A~~~~e~m~el~p~~ 612 (773)
+++|...++.+.++.|..
T Consensus 301 ~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999999988766
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=140.71 Aligned_cols=251 Identities=10% Similarity=-0.041 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 350 GMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQAC 420 (773)
Q Consensus 350 ~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~ 420 (773)
...+..+...|.+.|++++|...+. ...+..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3447788889999999999999642 1222348889999999999999999998863 33578999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C---CHhHHHHHHHHH
Q 004114 421 GDAKALEEAKAVHEHVERLLSP---------LRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R---DLTSWDTMITGF 486 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~---------pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~---d~~tyn~LI~ay 486 (773)
...|++++|..+++.+++.... ....++..+..+|.+.|++++|+.+|+++.+ | +..+|..+...|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 9999999999999999885311 0123445568899999999999999999874 3 688999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHH
Q 004114 487 AKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEA 566 (773)
Q Consensus 487 ~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA 566 (773)
...|++++|+.+|+++.+.. ..+..++..+..+|...|++++|+.+|+++.+. .+.+..++..|..+|.+.|++++|
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998853 235778999999999999999999999998765 233478899999999999999999
Q ss_pred HHHHHhC-CCCC-------------CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004114 567 LEFIEKM-PMEP-------------DVDVWEKLMNLCRMHGNLELGDRCAEI 604 (773)
Q Consensus 567 ~~lf~~M-~~~P-------------d~~ty~~LI~a~~~~G~~e~A~~~~e~ 604 (773)
.+.|+++ .+.| +..+|..|..++...|+.+.+..+.+.
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999987 1111 367899999999999999887766543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-12 Score=136.57 Aligned_cols=250 Identities=12% Similarity=-0.011 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 350 GMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQAC 420 (773)
Q Consensus 350 ~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~ 420 (773)
...+..+...|.+.|++++|...+. ...+..+..+|.+.|++++|++.|+++.+.. +.+..++..+..++
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3456678889999999999998642 1222347888999999999999999998874 34778999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCHHHHHH---------------HHHHHHhCCChHHHHHHHHHhhc--C---CHhHHH
Q 004114 421 GDAKALEEAKAVHEHVERLLSPLRVSTYNG---------------ILKMYSECDSMDDAFSVFSNMTE--R---DLTSWD 480 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~pd~~tyna---------------LI~ay~k~G~l~eA~~lf~~M~~--~---d~~tyn 480 (773)
...|++++|...+..+++.... +...+.. .+..+.+.|++++|+.+|+++.+ | +..+|.
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 9999999999999999986432 2222211 24444488999999999998873 3 478899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhC
Q 004114 481 TMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST 560 (773)
Q Consensus 481 ~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~ 560 (773)
.+...|...|++++|+..|+++.... ..+..++..+..++...|++++|..+|+++.+. .+.+...+..+..+|.+.
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHC
Confidence 99999999999999999999998753 234678999999999999999999999998765 234577899999999999
Q ss_pred CCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004114 561 GYLDEALEFIEKM-PMEP------------DVDVWEKLMNLCRMHGNLELGDRCAEI 604 (773)
Q Consensus 561 G~l~eA~~lf~~M-~~~P------------d~~ty~~LI~a~~~~G~~e~A~~~~e~ 604 (773)
|++++|.+.|+++ .+.| ...+|..|..++...|+.++|..+.+.
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999887 1111 268999999999999999999887663
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-11 Score=137.16 Aligned_cols=280 Identities=9% Similarity=-0.000 Sum_probs=192.4
Q ss_pred HHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHH
Q 004114 329 RQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLG 399 (773)
Q Consensus 329 ~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~ 399 (773)
+.|+.+......+++.. |+..++..+..+|.+.|++++|...+. ...+..+..+|.+.|++++|+..|+
T Consensus 20 g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 97 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLS 97 (514)
T ss_dssp SCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45666666677676655 788888888888888899888888532 1222347788888899999999988
Q ss_pred HHHHCCCC------------------------------------------------------------------------
Q 004114 400 LLEKQCIS------------------------------------------------------------------------ 407 (773)
Q Consensus 400 ~M~~~Gv~------------------------------------------------------------------------ 407 (773)
++....-.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (514)
T 2gw1_A 98 VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF 177 (514)
T ss_dssp HHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCC
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHH
Confidence 88765421
Q ss_pred -----CC-HHHHHHHHHHHH---hcCCHHHHHHHHHHHHH-----hCC--------CCCHHHHHHHHHHHHhCCChHHHH
Q 004114 408 -----VD-LPTFSQLMQACG---DAKALEEAKAVHEHVER-----LLS--------PLRVSTYNGILKMYSECDSMDDAF 465 (773)
Q Consensus 408 -----Pd-~~ty~~LL~a~~---~~g~le~A~~l~~~m~k-----~G~--------~pd~~tynaLI~ay~k~G~l~eA~ 465 (773)
|+ ...+..+..++. +.|++++|..++..+++ ..- +.+..++..+..+|.+.|++++|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 257 (514)
T 2gw1_A 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257 (514)
T ss_dssp SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 00 122222222222 26778888888887777 211 223456777777788888888888
Q ss_pred HHHHHhh--cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCC
Q 004114 466 SVFSNMT--ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGI 543 (773)
Q Consensus 466 ~lf~~M~--~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi 543 (773)
.+|+++. .|+..+|..+...|...|++++|+..|+++.... ..+..++..+...+...|++++|..+|+.+.+. .
T Consensus 258 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~ 334 (514)
T 2gw1_A 258 EDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--D 334 (514)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--C
T ss_pred HHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--C
Confidence 8887765 2446677777788888888888888888877643 224556777777788888888888888777653 2
Q ss_pred CCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 544 VPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 544 ~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
+.+...+..+..+|.+.|++++|.++++++ ...| +..+|..+...+...|++++|...++.+.++.|.+.
T Consensus 335 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 335 PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 234567777777788888888888888776 2222 456777777788888888888888887777766553
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-11 Score=128.96 Aligned_cols=218 Identities=9% Similarity=-0.019 Sum_probs=117.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHH---------
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGI--------- 451 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaL--------- 451 (773)
+..++.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+++.... +...+..+
T Consensus 61 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 138 (327)
T 3cv0_A 61 LGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDD 138 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHH
Confidence 4555566666666666666665542 224555556666666666666666666666554211 11111111
Q ss_pred -----HH-HHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004114 452 -----LK-MYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACS 522 (773)
Q Consensus 452 -----I~-ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~ 522 (773)
.. .+.+.|++++|+.+|+++.+ .+..+|..+...|...|++++|+.+|+++.+.. ..+..++..+...+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 217 (327)
T 3cv0_A 139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLA 217 (327)
T ss_dssp -------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 11 24455566666666665542 245556666666666666666666666665532 123445566666666
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHHH
Q 004114 523 ALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-------------DVDVWEKLMNL 588 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-------------d~~ty~~LI~a 588 (773)
..|++++|..+|+++.+. .+.+...+..+..+|.+.|++++|.+.|+++ ...| +..+|..+..+
T Consensus 218 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 666666666666665443 1223455556666666666666666666554 1112 24555666666
Q ss_pred HHHcCChhHHHHHHH
Q 004114 589 CRMHGNLELGDRCAE 603 (773)
Q Consensus 589 ~~~~G~~e~A~~~~e 603 (773)
+...|+.+.|..+++
T Consensus 296 ~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 296 LNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHTTCHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHH
Confidence 666666666655544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-11 Score=128.78 Aligned_cols=230 Identities=10% Similarity=0.010 Sum_probs=191.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004114 377 GTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYS 456 (773)
Q Consensus 377 ~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~ 456 (773)
.+..+...+.+.|++++|+.+|+++.+.. +-+..++..+..++...|++++|...++.+++.. +.+..++..+..+|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34457788899999999999999998863 3377788889999999999999999999999874 447888999999999
Q ss_pred hCCChHHHHHHHHHhhcC---CHhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004114 457 ECDSMDDAFSVFSNMTER---DLTSWDTM--------------IT-GFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVF 518 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~~---d~~tyn~L--------------I~-ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL 518 (773)
+.|++++|+..|+++.+. +...+..+ .. .+...|++++|+.+++++.+... .+..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 999999999999988743 33333333 22 37778899999999999988642 3678899999
Q ss_pred HHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChh
Q 004114 519 SACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLE 596 (773)
Q Consensus 519 ~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e 596 (773)
..+...|++++|..++..+.+. .+.+...+..+..+|.+.|++++|.++|+++ ...| +..+|..+..++...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999998765 2345778999999999999999999999987 3334 5788999999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 004114 597 LGDRCAEIVEQLDPS 611 (773)
Q Consensus 597 ~A~~~~e~m~el~p~ 611 (773)
+|...++.+.++.|.
T Consensus 258 ~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999999999887
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-13 Score=154.71 Aligned_cols=218 Identities=15% Similarity=0.160 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhh----hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQ----NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAK 424 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~----~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g 424 (773)
+..+|+.|..++.+.|++++|.+.+. ...+..++.++...|++++|+..+...++. .+++.+.+.|+.+|++.|
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhC
Confidence 33467777777777777777776542 122234666667777777777755444432 344566667777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 425 ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 425 ~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
+++++.++++ .|+..+|..+.+.|...|++++|..+|..+ ..|..|+.++.+.|++++|++.+.++
T Consensus 109 ~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA-- 174 (449)
T 1b89_A 109 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-- 174 (449)
T ss_dssp CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH--
T ss_pred CHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc--
Confidence 7777666663 255557777777777777777777777766 36777777777777777777777666
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHH
Q 004114 505 AGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVW 582 (773)
Q Consensus 505 ~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty 582 (773)
-+..||..++.+|...|+++.|..+... +...+.....|+..|.+.|++++|..+++.. +.++ ...+|
T Consensus 175 ----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~f 244 (449)
T 1b89_A 175 ----NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 244 (449)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHH
T ss_pred ----CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHH
Confidence 2566777777777777777777443322 2223333445666777777777776666644 4433 35666
Q ss_pred HHHHHHHHHc
Q 004114 583 EKLMNLCRMH 592 (773)
Q Consensus 583 ~~LI~a~~~~ 592 (773)
+-|--++++.
T Consensus 245 tel~il~~ky 254 (449)
T 1b89_A 245 TELAILYSKF 254 (449)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 6666666655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-11 Score=122.88 Aligned_cols=218 Identities=12% Similarity=0.034 Sum_probs=185.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCC----HHHHHHHH
Q 004114 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS--PLR----VSTYNGIL 452 (773)
Q Consensus 379 ~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~--~pd----~~tynaLI 452 (773)
..+...+...|++++|+.+|.++.+.. .+..++..+..++...|++++|...+..+++... .++ ..++..+.
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 347778889999999999999999887 7888999999999999999999999999888632 122 57889999
Q ss_pred HHHHhCCChHHHHHHHHHhhc--CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHH
Q 004114 453 KMYSECDSMDDAFSVFSNMTE--RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVE 529 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~~M~~--~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~de 529 (773)
.+|.+.|++++|+..|+++.+ ++ ...+...|++++|+..++++... .|+ ...+..+...+...|++++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHH
Confidence 999999999999999998874 44 24567778999999999999885 343 4577888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 530 GMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 530 A~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
|..+|+++.+. .+.+..++..+..+|.+.|++++|.+.|++. ...| +..+|..+..++...|+++.|...++...+
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999998775 2346788999999999999999999999887 3334 478899999999999999999999999998
Q ss_pred cC
Q 004114 608 LD 609 (773)
Q Consensus 608 l~ 609 (773)
+.
T Consensus 236 ~~ 237 (258)
T 3uq3_A 236 KD 237 (258)
T ss_dssp HH
T ss_pred hC
Confidence 87
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-10 Score=129.59 Aligned_cols=219 Identities=9% Similarity=0.027 Sum_probs=162.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 389 GKVKEAIEVLGLLEKQCISVD--------LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 389 G~~~eAl~lf~~M~~~Gv~Pd--------~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
|++++|+.+|+++.+. .|+ ..++..+...+...|++++|..++..+++.. |+..++..+...|.+.|+
T Consensus 216 ~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcC
Confidence 3566777777776654 333 2345556666777888889999888888864 457778888888888899
Q ss_pred hHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 461 l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
+++|+.+|+++.+ .+..+|..+...|...|++++|+..|+++.+... -+..++..+..++...|++++|..++..+
T Consensus 292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988887763 3677888888888889999999999988877532 23467788888888889999999888888
Q ss_pred HHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHHc----------CChhHHH
Q 004114 538 SKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM----P----MEPDVDVWEKLMNLCRMH----------GNLELGD 599 (773)
Q Consensus 538 ~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M----~----~~Pd~~ty~~LI~a~~~~----------G~~e~A~ 599 (773)
.+. .+.+...+..+..+|.+.|++++|.+.|+++ + ..-....+..+..++... |++++|.
T Consensus 371 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~ 448 (537)
T 3fp2_A 371 KLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448 (537)
T ss_dssp HHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred HHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHH
Confidence 765 2345667888888888899999988888876 1 111233344455666666 8888888
Q ss_pred HHHHHHHHcCCCCch
Q 004114 600 RCAEIVEQLDPSRLN 614 (773)
Q Consensus 600 ~~~e~m~el~p~~~~ 614 (773)
..++.+.++.|.+..
T Consensus 449 ~~~~~a~~~~p~~~~ 463 (537)
T 3fp2_A 449 KLLTKACELDPRSEQ 463 (537)
T ss_dssp HHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhCCCCHH
Confidence 888888888888753
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.38 E-value=9.2e-11 Score=118.72 Aligned_cols=195 Identities=11% Similarity=0.041 Sum_probs=110.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCCh
Q 004114 416 LMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLG 492 (773)
Q Consensus 416 LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~ 492 (773)
+...+...|++++|..+++.+++.. +.+..++..+..+|.+.|++++|+++|+++.+ .+..+|..+...|...|++
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 121 (252)
T 2ho1_A 43 LGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRY 121 (252)
T ss_dssp HHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHH
Confidence 3333344444444444444444332 12334444444455555555555555544432 1444555555555566666
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHH
Q 004114 493 EDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIE 571 (773)
Q Consensus 493 deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~ 571 (773)
++|+++|+++...+..|+ ...+..+..++...|++++|..+|.++.+. .+.+...+..+..+|.+.|++++|.++++
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666665554323343 334555556666666666666666665543 12235566667777777777777777776
Q ss_pred hC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 572 KM-PME-PDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 572 ~M-~~~-Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
++ ... .+...+..+...+...|+.+.|.+.++.+.++.|+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 200 LFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 65 222 3456677777777778888888888888877777764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-13 Score=153.64 Aligned_cols=232 Identities=12% Similarity=0.072 Sum_probs=106.2
Q ss_pred hcCChhHHHHhhhh----ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004114 362 HEDDFAEASRSSQN----NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVE 437 (773)
Q Consensus 362 k~g~~~~A~~v~~~----~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~ 437 (773)
+.|++++|.+++.. ..+..|..++.+.|++++|++.|.+. +|..+|..++.+|...|++++|...+...+
T Consensus 15 ~~~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 77888888886432 23334899999999999999999753 588899999999999999999999888777
Q ss_pred HhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004114 438 RLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGV 517 (773)
Q Consensus 438 k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~L 517 (773)
+. .+++.+.+.|+.+|+|+|++++++++|+ .|+..+|+.+...|...|++++|..+|..+ ..|..|
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 74 4567889999999999999999998885 478889999999999999999999999977 379999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 004114 518 FSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLEL 597 (773)
Q Consensus 518 L~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~ 597 (773)
..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+.+.|+. ...|+..|.+.|.+++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCHHH
T ss_pred HHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCHHH
Confidence 99999999999999999877 26789999999999999999998877766545544 4469999999999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHcCCc
Q 004114 598 GDRCAEIVEQLDPSRLNEKSKAGLV 622 (773)
Q Consensus 598 A~~~~e~m~el~p~~~~~y~~aG~~ 622 (773)
|..+++....+++....++...+.+
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il 250 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAIL 250 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999998776555544443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-11 Score=128.89 Aligned_cols=220 Identities=9% Similarity=0.002 Sum_probs=178.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDL--PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~--~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
|.-....|++.+|+..+++... ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...|.+.+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4556678999999998876543 34443 3556678899999999999986644 24567788999999999999
Q ss_pred ChHHHHHHHHHhhc----C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 004114 460 SMDDAFSVFSNMTE----R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 460 ~l~eA~~lf~~M~~----~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if 534 (773)
+.++|++.|+++.. | +...+..+...|...|++++|+++|++ ..+..++..+...+.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999852 4 566777778999999999999999987 457788999999999999999999999
Q ss_pred HHHHHhcCCCCCcchh---hhHHHHHHhCCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 535 ESMSKDYGIVPSMKHY---VSIVDMLGSTGYLDEALEFIEKM--PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 535 ~~M~~~~Gi~Pd~~ty---n~LI~~y~r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
+.+.+. .|+.... .+++..+...|++++|..+|+++ ....+..+|..+..++...|++++|+..++.+.+++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999775 3654211 23445555679999999999998 223578899999999999999999999999999999
Q ss_pred CCCchHH
Q 004114 610 PSRLNEK 616 (773)
Q Consensus 610 p~~~~~y 616 (773)
|+++..+
T Consensus 231 p~~~~~l 237 (291)
T 3mkr_A 231 SGHPETL 237 (291)
T ss_dssp TTCHHHH
T ss_pred CCCHHHH
Confidence 9997543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=7.5e-11 Score=120.37 Aligned_cols=223 Identities=9% Similarity=-0.029 Sum_probs=184.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChH
Q 004114 386 VKEGKVKEAIEVLGLLEKQCISV---DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMD 462 (773)
Q Consensus 386 ~~~G~~~eAl~lf~~M~~~Gv~P---d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~ 462 (773)
...|++++|+..|+++.+..... +..++..+..++...|++++|...+..+++.. +.+..++..+..+|.+.|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 35688999999999998864221 45678888999999999999999999999875 346889999999999999999
Q ss_pred HHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 463 DAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 463 eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
+|+..|+++.+ | +..+|..+...|...|++++|+..|+++.+. .|+......++..+...|++++|..++.....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999998874 3 6789999999999999999999999999884 46655555566666778999999999988766
Q ss_pred hcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 540 DYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-----VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 540 ~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-----~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
. .+++...+ .++..+...++.++|.+.+++. ...|. ..+|..+..++...|++++|...++.+.++.|.+.
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 5 33444444 4778888889999999999876 33332 57888999999999999999999999999999775
Q ss_pred h
Q 004114 614 N 614 (773)
Q Consensus 614 ~ 614 (773)
.
T Consensus 250 ~ 250 (275)
T 1xnf_A 250 V 250 (275)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-10 Score=113.37 Aligned_cols=202 Identities=10% Similarity=-0.023 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHH
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGF 486 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay 486 (773)
..++..+...+...|++++|..++..+++.. +.+..++..+..+|...|++++|..+|+++.+ .+..+|..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3456666666777777777777777776653 23466777777777777777777777776653 2566777777778
Q ss_pred HHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHH
Q 004114 487 AKN-GLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564 (773)
Q Consensus 487 ~~~-G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~ 564 (773)
... |++++|+.+|+++.+.+..|+ ..++..+..++...|++++|..++.++.+. .+.+...+..+..+|.+.|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHH
Confidence 888 888888888888776333344 456677777788888888888888877654 2234667777888888888888
Q ss_pred HHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch
Q 004114 565 EALEFIEKM-PME--PDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN 614 (773)
Q Consensus 565 eA~~lf~~M-~~~--Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~ 614 (773)
+|.++++++ ... .+...+..+...+...|+.+.|...++.+.++.|+++.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 888888776 222 35667777777788888888888888888888887753
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-10 Score=119.31 Aligned_cols=239 Identities=13% Similarity=0.062 Sum_probs=185.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHH
Q 004114 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR--VSTYNGILKMYS 456 (773)
Q Consensus 379 ~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd--~~tynaLI~ay~ 456 (773)
......+.+.|++++|+.+|.+..+... -+..++..+..++...|++++|...+..+++....++ ..+|..+..+|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3466778899999999999999987632 2444788888899999999999999999988432222 445888999999
Q ss_pred hCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHH
Q 004114 457 ECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGML 532 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~ 532 (773)
+.|++++|+..|++..+ .+..+|..+...|...|++++|+..|++..+. .|+ ..++..+...+...+++++|..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998874 36688999999999999999999999988775 444 4555555525555669999999
Q ss_pred HHHHHHHhcCCCCCcchhhhHHHHHHhCCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHHcCChhHHH
Q 004114 533 HFESMSKDYGIVPSMKHYVSIVDMLGSTGY---LDEALEFIEKM----PMEPD------VDVWEKLMNLCRMHGNLELGD 599 (773)
Q Consensus 533 if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~---l~eA~~lf~~M----~~~Pd------~~ty~~LI~a~~~~G~~e~A~ 599 (773)
+|+.+.+. .+.+...+..+..++...|+ .++|...+++. .-.|+ ..+|..|...|...|++++|.
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998765 22345677778888888787 66677776655 11233 357888888999999999999
Q ss_pred HHHHHHHHcCCCCchHHHHcCCc
Q 004114 600 RCAEIVEQLDPSRLNEKSKAGLV 622 (773)
Q Consensus 600 ~~~e~m~el~p~~~~~y~~aG~~ 622 (773)
..++.+.+++|++..+....+.+
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHHHHhcCccHHHHHHHhhhh
Confidence 99999999999997666555544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=8.5e-11 Score=117.67 Aligned_cols=208 Identities=14% Similarity=0.112 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHH
Q 004114 411 PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFA 487 (773)
Q Consensus 411 ~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~ 487 (773)
.+|..+...+...|++++|..+++.+++.. +.+..++..+..+|.+.|++++|+..|+++.+ .+..+|..+...|.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 344444445555555666666655555532 22455555566666666666666666665542 24556666666666
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHH
Q 004114 488 KNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEAL 567 (773)
Q Consensus 488 ~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~ 567 (773)
..|++++|+.+|+++.+.. ..+..++..+...+...|++++|..+++++.+. .+.+...+..+..+|.+.|++++|.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666666542 224455666666666777777777777666553 2234556667777777777777777
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcCCc
Q 004114 568 EFIEKM-PME-PDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGLV 622 (773)
Q Consensus 568 ~lf~~M-~~~-Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG~~ 622 (773)
++|+++ ... .+..+|..+..++...|++++|...++.+.++.|++..++...+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 777765 222 3467888888889999999999999999999988886655444443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.31 E-value=7.2e-10 Score=124.68 Aligned_cols=231 Identities=12% Similarity=0.044 Sum_probs=190.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
+...+...|++++|+..|.++.+. .|+..++..+..++...|++++|..++..+++.. +.+..++..+..+|.+.|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 556788899999999999999886 5667888899999999999999999999999875 3468889999999999999
Q ss_pred hHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 461 l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
+++|+..|+++.+ | +..+|..+...|...|++++|+.+|+++.+.. ..+..++..+..++...|++++|..+|+.+
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999998873 3 67789999999999999999999999998863 234568888999999999999999999987
Q ss_pred HHhcCCCCC----cchhhhHHHHHHhC----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHH
Q 004114 538 SKDYGIVPS----MKHYVSIVDMLGST----------GYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRC 601 (773)
Q Consensus 538 ~~~~Gi~Pd----~~tyn~LI~~y~r~----------G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~ 601 (773)
.+...-.++ ...+..+..+|.+. |++++|.+.|++. ...| +..+|..+...+...|++++|...
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 654211111 11233345667777 9999999999987 3334 578899999999999999999999
Q ss_pred HHHHHHcCCCCchH
Q 004114 602 AEIVEQLDPSRLNE 615 (773)
Q Consensus 602 ~e~m~el~p~~~~~ 615 (773)
++.+.++.|.....
T Consensus 485 ~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 485 FEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHC--CHHH
T ss_pred HHHHHHhCCCcHHH
Confidence 99999999987543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.29 E-value=5e-10 Score=113.26 Aligned_cols=197 Identities=8% Similarity=-0.013 Sum_probs=165.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
.+...+...|++++|+++|+++.+.. ..+..++..+..++...|++++|.+++..+++.. +.+..++..+..+|.+.|
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHh
Confidence 46778889999999999999988763 3467788899999999999999999999999875 346788999999999999
Q ss_pred ChHHHHHHHHHhhc----C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 004114 460 SMDDAFSVFSNMTE----R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 460 ~l~eA~~lf~~M~~----~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if 534 (773)
++++|+++|+++.+ | +...|..+...|...|++++|+..|+++.+.. ..+..++..+...+...|++++|..++
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999875 3 45678889999999999999999999998754 235778889999999999999999999
Q ss_pred HHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHH
Q 004114 535 ESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDV 581 (773)
Q Consensus 535 ~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~t 581 (773)
+.+.+. .+.+...+..+...|.+.|+.++|.++++++ ...|+...
T Consensus 199 ~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 199 DLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 988653 3345677888999999999999999999887 33454333
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.5e-10 Score=108.16 Aligned_cols=201 Identities=9% Similarity=-0.006 Sum_probs=164.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC-
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC- 458 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~- 458 (773)
.+...+...|++++|+++|.++.+.. +.+..++..+..++...|++++|..+++.+++.. +.+..++..+..+|.+.
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhc
Confidence 36778888899999999999888763 3357788889999999999999999999998874 34678899999999999
Q ss_pred CChHHHHHHHHHhhc--C---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 004114 459 DSMDDAFSVFSNMTE--R---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLH 533 (773)
Q Consensus 459 G~l~eA~~lf~~M~~--~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~i 533 (773)
|++++|+.+|+++.+ . +...|..+...|...|++++|+..|+++.+.. ..+..++..+..++...|++++|..+
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYY 169 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998876 2 25788899999999999999999999998753 22467888889999999999999999
Q ss_pred HHHHHHhcCCC-CCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 004114 534 FESMSKDYGIV-PSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKL 585 (773)
Q Consensus 534 f~~M~~~~Gi~-Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~L 585 (773)
++.+.+. .+ .+...+..+...+...|+.++|..+++.+ ...|+......+
T Consensus 170 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 170 FKKYQSR--VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHh--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9988765 22 45667788888889999999999999887 345654444333
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=4e-09 Score=108.75 Aligned_cols=219 Identities=13% Similarity=-0.000 Sum_probs=186.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGD----AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYS 456 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~----~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~ 456 (773)
+-..|...|++++|++.|.+..+.+ +...+..+-..+.. .+++++|...|.+..+.+ +...+..|-.+|.
T Consensus 12 lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 85 (273)
T 1ouv_A 12 LGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYY 85 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHh
Confidence 5667778899999999999988843 56778888888888 999999999999999876 7788889999999
Q ss_pred h----CCChHHHHHHHHHhhcC-CHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----
Q 004114 457 E----CDSMDDAFSVFSNMTER-DLTSWDTMITGFAK----NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA---- 523 (773)
Q Consensus 457 k----~G~l~eA~~lf~~M~~~-d~~tyn~LI~ay~~----~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~---- 523 (773)
. .+++++|+..|++..+. +..++..|-..|.. .+++++|+..|++..+.+ +..++..+-..+..
T Consensus 86 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 86 SGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGT 162 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCC
Confidence 9 99999999999988754 77889999999999 999999999999999876 56677777777877
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHh----CCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH----cCC
Q 004114 524 LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGS----TGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRM----HGN 594 (773)
Q Consensus 524 ~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r----~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~----~G~ 594 (773)
.++.++|..+|++..+. + +...+..|..+|.. .+++++|.+.|++. ... +...+..|-..|.. .++
T Consensus 163 ~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~ 237 (273)
T 1ouv_A 163 PKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNGEGVTRN 237 (273)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCC
T ss_pred CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccC
Confidence 89999999999988664 3 45778888899999 99999999999876 322 36778888888888 899
Q ss_pred hhHHHHHHHHHHHcCCCCc
Q 004114 595 LELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 595 ~e~A~~~~e~m~el~p~~~ 613 (773)
+++|...++...++.|.+.
T Consensus 238 ~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 238 EKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp STTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHH
Confidence 9999999999999987653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-09 Score=108.51 Aligned_cols=211 Identities=11% Similarity=0.044 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHhhhh--------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 004114 351 MMASQVLNNCKHEDDFAEASRSSQN--------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQC--ISVD----LPTFSQL 416 (773)
Q Consensus 351 ~~~n~LI~~y~k~g~~~~A~~v~~~--------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~G--v~Pd----~~ty~~L 416 (773)
.++..+-..|...|++++|...+.. ..+..+..+|...|++++|++.|.+..+.. ..++ ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4566788888999999999986421 222347888999999999999999987643 1223 5788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChH
Q 004114 417 MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGE 493 (773)
Q Consensus 417 L~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~d 493 (773)
..++...|++++|...+..+++.. |+. ..+.+.|++++|...|+++... +...|..+...|...|+++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 999999999999999999999864 443 4566778999999999998754 4567889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 494 DAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 494 eAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+|+..|++..+.. ..+..++..+..++...|++++|..+|+...+. .+.+...|..+..+|.+.|++++|.+.|++.
T Consensus 157 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 157 NAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999998854 235778999999999999999999999998765 2345778889999999999999999999876
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-09 Score=109.96 Aligned_cols=187 Identities=13% Similarity=0.047 Sum_probs=134.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC--
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC-- 458 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~-- 458 (773)
+-..+.+.|++++|+..|++..+.. +-+...+..+..++.+.|++++|...++..++.. +-+...+..+..+|.+.
T Consensus 11 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 88 (217)
T 2pl2_A 11 LGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYR 88 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhh
Confidence 5567778888888888888887653 2356677788888888888888888888888864 33567788888888888
Q ss_pred ---------CChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 459 ---------DSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 459 ---------G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
|++++|+..|++..+ | +...|..+-..|...|++++|+..|++..+.. .+...+..+..++...|+
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~ 166 (217)
T 2pl2_A 89 QAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGR 166 (217)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTC
T ss_pred hhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCC
Confidence 888888888887763 3 56778888888888888888888888888776 677778888888888888
Q ss_pred hHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 527 VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 527 ~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+++|+..|+...+. -+-+...+..+..++.+.|++++|.+.|++.
T Consensus 167 ~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 167 LDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888887654 2234567777778888888888888877764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=8e-10 Score=110.51 Aligned_cols=199 Identities=14% Similarity=0.122 Sum_probs=152.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|..++..+++.. +.+..++..+..+|.+.|+
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp -------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhcc
Confidence 5667778888999999999888753 3367788888889999999999999999998874 3467888899999999999
Q ss_pred hHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 461 l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
+++|+++|+++.+ .+...|..+...|...|++++|+.+++++.+.. ..+..++..+..++...|++++|..+|..+
T Consensus 107 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998763 477889999999999999999999999988753 235678888888999999999999999988
Q ss_pred HHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 004114 538 SKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEK 584 (773)
Q Consensus 538 ~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~ 584 (773)
.+. .+.+..++..+..+|.+.|++++|.+.++++ ...|+ ..++..
T Consensus 186 ~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 186 TEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence 765 2345678888999999999999999999887 33343 444433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-09 Score=111.01 Aligned_cols=218 Identities=11% Similarity=0.075 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 392 KEAIEVLGLLEKQCISVDLPTFSQLMQACG-------DAKAL-------EEAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 392 ~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~-------~~g~l-------e~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
++|+.+|++.+... +-+...|..+...+. +.|++ ++|+.+|+..++.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888898888752 336667777776665 35775 8999999999884223466789999999999
Q ss_pred CCChHHHHHHHHHhhc--C-CHh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HcCCChHHHHH
Q 004114 458 CDSMDDAFSVFSNMTE--R-DLT-SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSAC-SALGDVVEGML 532 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~--~-d~~-tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~-~~~G~~deA~~ 532 (773)
.|++++|..+|++..+ | +.. .|..+...+.+.|++++|..+|++..+... ++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999875 3 343 899999999999999999999999987542 3344454443332 23799999999
Q ss_pred HHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004114 533 HFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-P---MEP--DVDVWEKLMNLCRMHGNLELGDRCAEIVE 606 (773)
Q Consensus 533 if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~---~~P--d~~ty~~LI~a~~~~G~~e~A~~~~e~m~ 606 (773)
+|+...+.. +-+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++.+.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999987752 335788899999999999999999999987 2 354 47799999999999999999999999999
Q ss_pred HcCCCCc
Q 004114 607 QLDPSRL 613 (773)
Q Consensus 607 el~p~~~ 613 (773)
++.|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 9999764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-09 Score=110.11 Aligned_cols=193 Identities=14% Similarity=0.124 Sum_probs=149.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHH
Q 004114 407 SVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMI 483 (773)
Q Consensus 407 ~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI 483 (773)
+++...+..+-.++.+.|++++|...++..++.. +.+...+..+..+|.+.|++++|+..|++..+ | +...|..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4566778888888999999999999999988864 34678888999999999999999999998763 4 677888999
Q ss_pred HHHHHc-----------CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhh
Q 004114 484 TGFAKN-----------GLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYV 551 (773)
Q Consensus 484 ~ay~~~-----------G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn 551 (773)
..|... |++++|+..|++..+. .|+ ..++..+-.++...|++++|+..|++..+. . .+...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~ 155 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHH
Confidence 999999 9999999999998875 454 567788888899999999999999998776 3 6778888
Q ss_pred hHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004114 552 SIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIV 605 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m 605 (773)
.+..+|...|++++|.+.|++. ...| +...+..+..++...|++++|...++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999887 3344 5778888888999999999888777654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-09 Score=117.50 Aligned_cols=231 Identities=10% Similarity=0.057 Sum_probs=188.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKA-LEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~-le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
+-..+.+.|++++|+++|++.++.. .-+..+|..+-.++...|+ +++|+..++.+++... -+..+|..+-.+|.+.|
T Consensus 103 lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g 180 (382)
T 2h6f_A 103 FRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLR 180 (382)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcc
Confidence 3445667788889999999988763 2256788889999999996 9999999999999753 37889999999999999
Q ss_pred ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-CCChHHH-----
Q 004114 460 SMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA-LGDVVEG----- 530 (773)
Q Consensus 460 ~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~-~G~~deA----- 530 (773)
++++|+..|+++.+ .+...|..+..++.+.|++++|+..|+++++.... +...|..+-.++.. .|..++|
T Consensus 181 ~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 181 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 99999999998874 37889999999999999999999999999986432 56788888888888 6665777
Q ss_pred HHHHHHHHHhcCCCC-CcchhhhHHHHHHhCC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC---------ChhH
Q 004114 531 MLHFESMSKDYGIVP-SMKHYVSIVDMLGSTG--YLDEALEFIEKMPMEPD-VDVWEKLMNLCRMHG---------NLEL 597 (773)
Q Consensus 531 ~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G--~l~eA~~lf~~M~~~Pd-~~ty~~LI~a~~~~G---------~~e~ 597 (773)
+..|.+..+. .| +...|..+..+|.+.| ++++|.+++.++...|+ ...+..|...|.+.| .+++
T Consensus 260 l~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~ 336 (382)
T 2h6f_A 260 VQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 336 (382)
T ss_dssp HHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 4777776553 45 4678888888899888 68999999988854554 678888998988874 2588
Q ss_pred HHHHHHHH-HHcCCCCchHHH
Q 004114 598 GDRCAEIV-EQLDPSRLNEKS 617 (773)
Q Consensus 598 A~~~~e~m-~el~p~~~~~y~ 617 (773)
|..+++.+ .+++|.....+.
T Consensus 337 A~~~~~~l~~~~DP~r~~~w~ 357 (382)
T 2h6f_A 337 ALELCEILAKEKDTIRKEYWR 357 (382)
T ss_dssp HHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHH
Confidence 99999999 899997755443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.12 E-value=8.8e-09 Score=105.08 Aligned_cols=230 Identities=10% Similarity=-0.040 Sum_probs=178.7
Q ss_pred HHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 004114 353 ASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVD--LPTFSQLMQACG 421 (773)
Q Consensus 353 ~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd--~~ty~~LL~a~~ 421 (773)
.-.+...+...|++++|..++. ...+..+..+|.+.|++++|++.|.+..+..-.|+ ..+|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3456677888999999998642 22334578899999999999999999988442222 345888999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHH
Q 004114 422 DAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDI 498 (773)
Q Consensus 422 ~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~L 498 (773)
..|++++|...+...++... .+..++..+..+|.+.|++++|+..|++..+ | +..+|..+...+...+++++|++.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998743 3567899999999999999999999999874 3 667777777344445699999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHcCCC---hHHHHHHHHHHHHhcCCCCCc------chhhhHHHHHHhCCCHHHHHH
Q 004114 499 FSQFKQAGLKPD-DQIFIGVFSACSALGD---VVEGMLHFESMSKDYGIVPSM------KHYVSIVDMLGSTGYLDEALE 568 (773)
Q Consensus 499 f~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~---~deA~~if~~M~~~~Gi~Pd~------~tyn~LI~~y~r~G~l~eA~~ 568 (773)
|+++.+. .|+ ...+..+..++...++ .++|...+++..+...-.|+. ..|..|...|.+.|++++|.+
T Consensus 165 ~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999885 344 5677777788888888 888998888876653333442 577888999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHH
Q 004114 569 FIEKM-PMEPD-VDVWEKL 585 (773)
Q Consensus 569 lf~~M-~~~Pd-~~ty~~L 585 (773)
.|++. .+.|+ ...+..+
T Consensus 243 ~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhcCccHHHHHHHh
Confidence 99987 44454 4444444
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-09 Score=113.23 Aligned_cols=231 Identities=11% Similarity=0.072 Sum_probs=154.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CC-CCCHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQ-------CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL------LS-PLRVS 446 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~-------Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~------G~-~pd~~ 446 (773)
+...|...|++++|+.+|.++.+. .......++..+...+...|++++|..++..+++. +- +....
T Consensus 33 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (311)
T 3nf1_A 33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAA 112 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 445555556666666666555542 22224557778888889999999999999988775 22 22356
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc-------C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE-------R----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA------GLKP 509 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~-------~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~------Gv~P 509 (773)
++..+..+|...|++++|+.+|+++.+ + ...+|..+...|...|++++|+++|+++... +..|
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 788889999999999999999987763 1 3456888889999999999999999998774 2233
Q ss_pred C-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhc------CCCCCcchhhhHH-------HHHHhCCCHHHHHHHHHhCC-
Q 004114 510 D-DQIFIGVFSACSALGDVVEGMLHFESMSKDY------GIVPSMKHYVSIV-------DMLGSTGYLDEALEFIEKMP- 574 (773)
Q Consensus 510 d-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~------Gi~Pd~~tyn~LI-------~~y~r~G~l~eA~~lf~~M~- 574 (773)
+ ..++..+..++...|++++|..+++++.+.. ...+........+ ..+...+.+.+|...+....
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 272 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC
Confidence 3 3467888889999999999999998876521 1222222222222 22333444555555555552
Q ss_pred CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 575 MEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 575 ~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
..| ...+|..|..+|...|++++|...++...++.|.
T Consensus 273 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 233 3568889999999999999999999998887654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=7.1e-08 Score=99.31 Aligned_cols=212 Identities=11% Similarity=0.025 Sum_probs=177.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhh-------hccHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQ-------NNGTLEQLDGLVK----EGKVKEAIEVLGLLEKQCISVDLPTFSQLM 417 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~-------~~~~~~LI~a~~~----~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL 417 (773)
+..++..+-..|...|++++|...+. ...+..+-..|.. .+++++|++.|.+..+.+ +...+..+-
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 34566677788888999999988642 1122236677888 999999999999999886 778888888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHhhcC-CHhHHHHHHHHHHH
Q 004114 418 QACGD----AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE----CDSMDDAFSVFSNMTER-DLTSWDTMITGFAK 488 (773)
Q Consensus 418 ~a~~~----~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k----~G~l~eA~~lf~~M~~~-d~~tyn~LI~ay~~ 488 (773)
..+.. .+++++|...++...+.+ +...+..|-.+|.+ .++.++|+..|++..+. +..++..+-..|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 88988 999999999999999875 77889999999999 99999999999987754 67788888888988
Q ss_pred ----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHh-
Q 004114 489 ----NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA----LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGS- 559 (773)
Q Consensus 489 ----~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~----~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r- 559 (773)
.+++++|+..|++..+.+ +...+..+-..+.. .+++++|+.+|+...+. + +...+..|-.+|.+
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYNG 231 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcC
Confidence 999999999999998875 45777888888888 99999999999988664 3 26677788888888
Q ss_pred ---CCCHHHHHHHHHhC
Q 004114 560 ---TGYLDEALEFIEKM 573 (773)
Q Consensus 560 ---~G~l~eA~~lf~~M 573 (773)
.+++++|.+.|++.
T Consensus 232 ~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKG 248 (273)
T ss_dssp SSSSCCSTTHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHH
Confidence 99999999999875
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=5.4e-09 Score=106.49 Aligned_cols=214 Identities=10% Similarity=-0.130 Sum_probs=160.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
.+...|...|++++|+..|+++.+.. +.+..+|..+..++...|++++|...++.+++.. +.+..++..+..+|.+.|
T Consensus 48 ~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g 125 (275)
T 1xnf_A 48 ERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGG 125 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhc
Confidence 36677788888888888898888763 3367889999999999999999999999999874 335778999999999999
Q ss_pred ChHHHHHHHHHhhc--CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 460 SMDDAFSVFSNMTE--RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 460 ~l~eA~~lf~~M~~--~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
++++|+.+|+++.+ |+...+..++..+...|++++|+.+|.+..... .++...+ .++..+...++.++|...+..+
T Consensus 126 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 126 RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKAD 203 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999998873 544455555566677899999999998877653 3343344 3666777888888898888766
Q ss_pred HHhcCCCCC-----cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 004114 538 SKDYGIVPS-----MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRCA 602 (773)
Q Consensus 538 ~~~~Gi~Pd-----~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~ 602 (773)
.+ ..|. ...+..+..+|.+.|++++|.+.|++. ...|+. +.....++...|++++|...+
T Consensus 204 ~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 204 AT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred hc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 32 2232 577888999999999999999999987 555632 222344566667777665554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.2e-09 Score=115.46 Aligned_cols=257 Identities=11% Similarity=-0.022 Sum_probs=187.6
Q ss_pred HHHHHHHHhcCChhHHHHhhhh-------------ccHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHH
Q 004114 354 SQVLNNCKHEDDFAEASRSSQN-------------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQ----CISV-DLPTFSQ 415 (773)
Q Consensus 354 n~LI~~y~k~g~~~~A~~v~~~-------------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~----Gv~P-d~~ty~~ 415 (773)
..+-..+...|++++|...+.. ..+..+...|...|++++|++.|++..+. +-.| ...++..
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3555677788888888885311 12224677888899999999999887653 1112 3356777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh----CC-CCCHHHHHHHHHHHHhCCC-----------------hHHHHHHHHHhhc
Q 004114 416 LMQACGDAKALEEAKAVHEHVERL----LS-PLRVSTYNGILKMYSECDS-----------------MDDAFSVFSNMTE 473 (773)
Q Consensus 416 LL~a~~~~g~le~A~~l~~~m~k~----G~-~pd~~tynaLI~ay~k~G~-----------------l~eA~~lf~~M~~ 473 (773)
+...+...|++++|...+.++++. +- .....++..+...|...|+ +++|+..|++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 888888999999999999887765 21 1234577888889999999 8999888877642
Q ss_pred -----C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 474 -----R----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL-KPD----DQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 474 -----~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv-~Pd----~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
. ...+|..+...|...|++++|+..|++..+... .++ ..++..+..++...|++++|..++++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 235788888999999999999999988765311 112 23678888889999999999999987654
Q ss_pred hcCCCC----CcchhhhHHHHHHhCCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 540 DYGIVP----SMKHYVSIVDMLGSTGYLDEALEFIEKM-------PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 540 ~~Gi~P----d~~tyn~LI~~y~r~G~l~eA~~lf~~M-------~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
...-.. ...++..+..+|.+.|++++|.+++++. +..+ ...++..|..++...|++++|...++...+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 311111 1467778888999999999999998876 1111 145777888899999999999999998887
Q ss_pred cCC
Q 004114 608 LDP 610 (773)
Q Consensus 608 l~p 610 (773)
+.+
T Consensus 372 ~~~ 374 (411)
T 4a1s_A 372 LAX 374 (411)
T ss_dssp HCC
T ss_pred HHh
Confidence 754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.2e-09 Score=106.98 Aligned_cols=256 Identities=11% Similarity=-0.039 Sum_probs=179.5
Q ss_pred HHHHHHHhcCChhHHHHhhhh-------------ccHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHH
Q 004114 355 QVLNNCKHEDDFAEASRSSQN-------------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQ----CISV-DLPTFSQL 416 (773)
Q Consensus 355 ~LI~~y~k~g~~~~A~~v~~~-------------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~----Gv~P-d~~ty~~L 416 (773)
..-..+...|++++|...+.. ..+..+...|...|++++|++.+.+..+. +-.| ...++..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344566677788877775311 11223677788888999998888876543 2111 24467777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCC-CCC----HHHHHHHHHHHHhCCC--------------------hHHHHHHHHHh
Q 004114 417 MQACGDAKALEEAKAVHEHVERLLS-PLR----VSTYNGILKMYSECDS--------------------MDDAFSVFSNM 471 (773)
Q Consensus 417 L~a~~~~g~le~A~~l~~~m~k~G~-~pd----~~tynaLI~ay~k~G~--------------------l~eA~~lf~~M 471 (773)
...+...|++++|...+.+.++... ..+ ..++..+...|...|+ +++|+..|++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7888889999999999888766411 112 3477788888888898 88888888776
Q ss_pred hc-----C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 472 TE-----R----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL-KPD----DQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 472 ~~-----~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv-~Pd----~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
.+ . ...+|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..++++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 42 1 234678888889999999999999988765311 112 236777888888999999999888876
Q ss_pred HHhcCCCCC----cchhhhHHHHHHhCCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004114 538 SKDYGIVPS----MKHYVSIVDMLGSTGYLDEALEFIEKM----PMEPD----VDVWEKLMNLCRMHGNLELGDRCAEIV 605 (773)
Q Consensus 538 ~~~~Gi~Pd----~~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd----~~ty~~LI~a~~~~G~~e~A~~~~e~m 605 (773)
.+...-..+ ..++..+...|...|++++|.+.+++. +-..+ ..++..+...+...|++++|...++..
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 543111111 456777888899999999999988776 10112 447778888899999999999999888
Q ss_pred HHcCC
Q 004114 606 EQLDP 610 (773)
Q Consensus 606 ~el~p 610 (773)
.++.+
T Consensus 330 ~~~~~ 334 (338)
T 3ro2_A 330 LEISR 334 (338)
T ss_dssp HHC--
T ss_pred HHHHH
Confidence 87754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-08 Score=95.15 Aligned_cols=165 Identities=9% Similarity=0.033 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004114 446 STYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACS 522 (773)
Q Consensus 446 ~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~ 522 (773)
..+..+...|...|++++|+.+|+++.+ .+..+|..+...|...|++++|+.+|+++.+.. ..+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4566677778888888888888887764 266778888888888888888888888887652 235667777888888
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHH
Q 004114 523 ALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PM-EPDVDVWEKLMNLCRMHGNLELGDR 600 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~-~Pd~~ty~~LI~a~~~~G~~e~A~~ 600 (773)
..|++++|..+++.+.+. .+.+...+..+..+|.+.|++++|.++++++ .. ..+..+|..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888887665 3345677778888888899999998888876 22 2357788888889999999999999
Q ss_pred HHHHHHHcCCCCc
Q 004114 601 CAEIVEQLDPSRL 613 (773)
Q Consensus 601 ~~e~m~el~p~~~ 613 (773)
.++.+.++.|++.
T Consensus 166 ~~~~~~~~~~~~~ 178 (186)
T 3as5_A 166 HFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCch
Confidence 9998888877664
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-08 Score=109.79 Aligned_cols=261 Identities=10% Similarity=-0.043 Sum_probs=188.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHhhh-------------hccHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-
Q 004114 348 QNGMMASQVLNNCKHEDDFAEASRSSQ-------------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQ----CISVD- 409 (773)
Q Consensus 348 pd~~~~n~LI~~y~k~g~~~~A~~v~~-------------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~----Gv~Pd- 409 (773)
.....+..+-..+.+.|++++|...+. ...+..+...|...|++++|+..|++.... +-.|.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 344455566777888888888888531 011223677888899999999999887543 21222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCC----HHHHHHHHHHHHhCCC--------------------hHHH
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLS-PLR----VSTYNGILKMYSECDS--------------------MDDA 464 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~-~pd----~~tynaLI~ay~k~G~--------------------l~eA 464 (773)
..++..+...+...|++++|...+...++... ..+ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34677778888899999999999988776411 012 4477888888999999 8999
Q ss_pred HHHHHHhhc-----C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcCCChHHH
Q 004114 465 FSVFSNMTE-----R----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL-KPD----DQIFIGVFSACSALGDVVEG 530 (773)
Q Consensus 465 ~~lf~~M~~-----~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv-~Pd----~~Ty~~LL~a~~~~G~~deA 530 (773)
+..|++..+ . ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 888876642 1 235788888999999999999999988865311 122 23677888888999999999
Q ss_pred HHHHHHHHHhcCCCCC----cchhhhHHHHHHhCCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCChhHH
Q 004114 531 MLHFESMSKDYGIVPS----MKHYVSIVDMLGSTGYLDEALEFIEKM----PMEPD----VDVWEKLMNLCRMHGNLELG 598 (773)
Q Consensus 531 ~~if~~M~~~~Gi~Pd----~~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd----~~ty~~LI~a~~~~G~~e~A 598 (773)
..++++..+...-..+ ..++..+...|.+.|++++|.+.+++. +-.++ ..++..+...+...|+++.|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9998876543111111 457778888999999999999998876 11122 55778888889999999999
Q ss_pred HHHHHHHHHc
Q 004114 599 DRCAEIVEQL 608 (773)
Q Consensus 599 ~~~~e~m~el 608 (773)
...++...++
T Consensus 327 ~~~~~~al~~ 336 (406)
T 3sf4_A 327 MHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-08 Score=95.94 Aligned_cols=166 Identities=13% Similarity=0.129 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSA 520 (773)
Q Consensus 444 d~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a 520 (773)
++.+|..|-..|.+.|++++|+..|++..+ | +..+|..+...|.+.|++++|+..+.+...... -+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 456777777777777777777777777653 3 666777777788888888888888877766432 234556666667
Q ss_pred HHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 004114 521 CSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELG 598 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A 598 (773)
+...++++.|...+....+. .+-+...+..+..+|.+.|++++|.+.|++. .+.| +..+|..+-.++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 77778888888877776554 2334567777788888888888888888776 3334 467888888888888999989
Q ss_pred HHHHHHHHHcCCCC
Q 004114 599 DRCAEIVEQLDPSR 612 (773)
Q Consensus 599 ~~~~e~m~el~p~~ 612 (773)
...++...+++|++
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 88888888888764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-08 Score=111.43 Aligned_cols=229 Identities=12% Similarity=0.056 Sum_probs=178.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CC-CCCHHHHHH
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDL----PTFSQLMQACGDAKALEEAKAVHEHVERL----LS-PLRVSTYNG 450 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~----~ty~~LL~a~~~~g~le~A~~l~~~m~k~----G~-~pd~~tyna 450 (773)
.+-..+...|++++|+.+|+++.+.... +. .++..+..++...|++++|...+++.++. +. +....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 4677889999999999999999986322 33 46778888899999999999999988764 11 223567888
Q ss_pred HHHHHHhCCChHHHHHHHHHhhcC---------CHhHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHH
Q 004114 451 ILKMYSECDSMDDAFSVFSNMTER---------DLTSWDTMITGFAKNGL-----------------GEDAVDIFSQFKQ 504 (773)
Q Consensus 451 LI~ay~k~G~l~eA~~lf~~M~~~---------d~~tyn~LI~ay~~~G~-----------------~deAl~Lf~eM~~ 504 (773)
+...|...|++++|+..|++..+- ...+|..+...|...|+ +++|++.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999887631 34578889999999999 9999999988654
Q ss_pred C----CCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC----cchhhhHHHHHHhCCCHHHHHHHHHhC-C
Q 004114 505 A----GLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS----MKHYVSIVDMLGSTGYLDEALEFIEKM-P 574 (773)
Q Consensus 505 ~----Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd----~~tyn~LI~~y~r~G~l~eA~~lf~~M-~ 574 (773)
. +-.|. ..++..+...+...|++++|..++++..+...-.++ ...+..+..+|...|++++|.+.|++. .
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 21122 247778888999999999999999887553111112 237888999999999999999999876 1
Q ss_pred C---CC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 575 M---EP----DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 575 ~---~P----d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
+ .. ...++..+...+...|++++|...++...++.
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 11 15678888999999999999999998887663
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-08 Score=104.18 Aligned_cols=228 Identities=15% Similarity=0.111 Sum_probs=176.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCC-CHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVD----LPTFSQLMQACGDAKALEEAKAVHEHVERL----LSPL-RVSTYNGI 451 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd----~~ty~~LL~a~~~~g~le~A~~l~~~m~k~----G~~p-d~~tynaL 451 (773)
.-..+...|++++|+.+|+++.+.... + ...+..+...+...|++++|...+...++. +..+ ...++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 466788999999999999999886322 3 357778888899999999999999887654 2222 25578888
Q ss_pred HHHHHhCCChHHHHHHHHHhhc-----CC----HhHHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 004114 452 LKMYSECDSMDDAFSVFSNMTE-----RD----LTSWDTMITGFAKNGL--------------------GEDAVDIFSQF 502 (773)
Q Consensus 452 I~ay~k~G~l~eA~~lf~~M~~-----~d----~~tyn~LI~ay~~~G~--------------------~deAl~Lf~eM 502 (773)
...|...|++++|+..|++..+ .+ ..+|..+...|...|+ +++|+..+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999988753 22 3478889999999999 99999999886
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC----cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 503 KQA----GLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS----MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 503 ~~~----Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd----~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
... +-.|. ..++..+...+...|++++|..++++..+...-.++ ..++..+...|...|++++|.+++++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542 21121 346777888889999999999999887543111111 337888889999999999999999876
Q ss_pred ----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 574 ----PMEPD----VDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 574 ----~~~Pd----~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
+-.++ ..++..+...+...|++++|...++...++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 11122 5677888889999999999999998887663
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-06 Score=97.12 Aligned_cols=207 Identities=9% Similarity=-0.019 Sum_probs=89.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----CC
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGD----AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE----CD 459 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~----~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k----~G 459 (773)
.++.++|++.|++..+.| +...+..|-..+.. .++.++|...+....+.| +...+..|..+|.. .+
T Consensus 164 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 445555555555554443 34444444444444 445555555555554433 23344444444443 44
Q ss_pred ChHHHHHHHHHhhcC-CHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC-----CChHH
Q 004114 460 SMDDAFSVFSNMTER-DLTSWDTMITGFAK----NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL-----GDVVE 529 (773)
Q Consensus 460 ~l~eA~~lf~~M~~~-d~~tyn~LI~ay~~----~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~-----G~~de 529 (773)
+.++|+.+|++..+. +...+..|-..|.. .++.++|+.+|++..+.| +...+..|-..+... ++.++
T Consensus 238 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 555555555544322 33344444444444 444555555555444332 222333333333333 44455
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhHHHHHHhCC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHH
Q 004114 530 GMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG---YLDEALEFIEKMPMEPDVDVWEKLMNLCRM----HGNLELGDRCA 602 (773)
Q Consensus 530 A~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G---~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~----~G~~e~A~~~~ 602 (773)
|..+|....+. + +...+..|-.+|.+.| +.++|.++|++.--..+...+..|-..|.. .++.++|...+
T Consensus 315 A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 315 AISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 54444444332 1 2233333444444333 344444444433101233444444444444 34444444444
Q ss_pred HHHHH
Q 004114 603 EIVEQ 607 (773)
Q Consensus 603 e~m~e 607 (773)
+...+
T Consensus 391 ~~A~~ 395 (490)
T 2xm6_A 391 RKAAE 395 (490)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-07 Score=90.10 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHH
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGF 486 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay 486 (773)
..+|..|-.++...|++++|...|++.++.. +-+..++..+..+|.+.|++++|+..+..... .+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 4455555555556666666666666555543 22455555555666666666666666555442 2444555555555
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHH
Q 004114 487 AKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEA 566 (773)
Q Consensus 487 ~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA 566 (773)
...+++++|...+.+..... .-+..++..+-.++...|++++|+..|++..+. -+-+..+|..+..+|.+.|++++|
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHHHH
Confidence 56666666666665555432 113344555555556666666666666555443 122345555566666666666666
Q ss_pred HHHHHhC
Q 004114 567 LEFIEKM 573 (773)
Q Consensus 567 ~~lf~~M 573 (773)
.+.|++.
T Consensus 161 ~~~~~~a 167 (184)
T 3vtx_A 161 VKYFKKA 167 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.5e-08 Score=105.17 Aligned_cols=228 Identities=15% Similarity=0.106 Sum_probs=177.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCC-CHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVD----LPTFSQLMQACGDAKALEEAKAVHEHVERL----LSPL-RVSTYNGI 451 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd----~~ty~~LL~a~~~~g~le~A~~l~~~m~k~----G~~p-d~~tynaL 451 (773)
+-..+.+.|++++|+.+|+++.+... .+ ..++..+..++...|++++|...+.++++. +..+ ...++..+
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 56678899999999999999988632 23 356778888899999999999999987654 2222 25578888
Q ss_pred HHHHHhCCChHHHHHHHHHhhc-----CC----HhHHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 004114 452 LKMYSECDSMDDAFSVFSNMTE-----RD----LTSWDTMITGFAKNGL--------------------GEDAVDIFSQF 502 (773)
Q Consensus 452 I~ay~k~G~l~eA~~lf~~M~~-----~d----~~tyn~LI~ay~~~G~--------------------~deAl~Lf~eM 502 (773)
..+|...|++++|+..|++..+ .+ ..+|..+...|...|+ +++|+..+.+.
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 173 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999988763 22 4578889999999999 99999999886
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC----cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 503 KQA----GLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS----MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 503 ~~~----Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd----~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
... +-.|. ..++..+...+...|++++|..++++..+...-.++ ..++..+..+|...|++++|.+.+++.
T Consensus 174 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 542 21122 346778888899999999999999887653211122 237888899999999999999999876
Q ss_pred ----CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 004114 574 ----PMEPD----VDVWEKLMNLCRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 574 ----~~~Pd----~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~ 609 (773)
+-.++ ..++..+...+...|++++|...++...++.
T Consensus 254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 11112 5678888999999999999999998887764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-07 Score=107.55 Aligned_cols=216 Identities=11% Similarity=0.079 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 392 KEAIEVLGLLEKQCISVDLPTFSQLMQACGD-------AKALE-------EAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 392 ~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~-------~g~le-------~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
++|+.+|++.+.. .+-+...|..+...+.+ .|+++ +|+.+++..++.-.+-+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4778888888875 23366778777777765 68877 899999988863234468899999999999
Q ss_pred CCChHHHHHHHHHhhc--C-CH-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHcCCChHHHHH
Q 004114 458 CDSMDDAFSVFSNMTE--R-DL-TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFS-ACSALGDVVEGML 532 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~--~-d~-~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~-a~~~~G~~deA~~ 532 (773)
.|++++|..+|+++.+ | +. ..|..++..+.+.|++++|.++|++..+..- .+...|..... .+...|+.++|..
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHH
Confidence 9999999999998874 3 33 5899999999999999999999999987521 12233332222 2335899999999
Q ss_pred HHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004114 533 HFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM----PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIVE 606 (773)
Q Consensus 533 if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m~ 606 (773)
+|+...+.. +-+...|..+++.+.+.|+.++|..+|++. +..|+ ..+|...+.....+|+.+.+..+.+.+.
T Consensus 413 ~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 413 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999887752 235788999999999999999999999987 33333 5689999999999999999999999999
Q ss_pred HcCCC
Q 004114 607 QLDPS 611 (773)
Q Consensus 607 el~p~ 611 (773)
+..|+
T Consensus 491 ~~~p~ 495 (530)
T 2ooe_A 491 TAFRE 495 (530)
T ss_dssp HHTHH
T ss_pred HHCch
Confidence 88774
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2.5e-08 Score=101.18 Aligned_cols=165 Identities=11% Similarity=0.107 Sum_probs=97.5
Q ss_pred ccHHHHHHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHH
Q 004114 322 YQWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLL 401 (773)
Q Consensus 322 ~~w~~a~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M 401 (773)
-.+..+...|+++.+....+..........++..+..+|...|++++|... +.+|+++..+.
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~------------------~~~al~~~~~~ 76 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL------------------LNDALAIREKT 76 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHH------------------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHH------------------HHHHHHHHHHH
Confidence 344567777777776666544322222334455555555555555555552 12233333322
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----C--CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC
Q 004114 402 EKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL-----S--PLRVSTYNGILKMYSECDSMDDAFSVFSNMTER 474 (773)
Q Consensus 402 ~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G-----~--~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~ 474 (773)
..........++..+..++...|++++|...+.++++.. . +....++..+...|.+.|++++|+.+|+++.+.
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 77 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp TCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 111112234578888888899999999999998887651 1 223556777777788888888888777765421
Q ss_pred -----------CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 475 -----------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 475 -----------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
...+|..+...|...|++++|+.+|++..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 157 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234556666666666666666666666554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-07 Score=102.86 Aligned_cols=233 Identities=9% Similarity=0.043 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 351 MMASQVLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGK-VKEAIEVLGLLEKQCISVDLPTFSQLMQAC 420 (773)
Q Consensus 351 ~~~n~LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~-~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~ 420 (773)
.++..+-.++.+.|++++|+..+. ...+..+-..|.+.|+ +++|+..|++.++..- -+...|..+-.++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 355677788889999999998532 1222236777889997 9999999999998642 2677899999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHH-cCChHHH-
Q 004114 421 GDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAK-NGLGEDA- 495 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~-~G~~deA- 495 (773)
...|++++|+..++.+++... -+..+|..+..+|.+.|++++|+..|+++.+ | +...|+.+..+|.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 999999999999999999753 3788999999999999999999999999884 3 77899999999999 6766888
Q ss_pred ----HHHHHHHHHCCCCCC-HHHHHHHHHHHHcCC--ChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCC-------
Q 004114 496 ----VDIFSQFKQAGLKPD-DQIFIGVFSACSALG--DVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG------- 561 (773)
Q Consensus 496 ----l~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G--~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G------- 561 (773)
+..|++.+.. .|+ ...|..+...+...| ++++|+..+.++ + .-+.+...+..|.++|.+.|
T Consensus 256 ~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 256 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccch
Confidence 5888888774 454 567888888888888 689999888777 2 22334577888999998874
Q ss_pred --CHHHHHHHHHhC--CCCCC-HHHHHHHHHHHH
Q 004114 562 --YLDEALEFIEKM--PMEPD-VDVWEKLMNLCR 590 (773)
Q Consensus 562 --~l~eA~~lf~~M--~~~Pd-~~ty~~LI~a~~ 590 (773)
.+++|.++++++ .+.|. ...|..+...+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 369999999988 56665 456666665554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.8e-06 Score=94.63 Aligned_cols=248 Identities=11% Similarity=-0.011 Sum_probs=144.7
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHhhh-------hccHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004114 349 NGMMASQVLNNCKH----EDDFAEASRSSQ-------NNGTLEQLDGLVK----EGKVKEAIEVLGLLEKQCISVDLPTF 413 (773)
Q Consensus 349 d~~~~n~LI~~y~k----~g~~~~A~~v~~-------~~~~~~LI~a~~~----~G~~~eAl~lf~~M~~~Gv~Pd~~ty 413 (773)
++.....|-.+|.. .+++++|...+. ......|-..|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34444455555555 566666665431 1111224445555 667777777777766654 44555
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHhhcC-CHhHHHHHHH
Q 004114 414 SQLMQACGD----AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE----CDSMDDAFSVFSNMTER-DLTSWDTMIT 484 (773)
Q Consensus 414 ~~LL~a~~~----~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k----~G~l~eA~~lf~~M~~~-d~~tyn~LI~ 484 (773)
..|-..+.. .+++++|...|+...+.| +...+..|-.+|.. .++.++|+..|++..+. +..++..|..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555 566777777777766654 44555666666665 56677777777665543 5566666666
Q ss_pred HHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHH
Q 004114 485 GFAK----NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA----LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDM 556 (773)
Q Consensus 485 ay~~----~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~----~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~ 556 (773)
.|.. .++.++|+..|++..+.| +..++..|-..+.. .++.++|..+|+...+. + +...+..|-.+
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 264 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-G---NSIAQFRLGYI 264 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-T---CHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHH
Confidence 6666 667777777777666654 34455555555554 56677777766665443 2 33445555555
Q ss_pred HHh----CCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHcC
Q 004114 557 LGS----TGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMH-----GNLELGDRCAEIVEQLD 609 (773)
Q Consensus 557 y~r----~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~-----G~~e~A~~~~e~m~el~ 609 (773)
|.. .++.++|.++|++.--.-+...+..|-..+... ++.++|...++...+..
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 555 666777777776652122445555555555555 66666666666665543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-08 Score=111.24 Aligned_cols=206 Identities=13% Similarity=0.072 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 004114 390 KVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKAL-EEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVF 468 (773)
Q Consensus 390 ~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~l-e~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf 468 (773)
.+++|+..+.+.... ...+...+..+-.++...|++ ++|...+++.++.. +-+..+|..|..+|.+.|++++|+..|
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356777777776554 234677888888888999999 99999999998874 335788999999999999999999999
Q ss_pred HHhh--cCCHhHHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC--------CChHH
Q 004114 469 SNMT--ERDLTSWDTMITGFAKN---------GLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL--------GDVVE 529 (773)
Q Consensus 469 ~~M~--~~d~~tyn~LI~ay~~~---------G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~--------G~~de 529 (773)
++.. .|+..+|..+...|... |++++|+..|++..+... -+...|..+..+|... |++++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9886 46778888888889888 999999999999887532 2466788888888888 88999
Q ss_pred HHHHHHHHHHhcCCCC----CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHH
Q 004114 530 GMLHFESMSKDYGIVP----SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRC 601 (773)
Q Consensus 530 A~~if~~M~~~~Gi~P----d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~ 601 (773)
|+..|++..+. .| +...|..+..+|.+.|++++|.+.|++. .+.| +...|..+..++...|++++|...
T Consensus 240 A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 240 ALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888664 34 6778888999999999999999999877 3344 466788888888888877776653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-07 Score=103.36 Aligned_cols=229 Identities=13% Similarity=0.046 Sum_probs=178.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC----CCHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQC-ISVD----LPTFSQLMQACGDAKALEEAKAVHEHVERL--LSP----LRVSTYN 449 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~G-v~Pd----~~ty~~LL~a~~~~g~le~A~~l~~~m~k~--G~~----pd~~tyn 449 (773)
.-..+...|++++|+..|.+..+.- -.+| ..++..+-.++...|++++|...+.+.++. ... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3445678999999999999997641 1123 357888888899999999999999988775 111 1245788
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhc-----CC----HhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHH
Q 004114 450 GILKMYSECDSMDDAFSVFSNMTE-----RD----LTSWDTMITGFAKNGLGEDAVDIFSQFKQA----GLKP-DDQIFI 515 (773)
Q Consensus 450 aLI~ay~k~G~l~eA~~lf~~M~~-----~d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~----Gv~P-d~~Ty~ 515 (773)
.|-.+|...|++++|+..|++..+ .+ ..+|..|...|...|++++|+..|++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999988763 12 247888999999999999999999998762 3323 356788
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhc---CCCCCcchhhhHHHHHHhCCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 004114 516 GVFSACSALGDVVEGMLHFESMSKDY---GIVPSMKHYVSIVDMLGSTGY---LDEALEFIEKMPMEPD-VDVWEKLMNL 588 (773)
Q Consensus 516 ~LL~a~~~~G~~deA~~if~~M~~~~---Gi~Pd~~tyn~LI~~y~r~G~---l~eA~~lf~~M~~~Pd-~~ty~~LI~a 588 (773)
.+..++...|++++|..++++..+-. +-+.....+..|-..|...|+ +++|..++++.+..|+ ..++..|...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 89999999999999999998865431 111122335677888889999 9999999999965554 3467778889
Q ss_pred HHHcCChhHHHHHHHHHHHcC
Q 004114 589 CRMHGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 589 ~~~~G~~e~A~~~~e~m~el~ 609 (773)
|...|++++|...++...++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-07 Score=88.96 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=107.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
.+...+...|++++|+++|+++.+.. +.+..++..+..++...|++++|..+++.+++.. +.+..++..+...|.+.|
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhc
Confidence 35666777788888888777765542 2356667777777777777888887777777663 335666777777777777
Q ss_pred ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004114 460 SMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFES 536 (773)
Q Consensus 460 ~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~ 536 (773)
++++|..+|+++.+ .+...|..+...|...|++++|+.+|+++.+.. ..+..++..+...+...|++++|..+++.
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777776653 356667777777777777777777777776643 22455666677777777777777777766
Q ss_pred HHH
Q 004114 537 MSK 539 (773)
Q Consensus 537 M~~ 539 (773)
+.+
T Consensus 170 ~~~ 172 (186)
T 3as5_A 170 ANE 172 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.85 E-value=7.5e-08 Score=97.57 Aligned_cols=218 Identities=12% Similarity=0.090 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCC-CHHHHHHHHHHHHhCCChHH
Q 004114 391 VKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL------LSPL-RVSTYNGILKMYSECDSMDD 463 (773)
Q Consensus 391 ~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~------G~~p-d~~tynaLI~ay~k~G~l~e 463 (773)
+++|++++.++..........++..+..++...|++++|...+.++++. +-.| ...++..+..+|...|++++
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 103 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHH
Confidence 3456666665553332334567888999999999999999999998875 2222 35688899999999999999
Q ss_pred HHHHHHHhhc-------C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHcCC
Q 004114 464 AFSVFSNMTE-------R----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA------GLKPD-DQIFIGVFSACSALG 525 (773)
Q Consensus 464 A~~lf~~M~~-------~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~------Gv~Pd-~~Ty~~LL~a~~~~G 525 (773)
|+.+|++..+ + ...+|..+...|...|++++|+.+|++..+. .-.|+ ..++..+..++...|
T Consensus 104 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 9999988763 1 3567888999999999999999999999775 22333 457888889999999
Q ss_pred ChHHHHHHHHHHHHhc------CCCCCc-chhhhHHHHHHh------CCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHH
Q 004114 526 DVVEGMLHFESMSKDY------GIVPSM-KHYVSIVDMLGS------TGYLDEALEFIEKMP-MEPD-VDVWEKLMNLCR 590 (773)
Q Consensus 526 ~~deA~~if~~M~~~~------Gi~Pd~-~tyn~LI~~y~r------~G~l~eA~~lf~~M~-~~Pd-~~ty~~LI~a~~ 590 (773)
++++|..+++++.+.. ...+.. ..+..+...+.. ...+.++..+++.+. ..|+ ..++..|..+|.
T Consensus 184 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 263 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR 263 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999998876531 122332 233333333332 223455555555553 2232 567888999999
Q ss_pred HcCChhHHHHHHHHHHHc
Q 004114 591 MHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 591 ~~G~~e~A~~~~e~m~el 608 (773)
..|++++|...++...++
T Consensus 264 ~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 264 RQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.83 E-value=5.7e-07 Score=95.10 Aligned_cols=183 Identities=11% Similarity=0.078 Sum_probs=147.3
Q ss_pred HcCCH-------HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-HH-HHHHHHHHHH
Q 004114 387 KEGKV-------KEAIEVLGLLEKQCISV-DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR-VS-TYNGILKMYS 456 (773)
Q Consensus 387 ~~G~~-------~eAl~lf~~M~~~Gv~P-d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd-~~-tynaLI~ay~ 456 (773)
+.|++ ++|..+|++..+. +.| +...|..+...+.+.|++++|..+|+.+++. .|+ .. +|..+...+.
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~ 145 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFAR 145 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHH
Confidence 46886 8999999999873 244 5568999999999999999999999999984 443 33 8999999999
Q ss_pred hCCChHHHHHHHHHhhcC---CHhHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 004114 457 ECDSMDDAFSVFSNMTER---DLTSWDTMITGFA-KNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGML 532 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~-~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~ 532 (773)
+.|++++|+.+|++..+. +...|........ ..|+.++|..+|++..+.. .-+...+..++..+.+.|++++|+.
T Consensus 146 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~ 224 (308)
T 2ond_A 146 RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRV 224 (308)
T ss_dssp HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999998753 3344543333322 2699999999999998752 2256778888999999999999999
Q ss_pred HHHHHHHhcCCCCC--cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 533 HFESMSKDYGIVPS--MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 533 if~~M~~~~Gi~Pd--~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+|++..+...+.|+ ...|..++..+.+.|++++|..+++++
T Consensus 225 ~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 225 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998775334553 568888999999999999999999887
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-08 Score=105.75 Aligned_cols=191 Identities=10% Similarity=0.033 Sum_probs=122.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCC-CHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQ------CI-SVDLPTFSQLMQACGDAKALEEAKAVHEHVERL------LSPL-RVS 446 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~------Gv-~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~------G~~p-d~~ 446 (773)
+...|...|++++|+.+|++..+. +- .....++..+...+...|++++|..++.++++. +..| ...
T Consensus 75 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 75 LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 444555555555555555555432 11 223557888888899999999999999988875 2222 355
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcC-----------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCC
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTER-----------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA-------GLK 508 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~~-----------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~-------Gv~ 508 (773)
++..+...|.+.|++++|+.+|+++.+. ...+|..+...|...|++++|+.+|+++.+. ...
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 7888899999999999999999887531 2457888999999999999999999998763 122
Q ss_pred CCHH-------HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 509 PDDQ-------IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 509 Pd~~-------Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+... .+..+...+...+.+.++...+...... -+....++..|..+|.+.|++++|.++|++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2221 1222223333444555555555554332 1224567888999999999999999999764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.82 E-value=7.6e-08 Score=108.94 Aligned_cols=190 Identities=12% Similarity=0.057 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCh-HHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHH
Q 004114 426 LEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSM-DDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQ 501 (773)
Q Consensus 426 le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l-~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~e 501 (773)
++++...+....+. .+.+...+..+-.+|...|++ ++|++.|++..+ | +...|..+..+|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56677777765543 234788899999999999999 999999998863 3 678999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcC---------CChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhC--------CCHH
Q 004114 502 FKQAGLKPDDQIFIGVFSACSAL---------GDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST--------GYLD 564 (773)
Q Consensus 502 M~~~Gv~Pd~~Ty~~LL~a~~~~---------G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~--------G~l~ 564 (773)
..+. .|+..++..+-.++... |++++|+.+|++..+. -+-+...|..|..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9875 58888889999999999 9999999999998764 233577888999999988 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcC
Q 004114 565 EALEFIEKM-PMEP----DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAG 620 (773)
Q Consensus 565 eA~~lf~~M-~~~P----d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG 620 (773)
+|.+.|++. .+.| +...|..+..+|...|++++|...++...+++|++..++...+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 299 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999987 4455 6889999999999999999999999999999999875444333
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.2e-06 Score=94.79 Aligned_cols=284 Identities=8% Similarity=-0.058 Sum_probs=192.4
Q ss_pred cHHHHHHHHhhchHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHhhhhc-----------------cHHHHHHH
Q 004114 323 QWDQSRRQYQQNPNEGQYQSYSGNIQ-NGMMASQVLNNCKHEDDFAEASRSSQNN-----------------GTLEQLDG 384 (773)
Q Consensus 323 ~w~~a~~~f~~~~~~~~~m~~~gl~p-d~~~~n~LI~~y~k~g~~~~A~~v~~~~-----------------~~~~LI~a 384 (773)
+...++..|+++.++..........| ...+|+.+-.+|...|++++|...+.-. ....+-.+
T Consensus 66 ~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~ 145 (472)
T 4g1t_A 66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWT 145 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHH
Confidence 34677777877776655443333333 4568999999999999999998742100 01112233
Q ss_pred HHH--cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-
Q 004114 385 LVK--EGKVKEAIEVLGLLEKQCISVD-LPTFSQLMQA---CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE- 457 (773)
Q Consensus 385 ~~~--~G~~~eAl~lf~~M~~~Gv~Pd-~~ty~~LL~a---~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k- 457 (773)
+.+ .+++++|++.|++..+. .|+ ...+..+..+ +...++.++|.+.++..++.. +.+..++..+...+.+
T Consensus 146 ~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~ 222 (472)
T 4g1t_A 146 RLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKM 222 (472)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHC
T ss_pred HHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHH
Confidence 444 35799999999999876 344 4444444433 445677788999998888864 3356666666555555
Q ss_pred ---CCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc-------
Q 004114 458 ---CDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSA------- 523 (773)
Q Consensus 458 ---~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~------- 523 (773)
.++.++|.++|++..+ .+..+|..+...|...|++++|+..|++..+. .|+ ..++..+-.++..
T Consensus 223 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~ 300 (472)
T 4g1t_A 223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMN 300 (472)
T ss_dssp C------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhh
Confidence 4678899999987763 36778999999999999999999999999875 354 4455554444322
Q ss_pred ------------CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHH----HHHHH
Q 004114 524 ------------LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDV----WEKLM 586 (773)
Q Consensus 524 ------------~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~t----y~~LI 586 (773)
....++|..++....+. -+.+..++..+..+|.+.|++++|.+.|++. .+.|+... +..+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~ 378 (472)
T 4g1t_A 301 LRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYG 378 (472)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 12356677777766553 2345678889999999999999999999876 34444332 22222
Q ss_pred H-HHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 587 N-LCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 587 ~-a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
. .....|+.++|...++...++.|+..
T Consensus 379 ~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 379 NFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 2 23467899999999999999998763
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-06 Score=106.58 Aligned_cols=231 Identities=15% Similarity=0.150 Sum_probs=164.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHhh----hhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004114 348 QNGMMASQVLNNCKHEDDFAEASRSS----QNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDA 423 (773)
Q Consensus 348 pd~~~~n~LI~~y~k~g~~~~A~~v~----~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~ 423 (773)
-+..+|..+-.++.+.|++++|...+ .+..+.+++.+|.+.|++++|++.|...++.. ++....+.+.-+|++.
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT 1180 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhh
Confidence 34677888888888888888888754 23344568888888888888888887665543 3333344577788888
Q ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 424 KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 424 g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
+++++...+. + .++...|..+-+.|...|++++|..+|... ..|..+..+|++.|++++|++.+++-
T Consensus 1181 ~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1181 NRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred cCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 8777544332 2 345566667888888888888888888875 47888888888888888888888765
Q ss_pred HCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHH
Q 004114 504 QAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDV 581 (773)
Q Consensus 504 ~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~t 581 (773)
-+..+|.-+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++.- ++.| ....
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence 3557888888888888888887765432 3345667778899999999999999999765 5444 3557
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHH
Q 004114 582 WEKLMNLCRMHGNLELGDRCAEIV 605 (773)
Q Consensus 582 y~~LI~a~~~~G~~e~A~~~~e~m 605 (773)
|+-|..++++.. .++..+.++.+
T Consensus 1317 ftELaiLyaKy~-peklmEhlk~f 1339 (1630)
T 1xi4_A 1317 FTELAILYSKFK-PQKMREHLELF 1339 (1630)
T ss_pred HHHHHHHHHhCC-HHHHHHHHHHH
Confidence 777777777654 33334444433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.81 E-value=6.6e-07 Score=110.83 Aligned_cols=224 Identities=13% Similarity=0.063 Sum_probs=144.7
Q ss_pred hcCChhHHHHhh----hhccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004114 362 HEDDFAEASRSS----QNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVE 437 (773)
Q Consensus 362 k~g~~~~A~~v~----~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~ 437 (773)
..+++++|.++. ....+..+-.++.+.|++++|++.|.+. -|...|.-++.+|.+.|++++|.+.+...+
T Consensus 1088 ~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred HHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555554432 2222233666777777777777777542 256666677777777777777777777665
Q ss_pred HhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004114 438 RLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGV 517 (773)
Q Consensus 438 k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~L 517 (773)
+.. ++..+.+.++.+|+|.+++++...+. ..++...|..+-..|...|++++|..+|... ..|..+
T Consensus 1162 k~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rL 1227 (1630)
T 1xi4_A 1162 KKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 1227 (1630)
T ss_pred hhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHH
Confidence 543 33333344777777777776533332 3445566666777777777777777777663 367777
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 004114 518 FSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLEL 597 (773)
Q Consensus 518 L~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~ 597 (773)
..++.+.|++++|.+.+.+. -+..+|..+..+|...|++..|......+ .-+...+..++..|.+.|.+++
T Consensus 1228 A~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feE 1298 (1630)
T 1xi4_A 1228 ASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEE 1298 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777766543 24466777777777777777777766543 3345566688888888899999
Q ss_pred HHHHHHHHHHcCCCCch
Q 004114 598 GDRCAEIVEQLDPSRLN 614 (773)
Q Consensus 598 A~~~~e~m~el~p~~~~ 614 (773)
|..+++....+++.+..
T Consensus 1299 AI~LlE~aL~LeraH~g 1315 (1630)
T 1xi4_A 1299 LITMLEAALGLERAHMG 1315 (1630)
T ss_pred HHHHHHHHhccChhHhH
Confidence 98888888887766643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.9e-07 Score=91.09 Aligned_cols=196 Identities=9% Similarity=0.070 Sum_probs=149.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHH
Q 004114 408 VDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMIT 484 (773)
Q Consensus 408 Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ 484 (773)
.|+..+..+-..+...|++++|...|...++...+++..++..+..+|.+.|++++|+..|++..+ | +..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 466788888888999999999999999999986546777777799999999999999999998874 3 5678999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC---cchhhhH
Q 004114 485 GFAKNGLGEDAVDIFSQFKQAGLKPD-D-------QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS---MKHYVSI 553 (773)
Q Consensus 485 ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~-------~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd---~~tyn~L 553 (773)
.|...|++++|+..|++..+. .|+ . .+|..+-..+...|++++|+..|.+..+ +.|+ ...+..|
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999874 344 3 3467777788889999999999988754 4565 4566666
Q ss_pred HHHHHhCCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchH
Q 004114 554 VDMLGSTGYLDEALEFIEKM-PM-EPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 554 I~~y~r~G~l~eA~~lf~~M-~~-~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
..+|...|+ .+++++ .+ ..+...|..+.. ...+.+++|...++...+++|++..+
T Consensus 160 ~~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 160 GVLFYNNGA-----DVLRKATPLASSNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp HHHHHHHHH-----HHHHHHGGGTTTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHH-----HHHHHHHhcccCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 677765443 333333 11 223445544443 34566899999999999999998644
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-06 Score=95.53 Aligned_cols=225 Identities=12% Similarity=0.070 Sum_probs=174.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CC---CC-CHHHHHHH
Q 004114 383 DGLVKEGKVKEAIEVLGLLEKQC-ISVD----LPTFSQLMQACGDAKALEEAKAVHEHVERL--LS---PL-RVSTYNGI 451 (773)
Q Consensus 383 ~a~~~~G~~~eAl~lf~~M~~~G-v~Pd----~~ty~~LL~a~~~~g~le~A~~l~~~m~k~--G~---~p-d~~tynaL 451 (773)
..+...|++++|+..|.+..+.- -.+| ..++..+..++...|+++.|...+.+.++. .. .+ ...+++.|
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 34568999999999999987642 1133 346778888899999999999999988764 11 11 24578889
Q ss_pred HHHHHhCCChHHHHHHHHHhhc-----CC----HhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 004114 452 LKMYSECDSMDDAFSVFSNMTE-----RD----LTSWDTMITGFAKNGLGEDAVDIFSQFKQ-----AGLKPDDQIFIGV 517 (773)
Q Consensus 452 I~ay~k~G~l~eA~~lf~~M~~-----~d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~-----~Gv~Pd~~Ty~~L 517 (773)
-.+|...|++++|+..|++..+ .+ ..++..|...|...|++++|+..|++... ... ....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHHHH
Confidence 9999999999999999987763 12 35788899999999999999999999876 322 225678888
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhcCCCCC---cchhhhHHHHHHhCCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 004114 518 FSACSALGDVVEGMLHFESMSKDYGIVPS---MKHYVSIVDMLGSTGY---LDEALEFIEKMPMEPD-VDVWEKLMNLCR 590 (773)
Q Consensus 518 L~a~~~~G~~deA~~if~~M~~~~Gi~Pd---~~tyn~LI~~y~r~G~---l~eA~~lf~~M~~~Pd-~~ty~~LI~a~~ 590 (773)
..++.+.|+.++|..++++..+...-..+ ...+..|-..|...++ +.+|..++++.+..|+ ...+..|...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 99999999999999999988765322222 3345566667778888 9999999999764444 346667888999
Q ss_pred HcCChhHHHHHHHHHHHc
Q 004114 591 MHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 591 ~~G~~e~A~~~~e~m~el 608 (773)
..|+++.|...++...++
T Consensus 348 ~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999998887654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-06 Score=97.60 Aligned_cols=107 Identities=6% Similarity=0.039 Sum_probs=58.3
Q ss_pred HhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhh----ccHHHHHHHHH-----HcCCHHHHHH----H
Q 004114 331 YQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQN----NGTLEQLDGLV-----KEGKVKEAIE----V 397 (773)
Q Consensus 331 f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~----~~~~~LI~a~~-----~~G~~~eAl~----l 397 (773)
++.+..+...+++. ++-+...|..++..+.+.|++++|+.++.- .....+-..|+ ..|+.++|.+ +
T Consensus 28 ~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~ 106 (530)
T 2ooe_A 28 IDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA 106 (530)
T ss_dssp HHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 34444444444432 344566777777777777777777775321 11112222222 3466665554 5
Q ss_pred HHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHH
Q 004114 398 LGLLEKQ-CISV-DLPTFSQLMQACGD---------AKALEEAKAVHEHVER 438 (773)
Q Consensus 398 f~~M~~~-Gv~P-d~~ty~~LL~a~~~---------~g~le~A~~l~~~m~k 438 (773)
|++.+.. |..| +...|...+....+ .|+++.|+.+|+..++
T Consensus 107 ~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 107 YDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 5555432 4443 34555555554433 5677888888877776
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.2e-07 Score=99.91 Aligned_cols=286 Identities=11% Similarity=-0.039 Sum_probs=161.0
Q ss_pred cHHHHHHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CChhHHHHhhhhc---------cHHH---HHHHHHHc
Q 004114 323 QWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHE--DDFAEASRSSQNN---------GTLE---QLDGLVKE 388 (773)
Q Consensus 323 ~w~~a~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~--g~~~~A~~v~~~~---------~~~~---LI~a~~~~ 388 (773)
++..+...|+.+..+..............++..+-.++.+. ++.++|...+.-. .... +...+...
T Consensus 109 ~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence 34555555655544443222111122345555555555554 4678888753210 0011 22234566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHH
Q 004114 389 GKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDA----KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDA 464 (773)
Q Consensus 389 G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~----g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA 464 (773)
++.++|++.|++..+.. +.+..++..+...+... ++.++|.+++++..+.. +.+..++..+...|.+.|++++|
T Consensus 189 ~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A 266 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKA 266 (472)
T ss_dssp CCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHH
Confidence 88888999998887753 22455666655555543 56788999998888764 34677888899999999999999
Q ss_pred HHHHHHhhc--C-CHhHHHHHHHHHHHc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004114 465 FSVFSNMTE--R-DLTSWDTMITGFAKN-------------------GLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACS 522 (773)
Q Consensus 465 ~~lf~~M~~--~-d~~tyn~LI~ay~~~-------------------G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~ 522 (773)
+..|++..+ | +..+|..+..+|... +..++|+..|++..+... .+..++..+-..+.
T Consensus 267 ~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 267 IELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHH
Confidence 999988763 3 555666665555322 235677777777766431 22345677778888
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCCcc----hhhhHHH-HHHhCCCHHHHHHHHHhC-CCCCC------------------
Q 004114 523 ALGDVVEGMLHFESMSKDYGIVPSMK----HYVSIVD-MLGSTGYLDEALEFIEKM-PMEPD------------------ 578 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~~Gi~Pd~~----tyn~LI~-~y~r~G~l~eA~~lf~~M-~~~Pd------------------ 578 (773)
..|++++|+.+|++..+. .|+.. .+..+.. .+...|+.++|.+.|++. .+.|+
T Consensus 346 ~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~ 422 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMR 422 (472)
T ss_dssp HTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH
Confidence 999999999998887553 23321 1222222 234678888888887654 33333
Q ss_pred -------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch
Q 004114 579 -------VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN 614 (773)
Q Consensus 579 -------~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~ 614 (773)
..+|..|-.++...|++++|...++...++.|..++
T Consensus 423 l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HHHCC-CTTHHHHHHHHHHHHHHCC------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 344555555555555555555555555555554443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-06 Score=92.88 Aligned_cols=249 Identities=13% Similarity=0.012 Sum_probs=156.3
Q ss_pred HHHHHhcCChhHHHHhhh-------hc-------cHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHH
Q 004114 357 LNNCKHEDDFAEASRSSQ-------NN-------GTLEQLDGLVKEGKVKEAIEVLGLLEKQCI-SVDL----PTFSQLM 417 (773)
Q Consensus 357 I~~y~k~g~~~~A~~v~~-------~~-------~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv-~Pd~----~ty~~LL 417 (773)
-..+...|++++|...+. .. ....+...+...|++++|++.+.+..+..- ..+. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556677777766421 01 111244566778888888888887764210 1122 2345566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh----CCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C------CHhHHHHH
Q 004114 418 QACGDAKALEEAKAVHEHVERL----LSP--L-RVSTYNGILKMYSECDSMDDAFSVFSNMTE--R------DLTSWDTM 482 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~----G~~--p-d~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~------d~~tyn~L 482 (773)
..+...|++++|...+++.++. +.. | ...++..+...|...|++++|+..+++..+ + ...+|..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 6677888888888888877654 222 2 234566677788888888888888887652 1 13467777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-----cchhh
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQAGLKPD--DQIFI----GVFSACSALGDVVEGMLHFESMSKDYGIVPS-----MKHYV 551 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~Gv~Pd--~~Ty~----~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-----~~tyn 551 (773)
...+...|++++|...+++.....-.++ ..... .++..+...|++++|..++...... .|. ...+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP---EFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC---CCTTCGGGHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC---CCCcchhhHHHHH
Confidence 7888888888888888888765321111 11111 2333466888888888888766432 221 11345
Q ss_pred hHHHHHHhCCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 552 SIVDMLGSTGYLDEALEFIEKM-------PMEPDV-DVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M-------~~~Pd~-~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
.+..++...|++++|.+++++. +..++. .++..+..++...|+.++|...++...++
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6677788888888888888765 211122 25556666778888888888877776654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=3.1e-07 Score=96.61 Aligned_cols=96 Identities=8% Similarity=-0.103 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCc----
Q 004114 478 SWDTMITGFAKN-GLGEDAVDIFSQFKQAGLK-PD----DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSM---- 547 (773)
Q Consensus 478 tyn~LI~ay~~~-G~~deAl~Lf~eM~~~Gv~-Pd----~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~---- 547 (773)
+|+.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|+.+|++..+...-.+..
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 445555555553 5555555555554432100 01 2345555555666666666666666554421000111
Q ss_pred -chhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 548 -KHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 548 -~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
..|..+..+|...|++++|...|++.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 02344455556666666666666654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.69 E-value=8.3e-06 Score=87.61 Aligned_cols=227 Identities=11% Similarity=0.009 Sum_probs=164.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCC----HHHHHHHH
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLP----TFSQLMQACGDAKALEEAKAVHEHVERLLS-PLR----VSTYNGIL 452 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~----ty~~LL~a~~~~g~le~A~~l~~~m~k~G~-~pd----~~tynaLI 452 (773)
...+...|++++|+.++.+.....-..+.. ++..+...+...|++++|...+.+.++..- ..+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345668999999999999988764222332 455566677889999999999998876411 112 23456778
Q ss_pred HHHHhCCChHHHHHHHHHhhc----------C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHH
Q 004114 453 KMYSECDSMDDAFSVFSNMTE----------R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLK--P--DDQIFIGV 517 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~~M~~----------~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~--P--d~~Ty~~L 517 (773)
..|...|++++|+..+++..+ + ...++..+...|...|++++|..++++.....-. + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 889999999999999987753 1 1245667788899999999999999998764321 1 23567778
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhh-----hHHHHHHhCCCHHHHHHHHHhC-CCCCC-----HHHHHHHH
Q 004114 518 FSACSALGDVVEGMLHFESMSKDYGIVPSMKHYV-----SIVDMLGSTGYLDEALEFIEKM-PMEPD-----VDVWEKLM 586 (773)
Q Consensus 518 L~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn-----~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-----~~ty~~LI 586 (773)
...+...|++++|..++++......-......+. .++..+...|++++|.+++++. ...|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 8888999999999999998765321111111222 2334577999999999999988 22221 33567788
Q ss_pred HHHHHcCChhHHHHHHHHHHHc
Q 004114 587 NLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 587 ~a~~~~G~~e~A~~~~e~m~el 608 (773)
.++...|++++|...++...+.
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999988877654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5.5e-07 Score=79.99 Aligned_cols=130 Identities=17% Similarity=0.259 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHH
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLG 558 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~ 558 (773)
|..+...|...|++++|+.+|+++.+... .+..++..+...+...|++++|..+++++.+. .+.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 44444455555555555555555544321 13344444445555555555555555554433 1223344455555555
Q ss_pred hCCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 559 STGYLDEALEFIEKM-PM-EPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 559 r~G~l~eA~~lf~~M-~~-~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
..|++++|.++++++ .. ..+..+|..+...+...|+++.|...++.+.++.|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 555555555555554 11 123455556666666666666666666666555543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-06 Score=90.34 Aligned_cols=205 Identities=12% Similarity=0.065 Sum_probs=149.0
Q ss_pred ChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 004114 365 DFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQ----CISVD-LPTFSQLMQACGDAKALEEAKAVHEHVERL 439 (773)
Q Consensus 365 ~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~----Gv~Pd-~~ty~~LL~a~~~~g~le~A~~l~~~m~k~ 439 (773)
++++|...+ ......|...|++++|++.|.+..+. |-.++ ..+|..+..++...|++++|...++..++.
T Consensus 32 ~~~~A~~~~-----~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 106 (292)
T 1qqe_A 32 KFEEAADLC-----VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI 106 (292)
T ss_dssp HHHHHHHHH-----HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 366776642 22456778889999999888877653 32222 458889999999999999999999988765
Q ss_pred CCC-CC----HHHHHHHHHHHHhC-CChHHHHHHHHHhhc--C---C----HhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 440 LSP-LR----VSTYNGILKMYSEC-DSMDDAFSVFSNMTE--R---D----LTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 440 G~~-pd----~~tynaLI~ay~k~-G~l~eA~~lf~~M~~--~---d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
-.. .+ ..++..|-.+|.+. |++++|+..|++..+ | + ..+|..+...|.+.|++++|+..|++..+
T Consensus 107 ~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 211 11 45788899999996 999999999998763 1 1 35788899999999999999999999988
Q ss_pred CCCCCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcc------hhhhHHHHHH--hCCCHHHHHHHH
Q 004114 505 AGLKPDD------QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMK------HYVSIVDMLG--STGYLDEALEFI 570 (773)
Q Consensus 505 ~Gv~Pd~------~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~------tyn~LI~~y~--r~G~l~eA~~lf 570 (773)
....... .+|..+..++...|++++|...|++.. .+.|+.. .+..|+.+|. ..+++++|.+.|
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ---SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG---CC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6433222 156777788889999999999998764 3445422 2344556664 467899999999
Q ss_pred HhC-CCCC
Q 004114 571 EKM-PMEP 577 (773)
Q Consensus 571 ~~M-~~~P 577 (773)
+.+ .+.|
T Consensus 264 ~~~~~l~~ 271 (292)
T 1qqe_A 264 DNFMRLDK 271 (292)
T ss_dssp TTSSCCCH
T ss_pred ccCCccHH
Confidence 877 4444
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=5.4e-07 Score=107.54 Aligned_cols=161 Identities=11% Similarity=0.180 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSA 520 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a 520 (773)
..+++.|-.+|.+.|++++|++.|++..+ | +..+|..|-.+|.+.|++++|++.|++.++. .|+ ..+|..|-.+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 44566666666666666666666665542 2 4556666666666666666666666666553 343 4466666666
Q ss_pred HHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhH
Q 004114 521 CSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLEL 597 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~ 597 (773)
+...|++++|++.|++..+- .| +...|..|..+|.+.|++++|.+.|++. .+.|+ ...|..|..++...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 66677777777666665442 33 3456667777777777777777777665 33443 5677777777778888887
Q ss_pred HHHHHHHHHHcCC
Q 004114 598 GDRCAEIVEQLDP 610 (773)
Q Consensus 598 A~~~~e~m~el~p 610 (773)
|++.++.+.++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 7777777666543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-06 Score=77.55 Aligned_cols=125 Identities=15% Similarity=0.225 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHH
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAK 488 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~ 488 (773)
.|..+...+...|++++|..++..+++.. +.+..++..+...|...|++++|+.+|+++.+ .+...|..+...|..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34455555666666666666666665543 22455555566666666666666666665542 244455555556666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004114 489 NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMS 538 (773)
Q Consensus 489 ~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~ 538 (773)
.|++++|+.+|+++.... ..+..++..+..++...|++++|..++.++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 666666666666555432 1234445555555555566666655555553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.6e-06 Score=101.64 Aligned_cols=154 Identities=12% Similarity=0.158 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHH
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAK 488 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~ 488 (773)
+|+.|-.++.+.|++++|.+.|++.++.. +-+..++..|-.+|.+.|++++|+..|++..+ | +..+|..|-.+|..
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 89 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44444444444444444444444444432 11234444444444444444444444444432 2 33444444444444
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHH
Q 004114 489 NGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEA 566 (773)
Q Consensus 489 ~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA 566 (773)
.|++++|++.|++..+. .|+ ..+|..|-.++...|++++|+..|++..+. .|+ ...|..|..+|...|++++|
T Consensus 90 ~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 90 MQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhcccHHHH
Confidence 55555555554444442 222 334444444444455555555444444332 222 34444444445555554444
Q ss_pred HHHHH
Q 004114 567 LEFIE 571 (773)
Q Consensus 567 ~~lf~ 571 (773)
.+.++
T Consensus 165 ~~~~~ 169 (723)
T 4gyw_A 165 DERMK 169 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.9e-06 Score=82.94 Aligned_cols=190 Identities=11% Similarity=0.071 Sum_probs=142.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 378 TLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 378 ~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
+..+-..+.+.|++++|+..|.+..+..-.++...+..+..++...|++++|...+...++... -+..++..+..+|.+
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHH
Confidence 3346678889999999999999999875447888888888899999999999999999998642 256788999999999
Q ss_pred CCChHHHHHHHHHhhc--C-CH-------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcC
Q 004114 458 CDSMDDAFSVFSNMTE--R-DL-------TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD---DQIFIGVFSACSAL 524 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~--~-d~-------~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd---~~Ty~~LL~a~~~~ 524 (773)
.|+.++|+..|++..+ | +. ..|..+-..+...|++++|++.|++..+. .|+ ..++..+-.++..
T Consensus 89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~- 165 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYN- 165 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHH-
Confidence 9999999999998874 3 44 45888888999999999999999999874 676 3456666666644
Q ss_pred CChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCH
Q 004114 525 GDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDV 579 (773)
Q Consensus 525 G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~ 579 (773)
.+..+++.+... ...+...|..+. ....+.+++|...|++. .+.|+.
T Consensus 166 ----~~~~~~~~a~~~--~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 166 ----NGADVLRKATPL--ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp ----HHHHHHHHHGGG--TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ----HHHHHHHHHHhc--ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCC
Confidence 344445555332 122333443333 33456688899888876 444543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.48 E-value=1e-05 Score=87.58 Aligned_cols=214 Identities=11% Similarity=-0.050 Sum_probs=159.4
Q ss_pred HHHHHHhcCChhHHHHhhhh---------------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-----CHHHHH
Q 004114 356 VLNNCKHEDDFAEASRSSQN---------------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCI-SV-----DLPTFS 414 (773)
Q Consensus 356 LI~~y~k~g~~~~A~~v~~~---------------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv-~P-----d~~ty~ 414 (773)
+-..+...|++++|...+.. ..+..+-..|...|++++|+..+.+..+.-- .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44567788999999885311 1112377788999999999999998875311 11 235778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC-CC----HHHHHHHHHHHHhCCChHHHHHHHHHhhc-----CC----HhHHH
Q 004114 415 QLMQACGDAKALEEAKAVHEHVERLLSP-LR----VSTYNGILKMYSECDSMDDAFSVFSNMTE-----RD----LTSWD 480 (773)
Q Consensus 415 ~LL~a~~~~g~le~A~~l~~~m~k~G~~-pd----~~tynaLI~ay~k~G~l~eA~~lf~~M~~-----~d----~~tyn 480 (773)
.+-.++...|++++|...+...++..-. .+ ..++..|-.+|.+.|++++|+..|++..+ .+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888899999999999999988765111 12 34788899999999999999999988764 33 45788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHhcCCCCC-cchhhh
Q 004114 481 TMITGFAKNGLGEDAVDIFSQFKQAG----LKPDDQIFIGVFSACSALGD---VVEGMLHFESMSKDYGIVPS-MKHYVS 552 (773)
Q Consensus 481 ~LI~ay~~~G~~deAl~Lf~eM~~~G----v~Pd~~Ty~~LL~a~~~~G~---~deA~~if~~M~~~~Gi~Pd-~~tyn~ 552 (773)
.+...|.+.|++++|+..|++..+.. -......+..+-..+...|+ +++|..+++.. +..|+ ...+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK----MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----cCHHHHHHHHHH
Confidence 89999999999999999999876531 11112345667777778888 77777777655 23332 456778
Q ss_pred HHHHHHhCCCHHHHHHHHHhC
Q 004114 553 IVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 553 LI~~y~r~G~l~eA~~lf~~M 573 (773)
|...|.+.|++++|.+.|++.
T Consensus 345 la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 899999999999999999864
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.45 E-value=3.7e-06 Score=90.00 Aligned_cols=177 Identities=12% Similarity=0.099 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-----CHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 429 AKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER-----DLTSWDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 429 A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~-----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
|...++++++.+ .++..+...+..+|...|++++|++++.+.... +...+-.++..|.+.|+.+.|.+++++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555554443 334444445666666667777777777665322 34556666677777777777777777776
Q ss_pred HCCCCC-----CHHHHHHHHHHHHc----CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-
Q 004114 504 QAGLKP-----DDQIFIGVFSACSA----LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM- 573 (773)
Q Consensus 504 ~~Gv~P-----d~~Ty~~LL~a~~~----~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M- 573 (773)
+. .| +..+...|+.++.. .++..+|..+|+++... .|+..+-..|+.++.+.|++++|.++++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 53 45 24455555555222 23677777777776543 233223334444677777777777777654
Q ss_pred CC----------CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 574 PM----------EP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 574 ~~----------~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
.. .| |..+...+|......|+ .|.+.++.+.+..|+++
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 11 13 45566566666666675 67888888888888886
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.45 E-value=2.5e-06 Score=91.27 Aligned_cols=189 Identities=11% Similarity=0.063 Sum_probs=139.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS-PLRVSTYNGILKMYSECD 459 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~-~pd~~tynaLI~ay~k~G 459 (773)
++..|...+ |+..|++..+.+ .++..++..+..++...|++++|++++...+..+- .-+...+..++..|.+.|
T Consensus 76 ~la~~~~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~ 150 (310)
T 3mv2_B 76 LYVQFLDTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN 150 (310)
T ss_dssp HHHHHHTTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC
Confidence 455555433 778888877665 56677777888889999999999999998877653 235778888999999999
Q ss_pred ChHHHHHHHHHhhc--CC-----HhHHHHHHHH--HHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChH
Q 004114 460 SMDDAFSVFSNMTE--RD-----LTSWDTMITG--FAKNG--LGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVV 528 (773)
Q Consensus 460 ~l~eA~~lf~~M~~--~d-----~~tyn~LI~a--y~~~G--~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~d 528 (773)
+.+.|.+++++|.+ || ..+..-|+.+ ....| +..+|+.+|+++.+. .|+..+-..|+.++.+.|+++
T Consensus 151 r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~ 228 (310)
T 3mv2_B 151 NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIA 228 (310)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHH
Confidence 99999999999974 41 4555556655 33334 899999999998764 466445555666889999999
Q ss_pred HHHHHHHHHHHhc-CC-------CCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC
Q 004114 529 EGMLHFESMSKDY-GI-------VPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD 578 (773)
Q Consensus 529 eA~~if~~M~~~~-Gi-------~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd 578 (773)
+|...++.+.+.+ .+ +-+..+...+|......|+ +|.+++.++ ...|+
T Consensus 229 eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 229 EAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 9999998776532 00 2356666566666677787 889999888 34555
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.44 E-value=7.6e-06 Score=83.60 Aligned_cols=184 Identities=10% Similarity=0.000 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHhhc--C----CHhHH
Q 004114 409 DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR---VSTYNGILKMYSECDSMDDAFSVFSNMTE--R----DLTSW 479 (773)
Q Consensus 409 d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd---~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~----d~~ty 479 (773)
+...+-.+...+.+.|++++|...|+.+++.... + ..++..+..+|.+.|++++|+..|++..+ | ...+|
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3444445555555666666666666666554211 2 44555556666666666666666665542 2 12344
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchh
Q 004114 480 DTMITGFAK--------NGLGEDAVDIFSQFKQAGLKPDDQ-IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHY 550 (773)
Q Consensus 480 n~LI~ay~~--------~G~~deAl~Lf~eM~~~Gv~Pd~~-Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~ty 550 (773)
..+..+|.. .|++++|+..|++..+.. |+.. ....+ ..+..+... -...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHHHH
Confidence 445555555 566666666666655532 3211 11110 000000000 00113
Q ss_pred hhHHHHHHhCCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CChhHHHHHHHHHHHcCCCCch
Q 004114 551 VSIVDMLGSTGYLDEALEFIEKM-PMEPD----VDVWEKLMNLCRMH----------GNLELGDRCAEIVEQLDPSRLN 614 (773)
Q Consensus 551 n~LI~~y~r~G~l~eA~~lf~~M-~~~Pd----~~ty~~LI~a~~~~----------G~~e~A~~~~e~m~el~p~~~~ 614 (773)
..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++.+.+..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 45677788899999999988876 22233 35666777777765 8889999999999999998853
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.5e-05 Score=94.24 Aligned_cols=218 Identities=8% Similarity=-0.011 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 004114 392 KEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAK-AVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSN 470 (773)
Q Consensus 392 ~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~-~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~ 470 (773)
+.+..+|++.+.. +.-+...|-..+.-+...|+.++|. .+++..+.. ++.+...|-.++...-+.|+++.|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455677777665 3346667777777777888888996 999999875 455777888899999999999999999998
Q ss_pred hhc-------------CC------------HhHHHHHHHHHHHcCChHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHc
Q 004114 471 MTE-------------RD------------LTSWDTMITGFAKNGLGEDAVDIFSQFKQA-G-LKPDDQIFIGVFSACSA 523 (773)
Q Consensus 471 M~~-------------~d------------~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~-G-v~Pd~~Ty~~LL~a~~~ 523 (773)
+.+ |+ ...|-..+....+.|..+.|..+|.+.++. + ..+...+..+.|.-. .
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-I 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-T
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-h
Confidence 764 31 236888888888899999999999999876 2 233333333333322 2
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChhHH
Q 004114 524 LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP----DVDVWEKLMNLCRMHGNLELG 598 (773)
Q Consensus 524 ~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P----d~~ty~~LI~a~~~~G~~e~A 598 (773)
.++.+.|..+|+...+.+. -+...+...++.....|+.+.|..+|+.. ...| ....|...+..=.++|+.+.+
T Consensus 483 ~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3569999999999888733 35566778888888999999999999986 3233 357899999999999999999
Q ss_pred HHHHHHHHHcCCCCch
Q 004114 599 DRCAEIVEQLDPSRLN 614 (773)
Q Consensus 599 ~~~~e~m~el~p~~~~ 614 (773)
..+.+.+.+..|++..
T Consensus 561 ~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHhCCCCcH
Confidence 9999999999998753
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.32 E-value=8.6e-06 Score=96.43 Aligned_cols=187 Identities=10% Similarity=-0.024 Sum_probs=147.5
Q ss_pred HhcCCHHHHHHHHHHHH--------HhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHc
Q 004114 421 GDAKALEEAKAVHEHVE--------RLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKN 489 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~--------k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~ 489 (773)
...|++++|.+.++..+ +. .+.+...+..+..+|.+.|++++|+..|++..+ | +...|..+-.+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999988 32 234567888889999999999999999998874 3 778999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHH
Q 004114 490 GLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALE 568 (773)
Q Consensus 490 G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~ 568 (773)
|++++|++.|++..+.. | +...+..+-.++...|++++ +..|++..+. -+-+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998753 4 45678888889999999999 9999888664 22356788899999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHcCC-----hhHHHHHHHHHHHcCCCCc
Q 004114 569 FIEKM-PMEPD-VDVWEKLMNLCRMHGN-----LELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 569 lf~~M-~~~Pd-~~ty~~LI~a~~~~G~-----~e~A~~~~e~m~el~p~~~ 613 (773)
.|++. .+.|+ ...|..+..++...+. .+...++.+.+.++.+..+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~ 607 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEP 607 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTST
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcH
Confidence 99988 56676 5677777777766565 3555666667776655543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-05 Score=84.79 Aligned_cols=185 Identities=14% Similarity=0.032 Sum_probs=124.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---------CHhHH
Q 004114 414 SQLMQACGDAKALEEAKAVHEHVERL----LSPL-RVSTYNGILKMYSECDSMDDAFSVFSNMTER---------DLTSW 479 (773)
Q Consensus 414 ~~LL~a~~~~g~le~A~~l~~~m~k~----G~~p-d~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---------d~~ty 479 (773)
..+...+...|++++|...|.+..+. +-.. -..+|+.+..+|.+.|++++|+..|++..+- -..+|
T Consensus 40 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~ 119 (307)
T 2ifu_A 40 AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMAL 119 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33455677889999999988877664 2111 1447788888899999999998888865421 13567
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhc---CCCCC-cchh
Q 004114 480 DTMITGFAKNGLGEDAVDIFSQFKQAG----LKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDY---GIVPS-MKHY 550 (773)
Q Consensus 480 n~LI~ay~~~G~~deAl~Lf~eM~~~G----v~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~---Gi~Pd-~~ty 550 (773)
..+...|.. |++++|+..|++....- -.+ -..++..+...+...|++++|+.+|++..+.. +..+. ...+
T Consensus 120 ~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 120 DRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC 198 (307)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 778888887 99999999998876531 111 13567778888889999999999888876531 11111 2356
Q ss_pred hhHHHHHHhCCCHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCChhHHHH
Q 004114 551 VSIVDMLGSTGYLDEALEFIEKMPMEPD------VDVWEKLMNLCRMHGNLELGDR 600 (773)
Q Consensus 551 n~LI~~y~r~G~l~eA~~lf~~M~~~Pd------~~ty~~LI~a~~~~G~~e~A~~ 600 (773)
..+..++...|++++|...|++.-+.|+ ..+...++.++ ..|+.+.+..
T Consensus 199 ~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 199 IAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 6666777788999999998876423332 12344555555 4666655544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.25 E-value=5.6e-05 Score=81.76 Aligned_cols=212 Identities=11% Similarity=0.040 Sum_probs=156.4
Q ss_pred HHHHhcCChhHHHHhhhh---------------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C---CC-CHHHHHHH
Q 004114 358 NNCKHEDDFAEASRSSQN---------------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQC--I---SV-DLPTFSQL 416 (773)
Q Consensus 358 ~~y~k~g~~~~A~~v~~~---------------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~G--v---~P-d~~ty~~L 416 (773)
..+...|++++|...+.. .....+-..|...|++++|+..+.+..+.- . .+ ...++..+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 445678999999985311 111236778899999999999999886531 1 11 24577788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHhhc-----C---CHhHHHHHH
Q 004114 417 MQACGDAKALEEAKAVHEHVERL----LSPL-RVSTYNGILKMYSECDSMDDAFSVFSNMTE-----R---DLTSWDTMI 483 (773)
Q Consensus 417 L~a~~~~g~le~A~~l~~~m~k~----G~~p-d~~tynaLI~ay~k~G~l~eA~~lf~~M~~-----~---d~~tyn~LI 483 (773)
-.++...|++++|.+.+...++. +..+ ...++..|-.+|...|+.++|+..|++..+ . ...++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 88899999999999999988764 2111 235788899999999999999999988764 2 356788889
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHcCCC---hHHHHHHHHHHHHhcCCCCC-cchhhhHHH
Q 004114 484 TGFAKNGLGEDAVDIFSQFKQAGL---KPD-DQIFIGVFSACSALGD---VVEGMLHFESMSKDYGIVPS-MKHYVSIVD 555 (773)
Q Consensus 484 ~ay~~~G~~deAl~Lf~eM~~~Gv---~Pd-~~Ty~~LL~a~~~~G~---~deA~~if~~M~~~~Gi~Pd-~~tyn~LI~ 555 (773)
..|.+.|++++|+..+++..+.-- .|. ...+..+-..+...++ +.+|..+++.. +..|+ ...+..|..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHH
Confidence 999999999999999999877422 122 3345555556667777 77777777653 22232 356667889
Q ss_pred HHHhCCCHHHHHHHHHhC
Q 004114 556 MLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 556 ~y~r~G~l~eA~~lf~~M 573 (773)
.|...|++++|.+.|++.
T Consensus 345 ~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 999999999999999864
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00041 Score=74.09 Aligned_cols=229 Identities=10% Similarity=0.049 Sum_probs=176.1
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-
Q 004114 381 QLDGLVKEGKV-KEAIEVLGLLEKQCISVD-LPTFSQLMQACGDAK--ALEEAKAVHEHVERLLSPLRVSTYNGILKMY- 455 (773)
Q Consensus 381 LI~a~~~~G~~-~eAl~lf~~M~~~Gv~Pd-~~ty~~LL~a~~~~g--~le~A~~l~~~m~k~G~~pd~~tynaLI~ay- 455 (773)
.+.+..+.|.. ++|++++++++.. .|+ ...|+.--.++...+ .+++++.+++.++....+ +..+|+.--..+
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~ 114 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIG 114 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHH
Confidence 44555555555 6899999999886 454 446777777777788 999999999999997644 455666544444
Q ss_pred ---HhC---CChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 004114 456 ---SEC---DSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGE--DAVDIFSQFKQAGLKPDDQIFIGVFSACSAL 524 (773)
Q Consensus 456 ---~k~---G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~d--eAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~ 524 (773)
.+. +++++++.+++.+.+ ++..+|+--.-.+.+.|.++ ++++++++|.+.... |...|..-...+.+.
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSS
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 555 789999999999984 47788888888888899988 999999999987654 666777666666676
Q ss_pred CC------hHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHc
Q 004114 525 GD------VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDE-ALEFIEKM-PM----EPDVDVWEKLMNLCRMH 592 (773)
Q Consensus 525 G~------~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~e-A~~lf~~M-~~----~Pd~~ty~~LI~a~~~~ 592 (773)
+. ++++++.+..+... -+-|...|+-+-..+.+.|+..+ +.++++++ .. ..+...+..|..++.+.
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred cccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 76 88899998888765 34467888888888888888444 66677766 21 24678999999999999
Q ss_pred CChhHHHHHHHHHHH-cCCCCchH
Q 004114 593 GNLELGDRCAEIVEQ-LDPSRLNE 615 (773)
Q Consensus 593 G~~e~A~~~~e~m~e-l~p~~~~~ 615 (773)
|+.++|.++++.+.+ .+|.+.+.
T Consensus 272 ~~~~~A~~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 272 KKYNESRTVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCHHHHHHHHHHHHhccChHHHHH
Confidence 999999999999986 79876543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.7e-05 Score=78.40 Aligned_cols=156 Identities=17% Similarity=0.104 Sum_probs=104.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCCHHHHHHHHH
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVD----LPTFSQLMQACGDAKALEEAKAVHEHVERLLS--PLRVSTYNGILK 453 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd----~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~--~pd~~tynaLI~ 453 (773)
.+...+.+.|++++|+..|+++.+.. |+ ...+..+..++...|++++|...|+.+++... +....++..+..
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence 36677889999999999999998763 33 56777888889999999999999999998732 122456777788
Q ss_pred HHHh--------CCChHHHHHHHHHhhc--C-CHhHH-----------------HHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 454 MYSE--------CDSMDDAFSVFSNMTE--R-DLTSW-----------------DTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 454 ay~k--------~G~l~eA~~lf~~M~~--~-d~~ty-----------------n~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
+|.+ .|++++|+..|+++.+ | +...+ -.+...|.+.|++++|+..|+++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888 9999999999998874 3 22333 23344555556666666666555543
Q ss_pred CCCCC----HHHHHHHHHHHHcC----------CChHHHHHHHHHHHH
Q 004114 506 GLKPD----DQIFIGVFSACSAL----------GDVVEGMLHFESMSK 539 (773)
Q Consensus 506 Gv~Pd----~~Ty~~LL~a~~~~----------G~~deA~~if~~M~~ 539 (773)
. |+ ...+..+..++... |++++|..+|+.+.+
T Consensus 178 ~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 178 Y--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp C--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred C--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 2 22 22344444444433 555555555555544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.4e-05 Score=80.90 Aligned_cols=161 Identities=9% Similarity=-0.009 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--CCHhHHHH-HHHH
Q 004114 409 DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--RDLTSWDT-MITG 485 (773)
Q Consensus 409 d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~d~~tyn~-LI~a 485 (773)
+...+..+...+...|++++|..+++.+++.. +-+...+..|..+|.+.|+.++|+.+|+++.+ |+...... +...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 33455556666667777777777777777653 22456667777777777777777777777653 43332222 2223
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHH
Q 004114 486 FAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDE 565 (773)
Q Consensus 486 y~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~e 565 (773)
+...++.++|+..|++..... ..+...+..+..++...|++++|+..|.++.+...-..+...+..|..+|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 555666666666666666542 1234456666666666777777776666665531101113455556666666666555
Q ss_pred HHHHHH
Q 004114 566 ALEFIE 571 (773)
Q Consensus 566 A~~lf~ 571 (773)
|...++
T Consensus 274 a~~~~r 279 (287)
T 3qou_A 274 LASXYR 279 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.21 E-value=4e-05 Score=76.84 Aligned_cols=182 Identities=13% Similarity=0.035 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CC-HHHHHHHHHHHHhCCChHHHHHHHHHhhc--CCH----hHHHH
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSP-LR-VSTYNGILKMYSECDSMDDAFSVFSNMTE--RDL----TSWDT 481 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~-pd-~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~d~----~tyn~ 481 (773)
...+-.+...+...|++++|...|+.+++.... +. ...+..+..+|.+.|++++|+..|+++.+ |+. .+|-.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 444555666777888899999999888876322 11 34677778888888888888888888763 321 13444
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHhcC
Q 004114 482 MITGFAK------------------NGLGEDAVDIFSQFKQAGLKPDDQ-IFIGVFSACSALGDVVEGMLHFESMSKDYG 542 (773)
Q Consensus 482 LI~ay~~------------------~G~~deAl~Lf~eM~~~Gv~Pd~~-Ty~~LL~a~~~~G~~deA~~if~~M~~~~G 542 (773)
+..+|.. .|+.++|+..|+++.+. .|+.. +...+. +. ..+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l------~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RL------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HH------HHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HH------HHHHHHHH----
Confidence 4444443 34556666666655543 23321 111000 00 00000000
Q ss_pred CCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 543 IVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD----VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 543 i~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd----~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
...-.+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.+.|...++.+....|.+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 01124566788999999999999887 22343 2568888999999999999999999999888776
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.7e-05 Score=89.43 Aligned_cols=145 Identities=7% Similarity=-0.090 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHH
Q 004114 424 KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFS 500 (773)
Q Consensus 424 g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~ 500 (773)
|++++|...+++.++.. +-+...+..+..+|.+.|++++|++.|++..+ | +...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555555544432 12344455555555555555555555554442 1 34444555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhC---CCHHHHHHHHHh
Q 004114 501 QFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST---GYLDEALEFIEK 572 (773)
Q Consensus 501 eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~---G~l~eA~~lf~~ 572 (773)
+..+.. .-+...+..+..++...|++++|...|++..+. -+-+...+..+..+|... |+.++|.+.+++
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 544431 112334444444444445555554444444332 111233334444444444 444444444443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.19 E-value=4.5e-05 Score=80.52 Aligned_cols=195 Identities=10% Similarity=0.048 Sum_probs=137.2
Q ss_pred cCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004114 363 EDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQ----CISVD-LPTFSQLMQACGDAKALEEAKAVHEHVE 437 (773)
Q Consensus 363 ~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~----Gv~Pd-~~ty~~LL~a~~~~g~le~A~~l~~~m~ 437 (773)
.+++++|...+. .+...|...|++++|++.|.+..+. +-.+. ..+|..+..++...|++++|...+++.+
T Consensus 29 ~~~~~~A~~~~~-----~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 29 KPDYDSAASEYA-----KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp SCCHHHHHHHHH-----HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred CCCHHHHHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 467777777422 2456778888888888888877543 11111 3477888888999999999999999877
Q ss_pred Hh----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-----C----HhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 438 RL----LSPL-RVSTYNGILKMYSECDSMDDAFSVFSNMTER-----D----LTSWDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 438 k~----G~~p-d~~tynaLI~ay~k~G~l~eA~~lf~~M~~~-----d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
+. |-.. -..++..|-.+|.+ |++++|+..|++..+- + ..+|..+...|.+.|++++|+..|++..
T Consensus 104 ~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 104 VMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 2111 14577888888988 9999999999877631 1 4678889999999999999999999987
Q ss_pred HC----CCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcc------hhhhHHHHHHhCCCHHHHHH
Q 004114 504 QA----GLKPDD-QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMK------HYVSIVDMLGSTGYLDEALE 568 (773)
Q Consensus 504 ~~----Gv~Pd~-~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~------tyn~LI~~y~r~G~l~eA~~ 568 (773)
.. +..+.. .++..+..++...|++++|...|++.. +.|+.. ....++.++ ..|+.+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al----~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 183 SMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY----SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT----TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh----CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 63 222222 256677777788899999999998874 234321 223344444 4566665555
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.3e-05 Score=82.20 Aligned_cols=161 Identities=9% Similarity=-0.029 Sum_probs=128.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HH
Q 004114 442 PLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFI-GV 517 (773)
Q Consensus 442 ~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~-~L 517 (773)
+.+...+..+...+.+.|++++|+.+|++..+ | +...+..|...|.+.|++++|+.+|++.... .|+..... .+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 44556777888889999999999999998873 4 6788999999999999999999999988664 46654332 22
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcC
Q 004114 518 FSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD---VDVWEKLMNLCRMHG 593 (773)
Q Consensus 518 L~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd---~~ty~~LI~a~~~~G 593 (773)
...+...+..++|...+++..+. -+.+...+..|..+|...|++++|.+.|.++ ...|+ ...+..|...+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 33466778888898888887664 2345788899999999999999999999987 33443 678999999999999
Q ss_pred ChhHHHHHHHHHH
Q 004114 594 NLELGDRCAEIVE 606 (773)
Q Consensus 594 ~~e~A~~~~e~m~ 606 (773)
+.+.|...++...
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999887776544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.1e-05 Score=91.64 Aligned_cols=182 Identities=13% Similarity=0.041 Sum_probs=147.5
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 386 VKEGKVKEAIEVLGLLE--------KQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 386 ~~~G~~~eAl~lf~~M~--------~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
...|++++|++.|++.. +. -..+...+..+..++...|++++|...++.+++.. +-+...|..+-.+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78899999999999998 32 13355678888889999999999999999999874 3367889999999999
Q ss_pred CCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 004114 458 CDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 458 ~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if 534 (773)
.|++++|++.|++..+ | +...|..+..+|.+.|++++ ++.|++..+..- -+...|..+-.++...|++++|+..|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998873 4 67889999999999999999 999999987532 24568889999999999999999999
Q ss_pred HHHHHhcCCCCC-cchhhhHHHHHHhCC--------CHHHHHHHHHhCC
Q 004114 535 ESMSKDYGIVPS-MKHYVSIVDMLGSTG--------YLDEALEFIEKMP 574 (773)
Q Consensus 535 ~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G--------~l~eA~~lf~~M~ 574 (773)
++.. .+.|+ ...+..+..+|...+ ++++|.+.+..+.
T Consensus 558 ~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 558 DEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred Hhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 8764 35565 456666777765544 4777888887774
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.5e-05 Score=75.16 Aligned_cols=154 Identities=10% Similarity=0.007 Sum_probs=101.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHc
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSA-CSA 523 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a-~~~ 523 (773)
+..+...+.+.|++++|+..|++..+ .+...|..+...|...|++++|+..|++.... .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34455667777888888888877653 35677777788888888888888888776543 2333322221111 112
Q ss_pred CCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCChhHH
Q 004114 524 LGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD---VDVWEKLMNLCRMHGNLELG 598 (773)
Q Consensus 524 ~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd---~~ty~~LI~a~~~~G~~e~A 598 (773)
.+...+|...+++..+. .| +...+..+..+|...|++++|.+.|+++ ...|+ ...+..|...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233466677666553 34 4677778888888888888888888876 44443 55788888888888888888
Q ss_pred HHHHHHHH
Q 004114 599 DRCAEIVE 606 (773)
Q Consensus 599 ~~~~e~m~ 606 (773)
...++...
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=6.2e-05 Score=73.64 Aligned_cols=91 Identities=7% Similarity=-0.094 Sum_probs=67.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCh
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDV 527 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~ 527 (773)
+..+...|.+.|++++|+..|++...++..+|..+...|...|++++|+..|++..+.. ..+..++..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44556667777888888888887777777788888888888888888888888777643 22456677777777788888
Q ss_pred HHHHHHHHHHHH
Q 004114 528 VEGMLHFESMSK 539 (773)
Q Consensus 528 deA~~if~~M~~ 539 (773)
++|...|+...+
T Consensus 88 ~~A~~~~~~al~ 99 (213)
T 1hh8_A 88 DLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887777755
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.16 E-value=4.8e-05 Score=75.50 Aligned_cols=177 Identities=11% Similarity=0.092 Sum_probs=83.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDL-PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~-~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
....+.+.|++++|+..|.+..+. .|+. ..|.. . ..... ..........+..+|.+.|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~---~~~~~---------------~~~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T---NVDKN---------------SEISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H---HSCTT---------------SHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h---hhcch---------------hhhhHHHHHHHHHHHHHCC
Confidence 445667888888888888888765 3332 22322 0 00000 0001112233555555566
Q ss_pred ChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCh--HHHHHH
Q 004114 460 SMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDV--VEGMLH 533 (773)
Q Consensus 460 ~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~--deA~~i 533 (773)
++++|+..|++..+ | +...|..+...|...|++++|+..|++..+. .|+ ..++..+-.++...|.. +.+...
T Consensus 69 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 66666666655542 2 4555555666666666666666666665553 232 33444444444333322 222333
Q ss_pred HHHHHHhcCCCCCcc--hhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 004114 534 FESMSKDYGIVPSMK--HYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKL 585 (773)
Q Consensus 534 f~~M~~~~Gi~Pd~~--tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~L 585 (773)
+... +.|+.. .+..+-.++...|++++|...|++. .+.|+......|
T Consensus 147 ~~~~-----~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 147 YKKL-----SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHH-----hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3222 122221 1222233344456666666666554 455665444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00018 Score=74.95 Aligned_cols=202 Identities=9% Similarity=-0.022 Sum_probs=132.0
Q ss_pred hHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhh------hhccHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CC
Q 004114 335 PNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSS------QNNGTLEQLDGLVKEGKVKEAIEVLGLLEKQC-IS 407 (773)
Q Consensus 335 ~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~------~~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~G-v~ 407 (773)
...+..+.+....|+..+...|...+... +++..... ....+...+..+...|++++|+.++.+..+.. ..
T Consensus 31 ~~~~s~~e~g~~~~~~~~l~~i~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~ 108 (293)
T 3u3w_A 31 QSEVSRIESGAVYPSMDILQGIAAKLQIP--IIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH 108 (293)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHHHHTCC--THHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCcC--HHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCC
Confidence 34445555555678888888887776643 11111110 01112235778889999999999999987642 22
Q ss_pred CCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CC----HHHHHHHHHHHHhCCChHHHHHHHHHhhc-----
Q 004114 408 VDLP----TFSQLMQACGDAKALEEAKAVHEHVERLLSP-LR----VSTYNGILKMYSECDSMDDAFSVFSNMTE----- 473 (773)
Q Consensus 408 Pd~~----ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~-pd----~~tynaLI~ay~k~G~l~eA~~lf~~M~~----- 473 (773)
|+.. .+..+...+...+++++|...+..+++.... .+ ..+++.|..+|.+.|++++|+..|+++.+
T Consensus 109 ~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 188 (293)
T 3u3w_A 109 PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 2321 2334555566777899999999988884222 22 34688888888899999999888887762
Q ss_pred -C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHcCCC-hHHHHHHHHHHH
Q 004114 474 -R----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA----GLKPD-DQIFIGVFSACSALGD-VVEGMLHFESMS 538 (773)
Q Consensus 474 -~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~----Gv~Pd-~~Ty~~LL~a~~~~G~-~deA~~if~~M~ 538 (773)
. ...+|..+...|.+.|++++|+..+++..+. +..+. ..+|..+-.++...|+ .++|...|++..
T Consensus 189 ~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 2246777888888888888888888776542 22232 4567777777777784 578877776543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.11 E-value=3.4e-05 Score=75.54 Aligned_cols=130 Identities=12% Similarity=0.032 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHH
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDM 556 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~ 556 (773)
..+..+...+...|++++|+..|++. +.|+..++..+..++...|++++|...|....+. .+.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 44566777888999999999999876 4678899999999999999999999999998765 23456788899999
Q ss_pred HHhCCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 557 LGSTGYLDEALEFIEKM-PMEP-----------------DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 557 y~r~G~l~eA~~lf~~M-~~~P-----------------d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
|.+.|++++|.+.|++. ...| ...+|..+..++...|+++.|...++...++.|..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999999877 2122 23788889999999999999999999999999875
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.3e-05 Score=75.84 Aligned_cols=127 Identities=11% Similarity=0.022 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHH
Q 004114 480 DTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDML 557 (773)
Q Consensus 480 n~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y 557 (773)
..+..+|.+.|++++|+..|++..+. .| +...+..+-.++...|++++|+..|++..+. .| +...+..|-.+|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHH
Confidence 34888999999999999999999885 35 4678888999999999999999999998764 35 467777887777
Q ss_pred HhCCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 558 GSTGY--LDEALEFIEKMPMEPDV--DVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 558 ~r~G~--l~eA~~lf~~M~~~Pd~--~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
...|. .++|...+.... .|+. ..|..+-.++...|++++|...++...++.|+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 66554 445666666552 3443 334444556667899999999999999999964
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00054 Score=71.34 Aligned_cols=202 Identities=11% Similarity=0.003 Sum_probs=138.2
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHH---HHHHHHHHHhCCChHHHHHHHHHhhcC
Q 004114 398 LGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVST---YNGILKMYSECDSMDDAFSVFSNMTER 474 (773)
Q Consensus 398 f~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~t---ynaLI~ay~k~G~l~eA~~lf~~M~~~ 474 (773)
+.++......|+..+...+...+.-.- + .+.......+... +...+..+.+.|++++|..++++..+.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~--~-------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPI--I-------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCT--H-------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCH--H-------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 444444445788777777766654321 1 1122212222332 333467788999999999999987642
Q ss_pred -----C----HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 004114 475 -----D----LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLK-PD----DQIFIGVFSACSALGDVVEGMLHFESMSKD 540 (773)
Q Consensus 475 -----d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~-Pd----~~Ty~~LL~a~~~~G~~deA~~if~~M~~~ 540 (773)
+ ...+..+...+...+++++|+..|++....... ++ ..+++.+..+|...|++++|..+|+++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 123444666777778999999999999874322 23 236888889999999999999999987642
Q ss_pred c----CCCCC-cchhhhHHHHHHhCCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCC-hhHHHHHHHHHH
Q 004114 541 Y----GIVPS-MKHYVSIVDMLGSTGYLDEALEFIEKM-------PMEPD-VDVWEKLMNLCRMHGN-LELGDRCAEIVE 606 (773)
Q Consensus 541 ~----Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M-------~~~Pd-~~ty~~LI~a~~~~G~-~e~A~~~~e~m~ 606 (773)
. +..+. ..+|..+...|.+.|++++|.+.+++. +..+. ..+|..+-.++...|+ .++|...++...
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 11111 347788889999999999999998765 22233 5688888889999995 599988888776
Q ss_pred Hc
Q 004114 607 QL 608 (773)
Q Consensus 607 el 608 (773)
++
T Consensus 265 ~i 266 (293)
T 3u3w_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00013 Score=72.61 Aligned_cols=170 Identities=8% Similarity=-0.070 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC----ChHHHHHHH
Q 004114 393 EAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD----SMDDAFSVF 468 (773)
Q Consensus 393 eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G----~l~eA~~lf 468 (773)
+|++.|.+..+.| +...+..|-..+...+++++|...|....+.| +...+..|-.+|.. + +.++|+..|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666677766654 56666667777777778888888887777765 45566666666666 5 777777777
Q ss_pred HHhhcC-CHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc----CCChHHHHHHHHHHH
Q 004114 469 SNMTER-DLTSWDTMITGFAK----NGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSA----LGDVVEGMLHFESMS 538 (773)
Q Consensus 469 ~~M~~~-d~~tyn~LI~ay~~----~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~----~G~~deA~~if~~M~ 538 (773)
++..++ +..++..|-..|.. .+++++|+.+|++..+.|... +...+..|-..|.. .++.++|+.+|++..
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 776544 55666666666665 667777777777766654210 13455555555555 566777777776654
Q ss_pred HhcCCCCCcchhhhHHHHHHhC-C-----CHHHHHHHHHh
Q 004114 539 KDYGIVPSMKHYVSIVDMLGST-G-----YLDEALEFIEK 572 (773)
Q Consensus 539 ~~~Gi~Pd~~tyn~LI~~y~r~-G-----~l~eA~~lf~~ 572 (773)
+. ..+...+..|-.+|... | ++++|.+.|+.
T Consensus 157 ~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~ 193 (212)
T 3rjv_A 157 SL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNV 193 (212)
T ss_dssp HT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHH
T ss_pred Hc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Confidence 42 22334455555555432 2 56666665554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.2e-05 Score=75.46 Aligned_cols=156 Identities=13% Similarity=0.123 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHhC
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKM-YSEC 458 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~a-y~k~ 458 (773)
.+...+.+.|++++|+.+|++..+.. +-+...+..+..++...|++++|...++.+.+.. |+...+..+... +.+.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 35556667777777777777665431 1245566666777777777777777777665542 233322222111 1122
Q ss_pred CChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHH
Q 004114 459 DSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHF 534 (773)
Q Consensus 459 G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if 534 (773)
+...+|+..|++..+ | +...|..+...|...|++++|+..|+++.+....+ +...+..+..++...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 223345666665542 3 46667777777777777777777777776643222 2345666666777777777777666
Q ss_pred HHHH
Q 004114 535 ESMS 538 (773)
Q Consensus 535 ~~M~ 538 (773)
.+..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00042 Score=77.61 Aligned_cols=248 Identities=10% Similarity=0.045 Sum_probs=156.6
Q ss_pred HHHHHHHHHHhcCChhHHHHhhhh----------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004114 352 MASQVLNNCKHEDDFAEASRSSQN----------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACG 421 (773)
Q Consensus 352 ~~n~LI~~y~k~g~~~~A~~v~~~----------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~ 421 (773)
.+..|-.+|...+..+++...+.+ .....|...|...+.++++++....+.+.-...+...+..|-..+.
T Consensus 108 A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~ 187 (452)
T 3e4b_A 108 TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQ 187 (452)
T ss_dssp CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455566666665554433221111 1222355666666655555554333333222223336777777777
Q ss_pred hcC---CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC----CChHHHHHHHHHhhcCCHhHHHHHHHH-H--HHcCC
Q 004114 422 DAK---ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC----DSMDDAFSVFSNMTERDLTSWDTMITG-F--AKNGL 491 (773)
Q Consensus 422 ~~g---~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~----G~l~eA~~lf~~M~~~d~~tyn~LI~a-y--~~~G~ 491 (773)
..| +.++|...|....+.|. ++...+..|-.+|... ++.++|+..|++....+...+..|-.. | ...++
T Consensus 188 ~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 188 KKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGD 266 (452)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCC
T ss_pred HcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Confidence 888 88899999988888874 4555556677777654 688999999988873366677777666 3 45788
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHh----CCC
Q 004114 492 GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALG-----DVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGS----TGY 562 (773)
Q Consensus 492 ~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G-----~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r----~G~ 562 (773)
.++|+.+|++..+.| +...+..|-..|. .| ++++|..+|.+.. .-+...+..|-.+|.. ..+
T Consensus 267 ~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 267 VEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCC
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcC
Confidence 999999999988876 4556666655565 44 8899998887664 2355666667766765 348
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcC
Q 004114 563 LDEALEFIEKMPMEPDVDVWEKLMNLCRM----HGNLELGDRCAEIVEQLD 609 (773)
Q Consensus 563 l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~----~G~~e~A~~~~e~m~el~ 609 (773)
.++|.+.|++.--.-+......|-..|.. ..+.++|...+++..+..
T Consensus 338 ~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 338 PQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 89999998876111123334444444442 346777777777666543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0002 Score=74.71 Aligned_cols=156 Identities=10% Similarity=-0.024 Sum_probs=88.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCC--HHHHH
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDL-----PTFSQLMQACGDAKALEEAKAVHEHVERLLS---PLR--VSTYN 449 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~-----~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~---~pd--~~tyn 449 (773)
..+..+...|++++|++.+.+..+....... ..+..+...+...|++++|...+...++... .+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3567777888888888888777664322111 1222334445566677777777776664321 111 34666
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhc-----CC-----HhHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCC-HHHH
Q 004114 450 GILKMYSECDSMDDAFSVFSNMTE-----RD-----LTSWDTMITGFAKNGLGEDAVDIFSQFKQAG----LKPD-DQIF 514 (773)
Q Consensus 450 aLI~ay~k~G~l~eA~~lf~~M~~-----~d-----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G----v~Pd-~~Ty 514 (773)
.+...|...|++++|+..|++..+ ++ +.+|..+...|...|++++|+..|++..+.. .... ..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666777777777777777765541 11 1456666666666666666666666654321 1111 3455
Q ss_pred HHHHHHHHcCCChHHH-HHHHH
Q 004114 515 IGVFSACSALGDVVEG-MLHFE 535 (773)
Q Consensus 515 ~~LL~a~~~~G~~deA-~~if~ 535 (773)
..+-.++...|+.++| ..+++
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHH
Confidence 5555566666666666 44443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=9.3e-05 Score=84.91 Aligned_cols=150 Identities=9% Similarity=-0.029 Sum_probs=100.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSV 467 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~l 467 (773)
.|++++|++.|++..+.. .-+...+..+..++...|++++|.+.+++.++.. +-+..++..+..+|.+.|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367778888888776542 2246677778888888888888888888887753 23567788888888888888888888
Q ss_pred HHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC---CChHHHHHHHHHHHHh
Q 004114 468 FSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL---GDVVEGMLHFESMSKD 540 (773)
Q Consensus 468 f~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~---G~~deA~~if~~M~~~ 540 (773)
|++..+ | +...|..+..+|.+.|++++|++.|++..+..- -+..++..+..++... |+.++|...+++..+.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 887653 3 567788888888888888888888888877531 2456777777888888 8888888888877654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00013 Score=70.31 Aligned_cols=95 Identities=13% Similarity=0.021 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC----c
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQA----GLKP--DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS----M 547 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~----Gv~P--d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd----~ 547 (773)
++..+...|...|++++|+..|.+.... +-.| ...++..+-..+...|++++|..++++..+...-..+ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444444444455555554444443321 1011 0123444444555555555555555543321000011 1
Q ss_pred chhhhHHHHHHhCCCHHHHHHHHHh
Q 004114 548 KHYVSIVDMLGSTGYLDEALEFIEK 572 (773)
Q Consensus 548 ~tyn~LI~~y~r~G~l~eA~~lf~~ 572 (773)
.++..+..++...|++++|.+.+++
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 2234445555555666555555543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00017 Score=72.29 Aligned_cols=177 Identities=15% Similarity=0.056 Sum_probs=103.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CCH-HHHHHHHHH
Q 004114 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCIS-VD-LPTFSQLMQACGDAKALEEAKAVHEHVERLLSP-LRV-STYNGILKM 454 (773)
Q Consensus 379 ~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~-Pd-~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~-pd~-~tynaLI~a 454 (773)
..+...+.+.|++++|+..|+++.+.... |. ...+..+..++.+.|++++|...|+.+++.... +.. ..+-.+..+
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence 34667889999999999999999875321 21 356777888999999999999999999987432 221 233334444
Q ss_pred HHh------------------CCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 004114 455 YSE------------------CDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQI 513 (773)
Q Consensus 455 y~k------------------~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~T 513 (773)
|.+ .|+.++|+..|+++.+ | +...+.++... ..+...+. ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l----------~~~~~~~~--------~~ 149 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL----------VFLKDRLA--------KY 149 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH----------HHHHHHHH--------HH
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH----------HHHHHHHH--------HH
Confidence 443 6789999999999885 3 22333221110 00000000 01
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 514 FIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 514 y~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
...+...+...|++++|+..|+.+.+.+.-.| ....+..+..+|.+.|+.++|.+.++.+
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 12233444555666666666665554421111 0134455555666666666666655544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00017 Score=75.11 Aligned_cols=161 Identities=12% Similarity=0.006 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcC---C------HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTER---D------LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL---KPD--DQ 512 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~~---d------~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv---~Pd--~~ 512 (773)
.+...+..+...|++++|.+.+.+..+. . ...+..+...|...|++++|+..|.+...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455677778888888888888765431 1 12234455566777888888888888765321 122 34
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-----cchhhhHHHHHHhCCCHHHHHHHHHhC-------CCCCC-H
Q 004114 513 IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS-----MKHYVSIVDMLGSTGYLDEALEFIEKM-------PMEPD-V 579 (773)
Q Consensus 513 Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-----~~tyn~LI~~y~r~G~l~eA~~lf~~M-------~~~Pd-~ 579 (773)
+|..+-..|...|++++|..+|++..+.....|+ ..++..+..+|.+.|++++|.+.+++. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7777888888888888888888877632111222 247777888888888888888888765 11111 5
Q ss_pred HHHHHHHHHHHHcCChhHH-HHHHHHHHH
Q 004114 580 DVWEKLMNLCRMHGNLELG-DRCAEIVEQ 607 (773)
Q Consensus 580 ~ty~~LI~a~~~~G~~e~A-~~~~e~m~e 607 (773)
.+|..+-.++...|+.++| ...++...+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6777788888888888888 666665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.93 E-value=7.9e-05 Score=83.54 Aligned_cols=262 Identities=11% Similarity=-0.004 Sum_probs=132.6
Q ss_pred HHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---hHHHHhhh------hccHHHHHHHHHHcC-----CHHHH
Q 004114 329 RQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDF---AEASRSSQ------NNGTLEQLDGLVKEG-----KVKEA 394 (773)
Q Consensus 329 ~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~---~~A~~v~~------~~~~~~LI~a~~~~G-----~~~eA 394 (773)
+.++.+........+.|. +..+..|-.+|...|+. ++|...+. ......|-..+...+ +.++|
T Consensus 17 g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A 93 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEA 93 (452)
T ss_dssp HHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 344444444444444442 22233444555556666 67766432 111122333344444 67888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC----ChHHHHHH
Q 004114 395 IEVLGLLEKQCISVDLPTFSQLMQACGDAKAL---EEAKAVHEHVERLLSPLRVSTYNGILKMYSECD----SMDDAFSV 467 (773)
Q Consensus 395 l~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~l---e~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G----~l~eA~~l 467 (773)
+..|++..+.|... .+..|-..|...+.. ..+.+.+......|. ......|..+|...+ .+++|..+
T Consensus 94 ~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 94 ESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 88888888876432 344444444443332 234444444444443 234455556666655 34445555
Q ss_pred HHHhhcCCHhHHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC----CChHHHHHHHHHHHHh
Q 004114 468 FSNMTERDLTSWDTMITGFAKNG---LGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL----GDVVEGMLHFESMSKD 540 (773)
Q Consensus 468 f~~M~~~d~~tyn~LI~ay~~~G---~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~----G~~deA~~if~~M~~~ 540 (773)
+......+...+..|-..|...| +.++|+..|++..+.|. ++...+..|-..|... ++.++|..+|+...
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-- 244 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-- 244 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--
Confidence 55555555567777777777777 77777777777777653 3344334444444333 57777777777653
Q ss_pred cCCCCCcchhhhHHHH-H--HhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHH
Q 004114 541 YGIVPSMKHYVSIVDM-L--GSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHG-----NLELGDRCAEIVE 606 (773)
Q Consensus 541 ~Gi~Pd~~tyn~LI~~-y--~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G-----~~e~A~~~~e~m~ 606 (773)
+-+...+..|-.+ | ...+++++|.+.|++.--.-+...+..|-..|. .| +.++|...++...
T Consensus 245 ---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 245 ---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp ---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred ---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 2244455555555 3 356777777777776511124555555555555 44 6666666666555
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00015 Score=69.82 Aligned_cols=154 Identities=12% Similarity=-0.013 Sum_probs=109.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCC-CHHHHHHHHHHHHhCC
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL----LSPL-RVSTYNGILKMYSECD 459 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~----G~~p-d~~tynaLI~ay~k~G 459 (773)
+...|++++|.+++..+... ......++..+-..+...|++++|...+.+.++. +..+ ...++..+...|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 34678888998855544332 2235567888888888999999999999888773 2222 2457788888999999
Q ss_pred ChHHHHHHHHHhhc-----C-C----HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcC
Q 004114 460 SMDDAFSVFSNMTE-----R-D----LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL-KPD----DQIFIGVFSACSAL 524 (773)
Q Consensus 460 ~l~eA~~lf~~M~~-----~-d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv-~Pd----~~Ty~~LL~a~~~~ 524 (773)
++++|+..|++..+ + + ..++..+...+...|++++|+..+++.....- ..+ ..++..+..++...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 99999999987653 2 2 34577888899999999999999988764211 112 23457777888899
Q ss_pred CChHHHHHHHHHHHH
Q 004114 525 GDVVEGMLHFESMSK 539 (773)
Q Consensus 525 G~~deA~~if~~M~~ 539 (773)
|++++|..++.+..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999988876643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00031 Score=61.24 Aligned_cols=92 Identities=15% Similarity=0.256 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHH
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAK 488 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~ 488 (773)
++..+...+...|++++|..++..+++.. +.+..++..+..+|.+.|++++|+.+|+++.+ .+..+|..+...|..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 34444444444555555555554444432 12334444444444444444444444444431 133344444444444
Q ss_pred cCChHHHHHHHHHHHH
Q 004114 489 NGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 489 ~G~~deAl~Lf~eM~~ 504 (773)
.|++++|+.+|+++.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 4444444444444433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00019 Score=66.63 Aligned_cols=14 Identities=14% Similarity=-0.069 Sum_probs=5.8
Q ss_pred HcCChhHHHHHHHH
Q 004114 591 MHGNLELGDRCAEI 604 (773)
Q Consensus 591 ~~G~~e~A~~~~e~ 604 (773)
..|++++|...++.
T Consensus 129 ~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 129 KQKAFERAIAGDEH 142 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccc
Confidence 33444444444433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00051 Score=59.77 Aligned_cols=94 Identities=13% Similarity=0.265 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSAC 521 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~ 521 (773)
..++..+...|.+.|++++|+++|+++.+ .+..+|..+...|...|++++|+.+|+++.... ..+..++..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 34555666666666666666666666542 245566666666666666666666666666542 22445566666666
Q ss_pred HcCCChHHHHHHHHHHHH
Q 004114 522 SALGDVVEGMLHFESMSK 539 (773)
Q Consensus 522 ~~~G~~deA~~if~~M~~ 539 (773)
...|++++|..+|+.+.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 666666666666666654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0014 Score=65.23 Aligned_cols=151 Identities=10% Similarity=-0.024 Sum_probs=120.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAK----ALEEAKAVHEHVERLLSPLRVSTYNGILKMYS 456 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g----~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~ 456 (773)
|-..|...+++++|++.|++..+.| +...+..|-..+.. + +.++|...|....+.| +...+..|-.+|.
T Consensus 24 lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~ 96 (212)
T 3rjv_A 24 LADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLV 96 (212)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 5566777889999999999998876 56677777777776 6 8999999999998876 5677888888888
Q ss_pred h----CCChHHHHHHHHHhhcCC-----HhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 004114 457 E----CDSMDDAFSVFSNMTERD-----LTSWDTMITGFAK----NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA 523 (773)
Q Consensus 457 k----~G~l~eA~~lf~~M~~~d-----~~tyn~LI~ay~~----~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~ 523 (773)
. .+++++|+..|++..+.+ ..++..|-..|.. .++.++|+.+|++..+.+ .+...+..|-..|..
T Consensus 97 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 97 NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQ 174 (212)
T ss_dssp CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHH
T ss_pred cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHc
Confidence 7 889999999999988653 6889999999998 889999999999998862 233455556566654
Q ss_pred C-C-----ChHHHHHHHHHHHHh
Q 004114 524 L-G-----DVVEGMLHFESMSKD 540 (773)
Q Consensus 524 ~-G-----~~deA~~if~~M~~~ 540 (773)
. | +.++|..+|+...+.
T Consensus 175 g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 175 GEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp CBTTTBCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHc
Confidence 3 3 899999999887665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0031 Score=67.99 Aligned_cols=235 Identities=11% Similarity=0.096 Sum_probs=161.7
Q ss_pred hccHHHHHHHHHHcCCHH-HHHHHHHHHHHCCCCCCHH-HHHH---HHHHHHhcC-------CHHHHHHHHHHHHHhCCC
Q 004114 375 NNGTLEQLDGLVKEGKVK-EAIEVLGLLEKQCISVDLP-TFSQ---LMQACGDAK-------ALEEAKAVHEHVERLLSP 442 (773)
Q Consensus 375 ~~~~~~LI~a~~~~G~~~-eAl~lf~~M~~~Gv~Pd~~-ty~~---LL~a~~~~g-------~le~A~~l~~~m~k~G~~ 442 (773)
+......+....+.|.+. +|++++++++.. .|+-. +|+. +|..+.... .+++++.+++.++....
T Consensus 29 y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P- 105 (331)
T 3dss_A 29 YQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP- 105 (331)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-
Confidence 344444566667777766 799999999875 45433 3443 333333221 26789999999988753
Q ss_pred CCHHHHHHHHHHHHhCC--ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHH
Q 004114 443 LRVSTYNGILKMYSECD--SMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGL-GEDAVDIFSQFKQAGLKPDDQIFIG 516 (773)
Q Consensus 443 pd~~tynaLI~ay~k~G--~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~-~deAl~Lf~eM~~~Gv~Pd~~Ty~~ 516 (773)
-+..+|+--.-++.+.+ .+++++.+++.|.+ ++-.+|+--.-.+...|. ++++++.++++.+..+. |...|+.
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~ 184 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHY 184 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHH
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 37788888777777888 48999999999985 477888888888888888 59999999999987643 5556655
Q ss_pred HHHHHHcC--------------CChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhC-----------CCHHHHHHHHH
Q 004114 517 VFSACSAL--------------GDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST-----------GYLDEALEFIE 571 (773)
Q Consensus 517 LL~a~~~~--------------G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~-----------G~l~eA~~lf~ 571 (773)
....+.+. +.++++++++...... -+-|...|+-+--.+.+. +.++++.+.++
T Consensus 185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 54444443 4577888888877654 233566676555555555 56889999988
Q ss_pred hC-CCCCCHHHHHHHHH-----HHHHcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 572 KM-PMEPDVDVWEKLMN-----LCRMHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 572 ~M-~~~Pd~~ty~~LI~-----a~~~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
++ .+.||. .|..+-. +....+..+++...+..+.+++|.....|
T Consensus 263 elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y 312 (331)
T 3dss_A 263 ELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 312 (331)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHH
Confidence 88 556764 3433222 22235666778888999999999764333
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=5.3e-05 Score=71.34 Aligned_cols=22 Identities=5% Similarity=-0.062 Sum_probs=8.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 004114 482 MITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 482 LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
|-..|.+.|++++|++.|++..
T Consensus 37 la~~y~~~~~~~~A~~~~~~al 58 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYI 58 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333444444444444444333
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00032 Score=65.01 Aligned_cols=125 Identities=10% Similarity=0.056 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSAC 521 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~ 521 (773)
...+..+...+.+.|++++|...|++..+ .+..+|..+...|...|++++|+..|++..+.. ..+..++..+..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34567777888888999999999887653 367788888888888999999999998887753 23466777888888
Q ss_pred HcCCChHHHHHHHHHHHHhcCCCCCcchh--hhHHHHHHhCCCHHHHHHHHHh
Q 004114 522 SALGDVVEGMLHFESMSKDYGIVPSMKHY--VSIVDMLGSTGYLDEALEFIEK 572 (773)
Q Consensus 522 ~~~G~~deA~~if~~M~~~~Gi~Pd~~ty--n~LI~~y~r~G~l~eA~~lf~~ 572 (773)
...|++++|..+|++..+.. +.+...+ -.++..+.+.|++++|.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 88899999998888876641 1233333 3344446677888888887765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00047 Score=61.16 Aligned_cols=92 Identities=10% Similarity=-0.021 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004114 446 STYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACS 522 (773)
Q Consensus 446 ~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~ 522 (773)
..+..+...|.+.|++++|+..|++..+ .+..+|..+...|...|++++|+..|++..+.. ..+..++..+..++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 3444444444444555555554444432 133444444444444555555555554444421 112334444444444
Q ss_pred cCCChHHHHHHHHHHH
Q 004114 523 ALGDVVEGMLHFESMS 538 (773)
Q Consensus 523 ~~G~~deA~~if~~M~ 538 (773)
..|++++|..+|++..
T Consensus 96 ~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 96 AMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 5555555555544443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0078 Score=65.33 Aligned_cols=218 Identities=8% Similarity=0.043 Sum_probs=158.1
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC-C-ChHHH
Q 004114 389 GKVKEAIEVLGLLEKQCISV-DLPTFSQLMQACGDAK-ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSEC-D-SMDDA 464 (773)
Q Consensus 389 G~~~eAl~lf~~M~~~Gv~P-d~~ty~~LL~a~~~~g-~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~-G-~l~eA 464 (773)
+..++|++++++++.. .| +..+|+.--.++...+ .+++++.+++.++....+ +..+|+----.+.+. + +.+++
T Consensus 68 e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 4456899999999886 34 4456676666666777 599999999999987543 677888877777766 6 88999
Q ss_pred HHHHHHhhcC---CHhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC-------
Q 004114 465 FSVFSNMTER---DLTSWDTMITGFAKNGLGE--------DAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD------- 526 (773)
Q Consensus 465 ~~lf~~M~~~---d~~tyn~LI~ay~~~G~~d--------eAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~------- 526 (773)
+++++.+.+. +..+|+--.-.+.+.|.++ ++++.+++|.+.... |...|+..-..+.+.+.
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHH
Confidence 9999999864 6677777666666666666 999999999987543 66778777777777775
Q ss_pred hHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCH--------------------HHHHHHHHhC-CC-------CCC
Q 004114 527 VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYL--------------------DEALEFIEKM-PM-------EPD 578 (773)
Q Consensus 527 ~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l--------------------~eA~~lf~~M-~~-------~Pd 578 (773)
++++++++.++... -+-|...|+-+--.+.+.|+- .+..++..++ .. .+.
T Consensus 224 ~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 224 LQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 67888888877664 233667777776677766653 4455555555 21 257
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHH-HcCCCC
Q 004114 579 VDVWEKLMNLCRMHGNLELGDRCAEIVE-QLDPSR 612 (773)
Q Consensus 579 ~~ty~~LI~a~~~~G~~e~A~~~~e~m~-el~p~~ 612 (773)
...+..|+..|...|+.++|.++++.+. +.+|-.
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir 336 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR 336 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence 8889999999999999999999999885 667644
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00064 Score=59.65 Aligned_cols=113 Identities=18% Similarity=0.048 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDML 557 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y 557 (773)
.|..+...+...|++++|+..|++..... ..+...+..+..++...|++++|..++....+. .+.+...+..+..+|
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHH
Confidence 34444444444555555555554444321 113334444444445555555555555444332 112233444444455
Q ss_pred HhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 004114 558 GSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHG 593 (773)
Q Consensus 558 ~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G 593 (773)
.+.|++++|.+.|++. ...| +...+..+..++...|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 5555555555555443 1122 3344444444444443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0001 Score=69.38 Aligned_cols=83 Identities=11% Similarity=0.043 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSA 523 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~ 523 (773)
+-.|-.+|.+.|++++|++.|++..+ | +..+|..+..+|...|++++|+..|++..+. .|+ ..++..+...+.+
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 33445555555555555555555442 2 4455555555555555555555555555542 232 3445555555555
Q ss_pred CCChHHHHH
Q 004114 524 LGDVVEGML 532 (773)
Q Consensus 524 ~G~~deA~~ 532 (773)
.|+.++|.+
T Consensus 112 ~~~~~~aa~ 120 (150)
T 4ga2_A 112 NDVTDGRAK 120 (150)
T ss_dssp HCSSSSHHH
T ss_pred cCChHHHHH
Confidence 555554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0013 Score=57.73 Aligned_cols=109 Identities=13% Similarity=0.031 Sum_probs=56.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
+...+...|++++|+..|.+..... ..+...+..+..++...|++++|...+...++.. +.+..++..+..+|.+.|+
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCC
Confidence 4455555666666666666655432 2244455555555556666666666666555542 2234455555555555555
Q ss_pred hHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCC
Q 004114 461 MDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGL 491 (773)
Q Consensus 461 l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~ 491 (773)
+++|+..|++..+ | +...+..+..++.+.|+
T Consensus 96 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 96 HVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 5555555554432 2 34444444444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00028 Score=67.17 Aligned_cols=119 Identities=6% Similarity=0.056 Sum_probs=83.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHhCCCh--
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKM-YSECDSM-- 461 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~a-y~k~G~l-- 461 (773)
+...|++++|+..|.+..+.. +.+...+..+..++...|++++|...+..+++.. +.+...+..+..+ |.+.|+.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345677777888887776653 2356677777788888888888888888877764 2356667777777 6677887
Q ss_pred HHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 462 DDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 462 ~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
++|+.+|+++.+ | +...|..+...|...|++++|+..|++..+.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888877663 3 5667777777888888888888888887764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00054 Score=65.12 Aligned_cols=89 Identities=13% Similarity=0.045 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCC
Q 004114 415 QLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGL 491 (773)
Q Consensus 415 ~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~ 491 (773)
.+-.++.+.|++++|...|+.+++.. +-+...|..|-.+|.+.|++++|+..|++..+ | +...|..+-.+|...|+
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA 119 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 33334444455555555555444432 12344455555555555555555555554431 2 34455555555555555
Q ss_pred hHHHHHHHHHHHH
Q 004114 492 GEDAVDIFSQFKQ 504 (773)
Q Consensus 492 ~deAl~Lf~eM~~ 504 (773)
+++|+..|++..+
T Consensus 120 ~~eA~~~~~~al~ 132 (151)
T 3gyz_A 120 PLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0011 Score=72.18 Aligned_cols=193 Identities=14% Similarity=0.051 Sum_probs=136.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVD----------------LPTFSQLMQACGDAKALEEAKAVHEHVERL-LSPL 443 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd----------------~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-G~~p 443 (773)
-...+.+.|++++|+++|.++.+..-... ...+..|...|...|++++|.+++..+.+. +-..
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34567788999999999999887532111 124677889999999999999999887764 1112
Q ss_pred CH----HHHHHHHHHHHhCCChHHHHHHHHHhhc-----C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CC-
Q 004114 444 RV----STYNGILKMYSECDSMDDAFSVFSNMTE-----R----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA--GL- 507 (773)
Q Consensus 444 d~----~tynaLI~ay~k~G~l~eA~~lf~~M~~-----~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~--Gv- 507 (773)
+. .+.+.+-..+...|+.+.|..++..... . -..++..|...|...|++++|+.++++.... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 22 1233333344456889999999887652 1 1346788899999999999999999988653 21
Q ss_pred -CCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhc---CCCCC--cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 508 -KPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDY---GIVPS--MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 508 -~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~---Gi~Pd--~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
+|. ..++..++..|...|++++|..++.+..... ..++. ...+..+...+...|++++|...|.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 222 3478888899999999999999988765321 11111 345667777788899999998777654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00069 Score=64.38 Aligned_cols=118 Identities=5% Similarity=0.040 Sum_probs=83.2
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHH-HHHcCCh--HH
Q 004114 421 GDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITG-FAKNGLG--ED 494 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~a-y~~~G~~--de 494 (773)
...|++++|...+...++.. +.+..++..+..+|...|++++|+..|++..+ .+...|..+..+ |...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34567778888888777764 34667788888888888888888888887663 366677777777 6678887 88
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 004114 495 AVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKD 540 (773)
Q Consensus 495 Al~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~ 540 (773)
|+..|++..+... -+...+..+..++...|++++|..+|..+.+.
T Consensus 100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888877531 23556677777788888888888888777553
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0004 Score=73.23 Aligned_cols=122 Identities=11% Similarity=0.002 Sum_probs=60.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhc--CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHH
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTE--RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD----QIFIGVFSAC 521 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~--~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~----~Ty~~LL~a~ 521 (773)
+-.+..++...|++++|.++|+.+.. |+-...-.+...+.+.+++++|+..|++.... |+. ..+..+-.++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHHHHHHHHHH
Confidence 34455556666666666666666642 32224444444566666666666666533221 211 2444455555
Q ss_pred HcCCChHHHHHHHHHHHHhcCCCCC--cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 522 SALGDVVEGMLHFESMSKDYGIVPS--MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 522 ~~~G~~deA~~if~~M~~~~Gi~Pd--~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
...|+.++|+..|++.... ...|. ......+-.++.+.|+.++|..+|+++
T Consensus 182 ~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5666666666666555321 11132 123333444455555555555555554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00045 Score=63.07 Aligned_cols=101 Identities=15% Similarity=0.048 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004114 513 IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCR 590 (773)
Q Consensus 513 Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~ 590 (773)
.+..+-..+.+.|++++|+..|.+..+. -+-+...|..+..+|.+.|++++|.+.|++. .+.| +...|..+-.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4555556666777777777777766553 2234566777777777777777777777765 3333 4677888888888
Q ss_pred HcCChhHHHHHHHHHHHcCCCCchH
Q 004114 591 MHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 591 ~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
..|++++|...++...+++|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 8888888888888888888888544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.002 Score=61.21 Aligned_cols=99 Identities=9% Similarity=0.011 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSA 520 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a 520 (773)
...+..+-..|.+.|++++|+..|++..+ | +...|..+-.+|...|++++|+..|++..+.. |+ ...|..+-.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHH
Confidence 44677788889999999999999998873 4 78899999999999999999999999998853 43 5678888899
Q ss_pred HHcCCChHHHHHHHHHHHHhcCCCCCcc
Q 004114 521 CSALGDVVEGMLHFESMSKDYGIVPSMK 548 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~~~~Gi~Pd~~ 548 (773)
+...|++++|...|+...+. .|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l---~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH---SNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCHH
Confidence 99999999999999988764 35543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00066 Score=71.61 Aligned_cols=185 Identities=12% Similarity=-0.017 Sum_probs=131.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCHHHHHHH-------HHHHHhCCChHHHHHHHHHhhc--C-------C----------
Q 004114 422 DAKALEEAKAVHEHVERLLSPLRVSTYNGI-------LKMYSECDSMDDAFSVFSNMTE--R-------D---------- 475 (773)
Q Consensus 422 ~~g~le~A~~l~~~m~k~G~~pd~~tynaL-------I~ay~k~G~l~eA~~lf~~M~~--~-------d---------- 475 (773)
..++...|.+.|.++.+.... ....|..+ ...+.+.++..+++..+..-.+ | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 467788888888888776422 34566655 3445555555555555544332 1 1
Q ss_pred -----HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC--cc
Q 004114 476 -----LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS--MK 548 (773)
Q Consensus 476 -----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd--~~ 548 (773)
...+-.+...+...|++++|.++|..+...+ |+....-.+-..+.+.+++++|+..|....+. . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 1234557788899999999999999887643 66555555556788999999999999755321 1 111 23
Q ss_pred hhhhHHHHHHhCCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 549 HYVSIVDMLGSTGYLDEALEFIEKM---PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 549 tyn~LI~~y~r~G~l~eA~~lf~~M---~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
.+..|-.++.+.|++++|++.|++. +..|. ...+..+-.++.+.|+.++|..+++.+...+|.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 6677888999999999999999987 22254 346667777889999999999999999999997
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0013 Score=58.12 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=52.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
+...+.+.|++++|+.+|++..+.. ..+..++..+..++...|++++|...++.+++.. +.+..++..+..+|.+.|+
T Consensus 22 ~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 22 KGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhh
Confidence 4555566666666666666665542 2245555566666666666666666666666543 2245555556666666666
Q ss_pred hHHHHHHHHHhh
Q 004114 461 MDDAFSVFSNMT 472 (773)
Q Consensus 461 l~eA~~lf~~M~ 472 (773)
+++|+..|++..
T Consensus 100 ~~~A~~~~~~~~ 111 (133)
T 2lni_A 100 YTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00074 Score=65.74 Aligned_cols=116 Identities=10% Similarity=-0.024 Sum_probs=50.2
Q ss_pred HHHHHHHhcCChhHHHHhhhhc---------cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC--------------H
Q 004114 355 QVLNNCKHEDDFAEASRSSQNN---------GTLEQLDGLVKEGKVKEAIEVLGLLEKQCIS-VD--------------L 410 (773)
Q Consensus 355 ~LI~~y~k~g~~~~A~~v~~~~---------~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~-Pd--------------~ 410 (773)
..+......|++++|.+++... .+..+-..+.+.|++++|+.+|.+..+..-. |+ .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 4444555556666666643211 1112555667778888888888777764211 10 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004114 411 PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNM 471 (773)
Q Consensus 411 ~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M 471 (773)
.+|..+..++...|++++|...+...++.. +.+..++..+..+|.+.|++++|+..|++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 344444444444455555555554444432 123344444444444444444444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0019 Score=58.83 Aligned_cols=90 Identities=7% Similarity=-0.060 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcC
Q 004114 414 SQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNG 490 (773)
Q Consensus 414 ~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G 490 (773)
..+-..+.+.|++++|.+.|++.++.. +.+..+|..+..+|.+.|++++|+..|++..+ .+...|..+..+|...|
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence 333444445555555555555554442 22344455555555555555555555554432 23444555555555555
Q ss_pred ChHHHHHHHHHHHH
Q 004114 491 LGEDAVDIFSQFKQ 504 (773)
Q Consensus 491 ~~deAl~Lf~eM~~ 504 (773)
++++|++.|++.++
T Consensus 96 ~~~~A~~~~~~al~ 109 (126)
T 4gco_A 96 EWSKAQRAYEDALQ 109 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.002 Score=69.10 Aligned_cols=124 Identities=8% Similarity=-0.050 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC--------------HHHHHHHHHHHHhCCChHHHHHHHHHhhc---C
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLR--------------VSTYNGILKMYSECDSMDDAFSVFSNMTE---R 474 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd--------------~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~ 474 (773)
.+..+-.++.+.|++++|...|...++...... ..+|..+..+|.+.|++++|+..|++..+ .
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 444555555566666666666666655432211 35666666666666666666666666552 2
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHH-HHHHHHH
Q 004114 475 DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEG-MLHFESM 537 (773)
Q Consensus 475 d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA-~~if~~M 537 (773)
+...|..+..+|...|++++|+..|++.++. .| +..++..+..++...|+.++| ..+|..|
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666777776666666653 23 344555555566666666665 3344444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0051 Score=63.93 Aligned_cols=189 Identities=11% Similarity=0.006 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHH
Q 004114 409 DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITG 485 (773)
Q Consensus 409 d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~a 485 (773)
+...+..+...+...|++++|...+...++.. +-+...|..+..+|.+.|++++|+..|++..+ | +...|..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44566677777888888888888888888763 23677888888888899999999999988764 2 66788888889
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHH
Q 004114 486 FAKNGLGEDAVDIFSQFKQAGLKPDD-QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLD 564 (773)
Q Consensus 486 y~~~G~~deAl~Lf~eM~~~Gv~Pd~-~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~ 564 (773)
|...|++++|+..|.+..+.. |+. .++..++.... ...++.. +..+... -...+......+-. + ..|+.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~-~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSAL---RIAKKKR-WNSIEER-RIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHH---HHHHHHH-HHHHHHT-CCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHH---HHHHHHH-HHHHHHH-HHhhhHHHHHHHHH-H-HHHHHH
Confidence 999999999999998876632 211 00111111111 1111111 1222222 34444444443433 2 268888
Q ss_pred HHHHHHHhC-CCCCCHHH-HHHHHHHHHHc-CChhHHHHHHHHHHH
Q 004114 565 EALEFIEKM-PMEPDVDV-WEKLMNLCRMH-GNLELGDRCAEIVEQ 607 (773)
Q Consensus 565 eA~~lf~~M-~~~Pd~~t-y~~LI~a~~~~-G~~e~A~~~~e~m~e 607 (773)
+|.+.++.. ...|+... ...+-..+... +.+++|.++++.+.+
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 898888766 55676443 33333333333 445566666655543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0021 Score=68.85 Aligned_cols=123 Identities=11% Similarity=-0.007 Sum_probs=100.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVD--------------LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVS 446 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd--------------~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~ 446 (773)
+-..|.+.|++++|+..|.+..+..-... ..+|..+..++.+.|++++|+..++..++.. +.+..
T Consensus 153 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 231 (336)
T 1p5q_A 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEK 231 (336)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Confidence 55566777888888888888776532211 5788899999999999999999999999975 34788
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHH-HHHHHHHHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDA-VDIFSQFKQ 504 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deA-l~Lf~eM~~ 504 (773)
++..+..+|.+.|++++|+..|++..+ | +...|..+..++.+.|+.++| ..+|..|..
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998873 3 678899999999999999988 557777653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0016 Score=57.18 Aligned_cols=93 Identities=12% Similarity=0.140 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---C-------HhHHHH
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER---D-------LTSWDT 481 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~---d-------~~tyn~ 481 (773)
.+..+...+...|++++|...+...++.. +.+..++..+..+|.+.|++++|+..|+++.+. + ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34445555556666666666666665543 234555666666666666666666666655421 1 455666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 004114 482 MITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 482 LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
+..+|...|++++|++.|++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 666677777777777777766663
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00098 Score=60.52 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhc-----CC----HhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTE-----RD----LTSWDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~-----~d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
+..+...|...|++++|+..|++..+ .+ ..++..+...|...|++++|+..|++..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444445555555555444331 11 1244445555555555555555555443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0053 Score=72.53 Aligned_cols=188 Identities=9% Similarity=-0.017 Sum_probs=124.0
Q ss_pred HHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---------CCC-------
Q 004114 382 LDGLVKEGKVKEAI-EVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS---------PLR------- 444 (773)
Q Consensus 382 I~a~~~~G~~~eAl-~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~---------~pd------- 444 (773)
+.-+.+.|+.++|. ++|++.... ++.+...|-..+...-+.|+++.|+++|+.+++... .|+
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~ 428 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ 428 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence 33444567777776 778777653 334555566667777778888888888888776410 131
Q ss_pred -----HHHHHHHHHHHHhCCChHHHHHHHHHhhcC-C---HhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCCHHHH
Q 004114 445 -----VSTYNGILKMYSECDSMDDAFSVFSNMTER-D---LTSWDTMITGFAKN-GLGEDAVDIFSQFKQAGLKPDDQIF 514 (773)
Q Consensus 445 -----~~tynaLI~ay~k~G~l~eA~~lf~~M~~~-d---~~tyn~LI~ay~~~-G~~deAl~Lf~eM~~~Gv~Pd~~Ty 514 (773)
..+|...++...+.|.++.|+++|.+..+. . ...|-..+..-.+. ++.+.|..+|+..++. +.-+...+
T Consensus 429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w 507 (679)
T 4e6h_A 429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHH
T ss_pred hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHH
Confidence 346788888888888888888888877543 2 22232222122223 4578888888888775 32244445
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhcCCCC---CcchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 515 IGVFSACSALGDVVEGMLHFESMSKDYGIVP---SMKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 515 ~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P---d~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
...+.-....|+.+.|+.+|+..... .++ ....|...++.-.+.|..+.+.++.++|
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~--~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDK--ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTT--SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56666666778888888888877553 221 2457777888888888888888888888
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0012 Score=61.95 Aligned_cols=89 Identities=11% Similarity=0.039 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 004114 448 YNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL 524 (773)
Q Consensus 448 ynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~ 524 (773)
+..+...+.+.|++++|+..|++..+ | +...|..+-.+|...|++++|+..|++.....- -+..++..+-.++...
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 33344444444444444444444331 1 334444444444444444444444444443210 1223333344444444
Q ss_pred CChHHHHHHHHHH
Q 004114 525 GDVVEGMLHFESM 537 (773)
Q Consensus 525 G~~deA~~if~~M 537 (773)
|++++|...|+..
T Consensus 103 g~~~~A~~~~~~a 115 (148)
T 2vgx_A 103 GELAEAESGLFLA 115 (148)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0009 Score=57.63 Aligned_cols=94 Identities=14% Similarity=0.003 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHH
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDM 556 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~ 556 (773)
..|..+...+...|++++|+.+|++..... ..+...+..+..++...|++++|..+++...+. .+.+...+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 445556666666666666666666665532 113445555555555666666666666555443 11233444445555
Q ss_pred HHhCCCHHHHHHHHHhC
Q 004114 557 LGSTGYLDEALEFIEKM 573 (773)
Q Consensus 557 y~r~G~l~eA~~lf~~M 573 (773)
|...|++++|.+.+++.
T Consensus 82 ~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 55555555555555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0032 Score=56.11 Aligned_cols=91 Identities=9% Similarity=-0.030 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHc
Q 004114 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKN 489 (773)
Q Consensus 413 y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~ 489 (773)
+..+-..+.+.|++++|...|...++.. +.+..+|..+..+|.+.|++++|+..|++..+ | +...|..+..+|...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3444444555566666666665555543 22455555566666666666666666655542 2 445555566666666
Q ss_pred CChHHHHHHHHHHHH
Q 004114 490 GLGEDAVDIFSQFKQ 504 (773)
Q Consensus 490 G~~deAl~Lf~eM~~ 504 (773)
|++++|+..|++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 666666666665554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0041 Score=67.49 Aligned_cols=190 Identities=7% Similarity=-0.087 Sum_probs=137.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCC----------------HHHHHHHHHHHHhCCChHHHHHHHHHhhcC-----CH
Q 004114 418 QACGDAKALEEAKAVHEHVERLLSPLR----------------VSTYNGILKMYSECDSMDDAFSVFSNMTER-----DL 476 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~G~~pd----------------~~tynaLI~ay~k~G~l~eA~~lf~~M~~~-----d~ 476 (773)
..+.+.|++++|.+.+..+++...... ...+..|...|.+.|++++|.+++..+.+. +.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 446788999999999999988632211 124678899999999999999999887631 11
Q ss_pred ----hHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-
Q 004114 477 ----TSWDTMITGFAKNGLGEDAVDIFSQFKQ----AGLKPD-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS- 546 (773)
Q Consensus 477 ----~tyn~LI~ay~~~G~~deAl~Lf~eM~~----~Gv~Pd-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd- 546 (773)
.+.+.+-..+...|..++|+.++.+... .+..+. ..++..|...+...|++++|..++........-..+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2233333444557889999999988754 344444 456788889999999999999999887654222222
Q ss_pred ---cchhhhHHHHHHhCCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004114 547 ---MKHYVSIVDMLGSTGYLDEALEFIEKM-------PMEPD--VDVWEKLMNLCRMHGNLELGDRCAEIVEQ 607 (773)
Q Consensus 547 ---~~tyn~LI~~y~r~G~l~eA~~lf~~M-------~~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m~e 607 (773)
+.+|..++.+|...|++++|..++++. +..+. ..++..+...+...++++.|...+....+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 467888999999999999999998765 21111 34566666777888999999776665543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0008 Score=59.15 Aligned_cols=58 Identities=9% Similarity=0.081 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
.+..+...|...|++++|+..|++..+ .+...|..+...|...|++++|+..|++...
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 344444455555555555555554432 1344444445555555555555555554443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0006 Score=61.97 Aligned_cols=132 Identities=14% Similarity=-0.009 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC----c
Q 004114 477 TSWDTMITGFAKNGLGEDAVDIFSQFKQAGL-KPD----DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS----M 547 (773)
Q Consensus 477 ~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv-~Pd----~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd----~ 547 (773)
.++..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..+++...+...-..+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4677888899999999999999998875321 122 136778888899999999999999886543211112 4
Q ss_pred chhhhHHHHHHhCCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 548 KHYVSIVDMLGSTGYLDEALEFIEKM-------PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 548 ~tyn~LI~~y~r~G~l~eA~~lf~~M-------~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
..+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...++...++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56777888999999999999998765 1111 1456777888899999999999998887765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00071 Score=57.84 Aligned_cols=93 Identities=14% Similarity=0.054 Sum_probs=44.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHc
Q 004114 517 VFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP---DVDVWEKLMNLCRMH 592 (773)
Q Consensus 517 LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P---d~~ty~~LI~a~~~~ 592 (773)
+...+...|++++|..+|++..+. .+.+...+..+..+|.+.|++++|.+.|++. ...| +..+|..+..++...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 333344444444444444444332 1122334444444455555555555555443 1122 345555555555556
Q ss_pred -CChhHHHHHHHHHHHcCCC
Q 004114 593 -GNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 593 -G~~e~A~~~~e~m~el~p~ 611 (773)
|++++|...++.+.+..|.
T Consensus 90 ~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 90 EGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp SSCSHHHHHHHHHHGGGCCC
T ss_pred hCCHHHHHHHHHHHhhcccC
Confidence 6666666666555555554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00084 Score=63.24 Aligned_cols=102 Identities=10% Similarity=-0.015 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 004114 513 IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCR 590 (773)
Q Consensus 513 Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~ 590 (773)
.+..+-..+...|++++|+.+|.+..+. .+-+...|..+..+|.+.|++++|.+.|++. .+.| +...|..+-.++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444444444555555555555544332 1113444555555555555555555555544 2223 3556666666666
Q ss_pred HcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 591 MHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 591 ~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
..|++++|...++...+++|++...+
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHH
Confidence 66777777777766666666665433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0045 Score=55.49 Aligned_cols=94 Identities=11% Similarity=-0.013 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHH
Q 004114 409 DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITG 485 (773)
Q Consensus 409 d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~a 485 (773)
+...+..+...+...|++++|...+...++.. +.+..++..+..+|.+.|++++|+..|++..+ | +...|..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34444455555555555555555555555442 12344455555555555555555555554432 1 34445555555
Q ss_pred HHHcCChHHHHHHHHHHH
Q 004114 486 FAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 486 y~~~G~~deAl~Lf~eM~ 503 (773)
|...|++++|+..|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555555444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0048 Score=52.92 Aligned_cols=94 Identities=15% Similarity=0.073 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSAC 521 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~ 521 (773)
...+..+...+...|++++|+..|++..+ | +...|..+...|...|++++|+..+++..+.. ..+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34566677777777777887777777652 2 56677777777777777778777777776642 12455666777777
Q ss_pred HcCCChHHHHHHHHHHHH
Q 004114 522 SALGDVVEGMLHFESMSK 539 (773)
Q Consensus 522 ~~~G~~deA~~if~~M~~ 539 (773)
...|++++|..++....+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777777776643
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00048 Score=67.13 Aligned_cols=143 Identities=12% Similarity=0.027 Sum_probs=72.9
Q ss_pred HHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC--------------HHH
Q 004114 452 LKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL-KPD--------------DQI 513 (773)
Q Consensus 452 I~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv-~Pd--------------~~T 513 (773)
+.+....|++++|.++|+...+ .....|..+...+...|++++|+.+|++.....- .|+ ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 3344445555556555543322 1344566666777777777777777777766321 111 145
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 004114 514 FIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRM 591 (773)
Q Consensus 514 y~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~ 591 (773)
+..+..+|...|++++|+..+....+. -+.+...+..+..+|...|++++|.+.|++. .+.| +..++..+..++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 555566666666666666666665543 1223455555666666666666666666554 2223 34445444444444
Q ss_pred cCChh
Q 004114 592 HGNLE 596 (773)
Q Consensus 592 ~G~~e 596 (773)
.++.+
T Consensus 169 ~~~~~ 173 (198)
T 2fbn_A 169 LKEAR 173 (198)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0011 Score=62.15 Aligned_cols=93 Identities=12% Similarity=-0.044 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHH
Q 004114 411 PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFA 487 (773)
Q Consensus 411 ~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~ 487 (773)
..+..+...+...|++++|...|...++.. +.+...|..+-.+|.+.|++++|+..|++..+ | +...|..+..+|.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 345555566667777777777777776653 23566666677777777777777777776652 3 5566666777777
Q ss_pred HcCChHHHHHHHHHHHH
Q 004114 488 KNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 488 ~~G~~deAl~Lf~eM~~ 504 (773)
..|++++|+..|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776655
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00094 Score=61.56 Aligned_cols=92 Identities=15% Similarity=0.068 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDML 557 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y 557 (773)
.+..+...+.+.|++++|+.+|++...... -+...|..+-.++...|++++|...|+...+. -+-+...+..+..+|
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 344444555555555555555555544321 13334444444555555555555555554432 111233344444444
Q ss_pred HhCCCHHHHHHHHHh
Q 004114 558 GSTGYLDEALEFIEK 572 (773)
Q Consensus 558 ~r~G~l~eA~~lf~~ 572 (773)
...|++++|.+.|+.
T Consensus 97 ~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 97 LQLGDLDGAESGFYS 111 (142)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 444444444444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.002 Score=72.84 Aligned_cols=115 Identities=12% Similarity=0.020 Sum_probs=59.0
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHH
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAV 496 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl 496 (773)
+.+.|++++|.+.+++.++.. +-+..++..+..+|.+.|++++|++.|++..+ .+..+|..+..+|...|++++|+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 445566666666666666652 22455666666666666666666666665543 24455666666666666666666
Q ss_pred HHHHHHHHCCC-CCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 004114 497 DIFSQFKQAGL-KPDDQIFIGVFSACSALGDVVEGMLHFE 535 (773)
Q Consensus 497 ~Lf~eM~~~Gv-~Pd~~Ty~~LL~a~~~~G~~deA~~if~ 535 (773)
+.|++..+..- .++.......+..+.+.|++++|+++++
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666555321 1112222222222445555555555544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0031 Score=59.29 Aligned_cols=92 Identities=11% Similarity=0.000 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHH
Q 004114 412 TFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAK 488 (773)
Q Consensus 412 ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~ 488 (773)
.+..+...+...|++++|...|...++.. +-+...|..+..+|.+.|++++|+..|++..+ | +...|..+..+|..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444444445555555555555554432 11344444444455555555555555544432 1 34444444444444
Q ss_pred cCChHHHHHHHHHHHH
Q 004114 489 NGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 489 ~G~~deAl~Lf~eM~~ 504 (773)
.|++++|+..|++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4555555444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0021 Score=54.78 Aligned_cols=90 Identities=11% Similarity=0.087 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHcC
Q 004114 449 NGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLK-PDDQIFIGVFSACSAL 524 (773)
Q Consensus 449 naLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~-Pd~~Ty~~LL~a~~~~ 524 (773)
..+...|.+.|++++|+..|++..+ .+...|..+...|...|++++|+..|++..+.... .+...+..+..++...
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 3344444444444444444444331 13344444555555555555555555555443110 0234444445555555
Q ss_pred -CChHHHHHHHHHHH
Q 004114 525 -GDVVEGMLHFESMS 538 (773)
Q Consensus 525 -G~~deA~~if~~M~ 538 (773)
|++++|.+++..+.
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 90 EGKEVEAEIAEARAK 104 (112)
T ss_dssp SSCSHHHHHHHHHHG
T ss_pred hCCHHHHHHHHHHHh
Confidence 55555555555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0013 Score=68.43 Aligned_cols=162 Identities=6% Similarity=-0.100 Sum_probs=112.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 004114 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFS 519 (773)
Q Consensus 444 d~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~ 519 (773)
+...+..+...|.+.|++++|+..|++..+ | +...|..+..+|.+.|++++|+..+++..+. .| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 456778888999999999999999998763 4 7889999999999999999999999998874 44 4567888889
Q ss_pred HHHcCCChHHHHHHHHHHHHhcCCCCC-cchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 004114 520 ACSALGDVVEGMLHFESMSKDYGIVPS-MKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELG 598 (773)
Q Consensus 520 a~~~~G~~deA~~if~~M~~~~Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A 598 (773)
++...|++++|...|....+. .|+ ..++..++....+......... ........+..+...+ ..+. .|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 999999999999999887553 121 2233333333332222222222 2223333344444333 3333 5778888
Q ss_pred HHHHHHHHHcCCCCc
Q 004114 599 DRCAEIVEQLDPSRL 613 (773)
Q Consensus 599 ~~~~e~m~el~p~~~ 613 (773)
.+.++...+++|.+.
T Consensus 155 ~~~~~~al~~~p~~~ 169 (281)
T 2c2l_A 155 LEECQRNHEGHEDDG 169 (281)
T ss_dssp HTTTSGGGTTTSCHH
T ss_pred HHHHHhhhccccchh
Confidence 877777777777653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.008 Score=54.16 Aligned_cols=93 Identities=13% Similarity=-0.028 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHH
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLR----VSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTM 482 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd----~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~L 482 (773)
...+..+...+...|++++|..+++..++. .|+ ..++..+..+|.+.|++++|+..|++..+ | +...|..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 344444555555555555555555555443 233 34445555555555555555555554432 1 34445555
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~ 504 (773)
..+|...|++++|+..|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.22 E-value=0.02 Score=64.92 Aligned_cols=201 Identities=11% Similarity=0.013 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHH-HHHHH
Q 004114 392 KEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAF-SVFSN 470 (773)
Q Consensus 392 ~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~-~lf~~ 470 (773)
+.+..+|++++.. ++-+...|...+.-+.+.|+++.|+.+++..++. +.+...+. +|+...+.++.. .+.+.
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHH
Confidence 4567788888875 3445777888888888899999999999999998 44443333 233322222221 11111
Q ss_pred hh------------cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHcCCChHHHHHHHHH
Q 004114 471 MT------------ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFI--GVFSACSALGDVVEGMLHFES 536 (773)
Q Consensus 471 M~------------~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~--~LL~a~~~~G~~deA~~if~~ 536 (773)
.. ......|-..+..+.+.+..+.|..+|++. ... ..+...|. +.+.... .++.+.|..+|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~ 345 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSS 345 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHH
Confidence 10 012356777788877888899999999998 321 12344443 3333322 3369999999999
Q ss_pred HHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004114 537 MSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVE 606 (773)
Q Consensus 537 M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~ 606 (773)
..+.++- +...+...++...+.|+.+.|..+|+.+. .....|...+..=..+|+.+.+..+++...
T Consensus 346 al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 346 GLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8887432 23456667888889999999999999983 368889999988888999998888777665
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0061 Score=54.61 Aligned_cols=94 Identities=5% Similarity=-0.084 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSA 520 (773)
Q Consensus 444 d~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a 520 (773)
+...+..+...|.+.|++++|+..|++..+ | +...|..+..+|...|++++|+..|++..+... -+...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHH
Confidence 455566666666666666666666665542 2 455666666666666666666666666655321 134455556666
Q ss_pred HHcCCChHHHHHHHHHHH
Q 004114 521 CSALGDVVEGMLHFESMS 538 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~ 538 (773)
+...|++++|...|....
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 666666666666665544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0064 Score=55.18 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-C-------HhHHHHH
Q 004114 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-D-------LTSWDTM 482 (773)
Q Consensus 413 y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d-------~~tyn~L 482 (773)
+..|-.++.+.|++++|+..|.+.++.. +-+..+|..+-.+|.+.|++++|+..|++..+ | + ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344445555555555555555555542 22345555555566666666666665555432 1 0 1244555
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~ 504 (773)
-.+|...|++++|++.|++.+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666666666666666554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0045 Score=56.86 Aligned_cols=86 Identities=10% Similarity=-0.056 Sum_probs=39.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChH
Q 004114 417 MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGE 493 (773)
Q Consensus 417 L~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~d 493 (773)
...+...|++++|..+|..+++.. +.+...|..+..+|.+.|++++|+..|++..+ | +...|..+..+|...|+++
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 333444455555555555444432 12344444444444455555555555544431 1 3334444444444555555
Q ss_pred HHHHHHHHHH
Q 004114 494 DAVDIFSQFK 503 (773)
Q Consensus 494 eAl~Lf~eM~ 503 (773)
+|+..|++..
T Consensus 104 ~A~~~~~~al 113 (142)
T 2xcb_A 104 GAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0084 Score=54.01 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhc--CC----HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004114 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTE--RD----LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGV 517 (773)
Q Consensus 444 d~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~d----~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~L 517 (773)
+...+..+...+.+.|++++|+..|++..+ |+ ...|..+..+|...|++++|+..|++..+.. ..+...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 455566666666667777777777766553 33 4556666666666666666666666665532 1134455555
Q ss_pred HHHHHcCCChHHHHHHHHHHHH
Q 004114 518 FSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 518 L~a~~~~G~~deA~~if~~M~~ 539 (773)
..++...|++++|..+|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666666666665544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0059 Score=54.36 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACS 522 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~ 522 (773)
.+..+-..+.+.|++++|+..|++..+ | +...|..+..+|.+.|++++|+..|++..+.. | +..+|..+-.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 344444455555555555555554432 1 34455555555555555555555555554432 2 2334444444455
Q ss_pred cCCChHHHHHHHHHH
Q 004114 523 ALGDVVEGMLHFESM 537 (773)
Q Consensus 523 ~~G~~deA~~if~~M 537 (773)
..|++++|...|++.
T Consensus 84 ~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 84 AVKEYASALETLDAA 98 (126)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHH
Confidence 555555555554444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.023 Score=60.53 Aligned_cols=196 Identities=5% Similarity=0.003 Sum_probs=142.1
Q ss_pred HcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 004114 387 KEG--KVKEAIEVLGLLEKQCISVDLPTFSQLMQAC----GDA---KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE 457 (773)
Q Consensus 387 ~~G--~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~----~~~---g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k 457 (773)
..+ ++++++++++.+.....+ +..+|+.--..+ ... +++++++.+++.+++.. +-+..+|+--.-++.+
T Consensus 79 ~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~ 156 (306)
T 3dra_A 79 NLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDT 156 (306)
T ss_dssp TCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 445 899999999999886432 334454433333 344 78999999999999875 3478888888888888
Q ss_pred CCChH--HHHHHHHHhhc---CCHhHHHHHHHHHHHcCC------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 004114 458 CDSMD--DAFSVFSNMTE---RDLTSWDTMITGFAKNGL------GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD 526 (773)
Q Consensus 458 ~G~l~--eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~------~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~ 526 (773)
.|..+ ++++.+++|.+ +|-..|+--...+...+. ++++++.++++...... |...|+-+-..+.+.|+
T Consensus 157 l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 157 FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDR 235 (306)
T ss_dssp TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTC
T ss_pred hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCC
Confidence 88888 99999999985 477788877777777776 89999999999886543 66778777777778877
Q ss_pred hHH-HHHHHHHHHHhcC--CCCCcchhhhHHHHHHhCCCHHHHHHHHHhC--CCCCC-HHHHHHHH
Q 004114 527 VVE-GMLHFESMSKDYG--IVPSMKHYVSIVDMLGSTGYLDEALEFIEKM--PMEPD-VDVWEKLM 586 (773)
Q Consensus 527 ~de-A~~if~~M~~~~G--i~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M--~~~Pd-~~ty~~LI 586 (773)
..+ +..+..++... + -..+......|.++|.+.|+.++|.++++.+ .+.|- ..-|...+
T Consensus 236 ~~~~~~~~~~~~~~~-~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 236 SITQLEEFSLQFVDL-EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp CGGGGHHHHHTTEEG-GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ChHHHHHHHHHHHhc-cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 444 44555554321 1 1235677888999999999999999999988 24453 44555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0078 Score=54.56 Aligned_cols=94 Identities=10% Similarity=0.101 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 004114 446 STYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG--LKPD----DQIFIG 516 (773)
Q Consensus 446 ~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G--v~Pd----~~Ty~~ 516 (773)
..+..|-..|.+.|++++|+..|++..+ | +...|+.+-.+|...|++++|++.|++.++.. ..++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3455667777788888888888877653 3 56777777888888888888888887766531 1112 124555
Q ss_pred HHHHHHcCCChHHHHHHHHHHHH
Q 004114 517 VFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 517 LL~a~~~~G~~deA~~if~~M~~ 539 (773)
+-.++...|++++|+..|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666677777777777766544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0034 Score=71.33 Aligned_cols=91 Identities=11% Similarity=0.010 Sum_probs=49.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC---CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CC-CCC-HH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQC---IS---VD-LPTFSQLMQACGDAKALEEAKAVHEHVERL-----LS-PLR-VS 446 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~G---v~---Pd-~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-----G~-~pd-~~ 446 (773)
.+..+...|++++|+.++++.++.. +- |+ ..+++.|..+|...|++++|..++++.++. |. -|+ ..
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3444556677777777776665321 11 21 235666666666666666666666655432 21 111 33
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHh
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNM 471 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M 471 (773)
+++.|...|...|++++|+.++++.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555666666666666666655543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0028 Score=57.20 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=45.2
Q ss_pred HHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChh
Q 004114 519 SACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLE 596 (773)
Q Consensus 519 ~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e 596 (773)
..+...|++++|+..|+...+. -+-+...|..|-.++.+.|++++|...|++. .+.| +...|..|..++...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3444555555555555554432 1123444445555555555555555555544 2223 3445555555666666666
Q ss_pred HHHHHHHHHHHcCCCC
Q 004114 597 LGDRCAEIVEQLDPSR 612 (773)
Q Consensus 597 ~A~~~~e~m~el~p~~ 612 (773)
+|...++.+.+++|..
T Consensus 103 ~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 103 AALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhCcCC
Confidence 6666666666555543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0084 Score=53.93 Aligned_cols=90 Identities=9% Similarity=0.004 Sum_probs=47.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
+...+.+.|++++|+..|++..+.. +-+...|..+-.++...|++++|...++..++... -+...+..|..+|.+.|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 3445555666666666666655542 11444555555555555666666666655555431 134455555555555555
Q ss_pred hHHHHHHHHHhh
Q 004114 461 MDDAFSVFSNMT 472 (773)
Q Consensus 461 l~eA~~lf~~M~ 472 (773)
.++|+..|++..
T Consensus 101 ~~~A~~~~~~al 112 (121)
T 1hxi_A 101 ANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0044 Score=69.98 Aligned_cols=116 Identities=10% Similarity=-0.030 Sum_probs=92.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChH
Q 004114 383 DGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMD 462 (773)
Q Consensus 383 ~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~ 462 (773)
..+.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|.+.+++.++.. +-+..++..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34567899999999999998762 2357889999999999999999999999999874 346788999999999999999
Q ss_pred HHHHHHHHhhc--C-CHhHHHHHHHH--HHHcCChHHHHHHHH
Q 004114 463 DAFSVFSNMTE--R-DLTSWDTMITG--FAKNGLGEDAVDIFS 500 (773)
Q Consensus 463 eA~~lf~~M~~--~-d~~tyn~LI~a--y~~~G~~deAl~Lf~ 500 (773)
+|++.|++..+ | +...+..+..+ +.+.|++++|+++++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999998763 3 44566666555 888899999999988
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0084 Score=53.05 Aligned_cols=64 Identities=13% Similarity=-0.038 Sum_probs=32.8
Q ss_pred hhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 549 HYVSIVDMLGSTGYLDEALEFIEKM-PMEPD----VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 549 tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd----~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
.+..+..+|.+.|++++|.+.|+.. ...|+ ...+..+..++...|+++.|...++.+.+..|++
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 3334444455555555555555443 11121 3344455555566666666666666666666554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.058 Score=63.55 Aligned_cols=93 Identities=11% Similarity=0.032 Sum_probs=46.7
Q ss_pred hcCChhHHHH-hh---h-hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004114 362 HEDDFAEASR-SS---Q-NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHV 436 (773)
Q Consensus 362 k~g~~~~A~~-v~---~-~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m 436 (773)
..+++++|.+ ++ . ......++..+.+.|..++|+++.++... -+......|++++|.++.+.+
T Consensus 611 ~~~~~~~a~~~~l~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~------------~f~~~l~~~~~~~A~~~~~~~ 678 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQDQ------------KFELALKVGQLTLARDLLTDE 678 (814)
T ss_dssp HTTCHHHHHHHTGGGCCCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH------------HHHHHHHHTCHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCChHHheecCCCcch------------heehhhhcCCHHHHHHHHHhh
Confidence 4566666666 43 1 22223455556666666666655421110 012233455666665553321
Q ss_pred HHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 437 ERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 437 ~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
.+...|..|.+++.+.|+++.|++.|..+.
T Consensus 679 ------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 679 ------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp ------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 244556666666666666666666655543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0037 Score=67.10 Aligned_cols=149 Identities=11% Similarity=0.031 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhc--CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTE--RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACS 522 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~ 522 (773)
...+..+-..|.+.|++++|+..|++..+ |+... +...|+.+++...+. ...|..+-.++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34566777778888888888888887653 22221 222333334333221 136777778888
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHHcCChhHHH
Q 004114 523 ALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNL-CRMHGNLELGD 599 (773)
Q Consensus 523 ~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a-~~~~G~~e~A~ 599 (773)
+.|++++|+..+....+. -+-+...|..+..+|...|++++|.+.|++. .+.|+ ..++..|... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999998888887654 1235677888888899999999999998887 45554 3344444433 23345556667
Q ss_pred HHHHHHHHcCCCC
Q 004114 600 RCAEIVEQLDPSR 612 (773)
Q Consensus 600 ~~~e~m~el~p~~ 612 (773)
..+..+..+.|.+
T Consensus 320 ~~~~~~l~~~p~~ 332 (338)
T 2if4_A 320 EMYKGIFKGKDEG 332 (338)
T ss_dssp -------------
T ss_pred HHHHHhhCCCCCC
Confidence 7777777776655
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.03 Score=49.36 Aligned_cols=59 Identities=8% Similarity=-0.041 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 479 WDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD----DQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 479 yn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd----~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
|..+..+|...|++++|+..|++..... |+ ..++..+..++...|++++|..+|+.+.+
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444321 21 22333334444444444444444444433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.013 Score=65.53 Aligned_cols=113 Identities=12% Similarity=0.002 Sum_probs=54.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCIS-VD-------------LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVS 446 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~-Pd-------------~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~ 446 (773)
+-..|.+.|++++|+..|.+.++..-. ++ ..+|..+..++.+.|++++|+..+...++.. +.+..
T Consensus 274 ~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 352 (457)
T 1kt0_A 274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEK 352 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHH
Confidence 556677788888888888877664211 11 2344444444444455555555554444432 11334
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTER---DLTSWDTMITGFAKNGLGED 494 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~de 494 (773)
.|..+-.+|.+.|++++|+..|++..+. +...|..+..++.+.++.++
T Consensus 353 a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 353 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444321 23334444444444444433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.017 Score=64.59 Aligned_cols=137 Identities=9% Similarity=-0.057 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHc
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKN 489 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~ 489 (773)
...|..+-..+.+.|++++|...|...++....... + .-+... ++......+|..+..+|.+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~----~~~~~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESK----ASESFLLAAFLNLAMCYLKL 330 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHH----HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 445666666777777777777777777664211100 0 000000 01111235566666677777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHH
Q 004114 490 GLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEAL 567 (773)
Q Consensus 490 G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~ 567 (773)
|++++|+..|++.++..- -+...|..+-.+|...|++++|+..|.+..+ +.| +...+..|..++.+.++.++|.
T Consensus 331 g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 331 REYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666421 2345666666667777777777776666543 333 3455556666666666666554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.002 Score=57.24 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
.|..|..+|...|++++|+..|++..+.... +..++..+..++...|++++|+.+|.+.
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444444443211 1333344444444444444444444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0031 Score=55.97 Aligned_cols=84 Identities=7% Similarity=-0.043 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHH
Q 004114 388 EGKVKEAIEVLGLLEKQCI--SVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAF 465 (773)
Q Consensus 388 ~G~~~eAl~lf~~M~~~Gv--~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~ 465 (773)
.|++++|+..|++.++.+. +-+...+..+..++...|++++|...+++.++... -+..++..+..+|.+.|+.++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 3556666666666655421 11233455555555566666666666666655532 23455555555566666666666
Q ss_pred HHHHHhh
Q 004114 466 SVFSNMT 472 (773)
Q Consensus 466 ~lf~~M~ 472 (773)
..|++..
T Consensus 82 ~~~~~al 88 (117)
T 3k9i_A 82 ELLLKII 88 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.015 Score=63.23 Aligned_cols=136 Identities=10% Similarity=0.017 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHc
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKN 489 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~ 489 (773)
...+..+-..+.+.|++++|...|+..++.- +.. ...-..+++. .+...+..+|..+..+|.+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~----~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA----KLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG----GGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence 3456666666777777777777777666520 000 0000000000 01111334555555556666
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHH
Q 004114 490 GLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEA 566 (773)
Q Consensus 490 G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA 566 (773)
|++++|++.+++.++. .| +...+..+-.++...|++++|+..|++..+. .| +...+..|..++.+.++.++|
T Consensus 287 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555543 23 2344555555555556666665555554432 22 233344444444444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.086 Score=56.68 Aligned_cols=188 Identities=11% Similarity=0.108 Sum_probs=132.3
Q ss_pred HhcCCH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHhhc---CCHhHHHHHHHHH
Q 004114 421 GDAKAL-EEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS----------MDDAFSVFSNMTE---RDLTSWDTMITGF 486 (773)
Q Consensus 421 ~~~g~l-e~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~----------l~eA~~lf~~M~~---~d~~tyn~LI~ay 486 (773)
.+.|.+ ++|+.+.+.++..... +..+|+.--..+...+. +++++.+++.+.. ++..+|+.-.-.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344544 5789999988876432 44556553333333222 6788899988874 4778888888888
Q ss_pred HHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhC---
Q 004114 487 AKNGL--GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD-VVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGST--- 560 (773)
Q Consensus 487 ~~~G~--~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~-~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~--- 560 (773)
...++ ++++++++++|.+...+ +..+|+.---.+...|. +++++..++.+.+. -+-+...|+....++.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhc
Confidence 88884 89999999999986543 66677776667777887 58999999998875 233556666555555544
Q ss_pred -----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHHcCCCC
Q 004114 561 -----------GYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMH-----------GNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 561 -----------G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~-----------G~~e~A~~~~e~m~el~p~~ 612 (773)
+.++++++++... ...| |...|+.+-..+.+. +.++++...++.+.+++|++
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 4588899888876 3334 678887665555544 35678888899999999987
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.022 Score=53.11 Aligned_cols=61 Identities=8% Similarity=0.049 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 445 VSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 445 ~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
..+|..+..+|.+.|++++|+..+++..+ | +...|..+..+|...|++++|+..|++....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34566666666777777777777666552 2 4566666777777777777777777766653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0034 Score=71.40 Aligned_cols=132 Identities=8% Similarity=-0.094 Sum_probs=80.7
Q ss_pred cHHHHHHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004114 323 QWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLE 402 (773)
Q Consensus 323 ~w~~a~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~ 402 (773)
+|.++...++++.++...+..........+++.|..+|...|++++|..+ +++|++++++..
T Consensus 324 ~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~------------------~~~aL~i~~~~l 385 (490)
T 3n71_A 324 LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHY------------------ARRMVDGYMKLY 385 (490)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH------------------HHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHH------------------HHHHHHHHHHHc
Confidence 45666666666555444332222222334667777777777777777763 345666665554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCC-CC-HHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 403 KQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL-----LSP-LR-VSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 403 ~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-----G~~-pd-~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
-....-...+++.|...|...|++++|+.++++.++. |.. |+ ..+.+.|-.++.+.+..++|+.+|.++.
T Consensus 386 G~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 386 HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322223458899999999999999999999877653 322 11 2334445555666666667776666654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.025 Score=61.57 Aligned_cols=134 Identities=10% Similarity=0.040 Sum_probs=85.3
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 004114 376 NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMY 455 (773)
Q Consensus 376 ~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay 455 (773)
..+..+-..+.+.|++++|++.|.+.++.- +. +......+.+..+. +.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~----------~~~~~~~~~~~~~~--------~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EG----------SRAAAEDADGAKLQ--------PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------HHHHSCHHHHGGGH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hc----------CccccChHHHHHHH--------HHHHHHHHHHHHHH
Confidence 334457888999999999999999887630 00 00011111111110 11345677777788
Q ss_pred HhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCChHHHH
Q 004114 456 SECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-DDQIFIGVFSACSALGDVVEGM 531 (773)
Q Consensus 456 ~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-d~~Ty~~LL~a~~~~G~~deA~ 531 (773)
.+.|++++|+..+++..+ | +...|..+..+|...|++++|+..|++..+. .| +...+..+..++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877764 2 5667777888888888888888888887764 34 3445555555555555555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.13 Score=60.43 Aligned_cols=156 Identities=13% Similarity=0.162 Sum_probs=107.5
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCh
Q 004114 383 DGLVKEGKVKEAIE-VLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSM 461 (773)
Q Consensus 383 ~a~~~~G~~~eAl~-lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l 461 (773)
......+++++|.+ ++.. + ++......++..+.+.|.+++|+++.+... .-......+|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 34456889999877 5521 1 112233777788889999999987763211 123456778999
Q ss_pred HHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhc
Q 004114 462 DDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDY 541 (773)
Q Consensus 462 ~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~ 541 (773)
++|+++.+.+. +...|..|...+.+.|+++.|.+.|.++.. |..|...+...++.+...++.+.....
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~- 736 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT- 736 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 99999987764 668999999999999999999999998754 444555555577777655554443332
Q ss_pred CCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCC
Q 004114 542 GIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMP 574 (773)
Q Consensus 542 Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~ 574 (773)
| -++.-..+|.+.|++++|.+++.+++
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2 23445556667778888877777775
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.032 Score=51.47 Aligned_cols=110 Identities=12% Similarity=-0.031 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----CCChHHH
Q 004114 389 GKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE----CDSMDDA 464 (773)
Q Consensus 389 G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k----~G~l~eA 464 (773)
+++++|++.|++..+.| .|+.. |-..+.....++.|.+.|....+.| +...+..|-.+|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35677777777777776 33333 4444555566777777777777764 45566667677766 6677777
Q ss_pred HHHHHHhhc-CCHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 004114 465 FSVFSNMTE-RDLTSWDTMITGFAK----NGLGEDAVDIFSQFKQAG 506 (773)
Q Consensus 465 ~~lf~~M~~-~d~~tyn~LI~ay~~----~G~~deAl~Lf~eM~~~G 506 (773)
+..|++..+ .+..++..|-..|.. .++.++|+.+|++-.+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777776654 356666666666666 667777777777666654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.014 Score=62.50 Aligned_cols=137 Identities=13% Similarity=0.015 Sum_probs=60.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
+-..+.+.|++++|+..|.+..+. .|+... +...+..+++...+. ..+|..+..+|.+.|+
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIKLKR 245 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHHcCC
Confidence 344555667777777777766553 233221 112222333222111 1256666667777777
Q ss_pred hHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHH-HHcCCChHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQI-FIGVFSA-CSALGDVVEGMLHFE 535 (773)
Q Consensus 461 l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~T-y~~LL~a-~~~~G~~deA~~if~ 535 (773)
+++|+..|++..+ | +...|..+..+|...|++++|+..|++..+ +.|+... +..|... ....+..+++..+|.
T Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776652 2 556677777777777777777777776654 2344332 2222222 123345556666666
Q ss_pred HHH
Q 004114 536 SMS 538 (773)
Q Consensus 536 ~M~ 538 (773)
.|.
T Consensus 324 ~~l 326 (338)
T 2if4_A 324 GIF 326 (338)
T ss_dssp ---
T ss_pred Hhh
Confidence 664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.21 Score=57.60 Aligned_cols=154 Identities=9% Similarity=-0.021 Sum_probs=105.0
Q ss_pred hHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC--
Q 004114 461 MDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGL----------GEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALG-- 525 (773)
Q Consensus 461 l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~----------~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G-- 525 (773)
-++|++.++++.+ | +..+|+.--.++...|+ +++|+++++++.+..-+ +..+|..--.++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 3566777766653 2 44556655555555555 77888888888775432 4556666666667777
Q ss_pred ChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----------
Q 004114 526 DVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTG-YLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMH---------- 592 (773)
Q Consensus 526 ~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G-~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~---------- 592 (773)
+++++..+++++.+. -+-+...|+.---++.+.| ..++|.+.++++ ...| |...|+....++.+.
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 668888888887664 2234566666666677777 788888888887 4344 577888777776663
Q ss_pred ----CChhHHHHHHHHHHHcCCCCchHHH
Q 004114 593 ----GNLELGDRCAEIVEQLDPSRLNEKS 617 (773)
Q Consensus 593 ----G~~e~A~~~~e~m~el~p~~~~~y~ 617 (773)
+.+++|.+.++...+++|++..++.
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 4467888888888999999975543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.24 Score=57.12 Aligned_cols=136 Identities=9% Similarity=0.079 Sum_probs=79.2
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCCCHHHH
Q 004114 381 QLDGLVKEGKV-KEAIEVLGLLEKQCISVD-LPTFSQLMQACGDAKA----------LEEAKAVHEHVERLLSPLRVSTY 448 (773)
Q Consensus 381 LI~a~~~~G~~-~eAl~lf~~M~~~Gv~Pd-~~ty~~LL~a~~~~g~----------le~A~~l~~~m~k~G~~pd~~ty 448 (773)
.+.++.+.|.+ ++|+++++++.+. .|+ ..+|+.--.++...++ +++++++++.+++...+ +..+|
T Consensus 34 ~~~~~~~~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW 110 (567)
T 1dce_A 34 AVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTW 110 (567)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHH
Confidence 34444445543 4667888777765 333 3345544444444444 67777777777765433 55666
Q ss_pred HHHHHHHHhCC--ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 449 NGILKMYSECD--SMDDAFSVFSNMTE---RDLTSWDTMITGFAKNG-LGEDAVDIFSQFKQAGLKPDDQIFIGVFSA 520 (773)
Q Consensus 449 naLI~ay~k~G--~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G-~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a 520 (773)
.----++.+.+ ++++|++.+++|.+ ++..+|+----.+.+.| .++++++.++++.+.... |...|.....+
T Consensus 111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~l 187 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHH
Confidence 66666666666 55777777776663 35566666666666666 666777776666654322 34444444333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.06 Score=50.09 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=35.5
Q ss_pred hhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 549 HYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 549 tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
.|..+..+|.+.|++++|...++.. .+.| +...|..+-.++...|+++.|...++...+++|.+.
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 4444455555555555555555443 2222 345555566666666666666666666666666554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.016 Score=55.65 Aligned_cols=64 Identities=17% Similarity=0.117 Sum_probs=46.3
Q ss_pred hhhhHHHHHHhCCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 549 HYVSIVDMLGSTGYLDEALEFIEKM--------PMEPD-VDVW----EKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 549 tyn~LI~~y~r~G~l~eA~~lf~~M--------~~~Pd-~~ty----~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
.|..+-.++.+.|++++|+..+++. .+.|+ ...| ...-.++...|++++|...++...++.|++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 4444555555555555555554433 34776 4577 888889999999999999999999998876
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0098 Score=50.98 Aligned_cols=59 Identities=8% Similarity=-0.029 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 413 y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
+..+-..+...|++++|...++..++.. +.+..++..+..+|.+.|++++|+..|++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3334444444444444444444444432 1233444444444444444444444444433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=95.81 E-value=0.63 Score=52.52 Aligned_cols=257 Identities=6% Similarity=-0.041 Sum_probs=140.0
Q ss_pred CCCHHHHHHHHHHHHhcCCh-hHHHHhhhh--------ccHHHHHHHHH--------HcCCHHHHHHHHHHHHHCCCCCC
Q 004114 347 IQNGMMASQVLNNCKHEDDF-AEASRSSQN--------NGTLEQLDGLV--------KEGKVKEAIEVLGLLEKQCISVD 409 (773)
Q Consensus 347 ~pd~~~~n~LI~~y~k~g~~-~~A~~v~~~--------~~~~~LI~a~~--------~~G~~~eAl~lf~~M~~~Gv~Pd 409 (773)
.|++.+|...+....+.+.- +....++.. .....+=..|+ ..++++.+..+|++.+...+.--
T Consensus 44 ~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~ 123 (493)
T 2uy1_A 44 SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSL 123 (493)
T ss_dssp CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTH
T ss_pred CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhH
Confidence 47999999888888776632 222222111 00112333333 24567889999999887321111
Q ss_pred HHHHHHHHHHHH-------------hcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC-C------hHHHHHHHH
Q 004114 410 LPTFSQLMQACG-------------DAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD-S------MDDAFSVFS 469 (773)
Q Consensus 410 ~~ty~~LL~a~~-------------~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G-~------l~eA~~lf~ 469 (773)
...|......-. ....+..|+.++..+...--..+...|...++.-...+ . .+.+..+|+
T Consensus 124 ~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye 203 (493)
T 2uy1_A 124 SELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN 203 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence 112221111000 11223344555555443210123445666555433221 1 244677888
Q ss_pred Hhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcC----
Q 004114 470 NMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYG---- 542 (773)
Q Consensus 470 ~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~G---- 542 (773)
++.. | ....|-..+.-+.+.|+.++|..+|++.... |....+.. +|+.....++. ++.+...+-
T Consensus 204 ~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 204 YILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhcc
Confidence 8774 3 6778888888889999999999999999887 55443222 22222122222 333322210
Q ss_pred ----CCC---CcchhhhHHHHHHhCCCHHHHHHHHHhCCCC-CCHHHHH--HHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 543 ----IVP---SMKHYVSIVDMLGSTGYLDEALEFIEKMPME-PDVDVWE--KLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 543 ----i~P---d~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~-Pd~~ty~--~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
..+ ....|...+..+.+.+.++.|..+|+..... .+..+|. +.+...+ .++.+.|..+++...+..|+.
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~~ 353 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPDS 353 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTTC
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCCC
Confidence 001 1245677777777788899999999887211 2334443 3343333 336899999999988877776
Q ss_pred c
Q 004114 613 L 613 (773)
Q Consensus 613 ~ 613 (773)
+
T Consensus 354 ~ 354 (493)
T 2uy1_A 354 T 354 (493)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.061 Score=51.66 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCCCCHH-HH----HHHHHHHHcCCChHHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQA-----GLKPDDQ-IF----IGVFSACSALGDVVEGMLHFESMS 538 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~-----Gv~Pd~~-Ty----~~LL~a~~~~G~~deA~~if~~M~ 538 (773)
.|..+-.++.+.|++++|+..|++.++. -+.|+.. .| ...-.++...|++++|+..|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 6777777777777777777777776652 1256543 45 566666777777777777776654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.095 Score=45.60 Aligned_cols=78 Identities=10% Similarity=-0.006 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 393 EAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 393 eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
+|++.|.+..+.. +-+...+..+..++...|++++|...++..++.. +.+..+|..+..+|.+.|+.++|+..|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666665542 2255666677777777777777777777777653 2345666777777777777777777776654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.048 Score=46.45 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
.|..+...+...|++++|++.|++..+.. ..+..++..+-.++...|++++|+..+++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34444444444444444444444444321 112333334444444444444444444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.033 Score=48.68 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 429 AKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 429 A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
|...++..++.. +.+...+..+..+|.+.|++++|+..|++..+ | +...|..+..+|...|++++|+..|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555554432 22455555566666666666666666665542 2 345555555666666666666666655543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.93 Score=48.93 Aligned_cols=166 Identities=11% Similarity=0.126 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHc-C-ChHHHHH
Q 004114 424 KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD-SMDDAFSVFSNMTE---RDLTSWDTMITGFAKN-G-LGEDAVD 497 (773)
Q Consensus 424 g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G-~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~-G-~~deAl~ 497 (773)
..-++|+++++.++..... +..+|+.--..+...| .+++++++++.+.. ++..+|+.-...+... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3446788899988887533 5667887777777778 59999999998874 3667788777777766 6 8889999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCChH--------HHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCC-------
Q 004114 498 IFSQFKQAGLKPDDQIFIGVFSACSALGDVV--------EGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGY------- 562 (773)
Q Consensus 498 Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~d--------eA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~------- 562 (773)
+++++.+...+ +..+|..-.-.+.+.+.++ ++++.++++.+. -.-+...|+..-.++.+.++
T Consensus 147 ~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHH
Confidence 99988875432 4555554444444434343 566666666553 12244445554445555444
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 004114 563 LDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHG 593 (773)
Q Consensus 563 l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G 593 (773)
++++++.++++ ...| |...|..+-..+.+.|
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 44555555443 1122 3445544444444333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.12 Score=47.50 Aligned_cols=110 Identities=12% Similarity=-0.007 Sum_probs=86.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-CCHhHHHHHHHHHHH----cCChHHHHH
Q 004114 423 AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE-RDLTSWDTMITGFAK----NGLGEDAVD 497 (773)
Q Consensus 423 ~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~-~d~~tyn~LI~ay~~----~G~~deAl~ 497 (773)
.+++++|...|....+.|. ++.. |-.+|...+.+++|++.|++..+ .+...+..|-..|.. .++.++|++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3468899999999998883 3443 77777777888999999987765 477888888888888 788999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHh
Q 004114 498 IFSQFKQAGLKPDDQIFIGVFSACSA----LGDVVEGMLHFESMSKD 540 (773)
Q Consensus 498 Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~----~G~~deA~~if~~M~~~ 540 (773)
+|++..+.| +...+..|-..|.. .++.++|..+|+...+.
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999988875 45566666667766 78888888888877554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.27 Score=39.96 Aligned_cols=26 Identities=15% Similarity=0.424 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
+|..+...|...|++++|+..|++..
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 45 AWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33334444444444444444444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.24 Score=40.33 Aligned_cols=64 Identities=13% Similarity=0.224 Sum_probs=41.7
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 004114 476 LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKD 540 (773)
Q Consensus 476 ~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~ 540 (773)
...|..+...|...|++++|+..|++..+.. .-+..++..+..++...|++++|...|++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455666666777777777777777766542 123456666667777777777777777766543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.076 Score=59.24 Aligned_cols=82 Identities=6% Similarity=-0.046 Sum_probs=50.9
Q ss_pred hcCCHHHHHHHHHHHHHh---CCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHhhc----------C-CHhHHHHHH
Q 004114 422 DAKALEEAKAVHEHVERL---LSPLR----VSTYNGILKMYSECDSMDDAFSVFSNMTE----------R-DLTSWDTMI 483 (773)
Q Consensus 422 ~~g~le~A~~l~~~m~k~---G~~pd----~~tynaLI~ay~k~G~l~eA~~lf~~M~~----------~-d~~tyn~LI 483 (773)
..|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|+.++++..+ | ...+++.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346677777777666553 11121 35677777777777777777777766542 1 234566677
Q ss_pred HHHHHcCChHHHHHHHHHHH
Q 004114 484 TGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 484 ~ay~~~G~~deAl~Lf~eM~ 503 (773)
..|...|++++|+.+|++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 77777777777777766543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.29 Score=41.85 Aligned_cols=61 Identities=25% Similarity=0.176 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004114 410 LPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNM 471 (773)
Q Consensus 410 ~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M 471 (773)
...+..+..++...|++++|...|+..++... -+..+|..|-.+|.+.|++++|++.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444555555555555555555555555432 13344555555555555555555555543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=94.34 E-value=0.14 Score=43.93 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=31.3
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 475 DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 475 d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
+...|..+...|...|++++|+..|++..+.... +..+|..+-.++...|++++|...|++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555555555555555555555543211 2334445555555555555555555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.17 Score=56.19 Aligned_cols=90 Identities=13% Similarity=0.028 Sum_probs=52.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CC-CCC-HH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQC---ISVD----LPTFSQLMQACGDAKALEEAKAVHEHVERL-----LS-PLR-VS 446 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~G---v~Pd----~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-----G~-~pd-~~ 446 (773)
.|..+.+.|++++|++++++.++.- +.|+ ..+++.|..+|...|++++|+.++.++++. |- .|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 4566667778888888877776431 1221 235666666677777777777776665542 11 111 33
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSN 470 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~ 470 (773)
+++.|-..|...|++++|+.++++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 455555566666666666655554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=94.21 E-value=0.32 Score=52.93 Aligned_cols=72 Identities=15% Similarity=-0.026 Sum_probs=57.3
Q ss_pred CCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchH
Q 004114 544 VPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 544 ~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
+.+..+|.++.-++...|++++|...+++. .+.|+...|..+-..+...|+.++|...++...+++|.....
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 446677777777777779999999999887 445787777777778888999999999999999999877543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.24 Score=55.11 Aligned_cols=85 Identities=8% Similarity=-0.076 Sum_probs=54.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHhC---CCCC----HHHHHHHHHHHHhCCChHHHHHHHHHhhc----------C-CHhHHH
Q 004114 419 ACGDAKALEEAKAVHEHVERLL---SPLR----VSTYNGILKMYSECDSMDDAFSVFSNMTE----------R-DLTSWD 480 (773)
Q Consensus 419 a~~~~g~le~A~~l~~~m~k~G---~~pd----~~tynaLI~ay~k~G~l~eA~~lf~~M~~----------~-d~~tyn 480 (773)
.+.+.|++++|+.++++.++.- +.++ ..+++.|..+|...|++++|+.+++++.+ | ...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3456677788888877776541 1122 45677777777777777777777766542 1 234566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 004114 481 TMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 481 ~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
.|...|...|++++|+.++++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 67777777777777777666554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.14 Score=49.10 Aligned_cols=93 Identities=13% Similarity=0.116 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHhhc--C-CHhHHHHHHHHHHHc--
Q 004114 425 ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS----------MDDAFSVFSNMTE--R-DLTSWDTMITGFAKN-- 489 (773)
Q Consensus 425 ~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~----------l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~-- 489 (773)
.+++|...++..++.. +-+...|..+-.++.+.++ +++|+..|++..+ | +..+|..+-.+|...
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 3444444444444432 1234444444444444433 4577777766652 3 556677777777665
Q ss_pred ---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004114 490 ---------GLGEDAVDIFSQFKQAGLKPDDQIFIGVFSA 520 (773)
Q Consensus 490 ---------G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a 520 (773)
|++++|++.|++..+ +.|+..+|...+..
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 478888888888877 46777767655554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=93.49 E-value=0.7 Score=50.26 Aligned_cols=136 Identities=7% Similarity=-0.017 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHH----hCC----C---hHHHHHHHH
Q 004114 407 SVDLPTFSQLMQACGD-----AKALEEAKAVHEHVERLLSPLR-VSTYNGILKMYS----ECD----S---MDDAFSVFS 469 (773)
Q Consensus 407 ~Pd~~ty~~LL~a~~~-----~g~le~A~~l~~~m~k~G~~pd-~~tynaLI~ay~----k~G----~---l~eA~~lf~ 469 (773)
+.+...|...+.+... ...+.+|+.+|++.++. .|+ ...|..+.-+|. ... . +..|.+...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3455556665555432 12356777777777775 344 333433333332 100 0 111111111
Q ss_pred Hhh--cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCc
Q 004114 470 NMT--ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSM 547 (773)
Q Consensus 470 ~M~--~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~ 547 (773)
.+. ..+..+|.++...+...|++++|+..+++....+ |+...|..+-..+...|+.++|.+.|++... +.|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCc
Confidence 111 2356666666666666677777777777777764 6666666666666777777777777765533 34544
Q ss_pred ch
Q 004114 548 KH 549 (773)
Q Consensus 548 ~t 549 (773)
.+
T Consensus 344 ~t 345 (372)
T 3ly7_A 344 NT 345 (372)
T ss_dssp HH
T ss_pred Ch
Confidence 44
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.39 E-value=1.3 Score=43.12 Aligned_cols=129 Identities=14% Similarity=0.092 Sum_probs=81.5
Q ss_pred HHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 004114 453 KMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGML 532 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~ 532 (773)
+....+|+++.|.++.+++ .+...|..|-......|+++-|.+.|.+... |..|+--|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4455678888888887766 4667888888888888888888888877543 3444444555666665554
Q ss_pred HHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004114 533 HFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEIV 605 (773)
Q Consensus 533 if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m 605 (773)
+-+....+ | -++.-...+.-.|+++++.++|.+.+.-|.... ....+|..+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 43322222 2 345556667778899999999888864332221 123366666666665543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.1 Score=58.23 Aligned_cols=97 Identities=9% Similarity=-0.019 Sum_probs=58.6
Q ss_pred cHHHHHHHHhhchHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHhhhhccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004114 323 QWDQSRRQYQQNPNEGQYQSYSGNIQNGMMASQVLNNCKHEDDFAEASRSSQNNGTLEQLDGLVKEGKVKEAIEVLGLLE 402 (773)
Q Consensus 323 ~w~~a~~~f~~~~~~~~~m~~~gl~pd~~~~n~LI~~y~k~g~~~~A~~v~~~~~~~~LI~a~~~~G~~~eAl~lf~~M~ 402 (773)
+|.++...++++.++...+.......-..+++.|..+|...|++++|..+ .++|++++++..
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~------------------~~~aL~i~~~~l 374 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKY------------------GQKIIKPYSKHY 374 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH------------------HHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHH------------------HHHHHHHHHHHc
Confidence 45666666666555443322222222234566666666666666666663 344555555443
Q ss_pred HCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004114 403 KQCISVD-LPTFSQLMQACGDAKALEEAKAVHEHVER 438 (773)
Q Consensus 403 ~~Gv~Pd-~~ty~~LL~a~~~~g~le~A~~l~~~m~k 438 (773)
-.. .|+ ..+|+.|-..|...|++++|+.++++.++
T Consensus 375 G~~-Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 375 PVY-SLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp CSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCC-ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 322 333 34788889999999999999999887765
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.59 Score=38.98 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=40.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLP-TFSQLMQACGDAKALEEAKAVHEHVERLL 440 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~-ty~~LL~a~~~~g~le~A~~l~~~m~k~G 440 (773)
....+.+.|++++|++.|++..+.. .-+.. .+..+-.++...|++++|...|+..++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4455667777788888877777652 22445 66666777777777777777777777764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=91.15 E-value=0.49 Score=39.48 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=40.8
Q ss_pred HHHHHhCCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 554 VDMLGSTGYLDEALEFIEKM-PMEP-DVD-VWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 554 I~~y~r~G~l~eA~~lf~~M-~~~P-d~~-ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
...+.+.|++++|.+.|++. ...| +.. .|..+-.++...|++++|...++...+++|++..++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 44556667777777777665 2233 345 666666677777777777777777777777765443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.58 E-value=0.67 Score=44.30 Aligned_cols=113 Identities=12% Similarity=0.028 Sum_probs=79.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKA----------LEEAKAVHEHVERLLSPLRVSTYNGILKM 454 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~----------le~A~~l~~~m~k~G~~pd~~tynaLI~a 454 (773)
..+.+.+++|+..+++..+.. +-+...|..+-.++...+. +++|+..|++.++.... ...+|..|-.+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 345667889999999988763 3367777777777777665 46999999999987532 57788899999
Q ss_pred HHhCC-----------ChHHHHHHHHHhh--cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 455 YSECD-----------SMDDAFSVFSNMT--ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 455 y~k~G-----------~l~eA~~lf~~M~--~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
|.+.| ++++|+..|++.. +|+-..|..-+.. .++|.+++-+....
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~------~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM------TAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH------HHTHHHHHHHHHHS
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH------HHhCHhccCccccc
Confidence 98774 8999999999887 4665554433332 24455555444433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.15 E-value=0.78 Score=43.55 Aligned_cols=72 Identities=14% Similarity=0.015 Sum_probs=45.5
Q ss_pred CCcchhhhHHHHHHhCC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 545 PSMKHYVSIVDMLGSTG---YLDEALEFIEKM-PME-P--DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 545 Pd~~tyn~LI~~y~r~G---~l~eA~~lf~~M-~~~-P--d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
++..+.-.+.-++++.. +++++..+|++. ... | ....+-.|--++.+.|++++|.+.++.+.+++|++..+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34444444445555555 444555555544 112 3 234455666788999999999999999999999885443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=87.15 E-value=2.1 Score=36.87 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=44.7
Q ss_pred hhhhHHHHHHhCCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchH
Q 004114 549 HYVSIVDMLGSTGYLDEALEFIEKM-----P----MEPDVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 549 tyn~LI~~y~r~G~l~eA~~lf~~M-----~----~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~ 615 (773)
-+..|-..+.+.|++..|...|+.. + -.+...++..|..++.+.|+++.|...++.+.+++|++..+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3344455555555555555555443 0 12346677888888888888888888888888888888544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.62 E-value=24 Score=34.10 Aligned_cols=128 Identities=12% Similarity=0.059 Sum_probs=75.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHH
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIF 499 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf 499 (773)
....|+++.|.++.+.+ -+...|..|-+...+.|+++-|++.|..... |..+.--|.-.|+.++..++-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHH
Confidence 44667777777776654 3566788888888888888888888877653 344444555566666655544
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCC
Q 004114 500 SQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMP 574 (773)
Q Consensus 500 ~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~ 574 (773)
+.-...| -++....++...|+++++.++|.+. |..|.. +-.....|.-+.|.++.++++
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~----~r~~eA------~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG----GSLPLA------YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT----TCHHHH------HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC----CChHHH------HHHHHHcCcHHHHHHHHHHhC
Confidence 4433333 1444445555677888777776543 221210 111122456667777777764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.16 E-value=5.6 Score=37.60 Aligned_cols=83 Identities=11% Similarity=0.015 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHhhcCC-----HhHHHHHHHHHHHcCChHHHHH
Q 004114 426 LEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD---SMDDAFSVFSNMTERD-----LTSWDTMITGFAKNGLGEDAVD 497 (773)
Q Consensus 426 le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G---~l~eA~~lf~~M~~~d-----~~tyn~LI~ay~~~G~~deAl~ 497 (773)
+..+++-|....+.+. ++..+...+--++++.. ++++++.+|++..+.+ ...+-.|--+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4445555555555443 45556666666666666 5556766666655332 2334445566677777777777
Q ss_pred HHHHHHHCCCCCCH
Q 004114 498 IFSQFKQAGLKPDD 511 (773)
Q Consensus 498 Lf~eM~~~Gv~Pd~ 511 (773)
.++.+++ +.|+-
T Consensus 93 y~~~lL~--ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHh--cCCCC
Confidence 7777776 45643
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.35 E-value=6.1 Score=42.90 Aligned_cols=129 Identities=11% Similarity=0.044 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHh--CCC-CCHHHHHHHHHHHHhCCChHHH-HHHHHHhhcCCHhHHH
Q 004114 408 VDLPTFSQLMQACG---DAKALEEAKAVHEHVERL--LSP-LRVSTYNGILKMYSECDSMDDA-FSVFSNMTERDLTSWD 480 (773)
Q Consensus 408 Pd~~ty~~LL~a~~---~~g~le~A~~l~~~m~k~--G~~-pd~~tynaLI~ay~k~G~l~eA-~~lf~~M~~~d~~tyn 480 (773)
.|...|..++.... ..|+.+.|.+.+..++.. |-. ++.. ...+-.+ ..-++++ =..+..
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~---~~~a~~ 175 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVED---KVLAHT 175 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHH---HHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHH---HHHHHH
Confidence 35566666665433 357888888888877765 321 1110 0111111 1112211 123445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH----hcCCCCCcchhh
Q 004114 481 TMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK----DYGIVPSMKHYV 551 (773)
Q Consensus 481 ~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~----~~Gi~Pd~~tyn 551 (773)
.++..+...|++++|+..+..+.... .-+...+..||.++...|+..+|.++|+.+.+ ++|+.|...+-.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 67788889999999999888887642 33677899999999999999999998887644 569999876643
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=84.91 E-value=5.3 Score=37.33 Aligned_cols=59 Identities=19% Similarity=0.076 Sum_probs=29.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLS 441 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~ 441 (773)
++.++..|+-+.-.+++..+.. ..+|++...-.+..||.+.|+..+|.+++.+..+.|+
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 4445555555555555544322 2344455555555555555555555555555555554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.12 E-value=21 Score=39.49 Aligned_cols=185 Identities=12% Similarity=0.160 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCCHHH--HHHHHHHHHhCCC
Q 004114 389 GKVKEAIEVLGLLEKQ-----CISVDLPTFSQLMQACGDAKALEEAKAVHEHVERL-LSPLRVST--YNGILKMYSECDS 460 (773)
Q Consensus 389 G~~~eAl~lf~~M~~~-----Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~-G~~pd~~t--ynaLI~ay~k~G~ 460 (773)
+++++|++.+..+.+. ...-.......++..|...++++...+.+..+.+. |......+ ...+++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5677777777666532 24445667788888999999999888877766554 43322221 1222333333332
Q ss_pred hH--HHHHHHHHhhc----C------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHc
Q 004114 461 MD--DAFSVFSNMTE----R------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA--GLKPD---DQIFIGVFSACSA 523 (773)
Q Consensus 461 l~--eA~~lf~~M~~----~------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~--Gv~Pd---~~Ty~~LL~a~~~ 523 (773)
.+ .-..+.+.... + -......|...|...|++.+|.+++.++... |.... ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 22223322221 1 1123456778889999999999999998653 32222 2356777888999
Q ss_pred CCChHHHHHHHHHHHHh-cCC--CCC--cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 524 LGDVVEGMLHFESMSKD-YGI--VPS--MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 524 ~G~~deA~~if~~M~~~-~Gi--~Pd--~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
.+++..|..++.++... ... .|+ ...|.+++..+...+++.+|...|.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999888886432 112 222 356778888888899999888777665
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=83.72 E-value=29 Score=32.47 Aligned_cols=84 Identities=11% Similarity=0.118 Sum_probs=57.2
Q ss_pred hCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 004114 457 ECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFES 536 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~ 536 (773)
+||.+......+-.+- .+....+.-++.+...|+-|.-.+++.++.. +-+|+......+..||.+.|+..+|.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4555555555554443 3445566677778888888888888877533 3566777778888888888888888888777
Q ss_pred HHHhcCC
Q 004114 537 MSKDYGI 543 (773)
Q Consensus 537 M~~~~Gi 543 (773)
.-+. |+
T Consensus 151 AC~k-G~ 156 (172)
T 1wy6_A 151 ACKK-GE 156 (172)
T ss_dssp HHHT-TC
T ss_pred HHHh-hh
Confidence 6655 54
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=83.03 E-value=6.9 Score=33.27 Aligned_cols=62 Identities=5% Similarity=0.004 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHhCCC---hHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004114 444 RVSTYNGILKMYSECDS---MDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQA 505 (773)
Q Consensus 444 d~~tynaLI~ay~k~G~---l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~ 505 (773)
+...+..+..++...++ .++|..+|++..+ | ++.++..+-..+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444433222 4555555555442 2 3444445555555566666666666655553
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=81.75 E-value=5.2 Score=36.63 Aligned_cols=75 Identities=17% Similarity=0.061 Sum_probs=47.0
Q ss_pred CCcchhhhHHHHHHhCCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHH
Q 004114 545 PSMKHYVSIVDMLGSTGYLDE---ALEFIEKM-PME-P--DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKS 617 (773)
Q Consensus 545 Pd~~tyn~LI~~y~r~G~l~e---A~~lf~~M-~~~-P--d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~ 617 (773)
++..+--.+.-++.+...... +..+++++ ... | .....-.|.-++.+.|++++|.+.++.+.+++|++..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444445555555554443 55666555 212 3 1223335666889999999999999999999999865544
Q ss_pred Hc
Q 004114 618 KA 619 (773)
Q Consensus 618 ~a 619 (773)
..
T Consensus 113 Lk 114 (126)
T 1nzn_A 113 LE 114 (126)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=80.90 E-value=9.4 Score=32.41 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc
Q 004114 408 VDLPTFSQLMQACGDAKA---LEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE 473 (773)
Q Consensus 408 Pd~~ty~~LL~a~~~~g~---le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~ 473 (773)
.|...+..+..++...++ .++|..++++.++.. +-++.....|-..+.+.|++++|+..|+++.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555565566554433 688888888887764 22566666677778888888888888888774
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=80.60 E-value=0.041 Score=61.67 Aligned_cols=162 Identities=13% Similarity=0.185 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc--CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE--RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSAL 524 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~--~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~ 524 (773)
.|..+|.+..+.|.+++-++.+....+ ++...=+.||-+|++.++..+..+++ -.|+..-...+-.-|...
T Consensus 85 ~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e 157 (624)
T 3lvg_A 85 SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDE 157 (624)
T ss_dssp SSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHc
Confidence 344555555555555555555443332 23344455666666666655544433 135555556666666677
Q ss_pred CChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004114 525 GDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEKLMNLCRMHGNLELGDRCAEI 604 (773)
Q Consensus 525 G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e~ 604 (773)
|.++.|..+|..+ .-|.-|...|.+.|++..|.+.-.+. -+..||.-+-.||...+.+..|..+--.
T Consensus 158 ~lYeAAKilys~i----------sN~akLAstLV~L~~yq~AVdaArKA---ns~ktWKeV~~ACvd~~EfrLAqicGLn 224 (624)
T 3lvg_A 158 KMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLH 224 (624)
T ss_dssp CCSTTSSTTGGGS----------CCCTTTSSSSSSCSGGGSSTTTTTTC---CSSCSHHHHTHHHHHSCTTTTTTHHHHH
T ss_pred cCHHHHHHHHHhC----------ccHHHHHHHHHHHHHHHHHHHHHHhc---CChhHHHHHHHHHhCchHHHHHHHhcch
Confidence 7766666655433 22334444456667777666655544 3677999999999999999998655433
Q ss_pred HHHcCCCCc----hHHHHcCCchhhhhHH
Q 004114 605 VEQLDPSRL----NEKSKAGLVPVNASEL 629 (773)
Q Consensus 605 m~el~p~~~----~~y~~aG~~~~~v~~l 629 (773)
+. +.|+.+ ..|...|.+.+.+.-+
T Consensus 225 iI-vhadeL~elv~~YE~~G~f~ELIsLl 252 (624)
T 3lvg_A 225 IV-VHADELEELINYYQDRGYFEELITML 252 (624)
T ss_dssp HH-CCSSCCSGGGSSSSTTCCCTTSTTTH
T ss_pred hc-ccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 32 234432 5678888886554433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 773 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.58 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.47 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.31 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.0 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.51 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.49 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.45 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.45 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.41 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.37 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.36 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.1 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.04 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.96 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.78 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.64 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.41 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.34 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.34 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 97.28 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.27 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.18 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.13 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.12 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.05 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.88 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.81 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.81 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 96.77 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.54 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.4 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 96.29 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.27 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.21 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.09 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.01 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 95.99 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 95.95 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 95.71 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 95.7 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 95.33 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 94.84 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 94.8 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 94.64 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 94.64 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 94.44 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 94.36 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 94.06 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 93.73 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 92.35 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 92.27 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 88.88 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 88.57 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 88.22 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.7e-12 Score=133.66 Aligned_cols=268 Identities=14% Similarity=0.122 Sum_probs=211.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhhh---------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC------------
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQN---------NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCIS------------ 407 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~~---------~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~------------ 407 (773)
++.++..+..+|.+.|++++|...+.. ..+..+...|.+.|++++|++.+..+.+....
T Consensus 32 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (388)
T d1w3ba_ 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccc
Confidence 566777777888888888888875321 12223667777888888888877766543211
Q ss_pred ------------------------------------------------------C-CHHHHHHHHHHHHhcCCHHHHHHH
Q 004114 408 ------------------------------------------------------V-DLPTFSQLMQACGDAKALEEAKAV 432 (773)
Q Consensus 408 ------------------------------------------------------P-d~~ty~~LL~a~~~~g~le~A~~l 432 (773)
| +..++..+...+...+.+++|...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 191 (388)
T d1w3ba_ 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHH
Confidence 1 234455556667778899999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004114 433 HEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP 509 (773)
Q Consensus 433 ~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P 509 (773)
+...++.. +-+..++..+..+|...|++++|+..|+++.. .+...|..+...|.+.|++++|+..|++..+. .|
T Consensus 192 ~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p 268 (388)
T d1w3ba_ 192 FEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QP 268 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CS
T ss_pred HHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CC
Confidence 99888864 33577888999999999999999999998764 46778888999999999999999999998875 34
Q ss_pred C-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 004114 510 D-DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLM 586 (773)
Q Consensus 510 d-~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI 586 (773)
+ ..++..+..++...|++++|..++...... .+.+...+..+..+|.+.|++++|.+.|++. .+.|+ ..+|..+.
T Consensus 269 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 346 (388)
T d1w3ba_ 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4 567888899999999999999999988665 4556788889999999999999999999876 55665 67888899
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcCC
Q 004114 587 NLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAGL 621 (773)
Q Consensus 587 ~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG~ 621 (773)
.++...|++++|...++...+++|+++.++...|.
T Consensus 347 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~ 381 (388)
T d1w3ba_ 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999998766655443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4e-11 Score=124.64 Aligned_cols=255 Identities=15% Similarity=0.097 Sum_probs=196.9
Q ss_pred HHHHHHhcCChhHHHHhhh---------hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004114 356 VLNNCKHEDDFAEASRSSQ---------NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKAL 426 (773)
Q Consensus 356 LI~~y~k~g~~~~A~~v~~---------~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~l 426 (773)
|-..+-+.|++++|...+. ...+..+...|.+.|++++|+.+|++..+.. +-+..++..+..++.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 3455667788888888531 1122236778889999999999999998763 22567888999999999999
Q ss_pred HHHHHHHHHHHHhCCC----------------------------------------------------------------
Q 004114 427 EEAKAVHEHVERLLSP---------------------------------------------------------------- 442 (773)
Q Consensus 427 e~A~~l~~~m~k~G~~---------------------------------------------------------------- 442 (773)
++|...+..+.+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 9999998877664321
Q ss_pred ---CCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 004114 443 ---LRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIG 516 (773)
Q Consensus 443 ---pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~ 516 (773)
-+..++..+...+...|+.++|...+++..+ | +..+|..+...|...|++++|+..|.++..... .+..++..
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 242 (388)
T d1w3ba_ 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGN 242 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHH
Confidence 1234455566777788888999988887653 3 567888888899999999999999998877543 35567777
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcC
Q 004114 517 VFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM--PMEPDVDVWEKLMNLCRMHG 593 (773)
Q Consensus 517 LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~~~~G 593 (773)
+..++...|++++|..+|++..+. .| +..++..+..+|...|++++|.+.++.. ....+...+..+...+...|
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC
Confidence 888888999999999999887653 34 4577888888999999999999998876 22346778888888899999
Q ss_pred ChhHHHHHHHHHHHcCCCCchH
Q 004114 594 NLELGDRCAEIVEQLDPSRLNE 615 (773)
Q Consensus 594 ~~e~A~~~~e~m~el~p~~~~~ 615 (773)
++++|...++...++.|+++.+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999998899988643
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.8e-10 Score=119.16 Aligned_cols=238 Identities=11% Similarity=0.067 Sum_probs=186.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
..-..+.+.|++++|+.+|+++++.. +-+..+|..+..++...|++++|...+...++.. +-+...+..+..+|.+.|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 35567889999999999999999863 2257789999999999999999999999999875 336788899999999999
Q ss_pred ChHHHHHHHHHhhc--CC----------------HhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 004114 460 SMDDAFSVFSNMTE--RD----------------LTSWDTMITGFAKNGLGEDAVDIFSQFKQAG-LKPDDQIFIGVFSA 520 (773)
Q Consensus 460 ~l~eA~~lf~~M~~--~d----------------~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G-v~Pd~~Ty~~LL~a 520 (773)
++++|.++++++.. |+ ......++..+...+..++|.+.|.+..... -.++..++..+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 99999999998763 21 1112223344555677888999998877643 23456778888889
Q ss_pred HHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 004114 521 CSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELG 598 (773)
Q Consensus 521 ~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A 598 (773)
+...|++++|+.+|+..... .+-+...|..+..+|.+.|++++|.+.|++. .+.| +..+|..|..+|...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999988664 2234678888999999999999999999876 4445 477899999999999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHcCC
Q 004114 599 DRCAEIVEQLDPSRLNEKSKAGL 621 (773)
Q Consensus 599 ~~~~e~m~el~p~~~~~y~~aG~ 621 (773)
...++...++.|++.......+.
T Consensus 260 ~~~~~~al~l~p~~~~~~~~~~~ 282 (323)
T d1fcha_ 260 VEHFLEALNMQRKSRGPRGEGGA 282 (323)
T ss_dssp HHHHHHHHHHHHTC------CCC
T ss_pred HHHHHHHHHhCCcChhhhhhhHH
Confidence 99999999998887544443333
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=3.3e-08 Score=101.62 Aligned_cols=212 Identities=13% Similarity=0.081 Sum_probs=164.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChH
Q 004114 417 MQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGE 493 (773)
Q Consensus 417 L~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~d 493 (773)
-..+.+.|++++|...|+.+++.. +-+..+|..|..+|.+.|++++|+..|++..+ | +...|..+...|...|+++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 445778999999999999999864 33678899999999999999999999998763 3 6788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH----------------HHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHH
Q 004114 494 DAVDIFSQFKQAGLKPDDQ----------------IFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDML 557 (773)
Q Consensus 494 eAl~Lf~eM~~~Gv~Pd~~----------------Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y 557 (773)
+|++.+++..... |+.. .....+..+...+..++|...|....+...-..+..++..+...+
T Consensus 105 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 105 QACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 9999999987642 2211 111222333445667788888887765433334566788888999
Q ss_pred HhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCch-------HHHHcCCchhhhhH
Q 004114 558 GSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLN-------EKSKAGLVPVNASE 628 (773)
Q Consensus 558 ~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~-------~y~~aG~~~~~v~~ 628 (773)
.+.|++++|...|++. ...| +..+|..+..++...|++++|...++...+++|.++. +|...|.+...+..
T Consensus 183 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 262 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 262 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999986 3344 4788999999999999999999999999999999874 45566666544443
Q ss_pred HHH
Q 004114 629 LAK 631 (773)
Q Consensus 629 lmk 631 (773)
..+
T Consensus 263 ~~~ 265 (323)
T d1fcha_ 263 FLE 265 (323)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=1.3e-07 Score=97.78 Aligned_cols=186 Identities=11% Similarity=0.085 Sum_probs=151.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-C-HhHHHHHHHHHHHcCChHHHHHHH
Q 004114 424 KALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-D-LTSWDTMITGFAKNGLGEDAVDIF 499 (773)
Q Consensus 424 g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d-~~tyn~LI~ay~~~G~~deAl~Lf 499 (773)
+..++|..+++..++...+.+...|..++..+.+.|+++.|..+|+++.+ | + ...|...+..+.+.|..++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34688999999988765566778899999999999999999999999874 2 3 457999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHH-HHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC----C
Q 004114 500 SQFKQAGLKPDDQIFIGVF-SACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM----P 574 (773)
Q Consensus 500 ~eM~~~Gv~Pd~~Ty~~LL-~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M----~ 574 (773)
+++.+..... ...|.... --+...|+.+.|..+|+.+.+. .+-+...|...++.+.+.|+++.|..+|++. +
T Consensus 158 ~~al~~~~~~-~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDARTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTCC-THHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCCc-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 9998765332 23333322 2344568999999999999876 3445788999999999999999999999985 3
Q ss_pred CCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 575 MEPD--VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 575 ~~Pd--~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
..|+ ..+|...+..-..+|+++.+..+.+.+.++.|+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 3443 5689999998899999999999999999887766
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=8.2e-06 Score=84.64 Aligned_cols=215 Identities=8% Similarity=0.089 Sum_probs=153.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISV-DLPTFSQLMQACGDAK-ALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD 459 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~P-d~~ty~~LL~a~~~~g-~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G 459 (773)
-..+.+.+..++|+++++++.+. .| +...|.....++...+ ++++|+..++..++... -+..+|..+...+.+.|
T Consensus 50 ~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~~~~l~ 126 (315)
T d2h6fa1 50 RAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLR 126 (315)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHHHHhhc
Confidence 34466778889999999999886 45 4557777777777766 59999999999988753 36889999999999999
Q ss_pred ChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC------hHHH
Q 004114 460 SMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGD------VVEG 530 (773)
Q Consensus 460 ~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~------~deA 530 (773)
+.++|+..|+++.+ .+..+|..+...+...|++++|++.|+++++.... +...|..+...+.+.+. +++|
T Consensus 127 ~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~~~~a 205 (315)
T d2h6fa1 127 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLERE 205 (315)
T ss_dssp CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred cHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhhhHHh
Confidence 99999999998874 37889999999999999999999999999885422 45567666555555554 5677
Q ss_pred HHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHc--CChhHHHHHHH
Q 004114 531 MLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGYLDEALEFIEKM----PMEPDVDVWEKLMNLCRMH--GNLELGDRCAE 603 (773)
Q Consensus 531 ~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~l~eA~~lf~~M----~~~Pd~~ty~~LI~a~~~~--G~~e~A~~~~e 603 (773)
...+....+. .| +...|..+...|...| +++|.++++.. +...+...+..++..|... +..+.+...++
T Consensus 206 i~~~~~al~~---~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ 281 (315)
T d2h6fa1 206 VQYTLEMIKL---VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILN 281 (315)
T ss_dssp HHHHHHHHHH---STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHh---CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7777776553 34 4566666655554443 45565555544 3333566666677666443 44444444433
Q ss_pred H
Q 004114 604 I 604 (773)
Q Consensus 604 ~ 604 (773)
.
T Consensus 282 k 282 (315)
T d2h6fa1 282 K 282 (315)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.49 E-value=2.4e-06 Score=87.99 Aligned_cols=184 Identities=10% Similarity=0.058 Sum_probs=145.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 004114 389 GKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVF 468 (773)
Q Consensus 389 G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf 468 (773)
+..++|..+|++..+...+-+...|...+....+.|+++.|+.+++.+++........+|..++..+.+.|+++.|+++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45678899999988765555667788888888899999999999999987644434568999999999999999999999
Q ss_pred HHhhcC---CHhHHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCC
Q 004114 469 SNMTER---DLTSWDTMITG-FAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIV 544 (773)
Q Consensus 469 ~~M~~~---d~~tyn~LI~a-y~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~ 544 (773)
+++.+. +...|-..... +...|+.+.|..+|+.+... ..-+...+...+..+...|+++.|+.+|++..+..+..
T Consensus 158 ~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 998743 33333333322 33468899999999999885 23346678899999999999999999999987765555
Q ss_pred CC--cchhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 545 PS--MKHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 545 Pd--~~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
|. ...|...+..-...|+++.|.+++++|
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54 347888888888899999999999876
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=1.8e-05 Score=79.45 Aligned_cols=252 Identities=13% Similarity=-0.002 Sum_probs=145.6
Q ss_pred HHHHHhcCChhHHHHhhh-------hc-------cHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHH
Q 004114 357 LNNCKHEDDFAEASRSSQ-------NN-------GTLEQLDGLVKEGKVKEAIEVLGLLEKQCI-SVD----LPTFSQLM 417 (773)
Q Consensus 357 I~~y~k~g~~~~A~~v~~-------~~-------~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv-~Pd----~~ty~~LL 417 (773)
...+...|++++|..++. .. .+..+...|...|++++|+..|.+..+... .++ ..++..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 345566777777777421 00 111245566777888888888777654210 111 22444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh----CCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHhhcC--------CHhHHHHH
Q 004114 418 QACGDAKALEEAKAVHEHVERL----LSPLR---VSTYNGILKMYSECDSMDDAFSVFSNMTER--------DLTSWDTM 482 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~----G~~pd---~~tynaLI~ay~k~G~l~eA~~lf~~M~~~--------d~~tyn~L 482 (773)
..+...|++..+...+...... +.... ...+..+...|...|+++.|...+...... ...++..+
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 5666777777777777665542 11111 234455566777778888887777765421 23455556
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC--CcchhhhHH
Q 004114 483 ITGFAKNGLGEDAVDIFSQFKQA--GLKPD----DQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP--SMKHYVSIV 554 (773)
Q Consensus 483 I~ay~~~G~~deAl~Lf~eM~~~--Gv~Pd----~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P--d~~tyn~LI 554 (773)
...+...+...++...+.+.... ..... ...+..+...+...|+.++|...+....+...-.+ ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 66677777777777777665432 11111 12344455566677788887777665432211001 122344566
Q ss_pred HHHHhCCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 004114 555 DMLGSTGYLDEALEFIEKM-------PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 555 ~~y~r~G~l~eA~~lf~~M-------~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el 608 (773)
.+|...|++++|.+.++.. +..|+ ..+|..+-.++...|++++|.+.++...++
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6777788888777777654 33333 345666667777788888777777766554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=1.4e-05 Score=78.58 Aligned_cols=220 Identities=10% Similarity=-0.006 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 004114 391 VKEAIEVLGLLEKQCI-SV--DLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSV 467 (773)
Q Consensus 391 ~~eAl~lf~~M~~~Gv-~P--d~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~l 467 (773)
.+.|+.-+.+.+..-. .+ ...+|..+-.++.+.|++++|...|...++.. +-+..+|..+-.+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4456666666665422 11 12356666778889999999999999999874 33678899999999999999999999
Q ss_pred HHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCC
Q 004114 468 FSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIV 544 (773)
Q Consensus 468 f~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~ 544 (773)
|+++.+ | +..+|..+..+|...|++++|+..|++..+... .+......+..++.+.+..+.+..+...... ..
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SD 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SC
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cc
Confidence 998874 3 567888899999999999999999999887532 2344444444444555555544444444432 22
Q ss_pred CCcchhhhHHHHHHhCCCHHHHH-HHHHhC----CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 545 PSMKHYVSIVDMLGSTGYLDEAL-EFIEKM----PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 545 Pd~~tyn~LI~~y~r~G~l~eA~-~lf~~M----~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
+....+. ++..+...-...... ...... ...|+ ..+|..|-..+...|+++.|...++......|++...+
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 2322222 233332222222222 222222 11222 34677788889999999999999999999999875433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=7.9e-06 Score=84.75 Aligned_cols=197 Identities=8% Similarity=0.089 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHhhc---CCHhHHHHHHHHH
Q 004114 411 PTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECD-SMDDAFSVFSNMTE---RDLTSWDTMITGF 486 (773)
Q Consensus 411 ~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G-~l~eA~~lf~~M~~---~d~~tyn~LI~ay 486 (773)
..|+.+-..+.+.+..++|+.+++.+++.. +-+..+|+....++.+.| ++++|+..++...+ .+..+|..+-..+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 355556566778889999999999999975 336778899888888876 59999999998763 4788999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCC-CcchhhhHHHHHHhCCC---
Q 004114 487 AKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVP-SMKHYVSIVDMLGSTGY--- 562 (773)
Q Consensus 487 ~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~P-d~~tyn~LI~~y~r~G~--- 562 (773)
.+.|++++|++.|+++.+..- -+...|..+...+.+.|++++|+..++.+.+. .| +...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccch
Confidence 999999999999999998532 24778999999999999999999999998764 34 45677777666766665
Q ss_pred ---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 563 ---LDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 563 ---l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
+++|.+.+... .+.| +...|..+...+. ....+++..+++.+.++.|...
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~ 253 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHS 253 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCC
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcC
Confidence 67888887765 4445 5777877766554 4456888899999999988764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.37 E-value=3e-06 Score=87.76 Aligned_cols=224 Identities=7% Similarity=-0.062 Sum_probs=166.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCCHHHHHH-HHHHHHhCCCh
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAK--ALEEAKAVHEHVERLLSPLRVSTYNG-ILKMYSECDSM 461 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g--~le~A~~l~~~m~k~G~~pd~~tyna-LI~ay~k~G~l 461 (773)
+...|.+++|+.++++..+.. +-+...|..+..++...+ ++++|...+..+++... .....+.. +..++...+..
T Consensus 83 ~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~ 160 (334)
T d1dcea1 83 EESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAP 160 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhcccc
Confidence 334556888999999988763 225566776666666655 58999999999988743 34555544 44677778999
Q ss_pred HHHHHHHHHhhcC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 004114 462 DDAFSVFSNMTER---DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMS 538 (773)
Q Consensus 462 ~eA~~lf~~M~~~---d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~ 538 (773)
++|+..++.+.+. +..+|+.+...+.+.|++++|...+.+.... .|+. ..++..+...+..+++...+....
T Consensus 161 ~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l 235 (334)
T d1dcea1 161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWL 235 (334)
T ss_dssp HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHH
Confidence 9999999988753 7788999999999999998887766554432 1222 223344556677778887777765
Q ss_pred HhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 539 KDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 539 ~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
.. -++....+..+...+...++.++|.+.+.+. ...|+ ..+|..+..++...|+.++|...++.+.+++|.+...|
T Consensus 236 ~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 236 LG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp HS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred Hh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence 53 3456677888888999999999999999876 44453 57788888899999999999999999999999876554
Q ss_pred H
Q 004114 617 S 617 (773)
Q Consensus 617 ~ 617 (773)
.
T Consensus 314 ~ 314 (334)
T d1dcea1 314 D 314 (334)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=6e-05 Score=75.51 Aligned_cols=227 Identities=11% Similarity=-0.017 Sum_probs=165.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCC----HHHHHHHH
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVD----LPTFSQLMQACGDAKALEEAKAVHEHVERLLS-PLR----VSTYNGIL 452 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd----~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~-~pd----~~tynaLI 452 (773)
...+...|++++|++++++.++.--.-+ ...+..+..++...|++++|...+...++... .++ ..++..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3456789999999999999887532111 24566677888899999999999998876421 112 34566677
Q ss_pred HHHHhCCChHHHHHHHHHhhc-------C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHH
Q 004114 453 KMYSECDSMDDAFSVFSNMTE-------R----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAG----LKPDDQIFIGV 517 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~~M~~-------~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~G----v~Pd~~Ty~~L 517 (773)
..|...|++..|...+.+... + ....+..+...+...|++++|...+.+..... ......++..+
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 889999999999998886542 1 12356667788899999999999999887642 22334566666
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhcCCCCC-----cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-----CHHHHHHHH
Q 004114 518 FSACSALGDVVEGMLHFESMSKDYGIVPS-----MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-----DVDVWEKLM 586 (773)
Q Consensus 518 L~a~~~~G~~deA~~if~~M~~~~Gi~Pd-----~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-----d~~ty~~LI 586 (773)
...+...+...++...+........-... ...+..+...+...|+.++|.+.+... ...| ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 77788889999998888766543222221 234556677888999999999999877 2221 245667788
Q ss_pred HHHHHcCChhHHHHHHHHHHHc
Q 004114 587 NLCRMHGNLELGDRCAEIVEQL 608 (773)
Q Consensus 587 ~a~~~~G~~e~A~~~~e~m~el 608 (773)
.++...|+++.|...++.+..+
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~ 280 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNEN 280 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999998877643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=4.2e-05 Score=74.96 Aligned_cols=191 Identities=12% Similarity=-0.073 Sum_probs=131.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
+-.+|.+.|++++|++.|++.++.. +-+..+|..+-.++.+.|++++|...|+.+++... -+..++..+..+|.+.|+
T Consensus 43 ~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~ 120 (259)
T d1xnfa_ 43 RGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGR 120 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHHHHHhh
Confidence 5677888999999999999998753 23667899999999999999999999999999753 356688889999999999
Q ss_pred hHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 004114 461 MDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESM 537 (773)
Q Consensus 461 l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M 537 (773)
.++|+..|+...+ | +...+..+..++.+.+..+.+..+........-.+.. +. ++..+ .+...... .+...
T Consensus 121 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~--~~~~~~~~-~~~~~ 194 (259)
T d1xnfa_ 121 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG--WN-IVEFY--LGNISEQT-LMERL 194 (259)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH--HH-HHHHH--TTSSCHHH-HHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhh--hh-HHHHH--HHHHHHHH-HHHHH
Confidence 9999999998764 3 4555555556666677777777777666664333222 21 12222 22221111 11111
Q ss_pred HHhc----CCCCC-cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCCH
Q 004114 538 SKDY----GIVPS-MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPDV 579 (773)
Q Consensus 538 ~~~~----Gi~Pd-~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd~ 579 (773)
.... .+.|+ ..+|..|-..|...|++++|.+.|+.. ...|+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 195 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 1110 01122 346667888999999999999999976 556754
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.04 E-value=5.3e-05 Score=76.90 Aligned_cols=127 Identities=11% Similarity=-0.034 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc----C-----CHhHHHHHHHHHHH-cCChHHHHHHHHHHHH----CCCCCC-H
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE----R-----DLTSWDTMITGFAK-NGLGEDAVDIFSQFKQ----AGLKPD-D 511 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~----~-----d~~tyn~LI~ay~~-~G~~deAl~Lf~eM~~----~Gv~Pd-~ 511 (773)
+|..+..+|.+.|++++|...+++..+ . ...++..+...|.. .|++++|++.|.+..+ .+-.+. .
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 344444555555555555555543321 0 12234444444433 4666666666655432 111111 2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCc-----chhhhHHHHHHhCCCHHHHHHHHHhC
Q 004114 512 QIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSM-----KHYVSIVDMLGSTGYLDEALEFIEKM 573 (773)
Q Consensus 512 ~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~-----~tyn~LI~~y~r~G~l~eA~~lf~~M 573 (773)
.++..+...+...|++++|..+|+++.+..--.+.. ..+..++..+...|+++.|...|++.
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~ 225 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 245556666666677777776666654431111110 11223334455667777777777666
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.96 E-value=0.00024 Score=71.88 Aligned_cols=190 Identities=11% Similarity=0.021 Sum_probs=129.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCC-CCHHHHHH
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQ----CISVD-LPTFSQLMQACGDAKALEEAKAVHEHVERL----LSP-LRVSTYNG 450 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~----Gv~Pd-~~ty~~LL~a~~~~g~le~A~~l~~~m~k~----G~~-pd~~tyna 450 (773)
+...|...+++++|++.|.+..+. +-.++ ..+|..+..+|.+.|++++|.+.+...++. |.. ....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 455677777777777777776542 21222 347788888899999999999999987664 211 11445666
Q ss_pred HHHHHHh-CCChHHHHHHHHHhhc-----C----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CH-HHH
Q 004114 451 ILKMYSE-CDSMDDAFSVFSNMTE-----R----DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP-----DD-QIF 514 (773)
Q Consensus 451 LI~ay~k-~G~l~eA~~lf~~M~~-----~----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P-----d~-~Ty 514 (773)
|..+|-. .|++++|+..|.+..+ . -..+|..+...|...|++++|+.+|++.......- .. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 6667744 6999999999987652 1 13468889999999999999999999987753221 11 123
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC---c---chhhhHHHHHHh--CCCHHHHHHHHHhC
Q 004114 515 IGVFSACSALGDVVEGMLHFESMSKDYGIVPS---M---KHYVSIVDMLGS--TGYLDEALEFIEKM 573 (773)
Q Consensus 515 ~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd---~---~tyn~LI~~y~r--~G~l~eA~~lf~~M 573 (773)
..++..+...++++.|...++...+ +.|. . .....|+.++-. .+.+++|...|+.+
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~---~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH---hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3444566678999999999988743 3332 1 233455666554 35688898888877
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.00027 Score=67.52 Aligned_cols=86 Identities=6% Similarity=-0.081 Sum_probs=70.0
Q ss_pred HHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 004114 453 KMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGML 532 (773)
Q Consensus 453 ~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~ 532 (773)
..+...|+++.|++.|+++..++..+|..+-.+|...|++++|++.|++.++..- -+...|..+-.++.+.|+.++|..
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccHHHHHH
Confidence 4456778999999999988888888888888999999999999999998887532 245677888888889999999988
Q ss_pred HHHHHHH
Q 004114 533 HFESMSK 539 (773)
Q Consensus 533 if~~M~~ 539 (773)
.|++...
T Consensus 92 ~~~kAl~ 98 (192)
T d1hh8a_ 92 DLKEALI 98 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.00064 Score=64.71 Aligned_cols=123 Identities=11% Similarity=-0.036 Sum_probs=98.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCh
Q 004114 382 LDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSM 461 (773)
Q Consensus 382 I~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l 461 (773)
-..+...|++++|++.|.++ ..|+..+|..+-.++...|++++|.+.|++.++.. +-+...|..+-.+|.+.|+.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 34567889999999998764 35678888889999999999999999999999875 33678899999999999999
Q ss_pred HHHHHHHHHhhc---C----------------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004114 462 DDAFSVFSNMTE---R----------------DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKP 509 (773)
Q Consensus 462 ~eA~~lf~~M~~---~----------------d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~P 509 (773)
++|++.|++... . ...++..+-.+|.+.|++++|++.|.+.......|
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999987542 1 12345567778888999999999988877654443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.41 E-value=0.00041 Score=65.01 Aligned_cols=101 Identities=9% Similarity=-0.120 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 004114 509 PDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM-PMEPD-VDVWEKLM 586 (773)
Q Consensus 509 Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~Pd-~~ty~~LI 586 (773)
|+...+.-.-..+.+.|++++|+.+|.+..+. -+-+...|..+..+|.+.|++++|...|+.. .+.|+ +.+|..+-
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 44555555556666666666666666655443 1224455666666666677777776666655 44453 55666666
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCC
Q 004114 587 NLCRMHGNLELGDRCAEIVEQLDPS 611 (773)
Q Consensus 587 ~a~~~~G~~e~A~~~~e~m~el~p~ 611 (773)
.+|...|+++.|...++.+.+++|+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 6777777777777777766666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.34 E-value=0.0015 Score=61.01 Aligned_cols=89 Identities=11% Similarity=-0.003 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHc
Q 004114 413 FSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKN 489 (773)
Q Consensus 413 y~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~ 489 (773)
+...-..+.+.|++++|+..|...++.. +-+..+|..+..+|.+.|++++|+..|++..+ | ++.+|..+..+|...
T Consensus 7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l 85 (201)
T d2c2la1 7 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 3333344444445555555554444432 22344444444444444444444444444432 2 333444444444444
Q ss_pred CChHHHHHHHHHH
Q 004114 490 GLGEDAVDIFSQF 502 (773)
Q Consensus 490 G~~deAl~Lf~eM 502 (773)
|++++|+..|++.
T Consensus 86 ~~~~~A~~~~~~a 98 (201)
T d2c2la1 86 ESYDEAIANLQRA 98 (201)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.0016 Score=56.59 Aligned_cols=82 Identities=10% Similarity=0.031 Sum_probs=35.1
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHH
Q 004114 421 GDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVD 497 (773)
Q Consensus 421 ~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~ 497 (773)
.+.|++++|..+|...++.. +-+...|..+-.+|.+.|++++|+..|+...+ .+...|..+..+|...|++++|+.
T Consensus 14 ~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~ 92 (117)
T d1elwa_ 14 LSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKR 92 (117)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHH
Confidence 33444444444444444432 22333444444444444444444444443331 133444444444444444444444
Q ss_pred HHHHHH
Q 004114 498 IFSQFK 503 (773)
Q Consensus 498 Lf~eM~ 503 (773)
.|++..
T Consensus 93 ~~~~a~ 98 (117)
T d1elwa_ 93 TYEEGL 98 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.28 E-value=0.0002 Score=73.43 Aligned_cols=222 Identities=10% Similarity=0.017 Sum_probs=139.9
Q ss_pred HHHHcCC-HHHHHHHHHHHHHCCCCCCHHH-HHH---HHHHHHh-------cCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004114 384 GLVKEGK-VKEAIEVLGLLEKQCISVDLPT-FSQ---LMQACGD-------AKALEEAKAVHEHVERLLSPLRVSTYNGI 451 (773)
Q Consensus 384 a~~~~G~-~~eAl~lf~~M~~~Gv~Pd~~t-y~~---LL~a~~~-------~g~le~A~~l~~~m~k~G~~pd~~tynaL 451 (773)
.+.+.+. .++|++++.+.++. .|+..+ |+. ++..+.. .+.+++|+.+++..++.. +-+...|..+
T Consensus 37 ~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~ 113 (334)
T d1dcea1 37 QKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHR 113 (334)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHh
Confidence 3344444 47899999988875 566443 322 2333333 345788888888888764 3366677777
Q ss_pred HHHHHhCC--ChHHHHHHHHHhhc---CCHhHHHHHH-HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 004114 452 LKMYSECD--SMDDAFSVFSNMTE---RDLTSWDTMI-TGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALG 525 (773)
Q Consensus 452 I~ay~k~G--~l~eA~~lf~~M~~---~d~~tyn~LI-~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G 525 (773)
..++...+ +.++|+..+.++.+ ++...|..++ ..+...+..++|+..++++.+.... +...|..+-.++...|
T Consensus 114 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~ 192 (334)
T d1dcea1 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLH 192 (334)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHS
T ss_pred hHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhc
Confidence 77777665 47899999988763 3566665544 5666789999999999888775432 4667788888888888
Q ss_pred ChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 004114 526 DVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKM--PMEPDVDVWEKLMNLCRMHGNLELGDRCAE 603 (773)
Q Consensus 526 ~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M--~~~Pd~~ty~~LI~a~~~~G~~e~A~~~~e 603 (773)
++++|...+....+. .|. ...++..+...+..++|...+... ...++...+..+...+...++.+.|...+.
T Consensus 193 ~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 266 (334)
T d1dcea1 193 PQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQ 266 (334)
T ss_dssp CCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 887775544433221 111 112333445556666666665544 112234455566667777777777777777
Q ss_pred HHHHcCCCCchH
Q 004114 604 IVEQLDPSRLNE 615 (773)
Q Consensus 604 ~m~el~p~~~~~ 615 (773)
...+.+|.+..+
T Consensus 267 ~~~~~~p~~~~~ 278 (334)
T d1dcea1 267 ELEPENKWCLLT 278 (334)
T ss_dssp HHCTTCHHHHHH
T ss_pred HHHhhCchHHHH
Confidence 666666655433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.0021 Score=58.54 Aligned_cols=84 Identities=14% Similarity=0.064 Sum_probs=34.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHH
Q 004114 420 CGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAV 496 (773)
Q Consensus 420 ~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl 496 (773)
|.+.|++++|...|.+.++.. +-+...|..+..+|.+.|++++|+..|++..+ | +..+|..+..+|...|++++|+
T Consensus 20 ~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~ 98 (159)
T d1a17a_ 20 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 98 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHH
Confidence 334444444444444444432 12333444444444444444444444443331 1 3334444444444444444444
Q ss_pred HHHHHHHH
Q 004114 497 DIFSQFKQ 504 (773)
Q Consensus 497 ~Lf~eM~~ 504 (773)
..|++...
T Consensus 99 ~~~~~a~~ 106 (159)
T d1a17a_ 99 RDYETVVK 106 (159)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.004 Score=53.90 Aligned_cols=92 Identities=11% Similarity=0.052 Sum_probs=81.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Q 004114 381 QLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDS 460 (773)
Q Consensus 381 LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~ 460 (773)
.-..+.+.|++++|+.+|.+.++.. +-+...|..+-.++...|++++|+..+...++.. +.+...|..+..+|.+.|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 4567889999999999999998863 3467789999999999999999999999999985 4578899999999999999
Q ss_pred hHHHHHHHHHhhcC
Q 004114 461 MDDAFSVFSNMTER 474 (773)
Q Consensus 461 l~eA~~lf~~M~~~ 474 (773)
+++|+..|++..+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.0046 Score=56.18 Aligned_cols=84 Identities=12% Similarity=0.138 Sum_probs=42.3
Q ss_pred HHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCChHH
Q 004114 454 MYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPD-DQIFIGVFSACSALGDVVE 529 (773)
Q Consensus 454 ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd-~~Ty~~LL~a~~~~G~~de 529 (773)
.|.+.|++++|+..|.+..+ | +...|..+..+|...|++++|+..|++.++.. |+ ..+|..+..++...|++++
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHHHHcCCHHH
Confidence 34455555555555554442 2 44455555555555555555555555555432 22 2345555555555555555
Q ss_pred HHHHHHHHHH
Q 004114 530 GMLHFESMSK 539 (773)
Q Consensus 530 A~~if~~M~~ 539 (773)
|...++...+
T Consensus 97 A~~~~~~a~~ 106 (159)
T d1a17a_ 97 ALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.0023 Score=56.37 Aligned_cols=99 Identities=8% Similarity=-0.033 Sum_probs=69.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCh---HHHHHHHHHhhcCC-----HhHHHHHHHH
Q 004114 414 SQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSM---DDAFSVFSNMTERD-----LTSWDTMITG 485 (773)
Q Consensus 414 ~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l---~eA~~lf~~M~~~d-----~~tyn~LI~a 485 (773)
..|++.+...+++++|.+.|+..++.+ +.+..++..+..++.+.++. ++|+.+|+++.+.+ ..+|..|-.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456777777788888888888888765 33667777777777765544 45888888776432 2356677788
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 004114 486 FAKNGLGEDAVDIFSQFKQAGLKPDDQIFI 515 (773)
Q Consensus 486 y~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~ 515 (773)
|.+.|++++|++.|++.++ +.|+..-..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~ 109 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAK 109 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHH
Confidence 8888888888888888877 457654333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.0011 Score=58.64 Aligned_cols=100 Identities=16% Similarity=0.057 Sum_probs=74.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCH---HHHHHHHHhC-CCCCC---HHHHHHHHH
Q 004114 515 IGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYL---DEALEFIEKM-PMEPD---VDVWEKLMN 587 (773)
Q Consensus 515 ~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l---~eA~~lf~~M-~~~Pd---~~ty~~LI~ 587 (773)
..|+..+...+++++|++.|+...+. -+.+..++..+..+|.+.++. ++|.++|+++ ...|+ ..+|..|-.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35677777888888888888877664 233567777777778776554 4688888876 33443 236777888
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 588 LCRMHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 588 a~~~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
+|.+.|++++|.+.++.+.+++|++..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~ 109 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAK 109 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHH
Confidence 99999999999999999999999986443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.88 E-value=0.0035 Score=53.86 Aligned_cols=86 Identities=10% Similarity=0.052 Sum_probs=37.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChH
Q 004114 383 DGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMD 462 (773)
Q Consensus 383 ~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~ 462 (773)
..+.+.|++++|+..|++..+.. +-+..+|..+-.++.+.+++++|...+...++.. +-+..++..|...|.+.|+++
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHH
Confidence 34444444444444444444431 1123344444444444444444444444444432 123344444444444444444
Q ss_pred HHHHHHHH
Q 004114 463 DAFSVFSN 470 (773)
Q Consensus 463 eA~~lf~~ 470 (773)
+|++.|++
T Consensus 102 ~A~~~l~~ 109 (112)
T d1hxia_ 102 AALASLRA 109 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.81 E-value=0.0064 Score=57.11 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=74.3
Q ss_pred hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 004114 375 NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKAL-EEAKAVHEHVERLLSPLRVSTYNGILK 453 (773)
Q Consensus 375 ~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~l-e~A~~l~~~m~k~G~~pd~~tynaLI~ 453 (773)
|......-......|++++|.+.|.+.+.. .+... +..+....-. ..+..+-.. ....+..+..
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~-----l~~~~~~~w~~~~r~~l~~~--------~~~a~~~la~ 75 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALRE--WRGPV-----LDDLRDFQFVEPFATALVED--------KVLAHTAKAE 75 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSST-----TGGGTTSTTHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Ccccc-----cccCcchHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 444444556777888888888888887653 11110 0000000001 111111111 2345666777
Q ss_pred HHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHH
Q 004114 454 MYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQ-----AGLKPDDQI 513 (773)
Q Consensus 454 ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~-----~Gv~Pd~~T 513 (773)
++.+.|++++|+..++++.+ | +...|..++.+|.+.|+.++|++.|+++.. .|+.|...|
T Consensus 76 ~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 76 AEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 78888888888888877763 3 677788888888888888888888877633 577777654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.81 E-value=0.0045 Score=53.15 Aligned_cols=87 Identities=11% Similarity=0.035 Sum_probs=76.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCCh
Q 004114 416 LMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLG 492 (773)
Q Consensus 416 LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~ 492 (773)
+-..+.+.|++++|...+++.++... -+..+|..|..+|.+.|++++|+..|++..+ | +..+|..|...|...|++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 34457789999999999999999753 3688999999999999999999999998773 4 688999999999999999
Q ss_pred HHHHHHHHHHH
Q 004114 493 EDAVDIFSQFK 503 (773)
Q Consensus 493 deAl~Lf~eM~ 503 (773)
++|++.|++.+
T Consensus 101 ~~A~~~l~~~l 111 (112)
T d1hxia_ 101 NAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998864
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.0051 Score=56.94 Aligned_cols=119 Identities=13% Similarity=0.014 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDML 557 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y 557 (773)
.+...-..|.+.|++++|+..|.+.+..- |. ..+..+.-......+. ..+|+.|..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~------------~~~~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EY------------ESSFSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TT------------CCCCCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hh------------ccccchHHHhhhchhH--------HHHHHHHHHHH
Confidence 44555567788888888888888776521 10 0000111111111111 12566788889
Q ss_pred HhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHH
Q 004114 558 GSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSK 618 (773)
Q Consensus 558 ~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~ 618 (773)
.+.|++++|...++.. .+.| ++..|..+..++...|+++.|...++...+++|++..+...
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~ 135 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 135 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999988776 4445 67888889999999999999999999999999988655443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.54 E-value=0.52 Score=48.06 Aligned_cols=226 Identities=13% Similarity=0.092 Sum_probs=118.9
Q ss_pred HHHHHHHhcCChhHHHHhhh----hccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004114 355 QVLNNCKHEDDFAEASRSSQ----NNGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAK 430 (773)
Q Consensus 355 ~LI~~y~k~g~~~~A~~v~~----~~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~ 430 (773)
.++..|.+.+++..|.+++. ...+..++.++.+......| .+.......+......++..|-..|..++..
T Consensus 45 rl~~~~v~l~~~~~avd~~~k~~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li 119 (336)
T d1b89a_ 45 RLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELI 119 (336)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHcCCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHH
Confidence 45555556666655555431 11122344555555444332 1222334456666677788888888888888
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-----------CHhHHHHHHHHHHHcCChHHHHHHH
Q 004114 431 AVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTER-----------DLTSWDTMITGFAKNGLGEDAVDIF 499 (773)
Q Consensus 431 ~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~-----------d~~tyn~LI~ay~~~G~~deAl~Lf 499 (773)
.+++..... -..+...++-|+.+|+|.+. ++-.+.+.....+ ...-|.-++-.|.+.|.+++|+.+.
T Consensus 120 ~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~ 197 (336)
T d1b89a_ 120 TMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 197 (336)
T ss_dssp HHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH
Confidence 777766532 24566778888888888643 3333333332111 1122455555555555555555443
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCC----
Q 004114 500 SQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPM---- 575 (773)
Q Consensus 500 ~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~---- 575 (773)
... .+++.-....+..+.+..+.+...++....... .| ...+.|+......-+..++.++|++-+.
T Consensus 198 ---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~---~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li 267 (336)
T d1b89a_ 198 ---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLV 267 (336)
T ss_dssp ---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTT
T ss_pred ---HHc--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc---CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHH
Confidence 111 122222333455566777776665555544332 23 3345555556666666666666665421
Q ss_pred ---------CCCHHHHHHHHHHHHHcCChhH
Q 004114 576 ---------EPDVDVWEKLMNLCRMHGNLEL 597 (773)
Q Consensus 576 ---------~Pd~~ty~~LI~a~~~~G~~e~ 597 (773)
.-+..+.++|...|....+++.
T Consensus 268 ~p~Le~v~~~n~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 268 KPYLRSVQNHNNKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcChHHHHHHHHHHHhCcchhHH
Confidence 1234566666667666666543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.40 E-value=0.011 Score=53.55 Aligned_cols=120 Identities=13% Similarity=0.049 Sum_probs=84.7
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHH
Q 004114 476 LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVD 555 (773)
Q Consensus 476 ~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~ 555 (773)
...+...-..+.+.|++.+|+..|.+.+..- |.. ....-.........+ ...+|+.+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~~~~~~~~~~~~--------~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWDDQILLDKKKNI--------EISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCCCHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhhhHHHHHhhhhH--------HHHHHhhHHH
Confidence 3456667778888999999999988877531 100 000000000001111 1236777888
Q ss_pred HHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHH
Q 004114 556 MLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEK 616 (773)
Q Consensus 556 ~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y 616 (773)
+|.+.|++++|++.++.. .+.| ++.+|..+..++...|+++.|...++...+++|++..+.
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~ 138 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 138 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 899999999999999876 4445 688999999999999999999999999999999986543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.03 Score=51.37 Aligned_cols=64 Identities=11% Similarity=-0.015 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 004114 447 TYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQ 512 (773)
Q Consensus 447 tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~ 512 (773)
+|+.+..+|.+.|++++|+..++...+ | ++.+|..+..+|...|++++|+..|++..+. .|+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~ 130 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNK 130 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCH
Confidence 566677778888888888888876653 3 6777777888888888888888888887763 45433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.27 E-value=0.027 Score=52.59 Aligned_cols=119 Identities=10% Similarity=0.075 Sum_probs=81.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHhHHHHHHHHHHHcCChHHH
Q 004114 418 QACGDAKALEEAKAVHEHVERL--LSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTERDLTSWDTMITGFAKNGLGEDA 495 (773)
Q Consensus 418 ~a~~~~g~le~A~~l~~~m~k~--G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d~~tyn~LI~ay~~~G~~deA 495 (773)
......|++++|.+.|...++. |.... ....-+-+...-..+...-+..+..+...+...|++++|
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~------------~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A 86 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLD------------DLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 86 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTG------------GGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccc------------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence 3567788999999998888774 21100 001111122222233333456788889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH----hcCCCCCcch
Q 004114 496 VDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK----DYGIVPSMKH 549 (773)
Q Consensus 496 l~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~----~~Gi~Pd~~t 549 (773)
+..++++.... .-+...|..++.++...|+.++|++.|+.+.+ ..|+.|...+
T Consensus 87 l~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 87 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 99999998753 23567899999999999999999998888743 3577776544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.21 E-value=0.047 Score=49.06 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 004114 446 STYNGILKMYSECDSMDDAFSVFSNMTE--R-DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQI 513 (773)
Q Consensus 446 ~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~T 513 (773)
.+|+.+..+|.+.|++++|+..++...+ | ++.+|..+..+|...|++++|+..|++..+. .|+...
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~ 136 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLD 136 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH
Confidence 3566677777777777777777776552 3 6667777777777777777777777776663 354433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.09 E-value=0.14 Score=52.65 Aligned_cols=221 Identities=14% Similarity=0.139 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHhhhh-ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004114 349 NGMMASQVLNNCKHEDDFAEASRSSQN-NGTLEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALE 427 (773)
Q Consensus 349 d~~~~n~LI~~y~k~g~~~~A~~v~~~-~~~~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le 427 (773)
+..--..+.+.|-+.|.++.|..++.. ..+..++..|.+.+++..|++++.+. -+..+|..++.+|.+.....
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~ 86 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 86 (336)
T ss_dssp ----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCCHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHH
Confidence 333334667778888999888887543 44445888889999999998887654 15668888888888776665
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh---cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 428 EAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT---ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 428 ~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~---~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
.| .+.......+......++..|-..|..++...+++... ..+...++-++..|++.+ .++.++. ++.
T Consensus 87 la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~---l~~ 157 (336)
T d1b89a_ 87 LA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREH---LEL 157 (336)
T ss_dssp HH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHH---HHH
T ss_pred HH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHH---HHh
Confidence 43 22233344566666778888988999999998888654 346677888888888764 3333333 333
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhCCCHHHHHHHHHhCCCCCCHHHHHH
Q 004114 505 AGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGSTGYLDEALEFIEKMPMEPDVDVWEK 584 (773)
Q Consensus 505 ~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r~G~l~eA~~lf~~M~~~Pd~~ty~~ 584 (773)
..-..| .--++..|-..+.+.++. -.|.+.|.+++|..++-+-+ +++.-...
T Consensus 158 ~s~~y~---~~k~~~~c~~~~l~~elv-----------------------~Ly~~~~~~~~A~~~~i~~~--~~~~~~~~ 209 (336)
T d1b89a_ 158 FWSRVN---IPKVLRAAEQAHLWAELV-----------------------FLYDKYEEYDNAIITMMNHP--TDAWKEGQ 209 (336)
T ss_dssp HSTTSC---HHHHHHHHHTTTCHHHHH-----------------------HHHHHTTCHHHHHHHHHHST--TTTCCHHH
T ss_pred ccccCC---HHHHHHHHHHcCChHHHH-----------------------HHHHhcCCHHHHHHHHHHcc--hhhhhHHH
Confidence 211222 223455555555554444 34445555555555443321 22222233
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 004114 585 LMNLCRMHGNLELGDRCAEIVEQLDPSR 612 (773)
Q Consensus 585 LI~a~~~~G~~e~A~~~~e~m~el~p~~ 612 (773)
.+..+.+..+.+...++.....+..|+.
T Consensus 210 f~e~~~k~~N~e~~~~~i~~yL~~~p~~ 237 (336)
T d1b89a_ 210 FKDIITKVANVELYYRAIQFYLEFKPLL 237 (336)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHccCChHHHHHHHHHHHHcCHHH
Confidence 4555566666666655555555545543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.01 E-value=0.031 Score=51.12 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=56.3
Q ss_pred hhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHcC
Q 004114 549 HYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKAG 620 (773)
Q Consensus 549 tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~aG 620 (773)
.|+.+..+|.+.|++++|...++.. .+.| +...|..+..++...|++++|...++.+.+++|++..+....+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~ 139 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIF 139 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4666777888899999999888876 3333 5778888888999999999999999999999998865444333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.038 Score=48.10 Aligned_cols=85 Identities=13% Similarity=0.182 Sum_probs=43.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-C-------HhHHHHHHHHHHH
Q 004114 419 ACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMTE--R-D-------LTSWDTMITGFAK 488 (773)
Q Consensus 419 a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~~--~-d-------~~tyn~LI~ay~~ 488 (773)
.+.+.|++++|...|...++.. +.+..++..+-.+|.+.|++++|+..++++.+ | + ..+|..+-..+..
T Consensus 13 ~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~ 91 (128)
T d1elra_ 13 DAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK 91 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555543 22444555555555555555555555555432 1 1 1244455555566
Q ss_pred cCChHHHHHHHHHHHH
Q 004114 489 NGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 489 ~G~~deAl~Lf~eM~~ 504 (773)
.+++++|++.|.+-..
T Consensus 92 ~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 92 EEKYKDAIHFYNKSLA 107 (128)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 6666666666665544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.95 E-value=0.08 Score=48.03 Aligned_cols=73 Identities=5% Similarity=-0.003 Sum_probs=60.0
Q ss_pred cchhhhHHHHHHhCCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHHHc
Q 004114 547 MKHYVSIVDMLGSTGYLDEALEFIEKM-PMEP-DVDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKSKA 619 (773)
Q Consensus 547 ~~tyn~LI~~y~r~G~l~eA~~lf~~M-~~~P-d~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~~a 619 (773)
...|..+..+|.+.|++++|...++.. .+.| +...|..+-.++...|+++.|...++...+++|.+..+....
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l 151 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 151 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 345667778899999999999998877 5555 477899999999999999999999999999999986554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.1 Score=45.18 Aligned_cols=92 Identities=10% Similarity=0.100 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCC----HHHHHHHHH
Q 004114 380 EQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLL--SPLR----VSTYNGILK 453 (773)
Q Consensus 380 ~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G--~~pd----~~tynaLI~ 453 (773)
++=..|.+.|++++|+..|.+.++.. +-+..+|..+-.++.+.|++++|...+..+++.. .... ..+|..+-.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999874 3368889999999999999999999999988742 1111 346777888
Q ss_pred HHHhCCChHHHHHHHHHhh
Q 004114 454 MYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 454 ay~k~G~l~eA~~lf~~M~ 472 (773)
.+...+++++|+..|....
T Consensus 88 ~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 8999999999999998754
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.70 E-value=0.065 Score=48.66 Aligned_cols=61 Identities=8% Similarity=-0.029 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSK 539 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~ 539 (773)
.|..+-.+|.+.|++++|+..+.+.++.. .-+..+|..+-.++...|++++|+..|....+
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 44445555555555555555555555432 11233455555555555555555555554433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=95.33 E-value=0.1 Score=47.44 Aligned_cols=113 Identities=12% Similarity=0.026 Sum_probs=73.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 004114 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAK--ALEEAKAVHEHVERLLSPLRVSTYNGILKMYS 456 (773)
Q Consensus 379 ~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g--~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~ 456 (773)
.+.-..+.+.|++.+|+..|.+.... +-..- ..+.. .....+ ...+|+.+-.+|.
T Consensus 19 ~e~G~~~~~~~~~~~A~~~Y~~al~~---------------~~~~~~~~~~~~-~~~~~~-------~~~~~~Nla~~~~ 75 (168)
T d1kt1a1 19 KEKGTVYFKGGKYVQAVIQYGKIVSW---------------LEMEYGLSEKES-KASESF-------LLAAFLNLAMCYL 75 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---------------HTTCCSCCHHHH-HHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHhhccchhhh-hhcchh-------HHHHHHhHHHHHH
Confidence 34667788888888888888765431 00000 01111 111111 1235666777888
Q ss_pred hCCChHHHHHHHHHhhc---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 004114 457 ECDSMDDAFSVFSNMTE---RDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIG 516 (773)
Q Consensus 457 k~G~l~eA~~lf~~M~~---~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~ 516 (773)
+.|++++|+..++...+ .++.+|..+..+|...|++++|+..|.+.+. +.|+......
T Consensus 76 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~ 136 (168)
T d1kt1a1 76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARL 136 (168)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHH
T ss_pred HhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHH
Confidence 88888888888887763 3677888888888888999999998888877 3455443333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=94.84 E-value=0.013 Score=58.54 Aligned_cols=49 Identities=10% Similarity=0.064 Sum_probs=21.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 004114 423 AKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSECDSMDDAFSVFSNMT 472 (773)
Q Consensus 423 ~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k~G~l~eA~~lf~~M~ 472 (773)
.|++++|+..+++.++.. +-+...+..|...|+..|++++|.+.|+...
T Consensus 9 ~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~ 57 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 57 (264)
T ss_dssp TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444444444432 2234444444444444444444444444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=94.80 E-value=1.7 Score=41.01 Aligned_cols=218 Identities=12% Similarity=-0.020 Sum_probs=139.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 004114 379 LEQLDGLVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGD----AKALEEAKAVHEHVERLLSPLRVSTYNGILKM 454 (773)
Q Consensus 379 ~~LI~a~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~----~g~le~A~~l~~~m~k~G~~pd~~tynaLI~a 454 (773)
..|-..+-+.+++++|++.|++..+.| |...+..|-..+.. ..+...|...+....+.+ +......|...
T Consensus 6 ~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~ 79 (265)
T d1ouva_ 6 VGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 79 (265)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccccc
Confidence 345556778899999999999998877 55555555555554 568899999998888776 33444455555
Q ss_pred HHh----CCChHHHHHHHHHhhcC-CHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--
Q 004114 455 YSE----CDSMDDAFSVFSNMTER-DLTSWDTMITGFAK----NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA-- 523 (773)
Q Consensus 455 y~k----~G~l~eA~~lf~~M~~~-d~~tyn~LI~ay~~----~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~-- 523 (773)
+.. ..+.+.|...++...+. .......+...+.. ......|+..+.+.... .+...+..|...+..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~ 156 (265)
T d1ouva_ 80 YYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGR 156 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTS
T ss_pred cccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCC
Confidence 543 45778888888876544 33444444444443 34466777777776654 355666666666664
Q ss_pred --CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHh----CCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 004114 524 --LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGS----TGYLDEALEFIEKMPMEPDVDVWEKLMNLCRM----HG 593 (773)
Q Consensus 524 --~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r----~G~l~eA~~lf~~M~~~Pd~~ty~~LI~a~~~----~G 593 (773)
..+...+..++....+. | +......|-.+|.. ..+.++|...|...-..-+...+..|-..|.. ..
T Consensus 157 ~~~~~~~~~~~~~~~a~~~-g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~ 232 (265)
T d1ouva_ 157 GTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTR 232 (265)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSC
T ss_pred Ccccccccchhhhhccccc-c---ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCcc
Confidence 45666777776665443 3 44455555555554 56888999988876212245555555555554 33
Q ss_pred ChhHHHHHHHHHHHcC
Q 004114 594 NLELGDRCAEIVEQLD 609 (773)
Q Consensus 594 ~~e~A~~~~e~m~el~ 609 (773)
+.+.|.+.+++..++.
T Consensus 233 n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 233 NEKQAIENFKKGCKLG 248 (265)
T ss_dssp CSTTHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCc
Confidence 6778888888777664
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=94.64 E-value=1.9 Score=40.72 Aligned_cols=210 Identities=10% Similarity=0.006 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHhhhhcc-------HHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004114 350 GMMASQVLNNCKHEDDFAEASRSSQNNG-------TLEQLDGLVK----EGKVKEAIEVLGLLEKQCISVDLPTFSQLMQ 418 (773)
Q Consensus 350 ~~~~n~LI~~y~k~g~~~~A~~v~~~~~-------~~~LI~a~~~----~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~ 418 (773)
+..+..|=..+-..++.++|.+.+.... ...|-..|.. ..+...|...+......+ +......|..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~ 78 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence 3444455556667788888888543211 1113333333 456777777777766655 2333333333
Q ss_pred HHH----hcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHhhc-CCHhHHHHHHHHHHH-
Q 004114 419 ACG----DAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE----CDSMDDAFSVFSNMTE-RDLTSWDTMITGFAK- 488 (773)
Q Consensus 419 a~~----~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k----~G~l~eA~~lf~~M~~-~d~~tyn~LI~ay~~- 488 (773)
.+. ...+.+.|...++...+.|.. .....|...+.. ......|...+..... .+..++..|...|..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~ 155 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG 155 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccC
Confidence 332 245678888888887776632 222233333332 3446666666665544 477778888887776
Q ss_pred ---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHh--
Q 004114 489 ---NGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSA----LGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGS-- 559 (773)
Q Consensus 489 ---~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~----~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r-- 559 (773)
..+...+..++....+.| +......|-..+.. ..+.++|+.+|....+. | +...+..|-.+|.+
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~-g---~~~a~~~LG~~y~~G~ 228 (265)
T d1ouva_ 156 RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYNGE 228 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHTTS
T ss_pred CCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcc-c---CHHHHHHHHHHHHcCC
Confidence 345567777777766654 34444444333333 46788888888776554 4 34455555555553
Q ss_pred --CCCHHHHHHHHHh
Q 004114 560 --TGYLDEALEFIEK 572 (773)
Q Consensus 560 --~G~l~eA~~lf~~ 572 (773)
..+.++|.+.|++
T Consensus 229 g~~~n~~~A~~~~~k 243 (265)
T d1ouva_ 229 GVTRNEKQAIENFKK 243 (265)
T ss_dssp SSSCCSTTHHHHHHH
T ss_pred CCccCHHHHHHHHHH
Confidence 2255566666654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=94.64 E-value=0.031 Score=55.59 Aligned_cols=122 Identities=12% Similarity=0.052 Sum_probs=64.0
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCCc-chhhhHHHHHHhCCCHHHH
Q 004114 488 KNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPSM-KHYVSIVDMLGSTGYLDEA 566 (773)
Q Consensus 488 ~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd~-~tyn~LI~~y~r~G~l~eA 566 (773)
+.|++++|+..|++.++.. .-|...+..|...++..|++++|...|+...+. .|+. ..+..+..++...+..+++
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHHH
Confidence 3455666666666555532 113345555556666666666666665555432 2332 2222222222222222222
Q ss_pred HHHHHhC--CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCc
Q 004114 567 LEFIEKM--PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRL 613 (773)
Q Consensus 567 ~~lf~~M--~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~ 613 (773)
..-.... ...|+ ...+......+...|+.+.|...++.+.++.|...
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 2111111 11232 33444455667888999999999999999988874
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=94.44 E-value=0.15 Score=45.46 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhc---------C-----CHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004114 446 STYNGILKMYSECDSMDDAFSVFSNMTE---------R-----DLTSWDTMITGFAKNGLGEDAVDIFSQFK 503 (773)
Q Consensus 446 ~tynaLI~ay~k~G~l~eA~~lf~~M~~---------~-----d~~tyn~LI~ay~~~G~~deAl~Lf~eM~ 503 (773)
.+|+.+-.+|.+.|++++|+..+++..+ + ...+|+.+-.+|...|++++|+..|++..
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554444321 0 01133444455555555555555555443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=94.36 E-value=0.074 Score=47.69 Aligned_cols=30 Identities=7% Similarity=-0.303 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 004114 581 VWEKLMNLCRMHGNLELGDRCAEIVEQLDP 610 (773)
Q Consensus 581 ty~~LI~a~~~~G~~e~A~~~~e~m~el~p 610 (773)
+|..+-.+|...|++++|...++...++.|
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 445566677777777777777777766644
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.06 E-value=0.11 Score=46.23 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004114 492 GEDAVDIFSQFKQAGLKPDDQIFIGVFSAC 521 (773)
Q Consensus 492 ~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~ 521 (773)
+++|.+.|++..+ +.|+..+|...|..+
T Consensus 102 ~~~A~~~~~kal~--l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 102 FDLATQFFQQAVD--EQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHhhhhhhcccc--cCCCHHHHHHHHHHH
Confidence 4566666666665 456666655544443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.73 E-value=0.19 Score=44.54 Aligned_cols=115 Identities=14% Similarity=0.063 Sum_probs=80.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 004114 385 LVKEGKVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDA----------KALEEAKAVHEHVERLLSPLRVSTYNGILKM 454 (773)
Q Consensus 385 ~~~~G~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~----------g~le~A~~l~~~m~k~G~~pd~~tynaLI~a 454 (773)
|-+.+.+++|+..|++..+.. +-+..++..+-.+|... +.+++|...++..++.. +-+..+|..|-.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 445667899999999998863 33566777766666543 45688999999998865 3367788888888
Q ss_pred HHhCCC-----------hHHHHHHHHHhh--cCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004114 455 YSECDS-----------MDDAFSVFSNMT--ERDLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGL 507 (773)
Q Consensus 455 y~k~G~-----------l~eA~~lf~~M~--~~d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv 507 (773)
|...|+ +++|.+.|++.. +|+-..|...+..+ .+|.+++.+..+.|+
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 876553 577888888766 46555544444333 577788888777664
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.23 Score=40.52 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=45.7
Q ss_pred hHHHHHHhCCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCchHHH
Q 004114 552 SIVDMLGSTGYLDEALEFIEKM--------PMEPD-VDVWEKLMNLCRMHGNLELGDRCAEIVEQLDPSRLNEKS 617 (773)
Q Consensus 552 ~LI~~y~r~G~l~eA~~lf~~M--------~~~Pd-~~ty~~LI~a~~~~G~~e~A~~~~e~m~el~p~~~~~y~ 617 (773)
-|-..+.+.|++++|.+.|++. ...++ ..++..|-.++.+.|++++|...++.+.+++|++..+..
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 3444556666666666665543 11223 567788888889999999999999999999998865443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.27 E-value=0.063 Score=57.95 Aligned_cols=112 Identities=9% Similarity=-0.037 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC-HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 004114 444 RVSTYNGILKMYSECDSMDDAFSVFSNMTERD-LTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDD-QIFIGVFSAC 521 (773)
Q Consensus 444 d~~tynaLI~ay~k~G~l~eA~~lf~~M~~~d-~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~-~Ty~~LL~a~ 521 (773)
+...+..+-..+.+.|+.++|...+.....++ ..++..|-..+...|++++|+..|.+..+. .|+. .+|+.|-..+
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILA 196 (497)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 34566667777778888888877766554432 245666777888888888888888887764 4554 5788888888
Q ss_pred HcCCChHHHHHHHHHHHHhcCCCCCcchhhhHHHHHHh
Q 004114 522 SALGDVVEGMLHFESMSKDYGIVPSMKHYVSIVDMLGS 559 (773)
Q Consensus 522 ~~~G~~deA~~if~~M~~~~Gi~Pd~~tyn~LI~~y~r 559 (773)
...|+..+|..+|.+.... -+|-..++..|...+.+
T Consensus 197 ~~~~~~~~A~~~y~ral~~--~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAV--KFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSS--SBCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHH
Confidence 8888888888887766442 24556667777666654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.88 E-value=0.88 Score=48.43 Aligned_cols=113 Identities=10% Similarity=-0.076 Sum_probs=68.3
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCC-cchhhhH
Q 004114 475 DLTSWDTMITGFAKNGLGEDAVDIFSQFKQAGLKPDDQIFIGVFSACSALGDVVEGMLHFESMSKDYGIVPS-MKHYVSI 553 (773)
Q Consensus 475 d~~tyn~LI~ay~~~G~~deAl~Lf~eM~~~Gv~Pd~~Ty~~LL~a~~~~G~~deA~~if~~M~~~~Gi~Pd-~~tyn~L 553 (773)
+...|..+-..+.+.|+.++|...+.+..... | ..++..|-..+...+++++|+.+|.+..+. .|+ ...|+.|
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l---~P~~~~~~~~L 192 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQL---VPSNGQPYNQL 192 (497)
T ss_dssp ------------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTBSHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCchHHHHHH
Confidence 55677888888889999999988887665421 1 246777888999999999999999987653 454 5899999
Q ss_pred HHHHHhCCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcC
Q 004114 554 VDMLGSTGYLDEALEFIEKM-PM-EPDVDVWEKLMNLCRMHG 593 (773)
Q Consensus 554 I~~y~r~G~l~eA~~lf~~M-~~-~Pd~~ty~~LI~a~~~~G 593 (773)
-..|...|+..+|...|.+. -+ .|-..++..|...+.+..
T Consensus 193 g~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 193 AILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999998766 22 356777888877776544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.57 E-value=0.57 Score=37.99 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004114 478 SWDTMITGFAKNGLGEDAVDIFSQFKQ 504 (773)
Q Consensus 478 tyn~LI~ay~~~G~~deAl~Lf~eM~~ 504 (773)
+++.|-.+|.+.|++++|+..|++.++
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 344455555555555555555555444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=88.22 E-value=4.6 Score=34.14 Aligned_cols=109 Identities=12% Similarity=-0.027 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----CCChHHHH
Q 004114 390 KVKEAIEVLGLLEKQCISVDLPTFSQLMQACGDAKALEEAKAVHEHVERLLSPLRVSTYNGILKMYSE----CDSMDDAF 465 (773)
Q Consensus 390 ~~~eAl~lf~~M~~~Gv~Pd~~ty~~LL~a~~~~g~le~A~~l~~~m~k~G~~pd~~tynaLI~ay~k----~G~l~eA~ 465 (773)
++++|++.|.+..+.|.. ..+..|. .....+.++|..++....+.| +...+..|-.+|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 566777777777776622 2222221 223456777777777766665 33444444455543 23456666
Q ss_pred HHHHHhhcC-CHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 004114 466 SVFSNMTER-DLTSWDTMITGFAK----NGLGEDAVDIFSQFKQAG 506 (773)
Q Consensus 466 ~lf~~M~~~-d~~tyn~LI~ay~~----~G~~deAl~Lf~eM~~~G 506 (773)
++|++..+. +..+...|-..|.. ..+.++|+++|++-.+.|
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 666655432 33333334333333 224445555555444433
|